[{"date_published":"2023-08-01T00:00:00Z","keyword":["Cell Biology","Molecular Biology","Biochemistry","Biotechnology"],"external_id":{"isi":["001025621500002"]},"page":"1141-1142","publication_identifier":{"issn":["1548-7091"],"eissn":["1548-7105"]},"scopus_import":"1","type":"journal_article","date_updated":"2024-01-10T08:37:48Z","oa_version":"None","day":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","language":[{"iso":"eng"}],"doi":"10.1038/s41592-023-01937-5","department":[{"_id":"JoDa"}],"publisher":"Springer Nature","article_type":"letter_note","volume":20,"issue":"8","date_created":"2024-01-10T08:07:15Z","month":"08","status":"public","intvolume":"        20","isi":1,"year":"2023","citation":{"apa":"Danzl, J. G., &#38; Velicky, P. (2023). LIONESS enables 4D nanoscale reconstruction of living brain tissue. <i>Nature Methods</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41592-023-01937-5\">https://doi.org/10.1038/s41592-023-01937-5</a>","mla":"Danzl, Johann G., and Philipp Velicky. “LIONESS Enables 4D Nanoscale Reconstruction of Living Brain Tissue.” <i>Nature Methods</i>, vol. 20, no. 8, Springer Nature, 2023, pp. 1141–42, doi:<a href=\"https://doi.org/10.1038/s41592-023-01937-5\">10.1038/s41592-023-01937-5</a>.","ieee":"J. G. Danzl and P. Velicky, “LIONESS enables 4D nanoscale reconstruction of living brain tissue,” <i>Nature Methods</i>, vol. 20, no. 8. Springer Nature, pp. 1141–1142, 2023.","ama":"Danzl JG, Velicky P. LIONESS enables 4D nanoscale reconstruction of living brain tissue. <i>Nature Methods</i>. 2023;20(8):1141-1142. doi:<a href=\"https://doi.org/10.1038/s41592-023-01937-5\">10.1038/s41592-023-01937-5</a>","ista":"Danzl JG, Velicky P. 2023. LIONESS enables 4D nanoscale reconstruction of living brain tissue. Nature Methods. 20(8), 1141–1142.","chicago":"Danzl, Johann G, and Philipp Velicky. “LIONESS Enables 4D Nanoscale Reconstruction of Living Brain Tissue.” <i>Nature Methods</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s41592-023-01937-5\">https://doi.org/10.1038/s41592-023-01937-5</a>.","short":"J.G. Danzl, P. Velicky, Nature Methods 20 (2023) 1141–1142."},"author":[{"id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","full_name":"Danzl, Johann G","orcid":"0000-0001-8559-3973","last_name":"Danzl","first_name":"Johann G"},{"id":"39BDC62C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2340-7431","full_name":"Velicky, Philipp","last_name":"Velicky","first_name":"Philipp"}],"quality_controlled":"1","publication_status":"published","abstract":[{"text":"We developed LIONESS, a technology that leverages improvements to optical super-resolution microscopy and prior information on sample structure via machine learning to overcome the limitations (in 3D-resolution, signal-to-noise ratio and light exposure) of optical microscopy of living biological specimens. LIONESS enables dense reconstruction of living brain tissue and morphodynamics visualization at the nanoscale.","lang":"eng"}],"title":"LIONESS enables 4D nanoscale reconstruction of living brain tissue","publication":"Nature Methods","related_material":{"record":[{"id":"13267","relation":"extended_version","status":"public"}]},"_id":"14770"},{"arxiv":1,"publication_identifier":{"eissn":["2575-7075"],"eisbn":["9798350301298"]},"page":"24364-24373","date_published":"2023-08-22T00:00:00Z","external_id":{"arxiv":["2304.12622"],"isi":["001062531308068"]},"acknowledgement":"The authors would like to sincerely thank Sara Hooker for her feedback during the development of this work. EI was supported in part by the FWF DK VGSCO, grant agreement number W1260-N35. AP and DA acknowledge generous ERC support, via Starting Grant 805223 ScaleML.","doi":"10.1109/cvpr52729.2023.02334","language":[{"iso":"eng"}],"department":[{"_id":"DaAl"},{"_id":"ChLa"}],"ec_funded":1,"day":"22","date_updated":"2024-01-10T08:59:26Z","type":"conference","oa_version":"Preprint","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","date_created":"2024-01-10T08:42:40Z","month":"08","conference":{"location":"Vancouver, BC, Canada","start_date":"2023-06-17","end_date":"2023-06-24","name":"CVPR: Conference on Computer Vision and Pattern Recognition"},"isi":1,"publisher":"IEEE","publication_status":"published","abstract":[{"lang":"eng","text":"Pruning—that is, setting a significant subset of the parameters of a neural network to zero—is one of the most popular methods of model compression. Yet, several recent works have raised the issue that pruning may induce or exacerbate bias in the output of the compressed model. Despite existing evidence for this phenomenon, the relationship between neural network pruning and induced bias is not well-understood. In this work, we systematically investigate and characterize this phenomenon in Convolutional Neural Networks for computer vision. First, we show that it is in fact possible to obtain highly-sparse models, e.g. with less than 10% remaining weights, which do not decrease in accuracy nor substantially increase in bias when compared to dense models. At the same time, we also find that, at higher sparsities, pruned models exhibit higher uncertainty in their outputs, as well as increased correlations, which we directly link to increased bias. We propose easy-to-use criteria which, based only on the uncompressed model, establish whether bias will increase with pruning, and identify the samples most susceptible to biased predictions post-compression. Our code can be found at https://github.com/IST-DASLab/pruned-vision-model-bias."}],"project":[{"_id":"9B9290DE-BA93-11EA-9121-9846C619BF3A","name":"Vienna Graduate School on Computational Optimization","grant_number":" W1260-N35"},{"name":"Elastic Coordination for Scalable Machine Learning","grant_number":"805223","_id":"268A44D6-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"related_material":{"link":[{"relation":"software","url":"https://github.com/IST-DASLab/pruned-vision-model-bias"}]},"oa":1,"_id":"14771","publication":"2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition","title":"Bias in pruned vision models: In-depth analysis and countermeasures","year":"2023","author":[{"first_name":"Eugenia B","last_name":"Iofinova","id":"f9a17499-f6e0-11ea-865d-fdf9a3f77117","orcid":"0000-0002-7778-3221","full_name":"Iofinova, Eugenia B"},{"full_name":"Peste, Elena-Alexandra","id":"32D78294-F248-11E8-B48F-1D18A9856A87","first_name":"Elena-Alexandra","last_name":"Peste"},{"last_name":"Alistarh","first_name":"Dan-Adrian","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-3650-940X","full_name":"Alistarh, Dan-Adrian"}],"quality_controlled":"1","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2304.12622","open_access":"1"}],"citation":{"ista":"Iofinova EB, Peste E-A, Alistarh D-A. 2023. Bias in pruned vision models: In-depth analysis and countermeasures. 2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition. CVPR: Conference on Computer Vision and Pattern Recognition, 24364–24373.","chicago":"Iofinova, Eugenia B, Elena-Alexandra Peste, and Dan-Adrian Alistarh. “Bias in Pruned Vision Models: In-Depth Analysis and Countermeasures.” In <i>2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition</i>, 24364–73. IEEE, 2023. <a href=\"https://doi.org/10.1109/cvpr52729.2023.02334\">https://doi.org/10.1109/cvpr52729.2023.02334</a>.","short":"E.B. Iofinova, E.-A. Peste, D.-A. Alistarh, in:, 2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition, IEEE, 2023, pp. 24364–24373.","ieee":"E. B. Iofinova, E.-A. Peste, and D.-A. Alistarh, “Bias in pruned vision models: In-depth analysis and countermeasures,” in <i>2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition</i>, Vancouver, BC, Canada, 2023, pp. 24364–24373.","ama":"Iofinova EB, Peste E-A, Alistarh D-A. Bias in pruned vision models: In-depth analysis and countermeasures. In: <i>2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition</i>. IEEE; 2023:24364-24373. doi:<a href=\"https://doi.org/10.1109/cvpr52729.2023.02334\">10.1109/cvpr52729.2023.02334</a>","apa":"Iofinova, E. B., Peste, E.-A., &#38; Alistarh, D.-A. (2023). Bias in pruned vision models: In-depth analysis and countermeasures. In <i>2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition</i> (pp. 24364–24373). Vancouver, BC, Canada: IEEE. <a href=\"https://doi.org/10.1109/cvpr52729.2023.02334\">https://doi.org/10.1109/cvpr52729.2023.02334</a>","mla":"Iofinova, Eugenia B., et al. “Bias in Pruned Vision Models: In-Depth Analysis and Countermeasures.” <i>2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition</i>, IEEE, 2023, pp. 24364–73, doi:<a href=\"https://doi.org/10.1109/cvpr52729.2023.02334\">10.1109/cvpr52729.2023.02334</a>."}},{"file_date_updated":"2024-01-10T11:23:57Z","publisher":"Elsevier","article_type":"original","issue":"11","volume":285,"date_created":"2024-01-10T09:15:18Z","month":"12","status":"public","article_number":"110146","intvolume":"       285","isi":1,"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2023","citation":{"mla":"Agresti, Antonio, and Amru Hussein. “Maximal Lp-Regularity and H∞-Calculus for Block Operator Matrices and Applications.” <i>Journal of Functional Analysis</i>, vol. 285, no. 11, 110146, Elsevier, 2023, doi:<a href=\"https://doi.org/10.1016/j.jfa.2023.110146\">10.1016/j.jfa.2023.110146</a>.","apa":"Agresti, A., &#38; Hussein, A. (2023). Maximal Lp-regularity and H∞-calculus for block operator matrices and applications. <i>Journal of Functional Analysis</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jfa.2023.110146\">https://doi.org/10.1016/j.jfa.2023.110146</a>","short":"A. Agresti, A. Hussein, Journal of Functional Analysis 285 (2023).","chicago":"Agresti, Antonio, and Amru Hussein. “Maximal Lp-Regularity and H∞-Calculus for Block Operator Matrices and Applications.” <i>Journal of Functional Analysis</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.jfa.2023.110146\">https://doi.org/10.1016/j.jfa.2023.110146</a>.","ista":"Agresti A, Hussein A. 2023. Maximal Lp-regularity and H∞-calculus for block operator matrices and applications. Journal of Functional Analysis. 285(11), 110146.","ama":"Agresti A, Hussein A. Maximal Lp-regularity and H∞-calculus for block operator matrices and applications. <i>Journal of Functional Analysis</i>. 2023;285(11). doi:<a href=\"https://doi.org/10.1016/j.jfa.2023.110146\">10.1016/j.jfa.2023.110146</a>","ieee":"A. Agresti and A. Hussein, “Maximal Lp-regularity and H∞-calculus for block operator matrices and applications,” <i>Journal of Functional Analysis</i>, vol. 285, no. 11. Elsevier, 2023."},"author":[{"id":"673cd0cc-9b9a-11eb-b144-88f30e1fbb72","full_name":"Agresti, Antonio","orcid":"0000-0002-9573-2962","first_name":"Antonio","last_name":"Agresti"},{"first_name":"Amru","last_name":"Hussein","full_name":"Hussein, Amru"}],"quality_controlled":"1","publication_status":"published","abstract":[{"text":"Many coupled evolution equations can be described via 2×2-block operator matrices of the form A=[ \r\nA\tB\r\nC\tD\r\n ] in a product space X=X1×X2 with possibly unbounded entries. Here, the case of diagonally dominant block operator matrices is considered, that is, the case where the full operator A can be seen as a relatively bounded perturbation of its diagonal part with D(A)=D(A)×D(D) though with possibly large relative bound. For such operators the properties of sectoriality, R-sectoriality and the boundedness of the H∞-calculus are studied, and for these properties perturbation results for possibly large but structured perturbations are derived. Thereby, the time dependent parabolic problem associated with A can be analyzed in maximal Lpt\r\n-regularity spaces, and this is applied to a wide range of problems such as different theories for liquid crystals, an artificial Stokes system, strongly damped wave and plate equations, and a Keller-Segel model.","lang":"eng"}],"title":"Maximal Lp-regularity and H∞-calculus for block operator matrices and applications","publication":"Journal of Functional Analysis","oa":1,"ddc":["510"],"_id":"14772","date_published":"2023-12-01T00:00:00Z","file":[{"access_level":"open_access","checksum":"eda98ca2aa73da91bd074baed34c2b3c","file_name":"2023_JourFunctionalAnalysis_Agresti.pdf","file_id":"14789","date_updated":"2024-01-10T11:23:57Z","success":1,"creator":"dernst","content_type":"application/pdf","file_size":1120592,"date_created":"2024-01-10T11:23:57Z","relation":"main_file"}],"external_id":{"arxiv":["2108.01962"],"isi":["001081809000001"]},"keyword":["Analysis"],"arxiv":1,"publication_identifier":{"issn":["0022-1236"]},"scopus_import":"1","date_updated":"2024-01-10T11:24:56Z","type":"journal_article","oa_version":"Published Version","day":"01","article_processing_charge":"Yes (in subscription journal)","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We would like to thank Tim Binz, Emiel Lorist and Mark Veraar for valuable discussions. We also thank the anonymous referees for their helpful comments and suggestions, and for the very accurate reading of the manuscript.\r\nThe first author has been supported partially by the Nachwuchsring – Network for the promotion of young scientists – at TU Kaiserslautern. Both authors have been supported by MathApp – Mathematics Applied to Real-World Problems - part of the Research Initiative of the Federal State of Rhineland-Palatinate, Germany.","doi":"10.1016/j.jfa.2023.110146","language":[{"iso":"eng"}],"has_accepted_license":"1","department":[{"_id":"JuFi"}]},{"publication_identifier":{"issn":["0031-9228"],"eissn":["1945-0699"]},"date_published":"2023-05-01T00:00:00Z","keyword":["General Physics and Astronomy"],"external_id":{"isi":["000984516100007"]},"doi":"10.1063/pt.3.5234","language":[{"iso":"eng"}],"department":[{"_id":"CaMu"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","day":"01","type":"journal_article","date_updated":"2024-01-10T12:38:02Z","oa_version":"Published Version","isi":1,"intvolume":"        76","status":"public","article_number":"28","date_created":"2024-01-10T09:18:04Z","month":"05","issue":"5","volume":76,"publisher":"AIP Publishing","article_type":"original","oa":1,"_id":"14773","publication":"Physics Today","title":"The cloud dynamics of convective storm systems","publication_status":"published","abstract":[{"text":"Through a combination of idealized simulations and real-world data, researchers are uncovering how internal feedbacks and large-scale motions influence cloud dynamics.","lang":"eng"}],"quality_controlled":"1","author":[{"id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","full_name":"Muller, Caroline J","orcid":"0000-0001-5836-5350","last_name":"Muller","first_name":"Caroline J"},{"first_name":"Sophie","last_name":"Abramian","full_name":"Abramian, Sophie"}],"citation":{"ieee":"C. J. Muller and S. Abramian, “The cloud dynamics of convective storm systems,” <i>Physics Today</i>, vol. 76, no. 5. AIP Publishing, 2023.","ama":"Muller CJ, Abramian S. The cloud dynamics of convective storm systems. <i>Physics Today</i>. 2023;76(5). doi:<a href=\"https://doi.org/10.1063/pt.3.5234\">10.1063/pt.3.5234</a>","ista":"Muller CJ, Abramian S. 2023. The cloud dynamics of convective storm systems. Physics Today. 76(5), 28.","chicago":"Muller, Caroline J, and Sophie Abramian. “The Cloud Dynamics of Convective Storm Systems.” <i>Physics Today</i>. AIP Publishing, 2023. <a href=\"https://doi.org/10.1063/pt.3.5234\">https://doi.org/10.1063/pt.3.5234</a>.","short":"C.J. Muller, S. Abramian, Physics Today 76 (2023).","apa":"Muller, C. J., &#38; Abramian, S. (2023). The cloud dynamics of convective storm systems. <i>Physics Today</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/pt.3.5234\">https://doi.org/10.1063/pt.3.5234</a>","mla":"Muller, Caroline J., and Sophie Abramian. “The Cloud Dynamics of Convective Storm Systems.” <i>Physics Today</i>, vol. 76, no. 5, 28, AIP Publishing, 2023, doi:<a href=\"https://doi.org/10.1063/pt.3.5234\">10.1063/pt.3.5234</a>."},"main_file_link":[{"open_access":"1","url":"https://www.lmd.ens.fr/muller/Pubs/2023-MullerAbramianPhysToday.pdf"}],"year":"2023"},{"publication_identifier":{"eissn":["1477-9129"],"issn":["0950-1991"]},"keyword":["Developmental Biology","Molecular Biology"],"file":[{"success":1,"file_id":"14790","date_updated":"2024-01-10T12:41:13Z","checksum":"2d6f52dc33260a9b2352b8f28374ba5f","file_name":"2023_Development_Harish.pdf","access_level":"open_access","relation":"main_file","date_created":"2024-01-10T12:41:13Z","content_type":"application/pdf","creator":"dernst","file_size":12836306}],"external_id":{"pmid":["37665167"],"isi":["001097449100002"]},"date_published":"2023-10-01T00:00:00Z","has_accepted_license":"1","department":[{"_id":"AnKi"}],"doi":"10.1242/dev.201559","language":[{"iso":"eng"}],"acknowledgement":"We thank members of the Brand lab, as well as Justina Stark (Ivo Sbalzarini group, Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany) for project-related discussions; Darren Gilmour (University of Zurich), Karuna Sampath (University of Warwick) and Gokul Kesavan (Vowels Lifesciences Private Limited, Bangalore) for comments on the manuscript; personnel of the CMCB technology platform, TU Dresden for imaging and image analysis-related support; and Maurizio Abbate (Technical support, Arivis) for help with image analysis. We are also grateful to Stapornwongkul and Briscoe for commenting on a preprint version of our work (Stapornwongkul and Briscoe, 2022).\r\nThis work was supported by the Deutsche Forschungsgemeinschaft (BR 1746/6-2, BR 1746/11-1 and BR 1746/3 to M.B.), by a Cluster of Excellence ‘Physics of Life’ seed grant and by institutional funds from Technische Universitat Dresden (to M.B.). Open Access funding provided by Technische Universitat Dresden. Deposited in PMC for immediate release.","article_processing_charge":"Yes (via OA deal)","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","date_updated":"2024-01-10T12:45:25Z","type":"journal_article","day":"01","intvolume":"       150","isi":1,"month":"10","date_created":"2024-01-10T09:18:54Z","article_number":"dev201559","status":"public","issue":"19","volume":150,"file_date_updated":"2024-01-10T12:41:13Z","publisher":"The Company of Biologists","article_type":"original","pmid":1,"title":"Real-time monitoring of an endogenous Fgf8a gradient attests to its role as a morphogen during zebrafish gastrulation","publication":"Development","_id":"14774","ddc":["570"],"oa":1,"abstract":[{"text":"Morphogen gradients impart positional information to cells in a homogenous tissue field. Fgf8a, a highly conserved growth factor, has been proposed to act as a morphogen during zebrafish gastrulation. However, technical limitations have so far prevented direct visualization of the endogenous Fgf8a gradient and confirmation of its morphogenic activity. Here, we monitor Fgf8a propagation in the developing neural plate using a CRISPR/Cas9-mediated EGFP knock-in at the endogenous fgf8a locus. By combining sensitive imaging with single-molecule fluorescence correlation spectroscopy, we demonstrate that Fgf8a, which is produced at the embryonic margin, propagates by diffusion through the extracellular space and forms a graded distribution towards the animal pole. Overlaying the Fgf8a gradient curve with expression profiles of its downstream targets determines the precise input-output relationship of Fgf8a-mediated patterning. Manipulation of the extracellular Fgf8a levels alters the signaling outcome, thus establishing Fgf8a as a bona fide morphogen during zebrafish gastrulation. Furthermore, by hindering Fgf8a diffusion, we demonstrate that extracellular diffusion of the protein from the source is crucial for it to achieve its morphogenic potential.","lang":"eng"}],"publication_status":"published","citation":{"apa":"Harish, R. K., Gupta, M., Zöller, D., Hartmann, H., Gheisari, A., Machate, A., … Brand, M. (2023). Real-time monitoring of an endogenous Fgf8a gradient attests to its role as a morphogen during zebrafish gastrulation. <i>Development</i>. The Company of Biologists. <a href=\"https://doi.org/10.1242/dev.201559\">https://doi.org/10.1242/dev.201559</a>","mla":"Harish, Rohit K., et al. “Real-Time Monitoring of an Endogenous Fgf8a Gradient Attests to Its Role as a Morphogen during Zebrafish Gastrulation.” <i>Development</i>, vol. 150, no. 19, dev201559, The Company of Biologists, 2023, doi:<a href=\"https://doi.org/10.1242/dev.201559\">10.1242/dev.201559</a>.","chicago":"Harish, Rohit K, Mansi Gupta, Daniela Zöller, Hella Hartmann, Ali Gheisari, Anja Machate, Stefan Hans, and Michael Brand. “Real-Time Monitoring of an Endogenous Fgf8a Gradient Attests to Its Role as a Morphogen during Zebrafish Gastrulation.” <i>Development</i>. The Company of Biologists, 2023. <a href=\"https://doi.org/10.1242/dev.201559\">https://doi.org/10.1242/dev.201559</a>.","short":"R.K. Harish, M. Gupta, D. Zöller, H. Hartmann, A. Gheisari, A. Machate, S. Hans, M. Brand, Development 150 (2023).","ista":"Harish RK, Gupta M, Zöller D, Hartmann H, Gheisari A, Machate A, Hans S, Brand M. 2023. Real-time monitoring of an endogenous Fgf8a gradient attests to its role as a morphogen during zebrafish gastrulation. Development. 150(19), dev201559.","ieee":"R. K. Harish <i>et al.</i>, “Real-time monitoring of an endogenous Fgf8a gradient attests to its role as a morphogen during zebrafish gastrulation,” <i>Development</i>, vol. 150, no. 19. The Company of Biologists, 2023.","ama":"Harish RK, Gupta M, Zöller D, et al. Real-time monitoring of an endogenous Fgf8a gradient attests to its role as a morphogen during zebrafish gastrulation. <i>Development</i>. 2023;150(19). doi:<a href=\"https://doi.org/10.1242/dev.201559\">10.1242/dev.201559</a>"},"quality_controlled":"1","author":[{"id":"1bae78aa-ee0e-11ec-9b76-bc42990f409d","full_name":"Harish, Rohit K","first_name":"Rohit K","last_name":"Harish"},{"full_name":"Gupta, Mansi","first_name":"Mansi","last_name":"Gupta"},{"last_name":"Zöller","first_name":"Daniela","full_name":"Zöller, Daniela"},{"full_name":"Hartmann, Hella","first_name":"Hella","last_name":"Hartmann"},{"first_name":"Ali","last_name":"Gheisari","full_name":"Gheisari, Ali"},{"full_name":"Machate, Anja","first_name":"Anja","last_name":"Machate"},{"first_name":"Stefan","last_name":"Hans","full_name":"Hans, Stefan"},{"last_name":"Brand","first_name":"Michael","full_name":"Brand, Michael"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2023"},{"ec_funded":1,"language":[{"iso":"eng"}],"doi":"10.1214/22-aap1826","department":[{"_id":"LaEr"}],"acknowledgement":"K. Schnelli was supported by the Swedish Research Council Grants VR-2017-05195, and the Knut and Alice Wallenberg Foundation. Y. Xu was supported by the Swedish Research Council Grant VR-2017-05195 and the ERC Advanced Grant “RMTBeyond” No. 101020331.","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2024-01-10T13:31:46Z","type":"journal_article","oa_version":"Preprint","day":"01","publication_identifier":{"issn":["1050-5164"]},"scopus_import":"1","arxiv":1,"date_published":"2023-02-01T00:00:00Z","external_id":{"isi":["000946432400021"],"arxiv":["2108.02728"]},"keyword":["Statistics","Probability and Uncertainty","Statistics and Probability"],"page":"677-725","publication":"The Annals of Applied Probability","title":"Convergence rate to the Tracy–Widom laws for the largest eigenvalue of sample covariance matrices","oa":1,"_id":"14775","project":[{"grant_number":"101020331","name":"Random matrices beyond Wigner-Dyson-Mehta","call_identifier":"H2020","_id":"62796744-2b32-11ec-9570-940b20777f1d"}],"publication_status":"published","abstract":[{"text":"We establish a quantitative version of the Tracy–Widom law for the largest eigenvalue of high-dimensional sample covariance matrices. To be precise, we show that the fluctuations of the largest eigenvalue of a sample covariance matrix X∗X converge to its Tracy–Widom limit at a rate nearly N−1/3, where X is an M×N random matrix whose entries are independent real or complex random variables, assuming that both M and N tend to infinity at a constant rate. This result improves the previous estimate N−2/9 obtained by Wang (2019). Our proof relies on a Green function comparison method (Adv. Math. 229 (2012) 1435–1515) using iterative cumulant expansions, the local laws for the Green function and asymptotic properties of the correlation kernel of the white Wishart ensemble.","lang":"eng"}],"citation":{"ista":"Schnelli K, Xu Y. 2023. Convergence rate to the Tracy–Widom laws for the largest eigenvalue of sample covariance matrices. The Annals of Applied Probability. 33(1), 677–725.","short":"K. Schnelli, Y. Xu, The Annals of Applied Probability 33 (2023) 677–725.","chicago":"Schnelli, Kevin, and Yuanyuan Xu. “Convergence Rate to the Tracy–Widom Laws for the Largest Eigenvalue of Sample Covariance Matrices.” <i>The Annals of Applied Probability</i>. Institute of Mathematical Statistics, 2023. <a href=\"https://doi.org/10.1214/22-aap1826\">https://doi.org/10.1214/22-aap1826</a>.","ieee":"K. Schnelli and Y. Xu, “Convergence rate to the Tracy–Widom laws for the largest eigenvalue of sample covariance matrices,” <i>The Annals of Applied Probability</i>, vol. 33, no. 1. Institute of Mathematical Statistics, pp. 677–725, 2023.","ama":"Schnelli K, Xu Y. Convergence rate to the Tracy–Widom laws for the largest eigenvalue of sample covariance matrices. <i>The Annals of Applied Probability</i>. 2023;33(1):677-725. doi:<a href=\"https://doi.org/10.1214/22-aap1826\">10.1214/22-aap1826</a>","mla":"Schnelli, Kevin, and Yuanyuan Xu. “Convergence Rate to the Tracy–Widom Laws for the Largest Eigenvalue of Sample Covariance Matrices.” <i>The Annals of Applied Probability</i>, vol. 33, no. 1, Institute of Mathematical Statistics, 2023, pp. 677–725, doi:<a href=\"https://doi.org/10.1214/22-aap1826\">10.1214/22-aap1826</a>.","apa":"Schnelli, K., &#38; Xu, Y. (2023). Convergence rate to the Tracy–Widom laws for the largest eigenvalue of sample covariance matrices. <i>The Annals of Applied Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/22-aap1826\">https://doi.org/10.1214/22-aap1826</a>"},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2108.02728"}],"author":[{"full_name":"Schnelli, Kevin","orcid":"0000-0003-0954-3231","id":"434AD0AE-F248-11E8-B48F-1D18A9856A87","last_name":"Schnelli","first_name":"Kevin"},{"orcid":"0000-0003-1559-1205","full_name":"Xu, Yuanyuan","id":"7902bdb1-a2a4-11eb-a164-c9216f71aea3","last_name":"Xu","first_name":"Yuanyuan"}],"quality_controlled":"1","year":"2023","intvolume":"        33","isi":1,"date_created":"2024-01-10T09:23:31Z","month":"02","status":"public","volume":33,"issue":"1","publisher":"Institute of Mathematical Statistics","article_type":"original"},{"file_date_updated":"2024-01-10T13:39:42Z","publisher":"MDPI","article_type":"original","volume":24,"issue":"22","month":"11","date_created":"2024-01-10T09:24:35Z","article_number":"16527","status":"public","intvolume":"        24","isi":1,"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2023","citation":{"ieee":"A. Teplova <i>et al.</i>, “Phytaspase Is capable of detaching the endoplasmic reticulum retrieval signal from tobacco calreticulin-3,” <i>International Journal of Molecular Sciences</i>, vol. 24, no. 22. MDPI, 2023.","ama":"Teplova A, Pigidanov AA, Serebryakova MV, et al. Phytaspase Is capable of detaching the endoplasmic reticulum retrieval signal from tobacco calreticulin-3. <i>International Journal of Molecular Sciences</i>. 2023;24(22). doi:<a href=\"https://doi.org/10.3390/ijms242216527\">10.3390/ijms242216527</a>","ista":"Teplova A, Pigidanov AA, Serebryakova MV, Golyshev SA, Galiullina RA, Chichkova NV, Vartapetian AB. 2023. Phytaspase Is capable of detaching the endoplasmic reticulum retrieval signal from tobacco calreticulin-3. International Journal of Molecular Sciences. 24(22), 16527.","chicago":"Teplova, Anastasiia, Artemii A. Pigidanov, Marina V. Serebryakova, Sergei A. Golyshev, Raisa A. Galiullina, Nina V. Chichkova, and Andrey B. Vartapetian. “Phytaspase Is Capable of Detaching the Endoplasmic Reticulum Retrieval Signal from Tobacco Calreticulin-3.” <i>International Journal of Molecular Sciences</i>. MDPI, 2023. <a href=\"https://doi.org/10.3390/ijms242216527\">https://doi.org/10.3390/ijms242216527</a>.","short":"A. Teplova, A.A. Pigidanov, M.V. Serebryakova, S.A. Golyshev, R.A. Galiullina, N.V. Chichkova, A.B. Vartapetian, International Journal of Molecular Sciences 24 (2023).","apa":"Teplova, A., Pigidanov, A. A., Serebryakova, M. V., Golyshev, S. A., Galiullina, R. A., Chichkova, N. V., &#38; Vartapetian, A. B. (2023). Phytaspase Is capable of detaching the endoplasmic reticulum retrieval signal from tobacco calreticulin-3. <i>International Journal of Molecular Sciences</i>. MDPI. <a href=\"https://doi.org/10.3390/ijms242216527\">https://doi.org/10.3390/ijms242216527</a>","mla":"Teplova, Anastasiia, et al. “Phytaspase Is Capable of Detaching the Endoplasmic Reticulum Retrieval Signal from Tobacco Calreticulin-3.” <i>International Journal of Molecular Sciences</i>, vol. 24, no. 22, 16527, MDPI, 2023, doi:<a href=\"https://doi.org/10.3390/ijms242216527\">10.3390/ijms242216527</a>."},"quality_controlled":"1","author":[{"last_name":"Teplova","first_name":"Anastasiia","full_name":"Teplova, Anastasiia","id":"e3736151-106c-11ec-b916-c2558e2762c6"},{"last_name":"Pigidanov","first_name":"Artemii A.","full_name":"Pigidanov, Artemii A."},{"full_name":"Serebryakova, Marina V.","first_name":"Marina V.","last_name":"Serebryakova"},{"full_name":"Golyshev, Sergei A.","first_name":"Sergei A.","last_name":"Golyshev"},{"last_name":"Galiullina","first_name":"Raisa A.","full_name":"Galiullina, Raisa A."},{"full_name":"Chichkova, Nina V.","last_name":"Chichkova","first_name":"Nina V."},{"full_name":"Vartapetian, Andrey B.","last_name":"Vartapetian","first_name":"Andrey B."}],"abstract":[{"text":"Soluble chaperones residing in the endoplasmic reticulum (ER) play vitally important roles in folding and quality control of newly synthesized proteins that transiently pass through the ER en route to their final destinations. These soluble residents of the ER are themselves endowed with an ER retrieval signal that enables the cell to bring the escaped residents back from the Golgi. Here, by using purified proteins, we showed that Nicotiana tabacum phytaspase, a plant aspartate-specific protease, introduces two breaks at the C-terminus of the N. tabacum ER resident calreticulin-3. These cleavages resulted in removal of either a dipeptide or a hexapeptide from the C-terminus of calreticulin-3 encompassing part or all of the ER retrieval signal. Consistently, expression of the calreticulin-3 derivative mimicking the phytaspase cleavage product in Nicotiana benthamiana cells demonstrated loss of the ER accumulation of the protein. Notably, upon its escape from the ER, calreticulin-3 was further processed by an unknown protease(s) to generate the free N-terminal (N) domain of calreticulin-3, which was ultimately secreted into the apoplast. Our study thus identified a specific proteolytic enzyme capable of precise detachment of the ER retrieval signal from a plant ER resident protein, with implications for the further fate of the escaped resident.","lang":"eng"}],"publication_status":"published","pmid":1,"publication":"International Journal of Molecular Sciences","title":"Phytaspase Is capable of detaching the endoplasmic reticulum retrieval signal from tobacco calreticulin-3","_id":"14776","oa":1,"ddc":["580"],"external_id":{"pmid":["38003717"],"isi":["001113792600001"]},"keyword":["Inorganic Chemistry","Organic Chemistry","Physical and Theoretical Chemistry","Computer Science Applications","Spectroscopy","Molecular Biology","General Medicine","Catalysis"],"file":[{"date_updated":"2024-01-10T13:39:42Z","file_id":"14791","success":1,"access_level":"open_access","file_name":"2023_IJMS_Teplova.pdf","checksum":"4df7d206ba022b7f54eff1f0aec1659a","date_created":"2024-01-10T13:39:42Z","relation":"main_file","creator":"dernst","content_type":"application/pdf","file_size":2637784}],"date_published":"2023-11-01T00:00:00Z","publication_identifier":{"issn":["1422-0067"]},"oa_version":"Published Version","date_updated":"2024-01-10T13:41:10Z","type":"journal_article","day":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"Yes","acknowledgement":"We thank C.U.T. Hellen for critically reading the manuscript. The MALDI MS facility and CLSM became available to us in the framework of Moscow State University Development Programs PNG 5.13 and PNR 5.13.\r\nThis work was funded by the Russian Science Foundation, grant numbers 19-14-00010 and 22-14-00071.","has_accepted_license":"1","department":[{"_id":"JiFr"}],"doi":"10.3390/ijms242216527","language":[{"iso":"eng"}]},{"status":"public","article_number":"125206","month":"12","date_created":"2024-01-10T09:26:08Z","isi":1,"intvolume":"        13","publisher":"AIP Publishing","article_type":"original","file_date_updated":"2024-01-10T13:47:31Z","volume":13,"issue":"12","abstract":[{"lang":"eng","text":"The effects of the partial V-substitution for Ag on the thermoelectric (TE) properties are investigated for a flexible semiconducting compound Ag2S0.55Se0.45. Density functional theory calculations predict that such a partial V-substitution constructively modifies the electronic structure near the bottom of the conduction band to improve the TE performance. The synthesized Ag1.97V0.03S0.55Se0.45 is found to possess a TE dimensionless figure-of-merit (ZT) of 0.71 at 350 K with maintaining its flexible nature. This ZT value is relatively high in comparison with those reported for flexible TE materials below 360 K. The increase in the ZT value is caused by the enhanced absolute value of the Seebeck coefficient with less significant variation in electrical resistivity. The high ZT value with the flexible nature naturally allows us to employ the Ag1.97V0.03S0.55Se0.45 as a component of flexible TE generators."}],"publication_status":"published","_id":"14777","ddc":["540"],"oa":1,"title":"Improvement of thermoelectric performance of flexible compound Ag2S0.55Se0.45 by means of partial V-substitution for Ag","publication":"AIP Advances","year":"2023","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"author":[{"full_name":"Sato, Kosuke","last_name":"Sato","first_name":"Kosuke"},{"full_name":"Singh, Saurabh","orcid":"0000-0003-2209-5269","id":"12d625da-9cb3-11ed-9667-af09d37d3f0a","first_name":"Saurabh","last_name":"Singh"},{"first_name":"Itsuki","last_name":"Yamazaki","full_name":"Yamazaki, Itsuki"},{"last_name":"Hirata","first_name":"Keisuke","full_name":"Hirata, Keisuke"},{"full_name":"Ang, Artoni Kevin R.","last_name":"Ang","first_name":"Artoni Kevin R."},{"first_name":"Masaharu","last_name":"Matsunami","full_name":"Matsunami, Masaharu"},{"full_name":"Takeuchi, Tsunehiro","first_name":"Tsunehiro","last_name":"Takeuchi"}],"quality_controlled":"1","citation":{"mla":"Sato, Kosuke, et al. “Improvement of Thermoelectric Performance of Flexible Compound Ag2S0.55Se0.45 by Means of Partial V-Substitution for Ag.” <i>AIP Advances</i>, vol. 13, no. 12, 125206, AIP Publishing, 2023, doi:<a href=\"https://doi.org/10.1063/5.0171888\">10.1063/5.0171888</a>.","apa":"Sato, K., Singh, S., Yamazaki, I., Hirata, K., Ang, A. K. R., Matsunami, M., &#38; Takeuchi, T. (2023). Improvement of thermoelectric performance of flexible compound Ag2S0.55Se0.45 by means of partial V-substitution for Ag. <i>AIP Advances</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0171888\">https://doi.org/10.1063/5.0171888</a>","ieee":"K. Sato <i>et al.</i>, “Improvement of thermoelectric performance of flexible compound Ag2S0.55Se0.45 by means of partial V-substitution for Ag,” <i>AIP Advances</i>, vol. 13, no. 12. AIP Publishing, 2023.","ama":"Sato K, Singh S, Yamazaki I, et al. Improvement of thermoelectric performance of flexible compound Ag2S0.55Se0.45 by means of partial V-substitution for Ag. <i>AIP Advances</i>. 2023;13(12). doi:<a href=\"https://doi.org/10.1063/5.0171888\">10.1063/5.0171888</a>","short":"K. Sato, S. Singh, I. Yamazaki, K. Hirata, A.K.R. Ang, M. Matsunami, T. Takeuchi, AIP Advances 13 (2023).","chicago":"Sato, Kosuke, Saurabh Singh, Itsuki Yamazaki, Keisuke Hirata, Artoni Kevin R. Ang, Masaharu Matsunami, and Tsunehiro Takeuchi. “Improvement of Thermoelectric Performance of Flexible Compound Ag2S0.55Se0.45 by Means of Partial V-Substitution for Ag.” <i>AIP Advances</i>. AIP Publishing, 2023. <a href=\"https://doi.org/10.1063/5.0171888\">https://doi.org/10.1063/5.0171888</a>.","ista":"Sato K, Singh S, Yamazaki I, Hirata K, Ang AKR, Matsunami M, Takeuchi T. 2023. Improvement of thermoelectric performance of flexible compound Ag2S0.55Se0.45 by means of partial V-substitution for Ag. AIP Advances. 13(12), 125206."},"publication_identifier":{"eissn":["2158-3226"]},"file":[{"file_id":"14792","date_updated":"2024-01-10T13:47:31Z","success":1,"access_level":"open_access","file_name":"2023_AIPAdvances_Sato.pdf","checksum":"a7098388b8ff822b47f5ddd37ed3bdbc","date_created":"2024-01-10T13:47:31Z","relation":"main_file","content_type":"application/pdf","creator":"dernst","file_size":9676071}],"keyword":["General Physics and Astronomy"],"external_id":{"isi":["001114917200005"]},"date_published":"2023-12-01T00:00:00Z","acknowledgement":"This work received financial support partially from Japan Science and Technology Agency (JST) CREST Grant No. JPMJCR18I2, Japan. The powder-XRD experiments were conducted at BL5S2 of Aichi Synchrotron Radiation Center, Aichi Science & Technology Foundation, Aichi, Japan (Proposal No. 202301057).","department":[{"_id":"MaIb"}],"has_accepted_license":"1","doi":"10.1063/5.0171888","language":[{"iso":"eng"}],"day":"01","oa_version":"Published Version","date_updated":"2024-01-10T13:49:09Z","type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"Yes"},{"keyword":["Theoretical Computer Science","Software"],"file":[{"access_level":"open_access","checksum":"3bb133eeb27ec01649a9a36445d952d9","file_name":"2023_FormalAspectsComputing_Chatterjee.pdf","file_id":"14804","date_updated":"2024-01-16T08:11:24Z","success":1,"content_type":"application/pdf","creator":"dernst","file_size":502522,"date_created":"2024-01-16T08:11:24Z","relation":"main_file"}],"external_id":{"arxiv":["2108.02188"]},"date_published":"2023-06-23T00:00:00Z","arxiv":1,"publication_identifier":{"issn":["0934-5043"],"eissn":["1433-299X"]},"oa_version":"Published Version","date_updated":"2025-07-14T09:10:10Z","type":"journal_article","day":"23","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"Yes (via OA deal)","acknowledgement":"This research was partially supported by the ERC CoG (grant no. 863818; ForM-SMArt), the Czech Science Foundation (grant no. GA21-24711S), and the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie Grant Agreement No. 665385.","ec_funded":1,"department":[{"_id":"KrCh"}],"has_accepted_license":"1","doi":"10.1145/3585391","language":[{"iso":"eng"}],"file_date_updated":"2024-01-16T08:11:24Z","publisher":"Association for Computing Machinery","article_type":"original","issue":"2","volume":35,"month":"06","date_created":"2024-01-10T09:27:43Z","article_number":"11","status":"public","intvolume":"        35","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2023","citation":{"apa":"Chatterjee, K., Kafshdar Goharshady, E., Novotný, P., Zárevúcky, J., &#38; Zikelic, D. (2023). On lexicographic proof rules for probabilistic termination. <i>Formal Aspects of Computing</i>. Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3585391\">https://doi.org/10.1145/3585391</a>","mla":"Chatterjee, Krishnendu, et al. “On Lexicographic Proof Rules for Probabilistic Termination.” <i>Formal Aspects of Computing</i>, vol. 35, no. 2, 11, Association for Computing Machinery, 2023, doi:<a href=\"https://doi.org/10.1145/3585391\">10.1145/3585391</a>.","ista":"Chatterjee K, Kafshdar Goharshady E, Novotný P, Zárevúcky J, Zikelic D. 2023. On lexicographic proof rules for probabilistic termination. Formal Aspects of Computing. 35(2), 11.","chicago":"Chatterjee, Krishnendu, Ehsan Kafshdar Goharshady, Petr Novotný, Jiří Zárevúcky, and Dorde Zikelic. “On Lexicographic Proof Rules for Probabilistic Termination.” <i>Formal Aspects of Computing</i>. Association for Computing Machinery, 2023. <a href=\"https://doi.org/10.1145/3585391\">https://doi.org/10.1145/3585391</a>.","short":"K. Chatterjee, E. Kafshdar Goharshady, P. Novotný, J. Zárevúcky, D. Zikelic, Formal Aspects of Computing 35 (2023).","ieee":"K. Chatterjee, E. Kafshdar Goharshady, P. Novotný, J. Zárevúcky, and D. Zikelic, “On lexicographic proof rules for probabilistic termination,” <i>Formal Aspects of Computing</i>, vol. 35, no. 2. Association for Computing Machinery, 2023.","ama":"Chatterjee K, Kafshdar Goharshady E, Novotný P, Zárevúcky J, Zikelic D. On lexicographic proof rules for probabilistic termination. <i>Formal Aspects of Computing</i>. 2023;35(2). doi:<a href=\"https://doi.org/10.1145/3585391\">10.1145/3585391</a>"},"author":[{"first_name":"Krishnendu","last_name":"Chatterjee","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu"},{"full_name":"Kafshdar Goharshady, Ehsan","last_name":"Kafshdar Goharshady","first_name":"Ehsan"},{"first_name":"Petr","last_name":"Novotný","id":"3CC3B868-F248-11E8-B48F-1D18A9856A87","full_name":"Novotný, Petr"},{"last_name":"Zárevúcky","first_name":"Jiří","full_name":"Zárevúcky, Jiří"},{"first_name":"Dorde","last_name":"Zikelic","id":"294AA7A6-F248-11E8-B48F-1D18A9856A87","full_name":"Zikelic, Dorde","orcid":"0000-0002-4681-1699"}],"quality_controlled":"1","project":[{"call_identifier":"H2020","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","name":"Formal Methods for Stochastic Models: Algorithms and Applications","grant_number":"863818"},{"_id":"2564DBCA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"International IST Doctoral Program","grant_number":"665385"}],"abstract":[{"text":"We consider the almost-sure (a.s.) termination problem for probabilistic programs, which are a stochastic extension of classical imperative programs. Lexicographic ranking functions provide a sound and practical approach for termination of non-probabilistic programs, and their extension to probabilistic programs is achieved via lexicographic ranking supermartingales (LexRSMs). However, LexRSMs introduced in the previous work have a limitation that impedes their automation: all of their components have to be non-negative in all reachable states. This might result in a LexRSM not existing even for simple terminating programs. Our contributions are twofold. First, we introduce a generalization of LexRSMs that allows for some components to be negative. This standard feature of non-probabilistic termination proofs was hitherto not known to be sound in the probabilistic setting, as the soundness proof requires a careful analysis of the underlying stochastic process. Second, we present polynomial-time algorithms using our generalized LexRSMs for proving a.s. termination in broad classes of linear-arithmetic programs.","lang":"eng"}],"publication_status":"published","publication":"Formal Aspects of Computing","title":"On lexicographic proof rules for probabilistic termination","_id":"14778","related_material":{"record":[{"relation":"earlier_version","status":"public","id":"10414"}]},"oa":1,"ddc":["000"]},{"publication":"Geophysical Research Letters","title":"The decaying near‐surface boundary layer of a retreating alpine glacier","oa":1,"ddc":["550"],"_id":"14779","publication_status":"published","abstract":[{"text":"The presence of a developed boundary layer decouples a glacier's response from ambient conditions, suggesting that sensitivity to climate change is increased by glacier retreat. To test this hypothesis, we explore six years of distributed meteorological data on a small Swiss glacier in the period 2001–2022. Large glacier fragmentation has occurred since 2001 (−35% area change up to 2022) coinciding with notable frontal retreat, an observed switch from down‐glacier katabatic to up‐glacier valley winds and an increased sensitivity (ratio) of on‐glacier to off‐glacier temperature. As the glacier ceases to develop density‐driven katabatic winds, sensible heat fluxes on the glacier are increasingly determined by the conditions occurring outside the boundary layer of the glacier, sealing the glacier's demise as the climate continues to warm and experience an increased frequency of extreme summers.","lang":"eng"}],"citation":{"mla":"Shaw, Thomas E., et al. “The Decaying Near‐surface Boundary Layer of a Retreating Alpine Glacier.” <i>Geophysical Research Letters</i>, vol. 50, no. 11, e2023GL103043, American Geophysical Union, 2023, doi:<a href=\"https://doi.org/10.1029/2023gl103043\">10.1029/2023gl103043</a>.","apa":"Shaw, T. E., Buri, P., McCarthy, M., Miles, E. S., Ayala, Á., &#38; Pellicciotti, F. (2023). The decaying near‐surface boundary layer of a retreating alpine glacier. <i>Geophysical Research Letters</i>. American Geophysical Union. <a href=\"https://doi.org/10.1029/2023gl103043\">https://doi.org/10.1029/2023gl103043</a>","ista":"Shaw TE, Buri P, McCarthy M, Miles ES, Ayala Á, Pellicciotti F. 2023. The decaying near‐surface boundary layer of a retreating alpine glacier. Geophysical Research Letters. 50(11), e2023GL103043.","short":"T.E. Shaw, P. Buri, M. McCarthy, E.S. Miles, Á. Ayala, F. Pellicciotti, Geophysical Research Letters 50 (2023).","chicago":"Shaw, Thomas E., Pascal Buri, Michael McCarthy, Evan S. Miles, Álvaro Ayala, and Francesca Pellicciotti. “The Decaying Near‐surface Boundary Layer of a Retreating Alpine Glacier.” <i>Geophysical Research Letters</i>. American Geophysical Union, 2023. <a href=\"https://doi.org/10.1029/2023gl103043\">https://doi.org/10.1029/2023gl103043</a>.","ama":"Shaw TE, Buri P, McCarthy M, Miles ES, Ayala Á, Pellicciotti F. The decaying near‐surface boundary layer of a retreating alpine glacier. <i>Geophysical Research Letters</i>. 2023;50(11). doi:<a href=\"https://doi.org/10.1029/2023gl103043\">10.1029/2023gl103043</a>","ieee":"T. E. Shaw, P. Buri, M. McCarthy, E. S. Miles, Á. Ayala, and F. Pellicciotti, “The decaying near‐surface boundary layer of a retreating alpine glacier,” <i>Geophysical Research Letters</i>, vol. 50, no. 11. American Geophysical Union, 2023."},"quality_controlled":"1","author":[{"last_name":"Shaw","first_name":"Thomas E.","full_name":"Shaw, Thomas E."},{"full_name":"Buri, Pascal","last_name":"Buri","first_name":"Pascal"},{"last_name":"McCarthy","first_name":"Michael","full_name":"McCarthy, Michael"},{"full_name":"Miles, Evan S.","last_name":"Miles","first_name":"Evan S."},{"last_name":"Ayala","first_name":"Álvaro","full_name":"Ayala, Álvaro"},{"last_name":"Pellicciotti","first_name":"Francesca","orcid":"0000-0002-5554-8087","full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2023","intvolume":"        50","isi":1,"date_created":"2024-01-10T09:28:34Z","month":"06","status":"public","article_number":"e2023GL103043","volume":50,"issue":"11","file_date_updated":"2024-01-16T08:35:02Z","article_type":"original","publisher":"American Geophysical Union","language":[{"iso":"eng"}],"doi":"10.1029/2023gl103043","has_accepted_license":"1","department":[{"_id":"FrPe"}],"acknowledgement":"This work was funded by the EU Horizon 2020 Marie Skłodowska-Curie Actions Grant 101026058. The authors acknowl-edge the dedicated collection of field data by many parties since 2001, including those acknowledged for the cited works on Arolla Glacier. The authors would like to thank Fabienne Meier, Alice Zaugg, Raphael Willi, Maria Grundmann, and Marta Corrà for assistance in the field for the summers of 2021 and 2022. Off-glacier data provided by Grand Dixence SA (Arolla) and MeteoSwiss are kindly acknowledged. Simone Fatichi is thanked for the provision and support in the use of the Tethys-Chloris model. We thank Editor Mathieu Morlighem and two anonymous reviewers whose comments have helped to improve the quality of the manuscript.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","date_updated":"2024-01-16T08:42:36Z","type":"journal_article","oa_version":"Published Version","day":"16","publication_identifier":{"eissn":["1944-8007"],"issn":["0094-8276"]},"date_published":"2023-06-16T00:00:00Z","keyword":["General Earth and Planetary Sciences","Geophysics"],"external_id":{"isi":["000999436400001"]},"file":[{"file_name":"2023_GeophysicalResearchLetter_Shaw.pdf","checksum":"391a3005c95340a0ae129ce4fbdf2bae","access_level":"open_access","success":1,"file_id":"14805","date_updated":"2024-01-16T08:35:02Z","file_size":2529327,"content_type":"application/pdf","creator":"dernst","relation":"main_file","date_created":"2024-01-16T08:35:02Z"}]},{"page":"25-60","keyword":["Applied Mathematics","Modeling and Simulation","Statistics and Probability"],"file":[{"file_name":"2023_StochasticProcAppl_Ding.pdf","checksum":"46a708b0cd5569a73d0f3d6c3e0a44dc","access_level":"open_access","success":1,"file_id":"14806","date_updated":"2024-01-16T08:47:31Z","file_size":1870349,"content_type":"application/pdf","creator":"dernst","relation":"main_file","date_created":"2024-01-16T08:47:31Z"}],"external_id":{"arxiv":["2302.13502"],"isi":["001113615900001"]},"date_published":"2023-09-01T00:00:00Z","arxiv":1,"publication_identifier":{"issn":["0304-4149"],"eissn":["1879-209X"]},"day":"01","oa_version":"Published Version","type":"journal_article","date_updated":"2024-01-16T08:49:51Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"Yes (in subscription journal)","acknowledgement":"The authors would like to thank the editor, the associated editor and two anonymous referees for their many critical suggestions which have significantly improved the paper. The authors are also grateful to Zhigang Bao and Ji Oon Lee for many helpful discussions. The first author also wants to thank Hari Bercovici for many useful comments. The first author is partially supported by National Science Foundation DMS-2113489 and the second author is supported by ERC Advanced Grant “RMTBeyond” No. 101020331.","department":[{"_id":"LaEr"}],"has_accepted_license":"1","doi":"10.1016/j.spa.2023.05.009","language":[{"iso":"eng"}],"ec_funded":1,"article_type":"original","publisher":"Elsevier","file_date_updated":"2024-01-16T08:47:31Z","volume":163,"status":"public","month":"09","date_created":"2024-01-10T09:29:25Z","isi":1,"intvolume":"       163","year":"2023","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"quality_controlled":"1","author":[{"full_name":"Ding, Xiucai","first_name":"Xiucai","last_name":"Ding"},{"last_name":"Ji","first_name":"Hong Chang","id":"dd216c0a-c1f9-11eb-beaf-e9ea9d2de76d","full_name":"Ji, Hong Chang"}],"citation":{"apa":"Ding, X., &#38; Ji, H. C. (2023). Spiked multiplicative random matrices and principal components. <i>Stochastic Processes and Their Applications</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.spa.2023.05.009\">https://doi.org/10.1016/j.spa.2023.05.009</a>","mla":"Ding, Xiucai, and Hong Chang Ji. “Spiked Multiplicative Random Matrices and Principal Components.” <i>Stochastic Processes and Their Applications</i>, vol. 163, Elsevier, 2023, pp. 25–60, doi:<a href=\"https://doi.org/10.1016/j.spa.2023.05.009\">10.1016/j.spa.2023.05.009</a>.","short":"X. Ding, H.C. Ji, Stochastic Processes and Their Applications 163 (2023) 25–60.","chicago":"Ding, Xiucai, and Hong Chang Ji. “Spiked Multiplicative Random Matrices and Principal Components.” <i>Stochastic Processes and Their Applications</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.spa.2023.05.009\">https://doi.org/10.1016/j.spa.2023.05.009</a>.","ista":"Ding X, Ji HC. 2023. Spiked multiplicative random matrices and principal components. Stochastic Processes and their Applications. 163, 25–60.","ieee":"X. Ding and H. C. Ji, “Spiked multiplicative random matrices and principal components,” <i>Stochastic Processes and their Applications</i>, vol. 163. Elsevier, pp. 25–60, 2023.","ama":"Ding X, Ji HC. Spiked multiplicative random matrices and principal components. <i>Stochastic Processes and their Applications</i>. 2023;163:25-60. doi:<a href=\"https://doi.org/10.1016/j.spa.2023.05.009\">10.1016/j.spa.2023.05.009</a>"},"abstract":[{"lang":"eng","text":"In this paper, we study the eigenvalues and eigenvectors of the spiked invariant multiplicative models when the randomness is from Haar matrices. We establish the limits of the outlier eigenvalues λˆi and the generalized components (⟨v,uˆi⟩ for any deterministic vector v) of the outlier eigenvectors uˆi with optimal convergence rates. Moreover, we prove that the non-outlier eigenvalues stick with those of the unspiked matrices and the non-outlier eigenvectors are delocalized. The results also hold near the so-called BBP transition and for degenerate spikes. On one hand, our results can be regarded as a refinement of the counterparts of [12] under additional regularity conditions. On the other hand, they can be viewed as an analog of [34] by replacing the random matrix with i.i.d. entries with Haar random matrix."}],"publication_status":"published","project":[{"call_identifier":"H2020","_id":"62796744-2b32-11ec-9570-940b20777f1d","name":"Random matrices beyond Wigner-Dyson-Mehta","grant_number":"101020331"}],"_id":"14780","ddc":["510"],"oa":1,"publication":"Stochastic Processes and their Applications","title":"Spiked multiplicative random matrices and principal components"},{"article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","date_updated":"2024-01-16T08:56:36Z","oa_version":"Preprint","day":"11","doi":"10.1016/j.devcel.2023.06.009","language":[{"iso":"eng"}],"department":[{"_id":"Bio"}],"acknowledgement":"We thank Celeste Brennecka for editing and Michal Reichman-Fried for critical comments on the manuscript. We thank Ursula Jordan, Esther Messerschmidt, and Ines Sandbote for technical assistance. This work was supported by funding from the University of Münster (K.J.W., K.T., E.R., A.G., T.G.-T., J.S., and M.G.), the Max Planck Institute for Molecular Biomedicine (D.Z.), the German Research Foundation grant CRU 326 (P2) RA863/12-2 (E.R.), Baylor University (K.H. and D.R.), and the National Institutes of Health grant R35 GM 134910 (D.R.). We thank the referees for insightful comments that helped improve the manuscript.","date_published":"2023-09-11T00:00:00Z","external_id":{"pmid":["37463577"]},"keyword":["Developmental Biology","Cell Biology","General Biochemistry","Genetics and Molecular Biology","Molecular Biology"],"page":"1578-1592.e5","publication_identifier":{"issn":["1534-5807"]},"main_file_link":[{"url":"https://www.biorxiv.org/content/10.1101/2023.07.09.548244","open_access":"1"}],"citation":{"chicago":"Westerich, Kim Joana, Katsiaryna Tarbashevich, Jan Schick, Antra Gupta, Mingzhao Zhu, Kenneth Hull, Daniel Romo, et al. “Spatial Organization and Function of RNA Molecules within Phase-Separated Condensates in Zebrafish Are Controlled by Dnd1.” <i>Developmental Cell</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.devcel.2023.06.009\">https://doi.org/10.1016/j.devcel.2023.06.009</a>.","short":"K.J. Westerich, K. Tarbashevich, J. Schick, A. Gupta, M. Zhu, K. Hull, D. Romo, D. Zeuschner, M. Goudarzi, T. Gross-Thebing, E. Raz, Developmental Cell 58 (2023) 1578–1592.e5.","ista":"Westerich KJ, Tarbashevich K, Schick J, Gupta A, Zhu M, Hull K, Romo D, Zeuschner D, Goudarzi M, Gross-Thebing T, Raz E. 2023. Spatial organization and function of RNA molecules within phase-separated condensates in zebrafish are controlled by Dnd1. Developmental Cell. 58(17), 1578–1592.e5.","ama":"Westerich KJ, Tarbashevich K, Schick J, et al. Spatial organization and function of RNA molecules within phase-separated condensates in zebrafish are controlled by Dnd1. <i>Developmental Cell</i>. 2023;58(17):1578-1592.e5. doi:<a href=\"https://doi.org/10.1016/j.devcel.2023.06.009\">10.1016/j.devcel.2023.06.009</a>","ieee":"K. J. Westerich <i>et al.</i>, “Spatial organization and function of RNA molecules within phase-separated condensates in zebrafish are controlled by Dnd1,” <i>Developmental Cell</i>, vol. 58, no. 17. Elsevier, p. 1578–1592.e5, 2023.","mla":"Westerich, Kim Joana, et al. “Spatial Organization and Function of RNA Molecules within Phase-Separated Condensates in Zebrafish Are Controlled by Dnd1.” <i>Developmental Cell</i>, vol. 58, no. 17, Elsevier, 2023, p. 1578–1592.e5, doi:<a href=\"https://doi.org/10.1016/j.devcel.2023.06.009\">10.1016/j.devcel.2023.06.009</a>.","apa":"Westerich, K. J., Tarbashevich, K., Schick, J., Gupta, A., Zhu, M., Hull, K., … Raz, E. (2023). Spatial organization and function of RNA molecules within phase-separated condensates in zebrafish are controlled by Dnd1. <i>Developmental Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.devcel.2023.06.009\">https://doi.org/10.1016/j.devcel.2023.06.009</a>"},"author":[{"full_name":"Westerich, Kim Joana","first_name":"Kim Joana","last_name":"Westerich"},{"full_name":"Tarbashevich, Katsiaryna","first_name":"Katsiaryna","last_name":"Tarbashevich"},{"first_name":"Jan","last_name":"Schick","full_name":"Schick, Jan"},{"last_name":"Gupta","first_name":"Antra","full_name":"Gupta, Antra"},{"full_name":"Zhu, Mingzhao","first_name":"Mingzhao","last_name":"Zhu"},{"full_name":"Hull, Kenneth","last_name":"Hull","first_name":"Kenneth"},{"full_name":"Romo, Daniel","first_name":"Daniel","last_name":"Romo"},{"full_name":"Zeuschner, Dagmar","first_name":"Dagmar","last_name":"Zeuschner"},{"full_name":"Goudarzi, Mohammad","id":"3384113A-F248-11E8-B48F-1D18A9856A87","first_name":"Mohammad","last_name":"Goudarzi"},{"full_name":"Gross-Thebing, Theresa","last_name":"Gross-Thebing","first_name":"Theresa"},{"first_name":"Erez","last_name":"Raz","full_name":"Raz, Erez"}],"quality_controlled":"1","year":"2023","title":"Spatial organization and function of RNA molecules within phase-separated condensates in zebrafish are controlled by Dnd1","publication":"Developmental Cell","pmid":1,"oa":1,"_id":"14781","publication_status":"published","abstract":[{"text":"Germ granules, condensates of phase-separated RNA and protein, are organelles that are essential for germline development in different organisms. The patterning of the granules and their relevance for germ cell fate are not fully understood. Combining three-dimensional in vivo structural and functional analyses, we study the dynamic spatial organization of molecules within zebrafish germ granules. We find that the localization of RNA molecules to the periphery of the granules, where ribosomes are localized, depends on translational activity at this location. In addition, we find that the vertebrate-specific Dead end (Dnd1) protein is essential for nanos3 RNA localization at the condensates’ periphery. Accordingly, in the absence of Dnd1, or when translation is inhibited, nanos3 RNA translocates into the granule interior, away from the ribosomes, a process that is correlated with the loss of germ cell fate. These findings highlight the relevance of sub-granule compartmentalization for post-transcriptional control and its importance for preserving germ cell totipotency.","lang":"eng"}],"issue":"17","volume":58,"article_type":"original","publisher":"Elsevier","intvolume":"        58","date_created":"2024-01-10T09:41:21Z","month":"09","status":"public"},{"publication_identifier":{"issn":["0006-3495"]},"page":"2311-2324","keyword":["Biophysics"],"external_id":{"pmid":["36806830"],"isi":["001016792600001"]},"file":[{"date_updated":"2024-01-16T09:09:29Z","file_id":"14807","success":1,"access_level":"open_access","file_name":"2023_BiophysicalJournal_Baldauf.pdf","checksum":"70566e54cd95ea6df340909ad44c5cd5","date_created":"2024-01-16T09:09:29Z","relation":"main_file","content_type":"application/pdf","creator":"dernst","file_size":3285810}],"date_published":"2023-06-06T00:00:00Z","department":[{"_id":"AnSa"}],"has_accepted_license":"1","doi":"10.1016/j.bpj.2023.02.018","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","language":[{"iso":"eng"}],"acknowledgement":"We thank Jeffrey den Haan for protein purification, Kristina Ganzinger (AMOLF) for providing the 10xHis VCA construct, David Kovar (University of Chicago) for the CP constructs, and Michael Way (Crick Institute) for providing purified human Arp2/3 proteins. We are grateful to Iris Lambert for early actin encapsulation experiments that formed the basis for establishing the eDICE method, to Federico Fanalista for acquiring images of dumbbell-shaped GUVs in samples produced by cDICE, and to Tom Aarts for images of dumbbell-shaped GUVs produced by gel-assisted swelling. Lennard van Buren is thanked for his help with image analysis to quantify actin concentrations in GUVs. We thank Kristina Ganzinger (AMOLF) for hosting us to perform pyrene assays in her lab, and Balász Antalicz (AMOLF) for technical assistance with the spectrophotometer. The authors also thank Matthieu Piel and Daniel Fletcher for insightful and inspiring discussions. We acknowledge financial support from The Netherlands Organization of Scientific Research (NWO/OCW) Gravitation program Building a Synthetic Cell (BaSyC) (024.003.019). F.F. gratefully acknowledges funding from the Kavli Synergy program of the Kavli Institute of Nanoscience Delft.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"Yes (in subscription journal)","day":"06","oa_version":"Published Version","type":"journal_article","date_updated":"2024-01-16T09:20:03Z","isi":1,"intvolume":"       122","status":"public","month":"06","date_created":"2024-01-10T09:45:48Z","volume":122,"issue":"11","publisher":"Elsevier","article_type":"original","file_date_updated":"2024-01-16T09:09:29Z","_id":"14782","ddc":["570"],"oa":1,"related_material":{"link":[{"relation":"software","url":"https://github.com/BioSoftMatterGroup/actin-curvature-sensing"}]},"pmid":1,"publication":"Biophysical Journal","title":"Branched actin cortices reconstituted in vesicles sense membrane curvature","abstract":[{"lang":"eng","text":"The actin cortex is a complex cytoskeletal machinery that drives and responds to changes in cell shape. It must generate or adapt to plasma membrane curvature to facilitate diverse functions such as cell division, migration, and phagocytosis. Due to the complex molecular makeup of the actin cortex, it remains unclear whether actin networks are inherently able to sense and generate membrane curvature, or whether they rely on their diverse binding partners to accomplish this. Here, we show that curvature sensing is an inherent capability of branched actin networks nucleated by Arp2/3 and VCA. We develop a robust method to encapsulate actin inside giant unilamellar vesicles (GUVs) and assemble an actin cortex at the inner surface of the GUV membrane. We show that actin forms a uniform and thin cortical layer when present at high concentration and distinct patches associated with negative membrane curvature at low concentration. Serendipitously, we find that the GUV production method also produces dumbbell-shaped GUVs, which we explain using mathematical modeling in terms of membrane hemifusion of nested GUVs. We find that branched actin networks preferentially assemble at the neck of the dumbbells, which possess a micrometer-range convex curvature comparable with the curvature of the actin patches found in spherical GUVs. Minimal branched actin networks can thus sense membrane curvature, which may help mammalian cells to robustly recruit actin to curved membranes to facilitate diverse cellular functions such as cytokinesis and migration."}],"publication_status":"published","quality_controlled":"1","author":[{"full_name":"Baldauf, Lucia","last_name":"Baldauf","first_name":"Lucia"},{"full_name":"Frey, Felix F","id":"a0270b37-8f1a-11ec-95c7-8e710c59a4f3","last_name":"Frey","first_name":"Felix F"},{"full_name":"Arribas Perez, Marcos","last_name":"Arribas Perez","first_name":"Marcos"},{"full_name":"Idema, Timon","last_name":"Idema","first_name":"Timon"},{"first_name":"Gijsje H.","last_name":"Koenderink","full_name":"Koenderink, Gijsje H."}],"citation":{"ama":"Baldauf L, Frey FF, Arribas Perez M, Idema T, Koenderink GH. Branched actin cortices reconstituted in vesicles sense membrane curvature. <i>Biophysical Journal</i>. 2023;122(11):2311-2324. doi:<a href=\"https://doi.org/10.1016/j.bpj.2023.02.018\">10.1016/j.bpj.2023.02.018</a>","ieee":"L. Baldauf, F. F. Frey, M. Arribas Perez, T. Idema, and G. H. Koenderink, “Branched actin cortices reconstituted in vesicles sense membrane curvature,” <i>Biophysical Journal</i>, vol. 122, no. 11. Elsevier, pp. 2311–2324, 2023.","short":"L. Baldauf, F.F. Frey, M. Arribas Perez, T. Idema, G.H. Koenderink, Biophysical Journal 122 (2023) 2311–2324.","chicago":"Baldauf, Lucia, Felix F Frey, Marcos Arribas Perez, Timon Idema, and Gijsje H. Koenderink. “Branched Actin Cortices Reconstituted in Vesicles Sense Membrane Curvature.” <i>Biophysical Journal</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.bpj.2023.02.018\">https://doi.org/10.1016/j.bpj.2023.02.018</a>.","ista":"Baldauf L, Frey FF, Arribas Perez M, Idema T, Koenderink GH. 2023. Branched actin cortices reconstituted in vesicles sense membrane curvature. Biophysical Journal. 122(11), 2311–2324.","apa":"Baldauf, L., Frey, F. F., Arribas Perez, M., Idema, T., &#38; Koenderink, G. H. (2023). Branched actin cortices reconstituted in vesicles sense membrane curvature. <i>Biophysical Journal</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.bpj.2023.02.018\">https://doi.org/10.1016/j.bpj.2023.02.018</a>","mla":"Baldauf, Lucia, et al. “Branched Actin Cortices Reconstituted in Vesicles Sense Membrane Curvature.” <i>Biophysical Journal</i>, vol. 122, no. 11, Elsevier, 2023, pp. 2311–24, doi:<a href=\"https://doi.org/10.1016/j.bpj.2023.02.018\">10.1016/j.bpj.2023.02.018</a>."},"year":"2023","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png"}},{"day":"01","oa_version":"Published Version","type":"journal_article","date_updated":"2023-10-04T09:19:12Z","article_processing_charge":"Yes (via OA deal)","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"The author is grateful to Professors Sergio Albeverio and Andreas Eberle, and to Dr. Kohei Suzuki, for fruitful conversations on the subject of the present work, and for respectively pointing out the references [1, 13], and [3, 20]. Finally, he is especially grateful to an anonymous Reviewer for their very careful reading and their suggestions which improved the readability of the paper.","has_accepted_license":"1","department":[{"_id":"JaMa"}],"language":[{"iso":"eng"}],"doi":"10.1007/s11118-021-09951-y","ec_funded":1,"page":"573-615","external_id":{"isi":["000704213400001"],"arxiv":["2003.01366"]},"file":[{"success":1,"file_id":"14387","date_updated":"2023-10-04T09:18:59Z","file_name":"2023_PotentialAnalysis_DelloSchiavo.pdf","checksum":"625526482be300ca7281c91c30d41725","access_level":"open_access","relation":"main_file","date_created":"2023-10-04T09:18:59Z","creator":"dernst","content_type":"application/pdf","file_size":806391}],"date_published":"2023-03-01T00:00:00Z","arxiv":1,"scopus_import":"1","publication_identifier":{"eissn":["1572-929X"],"issn":["0926-2601"]},"year":"2023","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"quality_controlled":"1","author":[{"orcid":"0000-0002-9881-6870","full_name":"Dello Schiavo, Lorenzo","id":"ECEBF480-9E4F-11EA-B557-B0823DDC885E","first_name":"Lorenzo","last_name":"Dello Schiavo"}],"citation":{"apa":"Dello Schiavo, L. (2023). Ergodic decomposition of Dirichlet forms via direct integrals and applications. <i>Potential Analysis</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11118-021-09951-y\">https://doi.org/10.1007/s11118-021-09951-y</a>","mla":"Dello Schiavo, Lorenzo. “Ergodic Decomposition of Dirichlet Forms via Direct Integrals and Applications.” <i>Potential Analysis</i>, vol. 58, Springer Nature, 2023, pp. 573–615, doi:<a href=\"https://doi.org/10.1007/s11118-021-09951-y\">10.1007/s11118-021-09951-y</a>.","ista":"Dello Schiavo L. 2023. Ergodic decomposition of Dirichlet forms via direct integrals and applications. Potential Analysis. 58, 573–615.","short":"L. Dello Schiavo, Potential Analysis 58 (2023) 573–615.","chicago":"Dello Schiavo, Lorenzo. “Ergodic Decomposition of Dirichlet Forms via Direct Integrals and Applications.” <i>Potential Analysis</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s11118-021-09951-y\">https://doi.org/10.1007/s11118-021-09951-y</a>.","ieee":"L. Dello Schiavo, “Ergodic decomposition of Dirichlet forms via direct integrals and applications,” <i>Potential Analysis</i>, vol. 58. Springer Nature, pp. 573–615, 2023.","ama":"Dello Schiavo L. Ergodic decomposition of Dirichlet forms via direct integrals and applications. <i>Potential Analysis</i>. 2023;58:573-615. doi:<a href=\"https://doi.org/10.1007/s11118-021-09951-y\">10.1007/s11118-021-09951-y</a>"},"abstract":[{"text":"We study direct integrals of quadratic and Dirichlet forms. We show that each quasi-regular Dirichlet space over a probability space admits a unique representation as a direct integral of irreducible Dirichlet spaces, quasi-regular for the same underlying topology. The same holds for each quasi-regular strongly local Dirichlet space over a metrizable Luzin σ-finite Radon measure space, and admitting carré du champ operator. In this case, the representation is only projectively unique.","lang":"eng"}],"publication_status":"published","project":[{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"},{"grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2"},{"grant_number":"716117","name":"Optimal Transport and Stochastic Dynamics","call_identifier":"H2020","_id":"256E75B8-B435-11E9-9278-68D0E5697425"}],"_id":"10145","oa":1,"ddc":["510"],"title":"Ergodic decomposition of Dirichlet forms via direct integrals and applications","publication":"Potential Analysis","article_type":"original","publisher":"Springer Nature","file_date_updated":"2023-10-04T09:18:59Z","volume":58,"status":"public","month":"03","date_created":"2021-10-17T22:01:17Z","isi":1,"intvolume":"        58"},{"citation":{"apa":"Clozeau, N. (2023). Optimal decay of the parabolic semigroup in stochastic homogenization  for correlated coefficient fields. <i>Stochastics and Partial Differential Equations: Analysis and Computations</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s40072-022-00254-w\">https://doi.org/10.1007/s40072-022-00254-w</a>","mla":"Clozeau, Nicolas. “Optimal Decay of the Parabolic Semigroup in Stochastic Homogenization  for Correlated Coefficient Fields.” <i>Stochastics and Partial Differential Equations: Analysis and Computations</i>, vol. 11, Springer Nature, 2023, pp. 1254–1378, doi:<a href=\"https://doi.org/10.1007/s40072-022-00254-w\">10.1007/s40072-022-00254-w</a>.","ieee":"N. Clozeau, “Optimal decay of the parabolic semigroup in stochastic homogenization  for correlated coefficient fields,” <i>Stochastics and Partial Differential Equations: Analysis and Computations</i>, vol. 11. Springer Nature, pp. 1254–1378, 2023.","ama":"Clozeau N. Optimal decay of the parabolic semigroup in stochastic homogenization  for correlated coefficient fields. <i>Stochastics and Partial Differential Equations: Analysis and Computations</i>. 2023;11:1254–1378. doi:<a href=\"https://doi.org/10.1007/s40072-022-00254-w\">10.1007/s40072-022-00254-w</a>","ista":"Clozeau N. 2023. Optimal decay of the parabolic semigroup in stochastic homogenization  for correlated coefficient fields. Stochastics and Partial Differential Equations: Analysis and Computations. 11, 1254–1378.","short":"N. Clozeau, Stochastics and Partial Differential Equations: Analysis and Computations 11 (2023) 1254–1378.","chicago":"Clozeau, Nicolas. “Optimal Decay of the Parabolic Semigroup in Stochastic Homogenization  for Correlated Coefficient Fields.” <i>Stochastics and Partial Differential Equations: Analysis and Computations</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s40072-022-00254-w\">https://doi.org/10.1007/s40072-022-00254-w</a>."},"author":[{"first_name":"Nicolas","last_name":"Clozeau","id":"fea1b376-906f-11eb-847d-b2c0cf46455b","full_name":"Clozeau, Nicolas"}],"quality_controlled":"1","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2023","publication":"Stochastics and Partial Differential Equations: Analysis and Computations","title":"Optimal decay of the parabolic semigroup in stochastic homogenization  for correlated coefficient fields","oa":1,"ddc":["510"],"_id":"10173","publication_status":"published","abstract":[{"lang":"eng","text":"We study the large scale behavior of elliptic systems with stationary random coefficient that have only slowly decaying correlations. To this aim we analyze the so-called corrector equation, a degenerate elliptic equation posed in the probability space. In this contribution, we use a parabolic approach and optimally quantify the time decay of the semigroup. For the theoretical point of view, we prove an optimal decay estimate of the gradient and flux of the corrector when spatially averaged over a scale R larger than 1. For the numerical point of view, our results provide convenient tools for the analysis of various numerical methods."}],"volume":11,"file_date_updated":"2023-08-14T11:51:04Z","article_type":"original","publisher":"Springer Nature","intvolume":"        11","isi":1,"date_created":"2021-10-23T10:50:22Z","month":"09","status":"public","article_processing_charge":"Yes (via OA deal)","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2023-08-14T11:51:47Z","type":"journal_article","oa_version":"Published Version","day":"01","doi":"10.1007/s40072-022-00254-w","language":[{"iso":"eng"}],"has_accepted_license":"1","department":[{"_id":"JuFi"}],"acknowledgement":"I would like to thank my advisor Antoine Gloria for suggesting this problem to me, as well for many interesting discussions and suggestions.\r\nOpen access funding provided by Institute of Science and Technology (IST Austria).","date_published":"2023-09-01T00:00:00Z","file":[{"success":1,"date_updated":"2023-08-14T11:51:04Z","file_id":"14052","checksum":"f83dcaecdbd3ace862c4ed97a20e8501","file_name":"2023_StochPartialDiffEquations_Clozeau.pdf","access_level":"open_access","relation":"main_file","date_created":"2023-08-14T11:51:04Z","creator":"dernst","content_type":"application/pdf","file_size":1635193}],"external_id":{"arxiv":["2102.07452"],"isi":["000799715600001"]},"page":"1254–1378","publication_identifier":{"issn":["2194-0401"]},"scopus_import":"1","arxiv":1},{"project":[{"_id":"258DCDE6-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"338804","name":"Random matrices, universality and disordered quantum systems"},{"call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","grant_number":"665385","name":"International IST Doctoral Program"}],"abstract":[{"lang":"eng","text":"We consider large non-Hermitian random matrices X with complex, independent, identically distributed centred entries and show that the linear statistics of their eigenvalues are asymptotically Gaussian for test functions having 2+ϵ derivatives. Previously this result was known only for a few special cases; either the test functions were required to be analytic [72], or the distribution of the matrix elements needed to be Gaussian [73], or at least match the Gaussian up to the first four moments [82, 56]. We find the exact dependence of the limiting variance on the fourth cumulant that was not known before. The proof relies on two novel ingredients: (i) a local law for a product of two resolvents of the Hermitisation of X with different spectral parameters and (ii) a coupling of several weakly dependent Dyson Brownian motions. These methods are also the key inputs for our analogous results on the linear eigenvalue statistics of real matrices X that are presented in the companion paper [32]. "}],"publication_status":"published","publication":"Communications on Pure and Applied Mathematics","title":"Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices","_id":"10405","oa":1,"ddc":["510"],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png"},"year":"2023","citation":{"chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Central Limit Theorem for Linear Eigenvalue Statistics of Non-Hermitian Random Matrices.” <i>Communications on Pure and Applied Mathematics</i>. Wiley, 2023. <a href=\"https://doi.org/10.1002/cpa.22028\">https://doi.org/10.1002/cpa.22028</a>.","short":"G. Cipolloni, L. Erdös, D.J. Schröder, Communications on Pure and Applied Mathematics 76 (2023) 946–1034.","ista":"Cipolloni G, Erdös L, Schröder DJ. 2023. Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices. Communications on Pure and Applied Mathematics. 76(5), 946–1034.","ama":"Cipolloni G, Erdös L, Schröder DJ. Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices. <i>Communications on Pure and Applied Mathematics</i>. 2023;76(5):946-1034. doi:<a href=\"https://doi.org/10.1002/cpa.22028\">10.1002/cpa.22028</a>","ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices,” <i>Communications on Pure and Applied Mathematics</i>, vol. 76, no. 5. Wiley, pp. 946–1034, 2023.","mla":"Cipolloni, Giorgio, et al. “Central Limit Theorem for Linear Eigenvalue Statistics of Non-Hermitian Random Matrices.” <i>Communications on Pure and Applied Mathematics</i>, vol. 76, no. 5, Wiley, 2023, pp. 946–1034, doi:<a href=\"https://doi.org/10.1002/cpa.22028\">10.1002/cpa.22028</a>.","apa":"Cipolloni, G., Erdös, L., &#38; Schröder, D. J. (2023). Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices. <i>Communications on Pure and Applied Mathematics</i>. Wiley. <a href=\"https://doi.org/10.1002/cpa.22028\">https://doi.org/10.1002/cpa.22028</a>"},"quality_controlled":"1","author":[{"last_name":"Cipolloni","first_name":"Giorgio","id":"42198EFA-F248-11E8-B48F-1D18A9856A87","full_name":"Cipolloni, Giorgio","orcid":"0000-0002-4901-7992"},{"full_name":"Erdös, László","orcid":"0000-0001-5366-9603","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","last_name":"Erdös","first_name":"László"},{"last_name":"Schröder","first_name":"Dominik J","orcid":"0000-0002-2904-1856","full_name":"Schröder, Dominik J","id":"408ED176-F248-11E8-B48F-1D18A9856A87"}],"month":"05","date_created":"2021-12-05T23:01:41Z","status":"public","intvolume":"        76","isi":1,"file_date_updated":"2023-10-04T09:21:48Z","publisher":"Wiley","article_type":"original","volume":76,"issue":"5","acknowledgement":"L.E. would like to thank Nathanaël Berestycki and D.S.would like to thank Nina Holden for valuable discussions on the Gaussian freeﬁeld.G.C. and L.E. are partially supported by ERC Advanced Grant No. 338804.G.C. received funding from the European Union’s Horizon 2020 research and in-novation programme under the Marie Skłodowska-Curie Grant Agreement No.665385. D.S. is supported by Dr. Max Rössler, the Walter Haefner Foundation, and the ETH Zürich Foundation.","ec_funded":1,"department":[{"_id":"LaEr"}],"has_accepted_license":"1","language":[{"iso":"eng"}],"doi":"10.1002/cpa.22028","oa_version":"Published Version","type":"journal_article","date_updated":"2023-10-04T09:22:55Z","day":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"Yes (via OA deal)","arxiv":1,"scopus_import":"1","publication_identifier":{"eissn":["1097-0312"],"issn":["0010-3640"]},"file":[{"date_created":"2023-10-04T09:21:48Z","relation":"main_file","file_size":803440,"content_type":"application/pdf","creator":"dernst","file_id":"14388","date_updated":"2023-10-04T09:21:48Z","success":1,"access_level":"open_access","file_name":"2023_CommPureMathematics_Cipolloni.pdf","checksum":"8346bc2642afb4ccb7f38979f41df5d9"}],"external_id":{"isi":["000724652500001"],"arxiv":["1912.04100"]},"date_published":"2023-05-01T00:00:00Z","page":"946-1034"},{"scopus_import":"1","publication_identifier":{"issn":["0938-8974"],"eissn":["1432-1467"]},"arxiv":1,"external_id":{"isi":["001002343400002"],"arxiv":["2109.12019"]},"file":[{"access_level":"open_access","checksum":"f3f0f0886098e31c81116cff8183750b","file_name":"2023_JourNonlinearScience_Fellner.pdf","file_id":"13149","date_updated":"2023-06-19T07:33:53Z","success":1,"content_type":"application/pdf","creator":"dernst","file_size":742315,"date_created":"2023-06-19T07:33:53Z","relation":"main_file"}],"date_published":"2023-06-07T00:00:00Z","department":[{"_id":"JuFi"}],"has_accepted_license":"1","doi":"10.1007/s00332-023-09926-w","language":[{"iso":"eng"}],"acknowledgement":"We thank the referees for their valuable comments and suggestions. A major part of this work was carried out when B. Q. Tang visited the Institute of Science and Technology Austria (ISTA). The hospitality of ISTA is greatly acknowledged. This work was partially supported by NAWI Graz.\r\nOpen access funding provided by University of Graz.","article_processing_charge":"No","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","day":"07","oa_version":"Published Version","type":"journal_article","date_updated":"2023-08-01T14:40:33Z","isi":1,"intvolume":"        33","article_number":"66","status":"public","month":"06","date_created":"2021-12-16T12:15:35Z","volume":33,"publisher":"Springer Nature","article_type":"original","file_date_updated":"2023-06-19T07:33:53Z","_id":"10550","ddc":["510"],"oa":1,"publication":"Journal of Nonlinear Science","title":"Global renormalised solutions and equilibration of reaction-diffusion systems with non-linear diffusion","abstract":[{"lang":"eng","text":"The global existence of renormalised solutions and convergence to equilibrium for reaction-diffusion systems with non-linear diffusion are investigated. The system is assumed to have quasi-positive non-linearities and to satisfy an entropy inequality. The difficulties in establishing global renormalised solutions caused by possibly degenerate diffusion are overcome by introducing a new class of weighted truncation functions. By means of the obtained global renormalised solutions, we study the large-time behaviour of complex balanced systems arising from chemical reaction network theory with non-linear diffusion. When the reaction network does not admit boundary equilibria, the complex balanced equilibrium is shown, by using the entropy method, to exponentially attract all renormalised solutions in the same compatibility class. This convergence extends even to a range of non-linear diffusion, where global existence is an open problem, yet we are able to show that solutions to approximate systems converge exponentially to equilibrium uniformly in the regularisation parameter."}],"publication_status":"published","author":[{"full_name":"Fellner, Klemens","first_name":"Klemens","last_name":"Fellner"},{"first_name":"Julian L","last_name":"Fischer","full_name":"Fischer, Julian L","orcid":"0000-0002-0479-558X","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Kniely, Michael","orcid":"0000-0001-5645-4333","id":"2CA2C08C-F248-11E8-B48F-1D18A9856A87","last_name":"Kniely","first_name":"Michael"},{"last_name":"Tang","first_name":"Bao Quoc","full_name":"Tang, Bao Quoc"}],"quality_controlled":"1","citation":{"ista":"Fellner K, Fischer JL, Kniely M, Tang BQ. 2023. Global renormalised solutions and equilibration of reaction-diffusion systems with non-linear diffusion. Journal of Nonlinear Science. 33, 66.","chicago":"Fellner, Klemens, Julian L Fischer, Michael Kniely, and Bao Quoc Tang. “Global Renormalised Solutions and Equilibration of Reaction-Diffusion Systems with Non-Linear Diffusion.” <i>Journal of Nonlinear Science</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s00332-023-09926-w\">https://doi.org/10.1007/s00332-023-09926-w</a>.","short":"K. Fellner, J.L. Fischer, M. Kniely, B.Q. Tang, Journal of Nonlinear Science 33 (2023).","ama":"Fellner K, Fischer JL, Kniely M, Tang BQ. Global renormalised solutions and equilibration of reaction-diffusion systems with non-linear diffusion. <i>Journal of Nonlinear Science</i>. 2023;33. doi:<a href=\"https://doi.org/10.1007/s00332-023-09926-w\">10.1007/s00332-023-09926-w</a>","ieee":"K. Fellner, J. L. Fischer, M. Kniely, and B. Q. Tang, “Global renormalised solutions and equilibration of reaction-diffusion systems with non-linear diffusion,” <i>Journal of Nonlinear Science</i>, vol. 33. Springer Nature, 2023.","apa":"Fellner, K., Fischer, J. L., Kniely, M., &#38; Tang, B. Q. (2023). Global renormalised solutions and equilibration of reaction-diffusion systems with non-linear diffusion. <i>Journal of Nonlinear Science</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00332-023-09926-w\">https://doi.org/10.1007/s00332-023-09926-w</a>","mla":"Fellner, Klemens, et al. “Global Renormalised Solutions and Equilibration of Reaction-Diffusion Systems with Non-Linear Diffusion.” <i>Journal of Nonlinear Science</i>, vol. 33, 66, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1007/s00332-023-09926-w\">10.1007/s00332-023-09926-w</a>."},"year":"2023","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"}},{"citation":{"mla":"Cornalba, Federico, and Julian L. Fischer. “The Dean-Kawasaki Equation and the Structure of Density Fluctuations in Systems of Diffusing Particles.” <i>Archive for Rational Mechanics and Analysis</i>, vol. 247, no. 5, 76, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1007/s00205-023-01903-7\">10.1007/s00205-023-01903-7</a>.","apa":"Cornalba, F., &#38; Fischer, J. L. (2023). The Dean-Kawasaki equation and the structure of density fluctuations in systems of diffusing particles. <i>Archive for Rational Mechanics and Analysis</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00205-023-01903-7\">https://doi.org/10.1007/s00205-023-01903-7</a>","short":"F. Cornalba, J.L. Fischer, Archive for Rational Mechanics and Analysis 247 (2023).","chicago":"Cornalba, Federico, and Julian L Fischer. “The Dean-Kawasaki Equation and the Structure of Density Fluctuations in Systems of Diffusing Particles.” <i>Archive for Rational Mechanics and Analysis</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s00205-023-01903-7\">https://doi.org/10.1007/s00205-023-01903-7</a>.","ista":"Cornalba F, Fischer JL. 2023. The Dean-Kawasaki equation and the structure of density fluctuations in systems of diffusing particles. Archive for Rational Mechanics and Analysis. 247(5), 76.","ama":"Cornalba F, Fischer JL. The Dean-Kawasaki equation and the structure of density fluctuations in systems of diffusing particles. <i>Archive for Rational Mechanics and Analysis</i>. 2023;247(5). doi:<a href=\"https://doi.org/10.1007/s00205-023-01903-7\">10.1007/s00205-023-01903-7</a>","ieee":"F. Cornalba and J. L. Fischer, “The Dean-Kawasaki equation and the structure of density fluctuations in systems of diffusing particles,” <i>Archive for Rational Mechanics and Analysis</i>, vol. 247, no. 5. Springer Nature, 2023."},"author":[{"id":"2CEB641C-A400-11E9-A717-D712E6697425","orcid":"0000-0002-6269-5149","full_name":"Cornalba, Federico","last_name":"Cornalba","first_name":"Federico"},{"first_name":"Julian L","last_name":"Fischer","full_name":"Fischer, Julian L","orcid":"0000-0002-0479-558X","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87"}],"quality_controlled":"1","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2023","title":"The Dean-Kawasaki equation and the structure of density fluctuations in systems of diffusing particles","publication":"Archive for Rational Mechanics and Analysis","ddc":["510"],"oa":1,"_id":"10551","project":[{"grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"},{"_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems"}],"publication_status":"published","abstract":[{"lang":"eng","text":"The Dean–Kawasaki equation—a strongly singular SPDE—is a basic equation of fluctuating hydrodynamics; it has been proposed in the physics literature to describe the fluctuations of the density of N independent diffusing particles in the regime of large particle numbers N≫1. The singular nature of the Dean–Kawasaki equation presents a substantial challenge for both its analysis and its rigorous mathematical justification. Besides being non-renormalisable by the theory of regularity structures by Hairer et al., it has recently been shown to not even admit nontrivial martingale solutions. In the present work, we give a rigorous and fully quantitative justification of the Dean–Kawasaki equation by considering the natural regularisation provided by standard numerical discretisations: We show that structure-preserving discretisations of the Dean–Kawasaki equation may approximate the density fluctuations of N non-interacting diffusing particles to arbitrary order in N−1  (in suitable weak metrics). In other words, the Dean–Kawasaki equation may be interpreted as a “recipe” for accurate and efficient numerical simulations of the density fluctuations of independent diffusing particles."}],"issue":"5","volume":247,"file_date_updated":"2024-01-30T12:09:34Z","publisher":"Springer Nature","article_type":"original","intvolume":"       247","isi":1,"date_created":"2021-12-16T12:16:03Z","month":"08","article_number":"76","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"Yes (via OA deal)","type":"journal_article","date_updated":"2024-01-30T12:10:10Z","oa_version":"Published Version","day":"04","ec_funded":1,"language":[{"iso":"eng"}],"doi":"10.1007/s00205-023-01903-7","has_accepted_license":"1","department":[{"_id":"JuFi"}],"acknowledgement":"We thank the anonymous referee for his/her careful reading of the manuscript and valuable suggestions. FC gratefully acknowledges funding from the Austrian Science Fund (FWF) through the project F65, and from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411.\r\nOpen access funding provided by Austrian Science Fund (FWF).","date_published":"2023-08-04T00:00:00Z","external_id":{"arxiv":["2109.06500"],"isi":["001043086800001"]},"file":[{"file_id":"14904","date_updated":"2024-01-30T12:09:34Z","success":1,"access_level":"open_access","checksum":"4529eeff170b6745a461d397ee611b5a","file_name":"2023_ArchiveRationalMech_Cornalba.pdf","date_created":"2024-01-30T12:09:34Z","relation":"main_file","file_size":1851185,"content_type":"application/pdf","creator":"dernst"}],"publication_identifier":{"issn":["0003-9527"],"eissn":["1432-0673"]},"scopus_import":"1","arxiv":1},{"ec_funded":1,"has_accepted_license":"1","department":[{"_id":"KrCh"}],"doi":"10.1007/s13235-022-00425-3","language":[{"iso":"eng"}],"acknowledgement":"The authors would like to acknowledge stimulating email discussions with Dr Wayne Lobb of W.A. Lobb LLC on the topic of evolutionary games. We also thank Dr Thomas Taimre for his input to the material in Sect. 3.\r\nThe authors would like to acknowledge partial support from the Australian Research Council under the Discovery grant DP180101602 and support by the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie Grant Agreement #754411.","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","type":"journal_article","date_updated":"2023-10-04T09:24:30Z","day":"01","scopus_import":"1","publication_identifier":{"eissn":["2153-0793"],"issn":["2153-0785"]},"file":[{"access_level":"open_access","checksum":"cd53b07e96f9030ddb348f305e5b58c7","file_name":"2022_DynamicGamesApplic_Graham.pdf","file_id":"10781","date_updated":"2022-02-21T08:54:17Z","success":1,"file_size":1890512,"creator":"dernst","content_type":"application/pdf","date_created":"2022-02-21T08:54:17Z","relation":"main_file"}],"external_id":{"isi":["000753777100001"]},"date_published":"2023-03-01T00:00:00Z","page":"231-264","publication":"Dynamic Games and Applications","title":"Where do mistakes lead? A survey of games with incompetent players","_id":"10770","oa":1,"ddc":["000"],"project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships"}],"abstract":[{"text":"Mathematical models often aim to describe a complicated mechanism in a cohesive and simple manner. However, reaching perfect balance between being simple enough or overly simplistic is a challenging task. Frequently, game-theoretic models have an underlying assumption that players, whenever they choose to execute a specific action, do so perfectly. In fact, it is rare that action execution perfectly coincides with intentions of individuals, giving rise to behavioural mistakes. The concept of incompetence of players was suggested to address this issue in game-theoretic settings. Under the assumption of incompetence, players have non-zero probabilities of executing a different strategy from the one they chose, leading to stochastic outcomes of the interactions. In this article, we survey results related to the concept of incompetence in classic as well as evolutionary game theory and provide several new results. We also suggest future extensions of the model and argue why it is important to take into account behavioural mistakes when analysing interactions among players in both economic and biological settings.","lang":"eng"}],"publication_status":"published","citation":{"apa":"Graham, T., Kleshnina, M., &#38; Filar, J. A. (2023). Where do mistakes lead? A survey of games with incompetent players. <i>Dynamic Games and Applications</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s13235-022-00425-3\">https://doi.org/10.1007/s13235-022-00425-3</a>","mla":"Graham, Thomas, et al. “Where Do Mistakes Lead? A Survey of Games with Incompetent Players.” <i>Dynamic Games and Applications</i>, vol. 13, Springer Nature, 2023, pp. 231–64, doi:<a href=\"https://doi.org/10.1007/s13235-022-00425-3\">10.1007/s13235-022-00425-3</a>.","ieee":"T. Graham, M. Kleshnina, and J. A. Filar, “Where do mistakes lead? A survey of games with incompetent players,” <i>Dynamic Games and Applications</i>, vol. 13. Springer Nature, pp. 231–264, 2023.","ama":"Graham T, Kleshnina M, Filar JA. Where do mistakes lead? A survey of games with incompetent players. <i>Dynamic Games and Applications</i>. 2023;13:231-264. doi:<a href=\"https://doi.org/10.1007/s13235-022-00425-3\">10.1007/s13235-022-00425-3</a>","short":"T. Graham, M. Kleshnina, J.A. Filar, Dynamic Games and Applications 13 (2023) 231–264.","chicago":"Graham, Thomas, Maria Kleshnina, and Jerzy A. Filar. “Where Do Mistakes Lead? A Survey of Games with Incompetent Players.” <i>Dynamic Games and Applications</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s13235-022-00425-3\">https://doi.org/10.1007/s13235-022-00425-3</a>.","ista":"Graham T, Kleshnina M, Filar JA. 2023. Where do mistakes lead? A survey of games with incompetent players. Dynamic Games and Applications. 13, 231–264."},"quality_controlled":"1","author":[{"full_name":"Graham, Thomas","last_name":"Graham","first_name":"Thomas"},{"id":"4E21749C-F248-11E8-B48F-1D18A9856A87","full_name":"Kleshnina, Maria","last_name":"Kleshnina","first_name":"Maria"},{"first_name":"Jerzy A.","last_name":"Filar","full_name":"Filar, Jerzy A."}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2023","intvolume":"        13","isi":1,"month":"03","date_created":"2022-02-20T23:01:32Z","status":"public","volume":13,"file_date_updated":"2022-02-21T08:54:17Z","publisher":"Springer Nature","article_type":"original"},{"isi":1,"article_number":"15","status":"public","date_created":"2021-07-14T07:01:27Z","month":"11","publisher":"Springer Nature","article_type":"original","oa":1,"_id":"9651","publication":"Geometriae Dedicata","title":"Divergence of separated nets with respect to displacement equivalence","publication_status":"epub_ahead","abstract":[{"text":"We introduce a hierachy of equivalence relations on the set of separated nets of a given Euclidean space, indexed by concave increasing functions ϕ:(0,∞)→(0,∞). Two separated nets are called ϕ-displacement equivalent if, roughly speaking, there is a bijection between them which, for large radii R, displaces points of norm at most R by something of order at most ϕ(R). We show that the spectrum of ϕ-displacement equivalence spans from the established notion of bounded displacement equivalence, which corresponds to bounded ϕ, to the indiscrete equivalence relation, coresponding to ϕ(R)∈Ω(R), in which all separated nets are equivalent. In between the two ends of this spectrum, the notions of ϕ-displacement equivalence are shown to be pairwise distinct with respect to the asymptotic classes of ϕ(R) for R→∞. We further undertake a comparison of our notion of ϕ-displacement equivalence with previously studied relations on separated nets. Particular attention is given to the interaction of the notions of ϕ-displacement equivalence with that of bilipschitz equivalence.","lang":"eng"}],"quality_controlled":"1","author":[{"first_name":"Michael","last_name":"Dymond","full_name":"Dymond, Michael"},{"first_name":"Vojtech","last_name":"Kaluza","full_name":"Kaluza, Vojtech","orcid":"0000-0002-2512-8698","id":"21AE5134-9EAC-11EA-BEA2-D7BD3DDC885E"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1007/s10711-023-00862-3"}],"citation":{"mla":"Dymond, Michael, and Vojtech Kaluza. “Divergence of Separated Nets with Respect to Displacement Equivalence.” <i>Geometriae Dedicata</i>, 15, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1007/s10711-023-00862-3\">10.1007/s10711-023-00862-3</a>.","apa":"Dymond, M., &#38; Kaluza, V. (2023). Divergence of separated nets with respect to displacement equivalence. <i>Geometriae Dedicata</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10711-023-00862-3\">https://doi.org/10.1007/s10711-023-00862-3</a>","chicago":"Dymond, Michael, and Vojtech Kaluza. “Divergence of Separated Nets with Respect to Displacement Equivalence.” <i>Geometriae Dedicata</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s10711-023-00862-3\">https://doi.org/10.1007/s10711-023-00862-3</a>.","short":"M. Dymond, V. Kaluza, Geometriae Dedicata (2023).","ista":"Dymond M, Kaluza V. 2023. Divergence of separated nets with respect to displacement equivalence. Geometriae Dedicata., 15.","ieee":"M. Dymond and V. Kaluza, “Divergence of separated nets with respect to displacement equivalence,” <i>Geometriae Dedicata</i>. Springer Nature, 2023.","ama":"Dymond M, Kaluza V. Divergence of separated nets with respect to displacement equivalence. <i>Geometriae Dedicata</i>. 2023. doi:<a href=\"https://doi.org/10.1007/s10711-023-00862-3\">10.1007/s10711-023-00862-3</a>"},"year":"2023","publication_identifier":{"eissn":["1572-9168"],"issn":["0046-5755"]},"scopus_import":"1","arxiv":1,"date_published":"2023-11-17T00:00:00Z","external_id":{"arxiv":["2102.13046"],"isi":["001105681500001"]},"doi":"10.1007/s10711-023-00862-3","language":[{"iso":"eng"}],"department":[{"_id":"UlWa"}],"acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria). This work was started while both authors were employed at the University of Innsbruck and enjoyed the full support of Austrian Science Fund (FWF): P 30902-N35. It was continued when the first named author was employed at University of Leipzig and the second named author was employed at Institute of Science and Technology of Austria, where he was supported by an IST Fellowship.","article_processing_charge":"Yes (via OA deal)","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","day":"17","type":"journal_article","date_updated":"2024-01-11T13:06:32Z","oa_version":"Published Version"}]
