---
_id: '11509'
abstract:
- lang: eng
  text: We present Keck/LRIS follow-up spectroscopy for 13 photometric candidates
    of extremely metal-poor galaxies (EMPGs) selected by a machine-learning technique
    applied to the deep (∼26 AB mag) optical and wide-area (∼500 deg2) Subaru imaging
    data in the EMPRESS survey. Nine out of the 13 candidates are EMPGs with an oxygen
    abundance (O/H) less than ∼10% solar value (O/H)⊙, and four sources are contaminants
    of moderately metal-rich galaxies or no emission-line objects. Notably, two out
    of the nine EMPGs have extremely low stellar masses and oxygen abundances of 5
    × 10⁴x–7 × -10⁵ M⊙ and 2%–3% (O/H)⊙, respectively. With a sample of five EMPGs
    with (Fe/O) measurements, two (three) of which are taken from this study (the
    literature), we confirm that two EMPGs with the lowest (O/H) ratios of ∼2% (O/H)⊙
    show high (Fe/O) ratios of ∼0.1, close to the solar abundance ratio. Comparing
    galaxy chemical enrichment models, we find that the two EMPGs cannot be explained
    by a scenario of metal-poor gas accretion/episodic star formation history due
    to their low (N/O) ratios. We conclude that the two EMPGs can be reproduced by
    the inclusion of bright hypernovae and/or hypothetical pair-instability supernovae
    (SNe) preferentially produced in a metal-poor environment. This conclusion implies
    that primordial galaxies at z ∼ 10 could have a high abundance of Fe that did
    not originate from Type Ia SNe with delays and that Fe may not serve as a cosmic
    clock for primordial galaxies.
acknowledgement: We thank the referee for the valuable comments. We are also grateful
  to Koh Takahashi, Nozomu Tominaga, Chiaki Kobayashi, Yutaka Hirai, and Daichi Kashino
  for having useful discussions. This paper includes data gathered with the 10 m Keck
  Telescope located at W. M. Keck Observatory, Hawaii. We thank the staff of Keck
  Observatory for their help with the observations. The Hyper Suprime-Cam (HSC) collaboration
  includes the astronomical communities of Japan and Taiwan, and Princeton University.
  The HSC instrumentation and software were developed by the National Astronomical
  Observatory of Japan (NAOJ), the Kavli Institute for the Physics and Mathematics
  of the Universe (Kavli IPMU), the University of Tokyo, the High Energy Accelerator
  Research Organization (KEK), the Academia Sinica Institute for Astronomy and Astrophysics
  in Taiwan (ASIAA), and Princeton University. Based on data collected at the Subaru
  Telescope and retrieved from the HSC data archive system, which is operated by the
  Subaru Telescope and Astronomy Data Center at NAOJ. This work was supported by the
  joint research program of the Institute for Cosmic Ray Research (ICRR), University
  of Tokyo. The Cosmic Dawn Center is funded by the Danish National Research Foundation
  under grant No. 140. S.F. acknowledges support from the European Research Council
  (ERC) Consolidator Grant funding scheme (project ConTExt, grant No. 648179). This
  project has received funding from the European Union’s Horizon 2020 research and
  innovation program under the Marie Sklodowska-Curie grant agreement No. 847523 “INTERACTIONS.”
  This work is supported by World Premier International Research Center Initiative
  (WPI Initiative), MEXT, Japan, as well as the KAKENHI Grant-in-Aid for Scientific
  Research (A; 15H02064, 17H01110, 17H01114, 20H00180, and 21H04467) through the Japan
  Society for the Promotion of Science (JSPS). This work has been supported in part
  by JSPS KAKENHI grant Nos. JP17K05382, JP20K04024, and JP21H04499 (K.N.). Yuki Isobe,
  Kimihiko Nakajima, Yuichi Harikane, Takashi Kojima, and Masato Onodera are supported
  by JSPS KAKENHI grant Nos. 21J20785, 20K22373,19J01222, 18J12840, and 17K14257,
  respectively.
article_number: '111'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Yuki
  full_name: Isobe, Yuki
  last_name: Isobe
- first_name: Masami
  full_name: Ouchi, Masami
  last_name: Ouchi
- first_name: Akihiro
  full_name: Suzuki, Akihiro
  last_name: Suzuki
- first_name: Takashi J.
  full_name: Moriya, Takashi J.
  last_name: Moriya
- first_name: Kimihiko
  full_name: Nakajima, Kimihiko
  last_name: Nakajima
- first_name: Ken’ichi
  full_name: Nomoto, Ken’ichi
  last_name: Nomoto
- first_name: Michael
  full_name: Rauch, Michael
  last_name: Rauch
- first_name: Yuichi
  full_name: Harikane, Yuichi
  last_name: Harikane
- first_name: Takashi
  full_name: Kojima, Takashi
  last_name: Kojima
- first_name: Yoshiaki
  full_name: Ono, Yoshiaki
  last_name: Ono
- first_name: Seiji
  full_name: Fujimoto, Seiji
  last_name: Fujimoto
- first_name: Akio K.
  full_name: Inoue, Akio K.
  last_name: Inoue
- first_name: Ji Hoon
  full_name: Kim, Ji Hoon
  last_name: Kim
- first_name: Yutaka
  full_name: Komiyama, Yutaka
  last_name: Komiyama
- first_name: Haruka
  full_name: Kusakabe, Haruka
  last_name: Kusakabe
- first_name: Chien-Hsiu
  full_name: Lee, Chien-Hsiu
  last_name: Lee
- first_name: Michael
  full_name: Maseda, Michael
  last_name: Maseda
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Leo
  full_name: Michel-Dansac, Leo
  last_name: Michel-Dansac
- first_name: Tohru
  full_name: Nagao, Tohru
  last_name: Nagao
- first_name: Themiya
  full_name: Nanayakkara, Themiya
  last_name: Nanayakkara
- first_name: Moka
  full_name: Nishigaki, Moka
  last_name: Nishigaki
- first_name: Masato
  full_name: Onodera, Masato
  last_name: Onodera
- first_name: Yuma
  full_name: Sugahara, Yuma
  last_name: Sugahara
- first_name: Yi
  full_name: Xu, Yi
  last_name: Xu
citation:
  ama: 'Isobe Y, Ouchi M, Suzuki A, et al. EMPRESS. IV. Extremely metal-poor galaxies
    including very low-mass primordial systems with M∗= 10<sup>4</sup>-10<sup>5</sup>⊙
    and 2%–3% (O/H): High (Fe/O) suggestive of metal enrichment by hypernovae/pair-instability
    supernovae. <i>The Astrophysical Journal</i>. 2022;925(2). doi:<a href="https://doi.org/10.3847/1538-4357/ac3509">10.3847/1538-4357/ac3509</a>'
  apa: 'Isobe, Y., Ouchi, M., Suzuki, A., Moriya, T. J., Nakajima, K., Nomoto, K.,
    … Xu, Y. (2022). EMPRESS. IV. Extremely metal-poor galaxies including very low-mass
    primordial systems with M∗= 10<sup>4</sup>-10<sup>5</sup>⊙ and 2%–3% (O/H): High
    (Fe/O) suggestive of metal enrichment by hypernovae/pair-instability supernovae.
    <i>The Astrophysical Journal</i>. IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ac3509">https://doi.org/10.3847/1538-4357/ac3509</a>'
  chicago: 'Isobe, Yuki, Masami Ouchi, Akihiro Suzuki, Takashi J. Moriya, Kimihiko
    Nakajima, Ken’ichi Nomoto, Michael Rauch, et al. “EMPRESS. IV. Extremely Metal-Poor
    Galaxies Including Very Low-Mass Primordial Systems with M∗= 10<sup>4</sup>-10<sup>5</sup>⊙
    and 2%–3% (O/H): High (Fe/O) Suggestive of Metal Enrichment by Hypernovae/Pair-Instability
    Supernovae.” <i>The Astrophysical Journal</i>. IOP Publishing, 2022. <a href="https://doi.org/10.3847/1538-4357/ac3509">https://doi.org/10.3847/1538-4357/ac3509</a>.'
  ieee: 'Y. Isobe <i>et al.</i>, “EMPRESS. IV. Extremely metal-poor galaxies including
    very low-mass primordial systems with M∗= 10<sup>4</sup>-10<sup>5</sup>⊙ and 2%–3%
    (O/H): High (Fe/O) suggestive of metal enrichment by hypernovae/pair-instability
    supernovae,” <i>The Astrophysical Journal</i>, vol. 925, no. 2. IOP Publishing,
    2022.'
  ista: 'Isobe Y, Ouchi M, Suzuki A, Moriya TJ, Nakajima K, Nomoto K, Rauch M, Harikane
    Y, Kojima T, Ono Y, Fujimoto S, Inoue AK, Kim JH, Komiyama Y, Kusakabe H, Lee
    C-H, Maseda M, Matthee JJ, Michel-Dansac L, Nagao T, Nanayakkara T, Nishigaki
    M, Onodera M, Sugahara Y, Xu Y. 2022. EMPRESS. IV. Extremely metal-poor galaxies
    including very low-mass primordial systems with M∗= 10<sup>4</sup>-10<sup>5</sup>⊙
    and 2%–3% (O/H): High (Fe/O) suggestive of metal enrichment by hypernovae/pair-instability
    supernovae. The Astrophysical Journal. 925(2), 111.'
  mla: 'Isobe, Yuki, et al. “EMPRESS. IV. Extremely Metal-Poor Galaxies Including
    Very Low-Mass Primordial Systems with M∗= 10<sup>4</sup>-10<sup>5</sup>⊙ and 2%–3%
    (O/H): High (Fe/O) Suggestive of Metal Enrichment by Hypernovae/Pair-Instability
    Supernovae.” <i>The Astrophysical Journal</i>, vol. 925, no. 2, 111, IOP Publishing,
    2022, doi:<a href="https://doi.org/10.3847/1538-4357/ac3509">10.3847/1538-4357/ac3509</a>.'
  short: Y. Isobe, M. Ouchi, A. Suzuki, T.J. Moriya, K. Nakajima, K. Nomoto, M. Rauch,
    Y. Harikane, T. Kojima, Y. Ono, S. Fujimoto, A.K. Inoue, J.H. Kim, Y. Komiyama,
    H. Kusakabe, C.-H. Lee, M. Maseda, J.J. Matthee, L. Michel-Dansac, T. Nagao, T.
    Nanayakkara, M. Nishigaki, M. Onodera, Y. Sugahara, Y. Xu, The Astrophysical Journal
    925 (2022).
date_created: 2022-07-06T12:01:48Z
date_published: 2022-01-31T00:00:00Z
date_updated: 2022-07-21T05:51:25Z
day: '31'
doi: 10.3847/1538-4357/ac3509
extern: '1'
external_id:
  arxiv:
  - '2108.03850'
intvolume: '       925'
issue: '2'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2108.03850
month: '01'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'EMPRESS. IV. Extremely metal-poor galaxies including very low-mass primordial
  systems with M∗= 10⁴-10⁵⊙ and 2%–3% (O/H): High (Fe/O) suggestive of metal enrichment
  by hypernovae/pair-instability supernovae'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 925
year: '2022'
...
---
_id: '11510'
abstract:
- lang: eng
  text: Galaxy evolution is driven by a variety of physical processes that are predicted
    to proceed at different rates for different dark matter haloes and environments
    across cosmic times. A record of this evolution is preserved in galaxy stellar
    populations, which we can access using absorption-line spectroscopy. Here we explore
    the large LEGA-C survey (DR3) to investigate the role of the environment and stellar
    mass on stellar populations at z ∼ 0.6–1 in the COSMOS field. Leveraging the statistical
    power and depth of LEGA-C, we reveal significant gradients in Dn4000 and Hδ equivalent
    widths (EWs) distributions over the stellar mass versus environment 2D spaces
    for the massive galaxy population (M > 1010 M⊙) at z ∼ 0.6–1.0. Dn4000 and Hδ
    EWs primarily depend on stellar mass, but they also depend on environment at fixed
    stellar mass. By splitting the sample into centrals and satellites, and in terms
    of star-forming galaxies and quiescent galaxies, we reveal that the significant
    environmental trends of Dn4000 and Hδ EW, when controlling for stellar mass, are
    driven by quiescent galaxies. Regardless of being centrals or satellites, star-forming
    galaxies reveal Dn4000 and Hδ EWs, which depend strongly on their stellar mass
    and are completely independent of the environment at 0.6 < z < 1.0. The environmental
    trends seen for satellite galaxies are fully driven by the trends that hold only
    for quiescent galaxies, combined with the strong environmental dependency of the
    quiescent fraction at fixed stellar mass. Our results are consistent with recent
    predictions from simulations that point toward massive galaxies forming first
    in overdensities or the most compact dark matter haloes.
acknowledgement: We thank the reviewer for several valuable comments that improved
  the clarity of the manuscript. P.F.W. acknowledges the support of the fellowship
  by the East Asian Core Observatories Association. This work is based on observations
  made with ESO VLT Telescopes at the La Silla Paranal Observatory under programmes
  ID 194-A.2005 and 1100.A-0949 (The LEGA-C Public Spectroscopy Survey). This project
  has received funding from the European Research Council (ERC) under the European
  Union—Horizon 2020 research and innovation program (grant agreement No. 683184).
article_number: '117'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: David
  full_name: Sobral, David
  last_name: Sobral
- first_name: Arjen
  full_name: van der Wel, Arjen
  last_name: van der Wel
- first_name: Rachel
  full_name: Bezanson, Rachel
  last_name: Bezanson
- first_name: Eric
  full_name: Bell, Eric
  last_name: Bell
- first_name: Adam
  full_name: Muzzin, Adam
  last_name: Muzzin
- first_name: Francesco
  full_name: D’Eugenio, Francesco
  last_name: D’Eugenio
- first_name: Behnam
  full_name: Darvish, Behnam
  last_name: Darvish
- first_name: Anna
  full_name: Gallazzi, Anna
  last_name: Gallazzi
- first_name: Po-Feng
  full_name: Wu, Po-Feng
  last_name: Wu
- first_name: Michael
  full_name: Maseda, Michael
  last_name: Maseda
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Ana
  full_name: Paulino-Afonso, Ana
  last_name: Paulino-Afonso
- first_name: Caroline
  full_name: Straatman, Caroline
  last_name: Straatman
- first_name: Pieter G.
  full_name: van Dokkum, Pieter G.
  last_name: van Dokkum
citation:
  ama: 'Sobral D, van der Wel A, Bezanson R, et al. The LEGA-C of nature and nurture
    in stellar populations at z ∼ 0.6–1.0: Dn4000 and Hδ reveal different assembly
    histories for quiescent galaxies in different environments. <i>The Astrophysical
    Journal</i>. 2022;926(2). doi:<a href="https://doi.org/10.3847/1538-4357/ac4419">10.3847/1538-4357/ac4419</a>'
  apa: 'Sobral, D., van der Wel, A., Bezanson, R., Bell, E., Muzzin, A., D’Eugenio,
    F., … van Dokkum, P. G. (2022). The LEGA-C of nature and nurture in stellar populations
    at z ∼ 0.6–1.0: Dn4000 and Hδ reveal different assembly histories for quiescent
    galaxies in different environments. <i>The Astrophysical Journal</i>. IOP Publishing.
    <a href="https://doi.org/10.3847/1538-4357/ac4419">https://doi.org/10.3847/1538-4357/ac4419</a>'
  chicago: 'Sobral, David, Arjen van der Wel, Rachel Bezanson, Eric Bell, Adam Muzzin,
    Francesco D’Eugenio, Behnam Darvish, et al. “The LEGA-C of Nature and Nurture
    in Stellar Populations at z ∼ 0.6–1.0: Dn4000 and Hδ Reveal Different Assembly
    Histories for Quiescent Galaxies in Different Environments.” <i>The Astrophysical
    Journal</i>. IOP Publishing, 2022. <a href="https://doi.org/10.3847/1538-4357/ac4419">https://doi.org/10.3847/1538-4357/ac4419</a>.'
  ieee: 'D. Sobral <i>et al.</i>, “The LEGA-C of nature and nurture in stellar populations
    at z ∼ 0.6–1.0: Dn4000 and Hδ reveal different assembly histories for quiescent
    galaxies in different environments,” <i>The Astrophysical Journal</i>, vol. 926,
    no. 2. IOP Publishing, 2022.'
  ista: 'Sobral D, van der Wel A, Bezanson R, Bell E, Muzzin A, D’Eugenio F, Darvish
    B, Gallazzi A, Wu P-F, Maseda M, Matthee JJ, Paulino-Afonso A, Straatman C, van
    Dokkum PG. 2022. The LEGA-C of nature and nurture in stellar populations at z
    ∼ 0.6–1.0: Dn4000 and Hδ reveal different assembly histories for quiescent galaxies
    in different environments. The Astrophysical Journal. 926(2), 117.'
  mla: 'Sobral, David, et al. “The LEGA-C of Nature and Nurture in Stellar Populations
    at z ∼ 0.6–1.0: Dn4000 and Hδ Reveal Different Assembly Histories for Quiescent
    Galaxies in Different Environments.” <i>The Astrophysical Journal</i>, vol. 926,
    no. 2, 117, IOP Publishing, 2022, doi:<a href="https://doi.org/10.3847/1538-4357/ac4419">10.3847/1538-4357/ac4419</a>.'
  short: D. Sobral, A. van der Wel, R. Bezanson, E. Bell, A. Muzzin, F. D’Eugenio,
    B. Darvish, A. Gallazzi, P.-F. Wu, M. Maseda, J.J. Matthee, A. Paulino-Afonso,
    C. Straatman, P.G. van Dokkum, The Astrophysical Journal 926 (2022).
date_created: 2022-07-06T12:38:42Z
date_published: 2022-02-17T00:00:00Z
date_updated: 2022-07-19T09:37:42Z
day: '17'
doi: 10.3847/1538-4357/ac4419
extern: '1'
external_id:
  arxiv:
  - '2112.08372'
intvolume: '       926'
issue: '2'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2112.08372
month: '02'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The LEGA-C of nature and nurture in stellar populations at z ∼ 0.6–1.0: Dn4000
  and Hδ reveal different assembly histories for quiescent galaxies in different environments'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 926
year: '2022'
...
---
_id: '11511'
abstract:
- lang: eng
  text: The ratio of α-elements to iron in galaxies holds valuable information about
    the star formation history (SFH) since their enrichment occurs on different timescales.
    The fossil record of stars in galaxies has mostly been excavated for passive galaxies,
    since the light of star-forming galaxies is dominated by young stars, which have
    much weaker atmospheric absorption features. Here we use the largest reference
    cosmological simulation of the EAGLE project to investigate the origin of variations
    in stellar α-enhancement among star-forming galaxies at z = 0, and their impact
    on integrated spectra. The definition of α-enhancement in a composite stellar
    population is ambiguous. We elucidate two definitions—termed “mean” and “galactic”
    α-enhancement—in more detail. While a star-forming galaxy has a high “mean” α-enhancement
    when its stars formed rapidly, a galaxy with a large “galactic” α-enhancement
    generally had a delayed SFH. We find that absorption-line strengths of Mg and
    Fe correlate with variations in α-enhancement. These correlations are strongest
    for the “galactic” α-enhancement. However, we show that these are mostly caused
    by other effects that are cross-correlated with α-enhancement, such as variations
    in the light-weighted age. This severely complicates the retrieval of α-enhancements
    in star-forming galaxies. The ambiguity is not severe for passive galaxies, and
    we confirm that spectral variations in these galaxies are caused by measurable
    variations in α-enhancements. We suggest that this more complex coupling between
    α-enhancement and SFHs can guide the interpretation of new observations of star-forming
    galaxies.
acknowledgement: "We thank our anonymous referee for the constructive feedback. We
  extend our gratitude to Maarten Baes, Simon Lilly, Rafael Ottersberg, Gabriele Pezzulli,
  Alvio Renzini, and Andrea Weibel for insightful discussions. A.G. gratefully acknowledges
  financial support from the Fund for Scientific Research Flanders (FWO-Vlaanderen,
  project G.0G04.16N). This work used the DiRAC Data Centric system at Durham University,
  operated by the ICC on behalf of the STFC DiRAC HPC Facility (www.dirac.ac.uk).
  This equipment was funded by BIS National E-infrastructure capital grant ST/K00042X/1,
  STFC capital grant ST/H008519/1, and STFC DiRAC Operations grant ST/K003267/1 and
  Durham University. DiRAC is part of the National E-Infrastructure.\r\n\r\nWe have
  benefited from the data analysis tool Topcat (Taylor 2013) and the programming language
  Python, including the numpy (van der Walt et al. 2011), matplotlib (Hunter 2007),
  and scipy (Virtanen et al. 2020) packages."
article_number: '73'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Andrea
  full_name: Gebek, Andrea
  last_name: Gebek
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
citation:
  ama: Gebek A, Matthee JJ. On the variation in stellar α-enhancements of star-forming
    galaxies in the EAGLE simulation. <i>The Astrophysical Journal</i>. 2022;924(2).
    doi:<a href="https://doi.org/10.3847/1538-4357/ac350b">10.3847/1538-4357/ac350b</a>
  apa: Gebek, A., &#38; Matthee, J. J. (2022). On the variation in stellar α-enhancements
    of star-forming galaxies in the EAGLE simulation. <i>The Astrophysical Journal</i>.
    IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ac350b">https://doi.org/10.3847/1538-4357/ac350b</a>
  chicago: Gebek, Andrea, and Jorryt J Matthee. “On the Variation in Stellar α-Enhancements
    of Star-Forming Galaxies in the EAGLE Simulation.” <i>The Astrophysical Journal</i>.
    IOP Publishing, 2022. <a href="https://doi.org/10.3847/1538-4357/ac350b">https://doi.org/10.3847/1538-4357/ac350b</a>.
  ieee: A. Gebek and J. J. Matthee, “On the variation in stellar α-enhancements of
    star-forming galaxies in the EAGLE simulation,” <i>The Astrophysical Journal</i>,
    vol. 924, no. 2. IOP Publishing, 2022.
  ista: Gebek A, Matthee JJ. 2022. On the variation in stellar α-enhancements of star-forming
    galaxies in the EAGLE simulation. The Astrophysical Journal. 924(2), 73.
  mla: Gebek, Andrea, and Jorryt J. Matthee. “On the Variation in Stellar α-Enhancements
    of Star-Forming Galaxies in the EAGLE Simulation.” <i>The Astrophysical Journal</i>,
    vol. 924, no. 2, 73, IOP Publishing, 2022, doi:<a href="https://doi.org/10.3847/1538-4357/ac350b">10.3847/1538-4357/ac350b</a>.
  short: A. Gebek, J.J. Matthee, The Astrophysical Journal 924 (2022).
date_created: 2022-07-06T12:48:32Z
date_published: 2022-01-13T00:00:00Z
date_updated: 2022-07-19T09:38:03Z
day: '13'
doi: 10.3847/1538-4357/ac350b
extern: '1'
external_id:
  arxiv:
  - '2102.04561'
intvolume: '       924'
issue: '2'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2102.04561
month: '01'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the variation in stellar α-enhancements of star-forming galaxies in the
  EAGLE simulation
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 924
year: '2022'
...
---
_id: '11521'
abstract:
- lang: eng
  text: 'The cosmic ionizing emissivity from star-forming galaxies has long been anchored
    to UV luminosity functions. Here, we introduce an emissivity framework based on
    Lyα emitters (LAEs), which naturally hones in on the subset of galaxies responsible
    for the ionizing background due to the intimate connection between production
    and escape of Lyα and LyC photons. Using constraints on the escape fractions of
    bright LAEs (LLyα > 0.2L*) at z ≈ 2 obtained from resolved Lyα profiles, and arguing
    for their redshift-invariance, we show that: (i) quasars and LAEs together reproduce
    the relatively flat emissivity at z ≈ 2–6, which is non-trivial given the strong
    evolution in both the star formation density and quasar number density at these
    epochs and (ii) LAEs produce late and rapid reionization between z ≈ 6−9 under
    plausible assumptions. Within this framework, the >10 × rise in the UV population-averaged
    fesc between z ≈ 3–7 naturally arises due to the same phenomena that drive the
    growing LAE fraction with redshift. Generally, a LAE dominated emissivity yields
    a peak in the distribution of the ionizing budget with UV luminosity as reported
    in latest simulations. Using our adopted parameters (⁠fesc=50 per cent⁠, ξion
    = 1025.9 Hz erg−1 for half the bright LAEs), a highly ionizing minority of galaxies
    with MUV < −17 accounts for the entire ionizing budget from star-forming galaxies.
    Rapid flashes of LyC from such rare galaxies produce a ‘disco’ ionizing background.
    We conclude proposing tests to further develop our suggested Lyα-anchored formalism.'
acknowledgement: We thank an anonymous referee for an encouraging and constructive
  report that helped improving the quality of this work. We acknowledge illuminating
  conversations with Xiaohan Wu, Chris Cain, Anna-Christina Eilers, Simon Lilly and
  Ruari Mackenzie. RPN gratefully acknowledges an Ashford Fellowship granted by Harvard
  University. MG was supported by NASA through the NASA Hubble Fellowship grant HST-HF2-51409.
  PO acknowledges support from the Swiss National Science Foundation through the SNSF
  Professorship grant 190079. GP acknowledges support from the Netherlands Research
  School for Astronomy (NOVA). MH is fellow of the Knut and Alice Wallenberg Foundation.
  DE is supported by the US National Science Foundation (NSF) through Astronomy &
  Astrophysics grant AST-1909198. The Cosmic Dawn Center (DAWN) is funded by the Danish
  National Research Foundation under grant No. 140. RA acknowledges support from Fondecyt
  Regular Grant 1202007. ST is supported by the 2021 Research Fund 1.210134.01 of
  UNIST (Ulsan National Institute of Science & Technology). MLl acknowledges support
  from the ANID/Scholarship Program/Doctorado Nacional/2019-21191036. JC acknowledges
  support from the Spanish Ministry of Science and Innovation, project PID2019-107408GB-C43
  (ESTALLIDOS) and from Gobierno de Canarias through EU FEDER funding, project PID2020010050.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Rohan P.
  full_name: Naidu, Rohan P.
  last_name: Naidu
- first_name: Gabriele
  full_name: Pezzulli, Gabriele
  last_name: Pezzulli
- first_name: Max
  full_name: Gronke, Max
  last_name: Gronke
- first_name: David
  full_name: Sobral, David
  last_name: Sobral
- first_name: Pascal A.
  full_name: Oesch, Pascal A.
  last_name: Oesch
- first_name: Matthew
  full_name: Hayes, Matthew
  last_name: Hayes
- first_name: Dawn
  full_name: Erb, Dawn
  last_name: Erb
- first_name: Daniel
  full_name: Schaerer, Daniel
  last_name: Schaerer
- first_name: Ricardo
  full_name: Amorín, Ricardo
  last_name: Amorín
- first_name: Sandro
  full_name: Tacchella, Sandro
  last_name: Tacchella
- first_name: Ana Paulino-Afonso
  full_name: Ana Paulino-Afonso, Ana Paulino-Afonso
  last_name: Ana Paulino-Afonso
- first_name: Mario
  full_name: Llerena, Mario
  last_name: Llerena
- first_name: João
  full_name: Calhau, João
  last_name: Calhau
- first_name: Huub
  full_name: Röttgering, Huub
  last_name: Röttgering
citation:
  ama: 'Matthee JJ, Naidu RP, Pezzulli G, et al. (Re)Solving reionization with Lyα:
    How bright Lyα emitters account for the z ≈ 2 − 8 cosmic ionizing background.
    <i>Monthly Notices of the Royal Astronomical Society</i>. 2022;512(4):5960-5977.
    doi:<a href="https://doi.org/10.1093/mnras/stac801">10.1093/mnras/stac801</a>'
  apa: 'Matthee, J. J., Naidu, R. P., Pezzulli, G., Gronke, M., Sobral, D., Oesch,
    P. A., … Röttgering, H. (2022). (Re)Solving reionization with Lyα: How bright
    Lyα emitters account for the z ≈ 2 − 8 cosmic ionizing background. <i>Monthly
    Notices of the Royal Astronomical Society</i>. Oxford University Press. <a href="https://doi.org/10.1093/mnras/stac801">https://doi.org/10.1093/mnras/stac801</a>'
  chicago: 'Matthee, Jorryt J, Rohan P. Naidu, Gabriele Pezzulli, Max Gronke, David
    Sobral, Pascal A. Oesch, Matthew Hayes, et al. “(Re)Solving Reionization with
    Lyα: How Bright Lyα Emitters Account for the z ≈ 2 − 8 Cosmic Ionizing Background.”
    <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press,
    2022. <a href="https://doi.org/10.1093/mnras/stac801">https://doi.org/10.1093/mnras/stac801</a>.'
  ieee: 'J. J. Matthee <i>et al.</i>, “(Re)Solving reionization with Lyα: How bright
    Lyα emitters account for the z ≈ 2 − 8 cosmic ionizing background,” <i>Monthly
    Notices of the Royal Astronomical Society</i>, vol. 512, no. 4. Oxford University
    Press, pp. 5960–5977, 2022.'
  ista: 'Matthee JJ, Naidu RP, Pezzulli G, Gronke M, Sobral D, Oesch PA, Hayes M,
    Erb D, Schaerer D, Amorín R, Tacchella S, Ana Paulino-Afonso AP-A, Llerena M,
    Calhau J, Röttgering H. 2022. (Re)Solving reionization with Lyα: How bright Lyα
    emitters account for the z ≈ 2 − 8 cosmic ionizing background. Monthly Notices
    of the Royal Astronomical Society. 512(4), 5960–5977.'
  mla: 'Matthee, Jorryt J., et al. “(Re)Solving Reionization with Lyα: How Bright
    Lyα Emitters Account for the z ≈ 2 − 8 Cosmic Ionizing Background.” <i>Monthly
    Notices of the Royal Astronomical Society</i>, vol. 512, no. 4, Oxford University
    Press, 2022, pp. 5960–77, doi:<a href="https://doi.org/10.1093/mnras/stac801">10.1093/mnras/stac801</a>.'
  short: J.J. Matthee, R.P. Naidu, G. Pezzulli, M. Gronke, D. Sobral, P.A. Oesch,
    M. Hayes, D. Erb, D. Schaerer, R. Amorín, S. Tacchella, A.P.-A. Ana Paulino-Afonso,
    M. Llerena, J. Calhau, H. Röttgering, Monthly Notices of the Royal Astronomical
    Society 512 (2022) 5960–5977.
date_created: 2022-07-07T09:21:30Z
date_published: 2022-06-01T00:00:00Z
date_updated: 2022-08-18T10:42:47Z
day: '01'
doi: 10.1093/mnras/stac801
extern: '1'
external_id:
  arxiv:
  - '2110.11967'
intvolume: '       512'
issue: '4'
keyword:
- 'galaxies: high-redshift'
- intergalactic medium
- 'cosmology: observations'
- dark ages
- reionization
- first stars
- 'ultraviolet: galaxies'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2110.11967
month: '06'
oa: 1
oa_version: Preprint
page: 5960-5977
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  eissn:
  - 1365-2966
  issn:
  - 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: '(Re)Solving reionization with Lyα: How bright Lyα emitters account for the
  z ≈ 2 − 8 cosmic ionizing background'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 512
year: '2022'
...
---
_id: '11542'
article_processing_charge: No
author:
- first_name: Rouven
  full_name: Schulz, Rouven
  id: 4C5E7B96-F248-11E8-B48F-1D18A9856A87
  last_name: Schulz
  orcid: 0000-0001-5297-733X
citation:
  ama: Schulz R. Source Data (Chimeric GPCRs mimic distinct signaling pathways and
    modulate microglia responses). 2022. doi:<a href="https://doi.org/10.15479/AT:ISTA:11542">10.15479/AT:ISTA:11542</a>
  apa: Schulz, R. (2022). Source Data (Chimeric GPCRs mimic distinct signaling pathways
    and modulate microglia responses). Institute of Science and Technology Austria.
    <a href="https://doi.org/10.15479/AT:ISTA:11542">https://doi.org/10.15479/AT:ISTA:11542</a>
  chicago: Schulz, Rouven. “Source Data (Chimeric GPCRs Mimic Distinct Signaling Pathways
    and Modulate Microglia Responses).” Institute of Science and Technology Austria,
    2022. <a href="https://doi.org/10.15479/AT:ISTA:11542">https://doi.org/10.15479/AT:ISTA:11542</a>.
  ieee: R. Schulz, “Source Data (Chimeric GPCRs mimic distinct signaling pathways
    and modulate microglia responses).” Institute of Science and Technology Austria,
    2022.
  ista: Schulz R. 2022. Source Data (Chimeric GPCRs mimic distinct signaling pathways
    and modulate microglia responses), Institute of Science and Technology Austria,
    <a href="https://doi.org/10.15479/AT:ISTA:11542">10.15479/AT:ISTA:11542</a>.
  mla: Schulz, Rouven. <i>Source Data (Chimeric GPCRs Mimic Distinct Signaling Pathways
    and Modulate Microglia Responses)</i>. Institute of Science and Technology Austria,
    2022, doi:<a href="https://doi.org/10.15479/AT:ISTA:11542">10.15479/AT:ISTA:11542</a>.
  short: R. Schulz, (2022).
contributor:
- contributor_type: contact_person
  first_name: Sandra
  id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
  last_name: Siegert
  orcid: 0000-0001-8635-0877
date_created: 2022-07-08T11:03:02Z
date_published: 2022-01-01T00:00:00Z
date_updated: 2024-02-21T12:34:51Z
department:
- _id: GradSch
- _id: SaSi
doi: 10.15479/AT:ISTA:11542
file:
- access_level: open_access
  checksum: 71e8186583f3adbb6c69a88ac9e6e49b
  content_type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
  creator: rschulz
  date_created: 2022-07-08T10:56:52Z
  date_updated: 2022-07-08T10:56:52Z
  file_id: '11543'
  file_name: Source Data.xlsx
  file_size: 135784571
  relation: main_file
  success: 1
file_date_updated: 2022-07-08T10:56:52Z
has_accepted_license: '1'
oa: 1
oa_version: None
publisher: Institute of Science and Technology Austria
related_material:
  link:
  - relation: contains
    url: https://www.biorxiv.org/content/10.1101/2021.06.21.449162v1
  record:
  - id: '11995'
    relation: used_in_publication
    status: public
status: public
title: Source Data (Chimeric GPCRs mimic distinct signaling pathways and modulate
  microglia responses)
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '11545'
abstract:
- lang: eng
  text: "We classify contravariant pairings between standard Whittaker modules and
    Verma modules over a complex semisimple Lie algebra. These contravariant pairings
    are useful in extending several classical techniques for category O to the Miličić–Soergel
    category N . We introduce a class of costandard modules which generalize dual
    Verma modules, and describe canonical maps from standard to costandard modules
    in terms of contravariant pairings.\r\nWe show that costandard modules have unique
    irreducible submodules and share the same composition factors as the corresponding
    standard Whittaker modules. We show that costandard modules give an algebraic
    characterization of the global sections of costandard twisted Harish-Chandra sheaves
    on the associated flag variety, which are defined using holonomic duality of D-modules.
    We prove that with these costandard modules, blocks of category\r\nN have the
    structure of highest weight categories and we establish a BGG reciprocity theorem
    for N ."
acknowledgement: We thank Catharina Stroppel and Jens Niklas Eberhardt for interesting
  discussions. The first author acknowledges the support of the European Union's Horizon
  2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement
  No. 754411. The second author is supported by the National Science Foundation Award
  No. 1803059 and the Australian Research Council grant DP170101579.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Adam
  full_name: Brown, Adam
  id: 70B7FDF6-608D-11E9-9333-8535E6697425
  last_name: Brown
- first_name: Anna
  full_name: Romanov, Anna
  last_name: Romanov
citation:
  ama: Brown A, Romanov A. Contravariant pairings between standard Whittaker modules
    and Verma modules. <i>Journal of Algebra</i>. 2022;609(11):145-179. doi:<a href="https://doi.org/10.1016/j.jalgebra.2022.06.017">10.1016/j.jalgebra.2022.06.017</a>
  apa: Brown, A., &#38; Romanov, A. (2022). Contravariant pairings between standard
    Whittaker modules and Verma modules. <i>Journal of Algebra</i>. Elsevier. <a href="https://doi.org/10.1016/j.jalgebra.2022.06.017">https://doi.org/10.1016/j.jalgebra.2022.06.017</a>
  chicago: Brown, Adam, and Anna Romanov. “Contravariant Pairings between Standard
    Whittaker Modules and Verma Modules.” <i>Journal of Algebra</i>. Elsevier, 2022.
    <a href="https://doi.org/10.1016/j.jalgebra.2022.06.017">https://doi.org/10.1016/j.jalgebra.2022.06.017</a>.
  ieee: A. Brown and A. Romanov, “Contravariant pairings between standard Whittaker
    modules and Verma modules,” <i>Journal of Algebra</i>, vol. 609, no. 11. Elsevier,
    pp. 145–179, 2022.
  ista: Brown A, Romanov A. 2022. Contravariant pairings between standard Whittaker
    modules and Verma modules. Journal of Algebra. 609(11), 145–179.
  mla: Brown, Adam, and Anna Romanov. “Contravariant Pairings between Standard Whittaker
    Modules and Verma Modules.” <i>Journal of Algebra</i>, vol. 609, no. 11, Elsevier,
    2022, pp. 145–79, doi:<a href="https://doi.org/10.1016/j.jalgebra.2022.06.017">10.1016/j.jalgebra.2022.06.017</a>.
  short: A. Brown, A. Romanov, Journal of Algebra 609 (2022) 145–179.
date_created: 2022-07-08T11:40:07Z
date_published: 2022-11-01T00:00:00Z
date_updated: 2023-08-03T11:56:30Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1016/j.jalgebra.2022.06.017
ec_funded: 1
external_id:
  isi:
  - '000861841100004'
file:
- access_level: open_access
  checksum: 82abaee3d7837f703e499a9ecbb25b7c
  content_type: application/pdf
  creator: dernst
  date_created: 2023-02-02T07:32:48Z
  date_updated: 2023-02-02T07:32:48Z
  file_id: '12473'
  file_name: 2022_JournalAlgebra_Brown.pdf
  file_size: 582962
  relation: main_file
  success: 1
file_date_updated: 2023-02-02T07:32:48Z
has_accepted_license: '1'
intvolume: '       609'
isi: 1
issue: '11'
keyword:
- Algebra and Number Theory
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 145-179
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Journal of Algebra
publication_identifier:
  issn:
  - 0021-8693
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Contravariant pairings between standard Whittaker modules and Verma modules
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 609
year: '2022'
...
---
_id: '11546'
abstract:
- lang: eng
  text: Local adaptation leads to differences between populations within a species.
    In many systems, similar environmental contrasts occur repeatedly, sometimes driving
    parallel phenotypic evolution. Understanding the genomic basis of local adaptation
    and parallel evolution is a major goal of evolutionary genomics. It is now known
    that by preventing the break-up of favourable combinations of alleles across multiple
    loci, genetic architectures that reduce recombination, like chromosomal inversions,
    can make an important contribution to local adaptation. However, little is known
    about whether inversions also contribute disproportionately to parallel evolution.
    Our aim here is to highlight this knowledge gap, to showcase existing studies,
    and to illustrate the differences between genomic architectures with and without
    inversions using simple models. We predict that by generating stronger effective
    selection, inversions can sometimes speed up the parallel adaptive process or
    enable parallel adaptation where it would be impossible otherwise, but this is
    highly dependent on the spatial setting. We highlight that further empirical work
    is needed, in particular to cover a broader taxonomic range and to understand
    the relative importance of inversions compared to genomic regions without inversions.
acknowledgement: We thank the editor and two anonymous reviewers for their helpful
  and interesting comments on this manuscript.
article_number: '20210203'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Anja M
  full_name: Westram, Anja M
  id: 3C147470-F248-11E8-B48F-1D18A9856A87
  last_name: Westram
  orcid: 0000-0003-1050-4969
- first_name: Rui
  full_name: Faria, Rui
  last_name: Faria
- first_name: Kerstin
  full_name: Johannesson, Kerstin
  last_name: Johannesson
- first_name: Roger
  full_name: Butlin, Roger
  last_name: Butlin
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: 'Westram AM, Faria R, Johannesson K, Butlin R, Barton NH. Inversions and parallel
    evolution. <i>Philosophical Transactions of the Royal Society B: Biological Sciences</i>.
    2022;377(1856). doi:<a href="https://doi.org/10.1098/rstb.2021.0203">10.1098/rstb.2021.0203</a>'
  apa: 'Westram, A. M., Faria, R., Johannesson, K., Butlin, R., &#38; Barton, N. H.
    (2022). Inversions and parallel evolution. <i>Philosophical Transactions of the
    Royal Society B: Biological Sciences</i>. Royal Society of London. <a href="https://doi.org/10.1098/rstb.2021.0203">https://doi.org/10.1098/rstb.2021.0203</a>'
  chicago: 'Westram, Anja M, Rui Faria, Kerstin Johannesson, Roger Butlin, and Nicholas
    H Barton. “Inversions and Parallel Evolution.” <i>Philosophical Transactions of
    the Royal Society B: Biological Sciences</i>. Royal Society of London, 2022. <a
    href="https://doi.org/10.1098/rstb.2021.0203">https://doi.org/10.1098/rstb.2021.0203</a>.'
  ieee: 'A. M. Westram, R. Faria, K. Johannesson, R. Butlin, and N. H. Barton, “Inversions
    and parallel evolution,” <i>Philosophical Transactions of the Royal Society B:
    Biological Sciences</i>, vol. 377, no. 1856. Royal Society of London, 2022.'
  ista: 'Westram AM, Faria R, Johannesson K, Butlin R, Barton NH. 2022. Inversions
    and parallel evolution. Philosophical Transactions of the Royal Society B: Biological
    Sciences. 377(1856), 20210203.'
  mla: 'Westram, Anja M., et al. “Inversions and Parallel Evolution.” <i>Philosophical
    Transactions of the Royal Society B: Biological Sciences</i>, vol. 377, no. 1856,
    20210203, Royal Society of London, 2022, doi:<a href="https://doi.org/10.1098/rstb.2021.0203">10.1098/rstb.2021.0203</a>.'
  short: 'A.M. Westram, R. Faria, K. Johannesson, R. Butlin, N.H. Barton, Philosophical
    Transactions of the Royal Society B: Biological Sciences 377 (2022).'
date_created: 2022-07-08T11:41:56Z
date_published: 2022-08-01T00:00:00Z
date_updated: 2023-08-03T11:55:42Z
day: '01'
ddc:
- '570'
department:
- _id: BeVi
- _id: NiBa
doi: 10.1098/rstb.2021.0203
external_id:
  isi:
  - '000812317300005'
file:
- access_level: open_access
  checksum: 49f69428f3dcf5ce3ff281f7d199e9df
  content_type: application/pdf
  creator: dernst
  date_created: 2023-02-02T08:20:29Z
  date_updated: 2023-02-02T08:20:29Z
  file_id: '12479'
  file_name: 2022_PhilosophicalTransactionsB_Westram.pdf
  file_size: 920304
  relation: main_file
  success: 1
file_date_updated: 2023-02-02T08:20:29Z
has_accepted_license: '1'
intvolume: '       377'
isi: 1
issue: '1856'
keyword:
- General Agricultural and Biological Sciences
- General Biochemistry
- Genetics and Molecular Biology
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 05959E1C-7A3F-11EA-A408-12923DDC885E
  grant_number: P32166
  name: The maintenance of alternative adaptive peaks in snapdragons
publication: 'Philosophical Transactions of the Royal Society B: Biological Sciences'
publication_identifier:
  eissn:
  - 1471-2970
  issn:
  - 0962-8436
publication_status: published
publisher: Royal Society of London
quality_controlled: '1'
scopus_import: '1'
status: public
title: Inversions and parallel evolution
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 377
year: '2022'
...
---
_id: '11551'
abstract:
- lang: eng
  text: Imbalanced mitochondrial dNTP pools are known players in the pathogenesis
    of multiple human diseases. Here we show that, even under physiological conditions,
    dGTP is largely overrepresented among other dNTPs in mitochondria of mouse tissues
    and human cultured cells. In addition, a vast majority of mitochondrial dGTP is
    tightly bound to NDUFA10, an accessory subunit of complex I of the mitochondrial
    respiratory chain. NDUFA10 shares a deoxyribonucleoside kinase (dNK) domain with
    deoxyribonucleoside kinases in the nucleotide salvage pathway, though no specific
    function beyond stabilizing the complex I holoenzyme has been described for this
    subunit. We mutated the dNK domain of NDUFA10 in human HEK-293T cells while preserving
    complex I assembly and activity. The NDUFA10E160A/R161A shows reduced dGTP binding
    capacity in vitro and leads to a 50% reduction in mitochondrial dGTP content,
    proving that most dGTP is directly bound to the dNK domain of NDUFA10. This interaction
    may represent a hitherto unknown mechanism regulating mitochondrial dNTP availability
    and linking oxidative metabolism to DNA maintenance.
acknowledgement: "We thank Dr, Luke Formosa (Department of Biochemistry and Molecular
  Biology, Monash Biomedicine Discovery Institute, Monash University, Melbourne, Australia)
  for his valuable advice and assistance on NDUFA10 molecular studies and Dr. Francesc
  Canals and his team (Proteomics Laboratory, Vall d’Hebron Institute of Oncology
  [VHIO], Universitat Autònoma de Barcelona, Barcelona, Spain) for their assistance
  with LC-MS/MS analyses. This work was supported by the Spanish Ministry of Industry,
  Economy and Competitiveness [grants BFU2014-52618-R, SAF2017-87506, and PID2020-112929RB-I00
  to Y.C.], by the Spanish Instituto de Salud Carlos III [grants PI21/00554 and PMP15/00025
  to R.M.], co-financed by the European Regional Development Fund (ERDF), and by an
  NHMRC Project grant to M.R. (GNT1164459).\r\n"
article_number: '620'
article_processing_charge: No
author:
- first_name: David
  full_name: Molina-Granada, David
  last_name: Molina-Granada
- first_name: Emiliano
  full_name: González-Vioque, Emiliano
  last_name: González-Vioque
- first_name: Marris G.
  full_name: Dibley, Marris G.
  last_name: Dibley
- first_name: Raquel
  full_name: Cabrera-Pérez, Raquel
  last_name: Cabrera-Pérez
- first_name: Antoni
  full_name: Vallbona-Garcia, Antoni
  last_name: Vallbona-Garcia
- first_name: Javier
  full_name: Torres-Torronteras, Javier
  last_name: Torres-Torronteras
- first_name: Leonid A
  full_name: Sazanov, Leonid A
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
- first_name: Michael T.
  full_name: Ryan, Michael T.
  last_name: Ryan
- first_name: Yolanda
  full_name: Cámara, Yolanda
  last_name: Cámara
- first_name: Ramon
  full_name: Martí, Ramon
  last_name: Martí
citation:
  ama: Molina-Granada D, González-Vioque E, Dibley MG, et al. Most mitochondrial dGTP
    is tightly bound to respiratory complex I through the NDUFA10 subunit. <i>Communications
    Biology</i>. 2022;5(1). doi:<a href="https://doi.org/10.1038/s42003-022-03568-6">10.1038/s42003-022-03568-6</a>
  apa: Molina-Granada, D., González-Vioque, E., Dibley, M. G., Cabrera-Pérez, R.,
    Vallbona-Garcia, A., Torres-Torronteras, J., … Martí, R. (2022). Most mitochondrial
    dGTP is tightly bound to respiratory complex I through the NDUFA10 subunit. <i>Communications
    Biology</i>. Springer Nature. <a href="https://doi.org/10.1038/s42003-022-03568-6">https://doi.org/10.1038/s42003-022-03568-6</a>
  chicago: Molina-Granada, David, Emiliano González-Vioque, Marris G. Dibley, Raquel
    Cabrera-Pérez, Antoni Vallbona-Garcia, Javier Torres-Torronteras, Leonid A Sazanov,
    Michael T. Ryan, Yolanda Cámara, and Ramon Martí. “Most Mitochondrial DGTP Is
    Tightly Bound to Respiratory Complex I through the NDUFA10 Subunit.” <i>Communications
    Biology</i>. Springer Nature, 2022. <a href="https://doi.org/10.1038/s42003-022-03568-6">https://doi.org/10.1038/s42003-022-03568-6</a>.
  ieee: D. Molina-Granada <i>et al.</i>, “Most mitochondrial dGTP is tightly bound
    to respiratory complex I through the NDUFA10 subunit,” <i>Communications Biology</i>,
    vol. 5, no. 1. Springer Nature, 2022.
  ista: Molina-Granada D, González-Vioque E, Dibley MG, Cabrera-Pérez R, Vallbona-Garcia
    A, Torres-Torronteras J, Sazanov LA, Ryan MT, Cámara Y, Martí R. 2022. Most mitochondrial
    dGTP is tightly bound to respiratory complex I through the NDUFA10 subunit. Communications
    Biology. 5(1), 620.
  mla: Molina-Granada, David, et al. “Most Mitochondrial DGTP Is Tightly Bound to
    Respiratory Complex I through the NDUFA10 Subunit.” <i>Communications Biology</i>,
    vol. 5, no. 1, 620, Springer Nature, 2022, doi:<a href="https://doi.org/10.1038/s42003-022-03568-6">10.1038/s42003-022-03568-6</a>.
  short: D. Molina-Granada, E. González-Vioque, M.G. Dibley, R. Cabrera-Pérez, A.
    Vallbona-Garcia, J. Torres-Torronteras, L.A. Sazanov, M.T. Ryan, Y. Cámara, R.
    Martí, Communications Biology 5 (2022).
date_created: 2022-07-10T22:01:52Z
date_published: 2022-06-23T00:00:00Z
date_updated: 2023-08-03T11:51:58Z
day: '23'
ddc:
- '570'
department:
- _id: LeSa
doi: 10.1038/s42003-022-03568-6
external_id:
  isi:
  - '000815098500002'
  pmid:
  - ' 35739187'
file:
- access_level: open_access
  checksum: 965f88bbcef3fd0c3e121340555c4467
  content_type: application/pdf
  creator: kschuh
  date_created: 2022-07-13T07:44:58Z
  date_updated: 2022-07-13T07:44:58Z
  file_id: '11571'
  file_name: 2022_communicationsbiology_Molina-Granada.pdf
  file_size: 2335369
  relation: main_file
  success: 1
file_date_updated: 2022-07-13T07:44:58Z
has_accepted_license: '1'
intvolume: '         5'
isi: 1
issue: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
publication: Communications Biology
publication_identifier:
  eissn:
  - '23993642'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Most mitochondrial dGTP is tightly bound to respiratory complex I through the
  NDUFA10 subunit
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 5
year: '2022'
...
---
_id: '11552'
abstract:
- lang: eng
  text: Rotational dynamics of D2 molecules inside helium nanodroplets is induced
    by a moderately intense femtosecond pump pulse and measured as a function of time
    by recording the yield of HeD+ ions, created through strong-field dissociative
    ionization with a delayed femtosecond probe pulse. The yield oscillates with a
    period of 185 fs, reflecting field-free rotational wave packet dynamics, and the
    oscillation persists for more than 500 periods. Within the experimental uncertainty,
    the rotational constant BHe of the in-droplet D2 molecule, determined by Fourier
    analysis, is the same as Bgas for an isolated D2 molecule. Our observations show
    that the D2 molecules inside helium nanodroplets essentially rotate as free D2
    molecules.
article_number: '243201'
article_processing_charge: No
arxiv: 1
author:
- first_name: Junjie
  full_name: Qiang, Junjie
  last_name: Qiang
- first_name: Lianrong
  full_name: Zhou, Lianrong
  last_name: Zhou
- first_name: Peifen
  full_name: Lu, Peifen
  last_name: Lu
- first_name: Kang
  full_name: Lin, Kang
  last_name: Lin
- first_name: Yongzhe
  full_name: Ma, Yongzhe
  last_name: Ma
- first_name: Shengzhe
  full_name: Pan, Shengzhe
  last_name: Pan
- first_name: Chenxu
  full_name: Lu, Chenxu
  last_name: Lu
- first_name: Wenyu
  full_name: Jiang, Wenyu
  last_name: Jiang
- first_name: Fenghao
  full_name: Sun, Fenghao
  last_name: Sun
- first_name: Wenbin
  full_name: Zhang, Wenbin
  last_name: Zhang
- first_name: Hui
  full_name: Li, Hui
  last_name: Li
- first_name: Xiaochun
  full_name: Gong, Xiaochun
  last_name: Gong
- first_name: Ilya Sh
  full_name: Averbukh, Ilya Sh
  last_name: Averbukh
- first_name: Yehiam
  full_name: Prior, Yehiam
  last_name: Prior
- first_name: Constant A.
  full_name: Schouder, Constant A.
  last_name: Schouder
- first_name: Henrik
  full_name: Stapelfeldt, Henrik
  last_name: Stapelfeldt
- first_name: Igor
  full_name: Cherepanov, Igor
  id: 339C7E5A-F248-11E8-B48F-1D18A9856A87
  last_name: Cherepanov
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Wolfgang
  full_name: Jäger, Wolfgang
  last_name: Jäger
- first_name: Jian
  full_name: Wu, Jian
  last_name: Wu
citation:
  ama: Qiang J, Zhou L, Lu P, et al. Femtosecond rotational dynamics of D2 molecules
    in superfluid helium nanodroplets. <i>Physical Review Letters</i>. 2022;128(24).
    doi:<a href="https://doi.org/10.1103/PhysRevLett.128.243201">10.1103/PhysRevLett.128.243201</a>
  apa: Qiang, J., Zhou, L., Lu, P., Lin, K., Ma, Y., Pan, S., … Wu, J. (2022). Femtosecond
    rotational dynamics of D2 molecules in superfluid helium nanodroplets. <i>Physical
    Review Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.128.243201">https://doi.org/10.1103/PhysRevLett.128.243201</a>
  chicago: Qiang, Junjie, Lianrong Zhou, Peifen Lu, Kang Lin, Yongzhe Ma, Shengzhe
    Pan, Chenxu Lu, et al. “Femtosecond Rotational Dynamics of D2 Molecules in Superfluid
    Helium Nanodroplets.” <i>Physical Review Letters</i>. American Physical Society,
    2022. <a href="https://doi.org/10.1103/PhysRevLett.128.243201">https://doi.org/10.1103/PhysRevLett.128.243201</a>.
  ieee: J. Qiang <i>et al.</i>, “Femtosecond rotational dynamics of D2 molecules in
    superfluid helium nanodroplets,” <i>Physical Review Letters</i>, vol. 128, no.
    24. American Physical Society, 2022.
  ista: Qiang J, Zhou L, Lu P, Lin K, Ma Y, Pan S, Lu C, Jiang W, Sun F, Zhang W,
    Li H, Gong X, Averbukh IS, Prior Y, Schouder CA, Stapelfeldt H, Cherepanov I,
    Lemeshko M, Jäger W, Wu J. 2022. Femtosecond rotational dynamics of D2 molecules
    in superfluid helium nanodroplets. Physical Review Letters. 128(24), 243201.
  mla: Qiang, Junjie, et al. “Femtosecond Rotational Dynamics of D2 Molecules in Superfluid
    Helium Nanodroplets.” <i>Physical Review Letters</i>, vol. 128, no. 24, 243201,
    American Physical Society, 2022, doi:<a href="https://doi.org/10.1103/PhysRevLett.128.243201">10.1103/PhysRevLett.128.243201</a>.
  short: J. Qiang, L. Zhou, P. Lu, K. Lin, Y. Ma, S. Pan, C. Lu, W. Jiang, F. Sun,
    W. Zhang, H. Li, X. Gong, I.S. Averbukh, Y. Prior, C.A. Schouder, H. Stapelfeldt,
    I. Cherepanov, M. Lemeshko, W. Jäger, J. Wu, Physical Review Letters 128 (2022).
date_created: 2022-07-10T22:01:52Z
date_published: 2022-06-16T00:00:00Z
date_updated: 2023-08-03T11:54:14Z
day: '16'
department:
- _id: MiLe
doi: 10.1103/PhysRevLett.128.243201
ec_funded: 1
external_id:
  arxiv:
  - '2201.09281'
  isi:
  - '000820659700002'
intvolume: '       128'
isi: 1
issue: '24'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2201.09281
month: '06'
oa: 1
oa_version: Submitted Version
project:
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '801770'
  name: 'Angulon: physics and applications of a new quasiparticle'
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: Physical Review Letters
publication_identifier:
  eissn:
  - '10797114'
  issn:
  - '00319007'
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Femtosecond rotational dynamics of D2 molecules in superfluid helium nanodroplets
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 128
year: '2022'
...
---
_id: '11553'
abstract:
- lang: eng
  text: "In holomorphic dynamics, complex box mappings arise as first return maps
    to wellchosen domains. They are a generalization of polynomial-like mapping, where
    the domain of the return map can have infinitely many components. They turned
    out to be extremely useful in tackling diverse problems. The purpose of this paper
    is:\r\n• To illustrate some pathologies that can occur when a complex box mapping
    is not induced by a globally defined map and when its domain has infinitely many
    components, and to give conditions to avoid these issues.\r\n• To show that once
    one has a box mapping for a rational map, these conditions can be assumed to hold
    in a very natural setting. Thus, we call such complex box mappings dynamically
    natural. Having such box mappings is the first step in tackling many problems
    in one-dimensional dynamics.\r\n• Many results in holomorphic dynamics rely on
    an interplay between combinatorial and analytic techniques. In this setting, some
    of these tools are:\r\n  • the Enhanced Nest (a nest of puzzle pieces around critical
    points) from Kozlovski, Shen, van Strien (AnnMath 165:749–841, 2007), referred
    to below as KSS;\r\n  • the Covering Lemma (which controls the moduli of pullbacks
    of annuli) from Kahn and Lyubich (Ann Math 169(2):561–593, 2009);\r\n   • the
    QC-Criterion and the Spreading Principle from KSS.\r\nThe purpose of this paper
    is to make these tools more accessible so that they can be used as a ‘black box’,
    so one does not have to redo the proofs in new settings.\r\n• To give an intuitive,
    but also rather detailed, outline of the proof from KSS and Kozlovski and van
    Strien (Proc Lond Math Soc (3) 99:275–296, 2009) of the following results for
    non-renormalizable dynamically natural complex box mappings:\r\n   • puzzle pieces
    shrink to points,\r\n   • (under some assumptions) topologically conjugate non-renormalizable
    polynomials and box mappings are quasiconformally conjugate.\r\n• We prove the
    fundamental ergodic properties for dynamically natural box mappings. This leads
    to some necessary conditions for when such a box mapping supports a measurable
    invariant line field on its filled Julia set. These mappings\r\nare the analogues
    of Lattès maps in this setting.\r\n• We prove a version of Mañé’s Theorem for
    complex box mappings concerning expansion along orbits of points that avoid a
    neighborhood of the set of critical points."
acknowledgement: We would also like to thank Dzmitry Dudko and Dierk Schleicher for
  many stimulating discussions and encouragement during our work on this project,
  and Weixiao Shen, Mikhail Hlushchanka and the referee for helpful comments. We are
  grateful to Leon Staresinic who carefully read the revised version of the manuscript
  and provided many helpful suggestions.
article_processing_charge: No
article_type: original
author:
- first_name: Trevor
  full_name: Clark, Trevor
  last_name: Clark
- first_name: Kostiantyn
  full_name: Drach, Kostiantyn
  id: fe8209e2-906f-11eb-847d-950f8fc09115
  last_name: Drach
  orcid: 0000-0002-9156-8616
- first_name: Oleg
  full_name: Kozlovski, Oleg
  last_name: Kozlovski
- first_name: Sebastian Van
  full_name: Strien, Sebastian Van
  last_name: Strien
citation:
  ama: Clark T, Drach K, Kozlovski O, Strien SV. The dynamics of complex box mappings.
    <i>Arnold Mathematical Journal</i>. 2022;8(2):319-410. doi:<a href="https://doi.org/10.1007/s40598-022-00200-7">10.1007/s40598-022-00200-7</a>
  apa: Clark, T., Drach, K., Kozlovski, O., &#38; Strien, S. V. (2022). The dynamics
    of complex box mappings. <i>Arnold Mathematical Journal</i>. Springer Nature.
    <a href="https://doi.org/10.1007/s40598-022-00200-7">https://doi.org/10.1007/s40598-022-00200-7</a>
  chicago: Clark, Trevor, Kostiantyn Drach, Oleg Kozlovski, and Sebastian Van Strien.
    “The Dynamics of Complex Box Mappings.” <i>Arnold Mathematical Journal</i>. Springer
    Nature, 2022. <a href="https://doi.org/10.1007/s40598-022-00200-7">https://doi.org/10.1007/s40598-022-00200-7</a>.
  ieee: T. Clark, K. Drach, O. Kozlovski, and S. V. Strien, “The dynamics of complex
    box mappings,” <i>Arnold Mathematical Journal</i>, vol. 8, no. 2. Springer Nature,
    pp. 319–410, 2022.
  ista: Clark T, Drach K, Kozlovski O, Strien SV. 2022. The dynamics of complex box
    mappings. Arnold Mathematical Journal. 8(2), 319–410.
  mla: Clark, Trevor, et al. “The Dynamics of Complex Box Mappings.” <i>Arnold Mathematical
    Journal</i>, vol. 8, no. 2, Springer Nature, 2022, pp. 319–410, doi:<a href="https://doi.org/10.1007/s40598-022-00200-7">10.1007/s40598-022-00200-7</a>.
  short: T. Clark, K. Drach, O. Kozlovski, S.V. Strien, Arnold Mathematical Journal
    8 (2022) 319–410.
date_created: 2022-07-10T22:01:53Z
date_published: 2022-06-01T00:00:00Z
date_updated: 2023-02-16T10:02:12Z
day: '01'
ddc:
- '500'
department:
- _id: VaKa
doi: 10.1007/s40598-022-00200-7
ec_funded: 1
file:
- access_level: open_access
  checksum: 16e7c659dee9073c6c8aeb87316ef201
  content_type: application/pdf
  creator: kschuh
  date_created: 2022-07-12T10:04:55Z
  date_updated: 2022-07-12T10:04:55Z
  file_id: '11559'
  file_name: 2022_ArnoldMathematicalJournal_Clark.pdf
  file_size: 2509915
  relation: main_file
  success: 1
file_date_updated: 2022-07-12T10:04:55Z
has_accepted_license: '1'
intvolume: '         8'
issue: '2'
language:
- iso: eng
month: '06'
oa: 1
oa_version: None
page: 319-410
project:
- _id: 9B8B92DE-BA93-11EA-9121-9846C619BF3A
  call_identifier: H2020
  grant_number: '885707'
  name: Spectral rigidity and integrability for billiards and geodesic flows
publication: Arnold Mathematical Journal
publication_identifier:
  eissn:
  - 2199-6806
  issn:
  - 2199-6792
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1007/s40598-022-00209-y
  - relation: erratum
    url: https://doi.org/10.1007/s40598-022-00218-x
scopus_import: '1'
status: public
title: The dynamics of complex box mappings
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2022'
...
---
_id: '11556'
abstract:
- lang: eng
  text: "We revisit two basic Direct Simulation Monte Carlo Methods to model aggregation
    kinetics and extend them for aggregation processes with collisional fragmentation
    (shattering). We test the performance and accuracy of the extended methods and
    compare their performance with efficient deterministic finite-difference method
    applied to the same model. We validate the stochastic methods on the test problems
    and apply them to verify the existence of oscillating regimes in the aggregation-fragmentation
    kinetics recently detected in deterministic simulations. We confirm the emergence
    of steady oscillations of densities in such systems and prove the stability of
    the\r\noscillations with respect to fluctuations and noise."
acknowledgement: Zhores supercomputer of Skolkovo Institute of Science and Technology
  [68] has been used in the present research. S.A.M. was supported by Moscow Center
  for Fundamental and Applied Mathematics (the agreement with the Ministry of Education
  and Science of the Russian Federation No. 075-15-2019-1624). A.I.O. acknowledges
  RFBR project No. 20-31-90022. N.V.B. acknowledges the support of the Analytical
  Center (subsidy agreement 000000D730321P5Q0002, Grant No. 70-2021-00145 02.11.2021).
article_number: '111439'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Aleksei
  full_name: Kalinov, Aleksei
  id: 44b7120e-eb97-11eb-a6c2-e1557aa81d02
  last_name: Kalinov
  orcid: 0000-0003-2189-3904
- first_name: A.I.
  full_name: Osinskiy, A.I.
  last_name: Osinskiy
- first_name: S.A.
  full_name: Matveev, S.A.
  last_name: Matveev
- first_name: W.
  full_name: Otieno, W.
  last_name: Otieno
- first_name: N.V.
  full_name: Brilliantov, N.V.
  last_name: Brilliantov
citation:
  ama: Kalinov A, Osinskiy AI, Matveev SA, Otieno W, Brilliantov NV. Direct simulation
    Monte Carlo for new regimes in aggregation-fragmentation kinetics. <i>Journal
    of Computational Physics</i>. 2022;467. doi:<a href="https://doi.org/10.1016/j.jcp.2022.111439">10.1016/j.jcp.2022.111439</a>
  apa: Kalinov, A., Osinskiy, A. I., Matveev, S. A., Otieno, W., &#38; Brilliantov,
    N. V. (2022). Direct simulation Monte Carlo for new regimes in aggregation-fragmentation
    kinetics. <i>Journal of Computational Physics</i>. Elsevier. <a href="https://doi.org/10.1016/j.jcp.2022.111439">https://doi.org/10.1016/j.jcp.2022.111439</a>
  chicago: Kalinov, Aleksei, A.I. Osinskiy, S.A. Matveev, W. Otieno, and N.V. Brilliantov.
    “Direct Simulation Monte Carlo for New Regimes in Aggregation-Fragmentation Kinetics.”
    <i>Journal of Computational Physics</i>. Elsevier, 2022. <a href="https://doi.org/10.1016/j.jcp.2022.111439">https://doi.org/10.1016/j.jcp.2022.111439</a>.
  ieee: A. Kalinov, A. I. Osinskiy, S. A. Matveev, W. Otieno, and N. V. Brilliantov,
    “Direct simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics,”
    <i>Journal of Computational Physics</i>, vol. 467. Elsevier, 2022.
  ista: Kalinov A, Osinskiy AI, Matveev SA, Otieno W, Brilliantov NV. 2022. Direct
    simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics.
    Journal of Computational Physics. 467, 111439.
  mla: Kalinov, Aleksei, et al. “Direct Simulation Monte Carlo for New Regimes in
    Aggregation-Fragmentation Kinetics.” <i>Journal of Computational Physics</i>,
    vol. 467, 111439, Elsevier, 2022, doi:<a href="https://doi.org/10.1016/j.jcp.2022.111439">10.1016/j.jcp.2022.111439</a>.
  short: A. Kalinov, A.I. Osinskiy, S.A. Matveev, W. Otieno, N.V. Brilliantov, Journal
    of Computational Physics 467 (2022).
date_created: 2022-07-11T12:19:59Z
date_published: 2022-10-15T00:00:00Z
date_updated: 2023-08-03T11:55:06Z
day: '15'
ddc:
- '518'
department:
- _id: GradSch
- _id: ChWo
doi: 10.1016/j.jcp.2022.111439
external_id:
  arxiv:
  - '2103.09481'
  isi:
  - '000917225500013'
intvolume: '       467'
isi: 1
keyword:
- Computer Science Applications
- Physics and Astronomy (miscellaneous)
- Applied Mathematics
- Computational Mathematics
- Modeling and Simulation
- Numerical Analysis
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2103.09481
month: '10'
oa: 1
oa_version: Preprint
publication: Journal of Computational Physics
publication_identifier:
  issn:
  - 0021-9991
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Direct simulation Monte Carlo for new regimes in aggregation-fragmentation
  kinetics
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 467
year: '2022'
...
---
_id: '11587'
abstract:
- lang: eng
  text: "Background: Accurate and comprehensive annotation of transcript sequences
    is essential for transcript quantification and differential gene and transcript
    expression analysis. Single-molecule long-read sequencing technologies provide
    improved integrity of transcript structures including alternative splicing, and
    transcription start and polyadenylation sites. However, accuracy is significantly
    affected by sequencing errors, mRNA degradation, or incomplete cDNA synthesis.\r\nResults:
    We present a new and comprehensive Arabidopsis thaliana Reference Transcript Dataset
    3 (AtRTD3). AtRTD3 contains over 169,000 transcripts—twice that of the best current
    Arabidopsis transcriptome and including over 1500 novel genes. Seventy-eight percent
    of transcripts are from Iso-seq with accurately defined splice junctions and transcription
    start and end sites. We develop novel methods to determine splice junctions and
    transcription start and end sites accurately. Mismatch profiles around splice
    junctions provide a powerful feature to distinguish correct splice junctions and
    remove false splice junctions. Stratified approaches identify high-confidence
    transcription start and end sites and remove fragmentary transcripts due to degradation.
    AtRTD3 is a major improvement over existing transcriptomes as demonstrated by
    analysis of an Arabidopsis cold response RNA-seq time-series. AtRTD3 provides
    higher resolution of transcript expression profiling and identifies cold-induced
    differential transcription start and polyadenylation site usage.\r\nConclusions:
    AtRTD3 is the most comprehensive Arabidopsis transcriptome currently. It improves
    the precision of differential gene and transcript expression, differential alternative
    splicing, and transcription start/end site usage analysis from RNA-seq data. The
    novel methods for identifying accurate splice junctions and transcription start/end
    sites are widely applicable and will improve single-molecule sequencing analysis
    from any species."
acknowledgement: "This work was jointly supported by funding from the Biotechnology
  and Biological Sciences Research Council (BBSRC) BB/P009751/1 to JB; BB/R014582/1
  to RW and RZ; BB/S020160/1 to RZ; BB/S004610/1 (16 ERA-CAPS BARN) to RW; the Scottish
  Government Rural and Environment Science and Analytical Services division (RESAS)
  [to RZ, RW, and JB]; the\r\nNational Science Foundation (MCB-2014408) and the National
  Institute of Health (NIH) (GM-114297) to E.H.; S. H. was supported by funding to
  K.D. from the University of York; the Austrian Science Fund (FWF) SFB F43 to AB
  and MJ and [P26333] to MK; The French Agence Nationale de la Recherche grant ANR-16-CE12-0032
  to MC; the Japan Science and\r\nTechnology Agency (JST), the Core Research for Evolutionary
  Science and Technology (CREST; Grant Number JPMJCR13B4) to M.S.; the National Science
  Foundation (Grant No. DBI1949036 to A.b.H and A.S.N.R, and Grant No. MCB 2014542
  to E.H. and A.S.N.R.); and the DOE Office of Science, Office of Biological and Environmental
  Research (Grant\r\nNo. DE-SC0010733) to A.S.N.R and A.b.H.; the Deutsche Forschungsgemeinschaft
  (DFG) STA653/14-1 and STA653/15-1 to DS; the National Science Foundation grant (IOS-154173)
  to Q.Q.L.; the German Research Foundation (DFG) WA2167/8-1 to AW and SFB1101/C03
  to AW and TWK; the Research Grants Council (RGC) of Hong Kong (GRF 12103020) to
  LX. NSF grant IOS-1849708 and NSF EPSCoR grant 1826836 to RS; the Academia Sinica
  to S.-L. T."
article_number: '149'
article_processing_charge: No
article_type: original
author:
- first_name: Runxuan
  full_name: Zhang, Runxuan
  last_name: Zhang
- first_name: Richard
  full_name: Kuo, Richard
  last_name: Kuo
- first_name: Max
  full_name: Coulter, Max
  last_name: Coulter
- first_name: Cristiane P.G.
  full_name: Calixto, Cristiane P.G.
  last_name: Calixto
- first_name: Juan Carlos
  full_name: Entizne, Juan Carlos
  last_name: Entizne
- first_name: Wenbin
  full_name: Guo, Wenbin
  last_name: Guo
- first_name: Yamile
  full_name: Marquez, Yamile
  last_name: Marquez
- first_name: Linda
  full_name: Milne, Linda
  last_name: Milne
- first_name: Stefan
  full_name: Riegler, Stefan
  id: FF6018E0-D806-11E9-8E43-0B14E6697425
  last_name: Riegler
  orcid: 0000-0003-3413-1343
- first_name: Akihiro
  full_name: Matsui, Akihiro
  last_name: Matsui
- first_name: Maho
  full_name: Tanaka, Maho
  last_name: Tanaka
- first_name: Sarah
  full_name: Harvey, Sarah
  last_name: Harvey
- first_name: Yubang
  full_name: Gao, Yubang
  last_name: Gao
- first_name: Theresa
  full_name: Wießner-Kroh, Theresa
  last_name: Wießner-Kroh
- first_name: Alejandro
  full_name: Paniagua, Alejandro
  last_name: Paniagua
- first_name: Martin
  full_name: Crespi, Martin
  last_name: Crespi
- first_name: Katherine
  full_name: Denby, Katherine
  last_name: Denby
- first_name: Asa Ben
  full_name: Hur, Asa Ben
  last_name: Hur
- first_name: Enamul
  full_name: Huq, Enamul
  last_name: Huq
- first_name: Michael
  full_name: Jantsch, Michael
  last_name: Jantsch
- first_name: Artur
  full_name: Jarmolowski, Artur
  last_name: Jarmolowski
- first_name: Tino
  full_name: Koester, Tino
  last_name: Koester
- first_name: Sascha
  full_name: Laubinger, Sascha
  last_name: Laubinger
- first_name: Qingshun Quinn
  full_name: Li, Qingshun Quinn
  last_name: Li
- first_name: Lianfeng
  full_name: Gu, Lianfeng
  last_name: Gu
- first_name: Motoaki
  full_name: Seki, Motoaki
  last_name: Seki
- first_name: Dorothee
  full_name: Staiger, Dorothee
  last_name: Staiger
- first_name: Ramanjulu
  full_name: Sunkar, Ramanjulu
  last_name: Sunkar
- first_name: Zofia
  full_name: Szweykowska-Kulinska, Zofia
  last_name: Szweykowska-Kulinska
- first_name: Shih Long
  full_name: Tu, Shih Long
  last_name: Tu
- first_name: Andreas
  full_name: Wachter, Andreas
  last_name: Wachter
- first_name: Robbie
  full_name: Waugh, Robbie
  last_name: Waugh
- first_name: Liming
  full_name: Xiong, Liming
  last_name: Xiong
- first_name: Xiao Ning
  full_name: Zhang, Xiao Ning
  last_name: Zhang
- first_name: Ana
  full_name: Conesa, Ana
  last_name: Conesa
- first_name: Anireddy S.N.
  full_name: Reddy, Anireddy S.N.
  last_name: Reddy
- first_name: Andrea
  full_name: Barta, Andrea
  last_name: Barta
- first_name: Maria
  full_name: Kalyna, Maria
  last_name: Kalyna
- first_name: John W.S.
  full_name: Brown, John W.S.
  last_name: Brown
citation:
  ama: Zhang R, Kuo R, Coulter M, et al. A high-resolution single-molecule sequencing-based
    Arabidopsis transcriptome using novel methods of Iso-seq analysis. <i>Genome Biology</i>.
    2022;23. doi:<a href="https://doi.org/10.1186/s13059-022-02711-0">10.1186/s13059-022-02711-0</a>
  apa: Zhang, R., Kuo, R., Coulter, M., Calixto, C. P. G., Entizne, J. C., Guo, W.,
    … Brown, J. W. S. (2022). A high-resolution single-molecule sequencing-based Arabidopsis
    transcriptome using novel methods of Iso-seq analysis. <i>Genome Biology</i>.
    BioMed Central. <a href="https://doi.org/10.1186/s13059-022-02711-0">https://doi.org/10.1186/s13059-022-02711-0</a>
  chicago: Zhang, Runxuan, Richard Kuo, Max Coulter, Cristiane P.G. Calixto, Juan
    Carlos Entizne, Wenbin Guo, Yamile Marquez, et al. “A High-Resolution Single-Molecule
    Sequencing-Based Arabidopsis Transcriptome Using Novel Methods of Iso-Seq Analysis.”
    <i>Genome Biology</i>. BioMed Central, 2022. <a href="https://doi.org/10.1186/s13059-022-02711-0">https://doi.org/10.1186/s13059-022-02711-0</a>.
  ieee: R. Zhang <i>et al.</i>, “A high-resolution single-molecule sequencing-based
    Arabidopsis transcriptome using novel methods of Iso-seq analysis,” <i>Genome
    Biology</i>, vol. 23. BioMed Central, 2022.
  ista: Zhang R, Kuo R, Coulter M, Calixto CPG, Entizne JC, Guo W, Marquez Y, Milne
    L, Riegler S, Matsui A, Tanaka M, Harvey S, Gao Y, Wießner-Kroh T, Paniagua A,
    Crespi M, Denby K, Hur AB, Huq E, Jantsch M, Jarmolowski A, Koester T, Laubinger
    S, Li QQ, Gu L, Seki M, Staiger D, Sunkar R, Szweykowska-Kulinska Z, Tu SL, Wachter
    A, Waugh R, Xiong L, Zhang XN, Conesa A, Reddy ASN, Barta A, Kalyna M, Brown JWS.
    2022. A high-resolution single-molecule sequencing-based Arabidopsis transcriptome
    using novel methods of Iso-seq analysis. Genome Biology. 23, 149.
  mla: Zhang, Runxuan, et al. “A High-Resolution Single-Molecule Sequencing-Based
    Arabidopsis Transcriptome Using Novel Methods of Iso-Seq Analysis.” <i>Genome
    Biology</i>, vol. 23, 149, BioMed Central, 2022, doi:<a href="https://doi.org/10.1186/s13059-022-02711-0">10.1186/s13059-022-02711-0</a>.
  short: R. Zhang, R. Kuo, M. Coulter, C.P.G. Calixto, J.C. Entizne, W. Guo, Y. Marquez,
    L. Milne, S. Riegler, A. Matsui, M. Tanaka, S. Harvey, Y. Gao, T. Wießner-Kroh,
    A. Paniagua, M. Crespi, K. Denby, A.B. Hur, E. Huq, M. Jantsch, A. Jarmolowski,
    T. Koester, S. Laubinger, Q.Q. Li, L. Gu, M. Seki, D. Staiger, R. Sunkar, Z. Szweykowska-Kulinska,
    S.L. Tu, A. Wachter, R. Waugh, L. Xiong, X.N. Zhang, A. Conesa, A.S.N. Reddy,
    A. Barta, M. Kalyna, J.W.S. Brown, Genome Biology 23 (2022).
date_created: 2022-07-17T22:01:53Z
date_published: 2022-07-07T00:00:00Z
date_updated: 2023-08-03T12:04:18Z
day: '07'
ddc:
- '570'
department:
- _id: FyKo
doi: 10.1186/s13059-022-02711-0
external_id:
  isi:
  - '000821915500002'
file:
- access_level: open_access
  checksum: 2c30ef84151d257a6b835b4e069b70ac
  content_type: application/pdf
  creator: dernst
  date_created: 2022-07-18T08:15:24Z
  date_updated: 2022-07-18T08:15:24Z
  file_id: '11597'
  file_name: 2022_GenomeBiology_Zhang.pdf
  file_size: 3146207
  relation: main_file
  success: 1
file_date_updated: 2022-07-18T08:15:24Z
has_accepted_license: '1'
intvolume: '        23'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: Genome Biology
publication_identifier:
  eissn:
  - 1474-760X
publication_status: published
publisher: BioMed Central
quality_controlled: '1'
scopus_import: '1'
status: public
title: A high-resolution single-molecule sequencing-based Arabidopsis transcriptome
  using novel methods of Iso-seq analysis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 23
year: '2022'
...
---
_id: '11588'
abstract:
- lang: eng
  text: Visualizing cell behavior and effector function on a single cell level has
    been crucial for understanding key aspects of mammalian biology. Due to their
    small size, large number and rapid recruitment into thrombi, there is a lack of
    data on fate and behavior of individual platelets in thrombosis and hemostasis.
    Here we report the use of platelet lineage restricted multi-color reporter mouse
    strains to delineate platelet function on a single cell level. We show that genetic
    labeling allows for single platelet and megakaryocyte (MK) tracking and morphological
    analysis in vivo and in vitro, while not affecting lineage functions. Using Cre-driven
    Confetti expression, we provide insights into temporal gene expression patterns
    as well as spatial clustering of MK in the bone marrow. In the vasculature, shape
    analysis of activated platelets recruited to thrombi identifies ubiquitous filopodia
    formation with no evidence of lamellipodia formation. Single cell tracking in
    complex thrombi reveals prominent myosin-dependent motility of platelets and highlights
    thrombus formation as a highly dynamic process amenable to modification and intervention
    of the acto-myosin cytoskeleton. Platelet function assays combining flow cytrometry,
    as well as in vivo, ex vivo and in vitro imaging show unaltered platelet functions
    of multicolor reporter mice compared to wild-type controls. In conclusion, platelet
    lineage multicolor reporter mice prove useful in furthering our understanding
    of platelet and MK biology on a single cell level.
acknowledgement: "This study was supported by the Deutsche Forschungsgemeinschaft
  (DFG) SFB 914 ( to SM [B02 and Z01]), the DFG SFB 1123 (to SM [B06]), the DFG FOR
  2033 (to SM), the German\r\nCenter for Cardiovascular Research (DZHK) (Clinician
  Scientist Programme), MHA 1.4VD (to SM), Postdoc Start-up Grant, 81X3600213 (to
  FG), 81X3600222 (to LN), the FP7 program\r\n(project 260309, PRESTIGE [to SM]).
  This project has received funding from the European Research Council (ERC) under
  the European Union’s Horizon 2020 research and innovation programme (grant agreement
  No. 83344, ERC-2018-ADG “IMMUNOTHROMBOSIS” [to SM] and the Marie Skłodowska Curie
  Individual Fellowship (EU project 747687, LamelliActin [to FG]). "
article_processing_charge: No
article_type: original
author:
- first_name: Leo
  full_name: Nicolai, Leo
  last_name: Nicolai
- first_name: Rainer
  full_name: Kaiser, Rainer
  last_name: Kaiser
- first_name: Raphael
  full_name: Escaig, Raphael
  last_name: Escaig
- first_name: Marie Louise
  full_name: Hoffknecht, Marie Louise
  last_name: Hoffknecht
- first_name: Afra
  full_name: Anjum, Afra
  last_name: Anjum
- first_name: Alexander
  full_name: Leunig, Alexander
  last_name: Leunig
- first_name: Joachim
  full_name: Pircher, Joachim
  last_name: Pircher
- first_name: Andreas
  full_name: Ehrlich, Andreas
  last_name: Ehrlich
- first_name: Michael
  full_name: Lorenz, Michael
  last_name: Lorenz
- first_name: Hellen
  full_name: Ishikawa-Ankerhold, Hellen
  last_name: Ishikawa-Ankerhold
- first_name: William C.
  full_name: Aird, William C.
  last_name: Aird
- first_name: Steffen
  full_name: Massberg, Steffen
  last_name: Massberg
- first_name: Florian R
  full_name: Gärtner, Florian R
  id: 397A88EE-F248-11E8-B48F-1D18A9856A87
  last_name: Gärtner
  orcid: 0000-0001-6120-3723
citation:
  ama: Nicolai L, Kaiser R, Escaig R, et al. Single platelet and megakaryocyte morpho-dynamics
    uncovered by multicolor reporter mouse strains in vitro and in vivo. <i>Haematologica</i>.
    2022;107(7):1669-1680. doi:<a href="https://doi.org/10.3324/haematol.2021.278896">10.3324/haematol.2021.278896</a>
  apa: Nicolai, L., Kaiser, R., Escaig, R., Hoffknecht, M. L., Anjum, A., Leunig,
    A., … Gärtner, F. R. (2022). Single platelet and megakaryocyte morpho-dynamics
    uncovered by multicolor reporter mouse strains in vitro and in vivo. <i>Haematologica</i>.
    Ferrata Storti Foundation. <a href="https://doi.org/10.3324/haematol.2021.278896">https://doi.org/10.3324/haematol.2021.278896</a>
  chicago: Nicolai, Leo, Rainer Kaiser, Raphael Escaig, Marie Louise Hoffknecht, Afra
    Anjum, Alexander Leunig, Joachim Pircher, et al. “Single Platelet and Megakaryocyte
    Morpho-Dynamics Uncovered by Multicolor Reporter Mouse Strains in Vitro and in
    Vivo.” <i>Haematologica</i>. Ferrata Storti Foundation, 2022. <a href="https://doi.org/10.3324/haematol.2021.278896">https://doi.org/10.3324/haematol.2021.278896</a>.
  ieee: L. Nicolai <i>et al.</i>, “Single platelet and megakaryocyte morpho-dynamics
    uncovered by multicolor reporter mouse strains in vitro and in vivo,” <i>Haematologica</i>,
    vol. 107, no. 7. Ferrata Storti Foundation, pp. 1669–1680, 2022.
  ista: Nicolai L, Kaiser R, Escaig R, Hoffknecht ML, Anjum A, Leunig A, Pircher J,
    Ehrlich A, Lorenz M, Ishikawa-Ankerhold H, Aird WC, Massberg S, Gärtner FR. 2022.
    Single platelet and megakaryocyte morpho-dynamics uncovered by multicolor reporter
    mouse strains in vitro and in vivo. Haematologica. 107(7), 1669–1680.
  mla: Nicolai, Leo, et al. “Single Platelet and Megakaryocyte Morpho-Dynamics Uncovered
    by Multicolor Reporter Mouse Strains in Vitro and in Vivo.” <i>Haematologica</i>,
    vol. 107, no. 7, Ferrata Storti Foundation, 2022, pp. 1669–80, doi:<a href="https://doi.org/10.3324/haematol.2021.278896">10.3324/haematol.2021.278896</a>.
  short: L. Nicolai, R. Kaiser, R. Escaig, M.L. Hoffknecht, A. Anjum, A. Leunig, J.
    Pircher, A. Ehrlich, M. Lorenz, H. Ishikawa-Ankerhold, W.C. Aird, S. Massberg,
    F.R. Gärtner, Haematologica 107 (2022) 1669–1680.
date_created: 2022-07-17T22:01:54Z
date_published: 2022-07-01T00:00:00Z
date_updated: 2023-08-03T12:01:01Z
day: '01'
ddc:
- '570'
department:
- _id: MiSi
doi: 10.3324/haematol.2021.278896
ec_funded: 1
external_id:
  isi:
  - '000823746100018'
file:
- access_level: open_access
  checksum: 9b47830945f3c30428fe9cfee2dc4a8a
  content_type: application/pdf
  creator: dernst
  date_created: 2022-07-18T07:51:55Z
  date_updated: 2022-07-18T07:51:55Z
  file_id: '11595'
  file_name: 2022_Haematologica_Nicolai.pdf
  file_size: 1722094
  relation: main_file
  success: 1
file_date_updated: 2022-07-18T07:51:55Z
has_accepted_license: '1'
intvolume: '       107'
isi: 1
issue: '7'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '07'
oa: 1
oa_version: Published Version
page: 1669-1680
project:
- _id: 260AA4E2-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '747687'
  name: Mechanical Adaptation of Lamellipodial Actin Networks in Migrating Cells
publication: Haematologica
publication_identifier:
  eissn:
  - 1592-8721
  issn:
  - 0390-6078
publication_status: published
publisher: Ferrata Storti Foundation
quality_controlled: '1'
scopus_import: '1'
status: public
title: Single platelet and megakaryocyte morpho-dynamics uncovered by multicolor reporter
  mouse strains in vitro and in vivo
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 107
year: '2022'
...
---
_id: '11589'
abstract:
- lang: eng
  text: Calcium-dependent protein kinases (CPK) are key components of a wide array
    of signaling pathways, translating stress and nutrient signaling into the modulation
    of cellular processes such as ion transport and transcription. However, not much
    is known about CPKs in endomembrane trafficking. Here, we screened for CPKs that
    impact on root growth and gravitropism, by overexpressing constitutively active
    forms of CPKs under the control of an inducible promoter in Arabidopsis thaliana.
    We found that inducible overexpression of an constitutive active CPK30 (CA-CPK30)
    resulted in a loss of root gravitropism and ectopic auxin accumulation in the
    root tip. Immunolocalization revealed that CA-CPK30 roots have reduced PIN protein
    levels, PIN1 polarity defects and impaired Brefeldin A (BFA)-sensitive trafficking.
    Moreover, FM4-64 uptake was reduced, indicative of a defect in endocytosis. The
    effects on BFA-sensitive trafficking were not specific to PINs, as BFA could not
    induce aggregation of ARF1- and CHC-labeled endosomes in CA-CPK30. Interestingly,
    the interference with BFA-body formation, could be reverted by increasing the
    extracellular pH, indicating a pH-dependence of this CA-CPK30 effect. Altogether,
    our data reveal an important role for CPK30 in root growth regulation and endomembrane
    trafficking in Arabidopsis thaliana.
acknowledgement: "RW and JC predoctoral fellows that were supported by the Chinese
  Science Counsil. The IPS2 benefits from the support of the LabEx Saclay Plant Sciences-SPS
  (ANR-10-LABX-0040-SPS).\r\nWe thank Jen Sheen for establishing and generously sharing
  the CKP family clone sets, and for providing useful feedback on the manuscript."
article_number: '862398'
article_processing_charge: No
article_type: original
author:
- first_name: Ren
  full_name: Wang, Ren
  last_name: Wang
- first_name: Ellie
  full_name: Himschoot, Ellie
  last_name: Himschoot
- first_name: Jian
  full_name: Chen, Jian
  last_name: Chen
- first_name: Marie
  full_name: Boudsocq, Marie
  last_name: Boudsocq
- first_name: Danny
  full_name: Geelen, Danny
  last_name: Geelen
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Tom
  full_name: Beeckman, Tom
  last_name: Beeckman
- first_name: Steffen
  full_name: Vanneste, Steffen
  last_name: Vanneste
citation:
  ama: Wang R, Himschoot E, Chen J, et al. Constitutive active CPK30 interferes with
    root growth and endomembrane trafficking in Arabidopsis thaliana. <i>Frontiers
    in Plant Science</i>. 2022;13. doi:<a href="https://doi.org/10.3389/fpls.2022.862398">10.3389/fpls.2022.862398</a>
  apa: Wang, R., Himschoot, E., Chen, J., Boudsocq, M., Geelen, D., Friml, J., … Vanneste,
    S. (2022). Constitutive active CPK30 interferes with root growth and endomembrane
    trafficking in Arabidopsis thaliana. <i>Frontiers in Plant Science</i>. Frontiers.
    <a href="https://doi.org/10.3389/fpls.2022.862398">https://doi.org/10.3389/fpls.2022.862398</a>
  chicago: Wang, Ren, Ellie Himschoot, Jian Chen, Marie Boudsocq, Danny Geelen, Jiří
    Friml, Tom Beeckman, and Steffen Vanneste. “Constitutive Active CPK30 Interferes
    with Root Growth and Endomembrane Trafficking in Arabidopsis Thaliana.” <i>Frontiers
    in Plant Science</i>. Frontiers, 2022. <a href="https://doi.org/10.3389/fpls.2022.862398">https://doi.org/10.3389/fpls.2022.862398</a>.
  ieee: R. Wang <i>et al.</i>, “Constitutive active CPK30 interferes with root growth
    and endomembrane trafficking in Arabidopsis thaliana,” <i>Frontiers in Plant Science</i>,
    vol. 13. Frontiers, 2022.
  ista: Wang R, Himschoot E, Chen J, Boudsocq M, Geelen D, Friml J, Beeckman T, Vanneste
    S. 2022. Constitutive active CPK30 interferes with root growth and endomembrane
    trafficking in Arabidopsis thaliana. Frontiers in Plant Science. 13, 862398.
  mla: Wang, Ren, et al. “Constitutive Active CPK30 Interferes with Root Growth and
    Endomembrane Trafficking in Arabidopsis Thaliana.” <i>Frontiers in Plant Science</i>,
    vol. 13, 862398, Frontiers, 2022, doi:<a href="https://doi.org/10.3389/fpls.2022.862398">10.3389/fpls.2022.862398</a>.
  short: R. Wang, E. Himschoot, J. Chen, M. Boudsocq, D. Geelen, J. Friml, T. Beeckman,
    S. Vanneste, Frontiers in Plant Science 13 (2022).
date_created: 2022-07-17T22:01:54Z
date_published: 2022-06-16T00:00:00Z
date_updated: 2023-08-03T12:01:47Z
day: '16'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.3389/fpls.2022.862398
external_id:
  isi:
  - '000819250500001'
  pmid:
  - '35783951'
file:
- access_level: open_access
  checksum: 95313515637c0f84de591d204375d764
  content_type: application/pdf
  creator: dernst
  date_created: 2022-07-18T08:05:15Z
  date_updated: 2022-07-18T08:05:15Z
  file_id: '11596'
  file_name: 2022_FrontiersPlantScience_Wang.pdf
  file_size: 5040638
  relation: main_file
  success: 1
file_date_updated: 2022-07-18T08:05:15Z
has_accepted_license: '1'
intvolume: '        13'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
publication: Frontiers in Plant Science
publication_identifier:
  eissn:
  - 1664-462X
publication_status: published
publisher: Frontiers
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.3389/fpls.2022.1100792
scopus_import: '1'
status: public
title: Constitutive active CPK30 interferes with root growth and endomembrane trafficking
  in Arabidopsis thaliana
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13
year: '2022'
...
---
_id: '11590'
abstract:
- lang: eng
  text: 'We investigate the ground-state properties of weakly repulsive one-dimensional
    bosons in the presence of an attractive zero-range impurity potential. First,
    we derive mean-field solutions to the problem on a finite ring for the two asymptotic
    cases: (i) all bosons are bound to the impurity and (ii) all bosons are in a scattering
    state. Moreover, we derive the critical line that separates these regimes in the
    parameter space. In the thermodynamic limit, this critical line determines the
    maximum number of bosons that can be bound by the impurity potential, forming
    an artificial atom. Second, we validate the mean-field results using the flow
    equation approach and the multi-layer multi-configuration time-dependent Hartree
    method for atomic mixtures. While beyond-mean-field effects destroy long-range
    order in the Bose gas, the critical boson number is unaffected. Our findings are
    important for understanding such artificial atoms in low-density Bose gases with
    static and mobile impurities.'
acknowledgement: This work has received funding from the DFG Project No. 413495248
  [VO 2437/1-1] (FB, H-WH, AGV) and European Union's Horizon 2020 research and innovation
  programme under the Marie Skĺodowska-Curie Grant Agreement No. 754411 (AGV). ML
  acknowledges support by the European Research Council (ERC) Starting Grant No. 801770
  (ANGULON). SIM acknowledges support from the NSF through a grant for ITAMP at Harvard
  University.
article_number: '063036'
article_processing_charge: No
article_type: original
author:
- first_name: Fabian
  full_name: Brauneis, Fabian
  last_name: Brauneis
- first_name: Timothy G.
  full_name: Backert, Timothy G.
  last_name: Backert
- first_name: Simeon I.
  full_name: Mistakidis, Simeon I.
  last_name: Mistakidis
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Hans Werner
  full_name: Hammer, Hans Werner
  last_name: Hammer
- first_name: Artem
  full_name: Volosniev, Artem
  id: 37D278BC-F248-11E8-B48F-1D18A9856A87
  last_name: Volosniev
  orcid: 0000-0003-0393-5525
citation:
  ama: Brauneis F, Backert TG, Mistakidis SI, Lemeshko M, Hammer HW, Volosniev A.
    Artificial atoms from cold bosons in one dimension. <i>New Journal of Physics</i>.
    2022;24(6). doi:<a href="https://doi.org/10.1088/1367-2630/ac78d8">10.1088/1367-2630/ac78d8</a>
  apa: Brauneis, F., Backert, T. G., Mistakidis, S. I., Lemeshko, M., Hammer, H. W.,
    &#38; Volosniev, A. (2022). Artificial atoms from cold bosons in one dimension.
    <i>New Journal of Physics</i>. IOP Publishing. <a href="https://doi.org/10.1088/1367-2630/ac78d8">https://doi.org/10.1088/1367-2630/ac78d8</a>
  chicago: Brauneis, Fabian, Timothy G. Backert, Simeon I. Mistakidis, Mikhail Lemeshko,
    Hans Werner Hammer, and Artem Volosniev. “Artificial Atoms from Cold Bosons in
    One Dimension.” <i>New Journal of Physics</i>. IOP Publishing, 2022. <a href="https://doi.org/10.1088/1367-2630/ac78d8">https://doi.org/10.1088/1367-2630/ac78d8</a>.
  ieee: F. Brauneis, T. G. Backert, S. I. Mistakidis, M. Lemeshko, H. W. Hammer, and
    A. Volosniev, “Artificial atoms from cold bosons in one dimension,” <i>New Journal
    of Physics</i>, vol. 24, no. 6. IOP Publishing, 2022.
  ista: Brauneis F, Backert TG, Mistakidis SI, Lemeshko M, Hammer HW, Volosniev A.
    2022. Artificial atoms from cold bosons in one dimension. New Journal of Physics.
    24(6), 063036.
  mla: Brauneis, Fabian, et al. “Artificial Atoms from Cold Bosons in One Dimension.”
    <i>New Journal of Physics</i>, vol. 24, no. 6, 063036, IOP Publishing, 2022, doi:<a
    href="https://doi.org/10.1088/1367-2630/ac78d8">10.1088/1367-2630/ac78d8</a>.
  short: F. Brauneis, T.G. Backert, S.I. Mistakidis, M. Lemeshko, H.W. Hammer, A.
    Volosniev, New Journal of Physics 24 (2022).
date_created: 2022-07-17T22:01:55Z
date_published: 2022-06-01T00:00:00Z
date_updated: 2023-08-03T11:57:41Z
day: '01'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1088/1367-2630/ac78d8
ec_funded: 1
external_id:
  isi:
  - '000818530000001'
file:
- access_level: open_access
  checksum: dc67b60f2e50e9ef2bd820ca0d7333d2
  content_type: application/pdf
  creator: dernst
  date_created: 2022-07-18T06:33:13Z
  date_updated: 2022-07-18T06:33:13Z
  file_id: '11594'
  file_name: 2022_NewJournalPhysics_Brauneis.pdf
  file_size: 3415721
  relation: main_file
  success: 1
file_date_updated: 2022-07-18T06:33:13Z
has_accepted_license: '1'
intvolume: '        24'
isi: 1
issue: '6'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '801770'
  name: 'Angulon: physics and applications of a new quasiparticle'
publication: New Journal of Physics
publication_identifier:
  issn:
  - 1367-2630
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Artificial atoms from cold bosons in one dimension
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 24
year: '2022'
...
---
_id: '11591'
abstract:
- lang: eng
  text: We investigate the deterministic generation and distribution of entanglement
    in large quantum networks by driving distant qubits with the output fields of
    a nondegenerate parametric amplifier. In this setting, the amplifier produces
    a continuous Gaussian two-mode squeezed state, which acts as a quantum-correlated
    reservoir for the qubits and relaxes them into a highly entangled steady state.
    Here we are interested in the maximal amount of entanglement and the optimal entanglement
    generation rates that can be achieved with this scheme under realistic conditions
    taking, in particular, the finite amplifier bandwidth, waveguide losses, and propagation
    delays into account. By combining exact numerical simulations of the full network
    with approximate analytic results, we predict the optimal working point for the
    amplifier and the corresponding qubit-qubit entanglement under various conditions.
    Our findings show that this passive conversion of Gaussian into discrete-variable
    entanglement offers a robust and experimentally very attractive approach for operating
    large optical, microwave, or hybrid quantum networks, for which efficient parametric
    amplifiers are currently developed.
acknowledgement: We thank T. Mavrogordatos and D. Zhu for initial contribution on
  the presented topic and K. Fedorov for stimulating discussions on entangled microwave
  beams. This work was supported by the Austrian Science Fund (FWF) through Grant
  No. P32299 (PHONED) and the European Union’s Horizon 2020 research and innovation
  programme under Grant Agreement No. 899354 (SuperQuLAN). Most of the computational
  results presented were obtained using the CLIP cluster [65].
article_number: '062454'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: J.
  full_name: Agustí, J.
  last_name: Agustí
- first_name: Y.
  full_name: Minoguchi, Y.
  last_name: Minoguchi
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
- first_name: P.
  full_name: Rabl, P.
  last_name: Rabl
citation:
  ama: Agustí J, Minoguchi Y, Fink JM, Rabl P. Long-distance distribution of qubit-qubit
    entanglement using Gaussian-correlated photonic beams. <i>Physical Review A</i>.
    2022;105(6). doi:<a href="https://doi.org/10.1103/PhysRevA.105.062454">10.1103/PhysRevA.105.062454</a>
  apa: Agustí, J., Minoguchi, Y., Fink, J. M., &#38; Rabl, P. (2022). Long-distance
    distribution of qubit-qubit entanglement using Gaussian-correlated photonic beams.
    <i>Physical Review A</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevA.105.062454">https://doi.org/10.1103/PhysRevA.105.062454</a>
  chicago: Agustí, J., Y. Minoguchi, Johannes M Fink, and P. Rabl. “Long-Distance
    Distribution of Qubit-Qubit Entanglement Using Gaussian-Correlated Photonic Beams.”
    <i>Physical Review A</i>. American Physical Society, 2022. <a href="https://doi.org/10.1103/PhysRevA.105.062454">https://doi.org/10.1103/PhysRevA.105.062454</a>.
  ieee: J. Agustí, Y. Minoguchi, J. M. Fink, and P. Rabl, “Long-distance distribution
    of qubit-qubit entanglement using Gaussian-correlated photonic beams,” <i>Physical
    Review A</i>, vol. 105, no. 6. American Physical Society, 2022.
  ista: Agustí J, Minoguchi Y, Fink JM, Rabl P. 2022. Long-distance distribution of
    qubit-qubit entanglement using Gaussian-correlated photonic beams. Physical Review
    A. 105(6), 062454.
  mla: Agustí, J., et al. “Long-Distance Distribution of Qubit-Qubit Entanglement
    Using Gaussian-Correlated Photonic Beams.” <i>Physical Review A</i>, vol. 105,
    no. 6, 062454, American Physical Society, 2022, doi:<a href="https://doi.org/10.1103/PhysRevA.105.062454">10.1103/PhysRevA.105.062454</a>.
  short: J. Agustí, Y. Minoguchi, J.M. Fink, P. Rabl, Physical Review A 105 (2022).
date_created: 2022-07-17T22:01:55Z
date_published: 2022-06-29T00:00:00Z
date_updated: 2023-08-03T11:58:16Z
day: '29'
department:
- _id: JoFi
doi: 10.1103/PhysRevA.105.062454
ec_funded: 1
external_id:
  arxiv:
  - '2204.02993'
  isi:
  - '000824330200003'
intvolume: '       105'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2204.02993'
month: '06'
oa: 1
oa_version: Preprint
project:
- _id: 9B868D20-BA93-11EA-9121-9846C619BF3A
  call_identifier: H2020
  grant_number: '899354'
  name: Quantum Local Area Networks with Superconducting Qubits
publication: Physical Review A
publication_identifier:
  eissn:
  - 2469-9934
  issn:
  - 2469-9926
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Long-distance distribution of qubit-qubit entanglement using Gaussian-correlated
  photonic beams
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 105
year: '2022'
...
---
_id: '11592'
abstract:
- lang: eng
  text: 'We compare recent experimental results [Science 375, 528 (2022)] of the superfluid
    unitary Fermi gas near the critical temperature with a thermodynamic model based
    on the elementary excitations of the system. We find good agreement between experimental
    data and our theory for several quantities such as first sound, second sound,
    and superfluid fraction. We also show that mode mixing between first and second
    sound occurs. Finally, we characterize the response amplitude to a density perturbation:
    Close to the critical temperature both first and second sound can be excited through
    a density perturbation, whereas at lower temperatures only the first sound mode
    exhibits a significant response.'
acknowledgement: The authors gratefully acknowledge stimulating discussions with T.
  Enss, and thank an anonymous referee for suggestions and remarks that allowed us
  to improve the original manuscript. This work is supported by the Deutsche Forschungsgemeinschaft
  (DFG, German Research Foundation) under Germany’s Excellence Strategy EXC2181/1-390900948
  (the Heidelberg STRUCTURES Excellence Cluster).
article_number: '063329'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Giacomo
  full_name: Bighin, Giacomo
  id: 4CA96FD4-F248-11E8-B48F-1D18A9856A87
  last_name: Bighin
  orcid: 0000-0001-8823-9777
- first_name: Alberto
  full_name: Cappellaro, Alberto
  id: 9d13b3cb-30a2-11eb-80dc-f772505e8660
  last_name: Cappellaro
  orcid: 0000-0001-6110-2359
- first_name: L.
  full_name: Salasnich, L.
  last_name: Salasnich
citation:
  ama: 'Bighin G, Cappellaro A, Salasnich L. Unitary Fermi superfluid near the critical
    temperature: Thermodynamics and sound modes from elementary excitations. <i>Physical
    Review A</i>. 2022;105(6). doi:<a href="https://doi.org/10.1103/PhysRevA.105.063329">10.1103/PhysRevA.105.063329</a>'
  apa: 'Bighin, G., Cappellaro, A., &#38; Salasnich, L. (2022). Unitary Fermi superfluid
    near the critical temperature: Thermodynamics and sound modes from elementary
    excitations. <i>Physical Review A</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevA.105.063329">https://doi.org/10.1103/PhysRevA.105.063329</a>'
  chicago: 'Bighin, Giacomo, Alberto Cappellaro, and L. Salasnich. “Unitary Fermi
    Superfluid near the Critical Temperature: Thermodynamics and Sound Modes from
    Elementary Excitations.” <i>Physical Review A</i>. American Physical Society,
    2022. <a href="https://doi.org/10.1103/PhysRevA.105.063329">https://doi.org/10.1103/PhysRevA.105.063329</a>.'
  ieee: 'G. Bighin, A. Cappellaro, and L. Salasnich, “Unitary Fermi superfluid near
    the critical temperature: Thermodynamics and sound modes from elementary excitations,”
    <i>Physical Review A</i>, vol. 105, no. 6. American Physical Society, 2022.'
  ista: 'Bighin G, Cappellaro A, Salasnich L. 2022. Unitary Fermi superfluid near
    the critical temperature: Thermodynamics and sound modes from elementary excitations.
    Physical Review A. 105(6), 063329.'
  mla: 'Bighin, Giacomo, et al. “Unitary Fermi Superfluid near the Critical Temperature:
    Thermodynamics and Sound Modes from Elementary Excitations.” <i>Physical Review
    A</i>, vol. 105, no. 6, 063329, American Physical Society, 2022, doi:<a href="https://doi.org/10.1103/PhysRevA.105.063329">10.1103/PhysRevA.105.063329</a>.'
  short: G. Bighin, A. Cappellaro, L. Salasnich, Physical Review A 105 (2022).
date_created: 2022-07-17T22:01:55Z
date_published: 2022-06-30T00:00:00Z
date_updated: 2023-08-03T12:00:11Z
day: '30'
department:
- _id: MiLe
doi: 10.1103/PhysRevA.105.063329
external_id:
  arxiv:
  - '2206.03924'
  isi:
  - '000829758500010'
intvolume: '       105'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2206.03924'
month: '06'
oa: 1
oa_version: Preprint
publication: Physical Review A
publication_identifier:
  eissn:
  - 2469-9934
  issn:
  - 2469-9926
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Unitary Fermi superfluid near the critical temperature: Thermodynamics and
  sound modes from elementary excitations'
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 105
year: '2022'
...
---
_id: '11593'
abstract:
- lang: eng
  text: 'A drawing of a graph on a surface is independently even if every pair of
    nonadjacent edges in the drawing crosses an even number of times. The Z2 -genus
    of a graph G is the minimum g such that G has an independently even drawing on
    the orientable surface of genus g. An unpublished result by Robertson and Seymour
    implies that for every t, every graph of sufficiently large genus contains as
    a minor a projective t×t grid or one of the following so-called t -Kuratowski
    graphs: K3,t, or t copies of K5 or K3,3 sharing at most two common vertices. We
    show that the Z2-genus of graphs in these families is unbounded in t; in fact,
    equal to their genus. Together, this implies that the genus of a graph is bounded
    from above by a function of its Z2-genus, solving a problem posed by Schaefer
    and Štefankovič, and giving an approximate version of the Hanani–Tutte theorem
    on orientable surfaces. We also obtain an analogous result for Euler genus and
    Euler Z2-genus of graphs.'
acknowledgement: "We thank Zdeněk Dvořák, Xavier Goaoc, and Pavel Paták for helpful
  discussions. We also thank Bojan Mohar, Paul Seymour, Gelasio Salazar, Jim Geelen,
  and John Maharry for information about their unpublished results related to Conjecture
  3.1. Finally we thank the reviewers for corrections and suggestions for improving
  the presentation.\r\nSupported by Austrian Science Fund (FWF): M2281-N35. Supported
  by project 19-04113Y of the Czech Science Foundation (GAČR), by the Czech-French
  collaboration project EMBEDS II (CZ: 7AMB17FR029, FR: 38087RM), and by Charles University
  project UNCE/SCI/004."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Radoslav
  full_name: Fulek, Radoslav
  id: 39F3FFE4-F248-11E8-B48F-1D18A9856A87
  last_name: Fulek
  orcid: 0000-0001-8485-1774
- first_name: Jan
  full_name: Kynčl, Jan
  last_name: Kynčl
citation:
  ama: Fulek R, Kynčl J. The Z2-Genus of Kuratowski minors. <i>Discrete and Computational
    Geometry</i>. 2022;68:425-447. doi:<a href="https://doi.org/10.1007/s00454-022-00412-w">10.1007/s00454-022-00412-w</a>
  apa: Fulek, R., &#38; Kynčl, J. (2022). The Z2-Genus of Kuratowski minors. <i>Discrete
    and Computational Geometry</i>. Springer Nature. <a href="https://doi.org/10.1007/s00454-022-00412-w">https://doi.org/10.1007/s00454-022-00412-w</a>
  chicago: Fulek, Radoslav, and Jan Kynčl. “The Z2-Genus of Kuratowski Minors.” <i>Discrete
    and Computational Geometry</i>. Springer Nature, 2022. <a href="https://doi.org/10.1007/s00454-022-00412-w">https://doi.org/10.1007/s00454-022-00412-w</a>.
  ieee: R. Fulek and J. Kynčl, “The Z2-Genus of Kuratowski minors,” <i>Discrete and
    Computational Geometry</i>, vol. 68. Springer Nature, pp. 425–447, 2022.
  ista: Fulek R, Kynčl J. 2022. The Z2-Genus of Kuratowski minors. Discrete and Computational
    Geometry. 68, 425–447.
  mla: Fulek, Radoslav, and Jan Kynčl. “The Z2-Genus of Kuratowski Minors.” <i>Discrete
    and Computational Geometry</i>, vol. 68, Springer Nature, 2022, pp. 425–47, doi:<a
    href="https://doi.org/10.1007/s00454-022-00412-w">10.1007/s00454-022-00412-w</a>.
  short: R. Fulek, J. Kynčl, Discrete and Computational Geometry 68 (2022) 425–447.
date_created: 2022-07-17T22:01:56Z
date_published: 2022-09-01T00:00:00Z
date_updated: 2023-08-14T12:43:52Z
day: '01'
department:
- _id: UlWa
doi: 10.1007/s00454-022-00412-w
external_id:
  arxiv:
  - '1803.05085'
  isi:
  - '000825014500001'
intvolume: '        68'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1803.05085
month: '09'
oa: 1
oa_version: Preprint
page: 425-447
project:
- _id: 261FA626-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: M02281
  name: Eliminating intersections in drawings of graphs
publication: Discrete and Computational Geometry
publication_identifier:
  eissn:
  - 1432-0444
  issn:
  - 0179-5376
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '186'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: The Z2-Genus of Kuratowski minors
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 68
year: '2022'
...
---
_id: '11600'
abstract:
- lang: eng
  text: The Sun’s surface hosts varying magnetic activities and rotation rates (from
    equator to pole), and unique solar weather. Now, a combination of ground and space
    observations has unveiled a previously undetected magnetized plasma current.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Lisa Annabelle
  full_name: Bugnet, Lisa Annabelle
  id: d9edb345-f866-11ec-9b37-d119b5234501
  last_name: Bugnet
  orcid: 0000-0003-0142-4000
citation:
  ama: Bugnet LA. Hidden currents at the Sun’s surface. <i>Nature Astronomy</i>. 2022;6:631-632.
    doi:<a href="https://doi.org/10.1038/s41550-022-01683-2">10.1038/s41550-022-01683-2</a>
  apa: Bugnet, L. A. (2022). Hidden currents at the Sun’s surface. <i>Nature Astronomy</i>.
    Springer Nature. <a href="https://doi.org/10.1038/s41550-022-01683-2">https://doi.org/10.1038/s41550-022-01683-2</a>
  chicago: Bugnet, Lisa Annabelle. “Hidden Currents at the Sun’s Surface.” <i>Nature
    Astronomy</i>. Springer Nature, 2022. <a href="https://doi.org/10.1038/s41550-022-01683-2">https://doi.org/10.1038/s41550-022-01683-2</a>.
  ieee: L. A. Bugnet, “Hidden currents at the Sun’s surface,” <i>Nature Astronomy</i>,
    vol. 6. Springer Nature, pp. 631–632, 2022.
  ista: Bugnet LA. 2022. Hidden currents at the Sun’s surface. Nature Astronomy. 6,
    631–632.
  mla: Bugnet, Lisa Annabelle. “Hidden Currents at the Sun’s Surface.” <i>Nature Astronomy</i>,
    vol. 6, Springer Nature, 2022, pp. 631–32, doi:<a href="https://doi.org/10.1038/s41550-022-01683-2">10.1038/s41550-022-01683-2</a>.
  short: L.A. Bugnet, Nature Astronomy 6 (2022) 631–632.
date_created: 2022-07-18T09:34:37Z
date_published: 2022-05-18T00:00:00Z
date_updated: 2022-08-19T09:52:21Z
day: '18'
doi: 10.1038/s41550-022-01683-2
extern: '1'
intvolume: '         6'
keyword:
- Astronomy and Astrophysics
language:
- iso: eng
month: '05'
oa_version: None
page: 631-632
publication: Nature Astronomy
publication_identifier:
  eissn:
  - 2397-3366
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Hidden currents at the Sun’s surface
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2022'
...
---
_id: '11601'
abstract:
- lang: eng
  text: We present the third and final data release of the K2 Galactic Archaeology
    Program (K2 GAP) for Campaigns C1–C8 and C10–C18. We provide asteroseismic radius
    and mass coefficients, κR and κM, for ∼19,000 red giant stars, which translate
    directly to radius and mass given a temperature. As such, K2 GAP DR3 represents
    the largest asteroseismic sample in the literature to date. K2 GAP DR3 stellar
    parameters are calibrated to be on an absolute parallactic scale based on Gaia
    DR2, with red giant branch and red clump evolutionary state classifications provided
    via a machine-learning approach. Combining these stellar parameters with GALAH
    DR3 spectroscopy, we determine asteroseismic ages with precisions of ∼20%–30%
    and compare age-abundance relations to Galactic chemical evolution models among
    both low- and high-α populations for α, light, iron-peak, and neutron-capture
    elements. We confirm recent indications in the literature of both increased Ba
    production at late Galactic times as well as significant contributions to r-process
    enrichment from prompt sources associated with, e.g., core-collapse supernovae.
    With an eye toward other Galactic archeology applications, we characterize K2
    GAP DR3 uncertainties and completeness using injection tests, suggesting that
    K2 GAP DR3 is largely unbiased in mass/age, with uncertainties of 2.9% (stat.)
    ± 0.1% (syst.) and 6.7% (stat.) ± 0.3% (syst.) in κR and κM for red giant branch
    stars and 4.7% (stat.) ± 0.3% (syst.) and 11% (stat.) ± 0.9% (syst.) for red clump
    stars. We also identify percent-level asteroseismic systematics, which are likely
    related to the time baseline of the underlying data, and which therefore should
    be considered in TESS asteroseismic analysis.
acknowledgement: "We would like to thank the anonymous referee whose comments significantly
  improved the manuscript. J.C.Z. is supported by an NSF Astronomy and Astrophysics
  Postdoctoral Fellowship under award AST-2001869. J.C.Z. and M.H.P. acknowledge support
  from NASA grants 80NSSC18K0391 and NNX17AJ40G. Y.E. and C.J. acknowledge the support
  of the UK Science and Technology Facilities Council (STFC). S.M. acknowledges support
  from the Spanish Ministry of Science and Innovation with the Ramon y Cajal fellowship
  number RYC-2015-17697 and the grant number PID2019-107187GB-I00. R.A.G. acknowledges
  funding received from the PLATO CNES grant. C.K. acknowledges funding from the UK
  Science and Technology Facilities Council (STFC) through grants ST/M000958/1, ST/R000905/1,
  and ST/V000632/1.\r\n\r\nFunding for the Stellar Astrophysics Centre (SAC) is provided
  by the Danish National Research Foundation (grant agreement No. DNRF106).\r\n\r\nThe
  K2 Galactic Archaeology Program is supported by the National Aeronautics and Space
  Administration under grant NNX16AJ17G issued through the K2 Guest Observer Program.
  This publication makes use of data products from the Two Micron All Sky Survey,
  which is a joint project of the University of Massachusetts and the Infrared Processing
  and Analysis Center/California Institute of Technology, funded by the National Aeronautics
  and Space Administration and the National Science Foundation.\r\n\r\nThis paper
  includes data collected by the Kepler mission. Funding for the Kepler mission is
  provided by the NASA Science Mission directorate.\r\n\r\nParts of this research
  were supported by the Australian Research Council Centre of Excellence for All Sky
  Astrophysics in 3 Dimensions (ASTRO 3D), through project number CE170100013.\r\n\r\nThis
  research was partially conducted during the Exostar19 program at the Kavli Institute
  for Theoretical Physics at UC Santa Barbara, which was supported in part by the
  National Science Foundation under grant No. NSF PHY-1748958.\r\n\r\nBased in part
  on data obtained at Siding Spring Observatory via GALAH. We acknowledge the traditional
  owners of the land on which the AAT stands, the Gamilaraay people, and pay our respects
  to elders past and present.\r\n\r\nThis work has made use of data from the European
  Space Agency (ESA) mission Gaia (https://www.cosmos.esa.int/gaia), processed by
  the Gaia Data Processing and Analysis Consortium (DPAC, https://www.cosmos.esa.int/web/gaia/dpac/consortium).
  Funding for DPAC has been provided by national institutions, in particular the institutions
  participating in the Gaia Multilateral Agreement.\r\n\r\nFunding for the Sloan Digital
  Sky Survey IV has been provided by the Alfred P. Sloan Foundation, the U.S. Department
  of Energy Office of Science, and the Participating Institutions. SDSS-IV acknowledges
  support and resources from the Center for High-Performance Computing at the University
  of Utah (www.sdss.org).\r\n\r\nSoftware: asfgrid (Sharma & Stello 2016), corner
  (Foreman-Mackey 2016), emcee (Foreman-Mackey et al. 2013), NumPy (Walt 2011), pandas
  (McKinney 2010), Matplotlib (Hunter 2007), IPython (Pérez & Granger 2007), SciPy
  (Virtanen et al.2020)."
article_number: '191'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Joel C.
  full_name: Zinn, Joel C.
  last_name: Zinn
- first_name: Dennis
  full_name: Stello, Dennis
  last_name: Stello
- first_name: Yvonne
  full_name: Elsworth, Yvonne
  last_name: Elsworth
- first_name: Rafael A.
  full_name: García, Rafael A.
  last_name: García
- first_name: Thomas
  full_name: Kallinger, Thomas
  last_name: Kallinger
- first_name: Savita
  full_name: Mathur, Savita
  last_name: Mathur
- first_name: Benoît
  full_name: Mosser, Benoît
  last_name: Mosser
- first_name: Marc
  full_name: Hon, Marc
  last_name: Hon
- first_name: Lisa Annabelle
  full_name: Bugnet, Lisa Annabelle
  id: d9edb345-f866-11ec-9b37-d119b5234501
  last_name: Bugnet
  orcid: 0000-0003-0142-4000
- first_name: Caitlin
  full_name: Jones, Caitlin
  last_name: Jones
- first_name: Claudia
  full_name: Reyes, Claudia
  last_name: Reyes
- first_name: Sanjib
  full_name: Sharma, Sanjib
  last_name: Sharma
- first_name: Ralph
  full_name: Schönrich, Ralph
  last_name: Schönrich
- first_name: Jack T.
  full_name: Warfield, Jack T.
  last_name: Warfield
- first_name: Rodrigo
  full_name: Luger, Rodrigo
  last_name: Luger
- first_name: Andrew
  full_name: Vanderburg, Andrew
  last_name: Vanderburg
- first_name: Chiaki
  full_name: Kobayashi, Chiaki
  last_name: Kobayashi
- first_name: Marc H.
  full_name: Pinsonneault, Marc H.
  last_name: Pinsonneault
- first_name: Jennifer A.
  full_name: Johnson, Jennifer A.
  last_name: Johnson
- first_name: Daniel
  full_name: Huber, Daniel
  last_name: Huber
- first_name: Sven
  full_name: Buder, Sven
  last_name: Buder
- first_name: Meridith
  full_name: Joyce, Meridith
  last_name: Joyce
- first_name: Joss
  full_name: Bland-Hawthorn, Joss
  last_name: Bland-Hawthorn
- first_name: Luca
  full_name: Casagrande, Luca
  last_name: Casagrande
- first_name: Geraint F.
  full_name: Lewis, Geraint F.
  last_name: Lewis
- first_name: Andrea
  full_name: Miglio, Andrea
  last_name: Miglio
- first_name: Thomas
  full_name: Nordlander, Thomas
  last_name: Nordlander
- first_name: Guy R.
  full_name: Davies, Guy R.
  last_name: Davies
- first_name: Gayandhi De
  full_name: Silva, Gayandhi De
  last_name: Silva
- first_name: William J.
  full_name: Chaplin, William J.
  last_name: Chaplin
- first_name: Victor
  full_name: Silva Aguirre, Victor
  last_name: Silva Aguirre
citation:
  ama: 'Zinn JC, Stello D, Elsworth Y, et al. The K2 Galactic Archaeology Program
    data release 3: Age-abundance patterns in C1–C8 and C10–C18. <i>The Astrophysical
    Journal</i>. 2022;926(2). doi:<a href="https://doi.org/10.3847/1538-4357/ac2c83">10.3847/1538-4357/ac2c83</a>'
  apa: 'Zinn, J. C., Stello, D., Elsworth, Y., García, R. A., Kallinger, T., Mathur,
    S., … Silva Aguirre, V. (2022). The K2 Galactic Archaeology Program data release
    3: Age-abundance patterns in C1–C8 and C10–C18. <i>The Astrophysical Journal</i>.
    IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ac2c83">https://doi.org/10.3847/1538-4357/ac2c83</a>'
  chicago: 'Zinn, Joel C., Dennis Stello, Yvonne Elsworth, Rafael A. García, Thomas
    Kallinger, Savita Mathur, Benoît Mosser, et al. “The K2 Galactic Archaeology Program
    Data Release 3: Age-Abundance Patterns in C1–C8 and C10–C18.” <i>The Astrophysical
    Journal</i>. IOP Publishing, 2022. <a href="https://doi.org/10.3847/1538-4357/ac2c83">https://doi.org/10.3847/1538-4357/ac2c83</a>.'
  ieee: 'J. C. Zinn <i>et al.</i>, “The K2 Galactic Archaeology Program data release
    3: Age-abundance patterns in C1–C8 and C10–C18,” <i>The Astrophysical Journal</i>,
    vol. 926, no. 2. IOP Publishing, 2022.'
  ista: 'Zinn JC, Stello D, Elsworth Y, García RA, Kallinger T, Mathur S, Mosser B,
    Hon M, Bugnet LA, Jones C, Reyes C, Sharma S, Schönrich R, Warfield JT, Luger
    R, Vanderburg A, Kobayashi C, Pinsonneault MH, Johnson JA, Huber D, Buder S, Joyce
    M, Bland-Hawthorn J, Casagrande L, Lewis GF, Miglio A, Nordlander T, Davies GR,
    Silva GD, Chaplin WJ, Silva Aguirre V. 2022. The K2 Galactic Archaeology Program
    data release 3: Age-abundance patterns in C1–C8 and C10–C18. The Astrophysical
    Journal. 926(2), 191.'
  mla: 'Zinn, Joel C., et al. “The K2 Galactic Archaeology Program Data Release 3:
    Age-Abundance Patterns in C1–C8 and C10–C18.” <i>The Astrophysical Journal</i>,
    vol. 926, no. 2, 191, IOP Publishing, 2022, doi:<a href="https://doi.org/10.3847/1538-4357/ac2c83">10.3847/1538-4357/ac2c83</a>.'
  short: J.C. Zinn, D. Stello, Y. Elsworth, R.A. García, T. Kallinger, S. Mathur,
    B. Mosser, M. Hon, L.A. Bugnet, C. Jones, C. Reyes, S. Sharma, R. Schönrich, J.T.
    Warfield, R. Luger, A. Vanderburg, C. Kobayashi, M.H. Pinsonneault, J.A. Johnson,
    D. Huber, S. Buder, M. Joyce, J. Bland-Hawthorn, L. Casagrande, G.F. Lewis, A.
    Miglio, T. Nordlander, G.R. Davies, G.D. Silva, W.J. Chaplin, V. Silva Aguirre,
    The Astrophysical Journal 926 (2022).
date_created: 2022-07-18T10:57:30Z
date_published: 2022-02-24T00:00:00Z
date_updated: 2022-08-19T09:52:08Z
day: '24'
doi: 10.3847/1538-4357/ac2c83
extern: '1'
external_id:
  arxiv:
  - '2108.05455'
intvolume: '       926'
issue: '2'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2108.05455
month: '02'
oa: 1
oa_version: Preprint
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The K2 Galactic Archaeology Program data release 3: Age-abundance patterns
  in C1–C8 and C10–C18'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 926
year: '2022'
...
