[{"publication":"Journal of the American Chemical Society","oa_version":"Submitted Version","month":"06","language":[{"iso":"eng"}],"keyword":["Colloid and Surface Chemistry","Biochemistry","General Chemistry","Catalysis"],"date_published":"2019-06-14T00:00:00Z","type":"journal_article","publication_identifier":{"issn":["0002-7863","1520-5126"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","pmid":1,"_id":"8408","author":[{"full_name":"Gauto, Diego F.","first_name":"Diego F.","last_name":"Gauto"},{"first_name":"Pavel","last_name":"Macek","full_name":"Macek, Pavel"},{"first_name":"Alessandro","last_name":"Barducci","full_name":"Barducci, Alessandro"},{"last_name":"Fraga","first_name":"Hugo","full_name":"Fraga, Hugo"},{"first_name":"Audrey","last_name":"Hessel","full_name":"Hessel, Audrey"},{"full_name":"Terauchi, Tsutomu","last_name":"Terauchi","first_name":"Tsutomu"},{"last_name":"Gajan","first_name":"David","full_name":"Gajan, David"},{"last_name":"Miyanoiri","first_name":"Yohei","full_name":"Miyanoiri, Yohei"},{"full_name":"Boisbouvier, Jerome","first_name":"Jerome","last_name":"Boisbouvier"},{"first_name":"Roman","last_name":"Lichtenecker","full_name":"Lichtenecker, Roman"},{"full_name":"Kainosho, Masatsune","first_name":"Masatsune","last_name":"Kainosho"},{"first_name":"Paul","last_name":"Schanda","orcid":"0000-0002-9350-7606","full_name":"Schanda, Paul","id":"7B541462-FAF6-11E9-A490-E8DFE5697425"}],"issue":"28","publication_status":"published","article_processing_charge":"No","date_created":"2020-09-17T10:29:00Z","title":"Aromatic ring dynamics, thermal activation, and transient conformations of a 468 kDa enzyme by specific 1H–13C labeling and fast magic-angle spinning NMR","intvolume":"       141","page":"11183-11195","quality_controlled":"1","publisher":"American Chemical Society","article_type":"original","date_updated":"2021-01-12T08:19:04Z","citation":{"ama":"Gauto DF, Macek P, Barducci A, et al. Aromatic ring dynamics, thermal activation, and transient conformations of a 468 kDa enzyme by specific 1H–13C labeling and fast magic-angle spinning NMR. <i>Journal of the American Chemical Society</i>. 2019;141(28):11183-11195. doi:<a href=\"https://doi.org/10.1021/jacs.9b04219\">10.1021/jacs.9b04219</a>","apa":"Gauto, D. F., Macek, P., Barducci, A., Fraga, H., Hessel, A., Terauchi, T., … Schanda, P. (2019). Aromatic ring dynamics, thermal activation, and transient conformations of a 468 kDa enzyme by specific 1H–13C labeling and fast magic-angle spinning NMR. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/jacs.9b04219\">https://doi.org/10.1021/jacs.9b04219</a>","ieee":"D. F. Gauto <i>et al.</i>, “Aromatic ring dynamics, thermal activation, and transient conformations of a 468 kDa enzyme by specific 1H–13C labeling and fast magic-angle spinning NMR,” <i>Journal of the American Chemical Society</i>, vol. 141, no. 28. American Chemical Society, pp. 11183–11195, 2019.","chicago":"Gauto, Diego F., Pavel Macek, Alessandro Barducci, Hugo Fraga, Audrey Hessel, Tsutomu Terauchi, David Gajan, et al. “Aromatic Ring Dynamics, Thermal Activation, and Transient Conformations of a 468 KDa Enzyme by Specific 1H–13C Labeling and Fast Magic-Angle Spinning NMR.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2019. <a href=\"https://doi.org/10.1021/jacs.9b04219\">https://doi.org/10.1021/jacs.9b04219</a>.","short":"D.F. Gauto, P. Macek, A. Barducci, H. Fraga, A. Hessel, T. Terauchi, D. Gajan, Y. Miyanoiri, J. Boisbouvier, R. Lichtenecker, M. Kainosho, P. Schanda, Journal of the American Chemical Society 141 (2019) 11183–11195.","mla":"Gauto, Diego F., et al. “Aromatic Ring Dynamics, Thermal Activation, and Transient Conformations of a 468 KDa Enzyme by Specific 1H–13C Labeling and Fast Magic-Angle Spinning NMR.” <i>Journal of the American Chemical Society</i>, vol. 141, no. 28, American Chemical Society, 2019, pp. 11183–95, doi:<a href=\"https://doi.org/10.1021/jacs.9b04219\">10.1021/jacs.9b04219</a>.","ista":"Gauto DF, Macek P, Barducci A, Fraga H, Hessel A, Terauchi T, Gajan D, Miyanoiri Y, Boisbouvier J, Lichtenecker R, Kainosho M, Schanda P. 2019. Aromatic ring dynamics, thermal activation, and transient conformations of a 468 kDa enzyme by specific 1H–13C labeling and fast magic-angle spinning NMR. Journal of the American Chemical Society. 141(28), 11183–11195."},"year":"2019","external_id":{"pmid":["31199882"]},"doi":"10.1021/jacs.9b04219","day":"14","abstract":[{"text":"Aromatic residues are located at structurally important sites of many proteins. Probing their interactions and dynamics can provide important functional insight but is challenging in large proteins. Here, we introduce approaches to characterize dynamics of phenylalanine residues using 1H-detected fast magic-angle spinning (MAS) NMR combined with a tailored isotope-labeling scheme. Our approach yields isolated two-spin systems that are ideally suited for artefact-free dynamics measurements, and allows probing motions effectively without molecular-weight limitations. The application to the TET2 enzyme assembly of ~0.5 MDa size, the currently largest protein assigned by MAS NMR, provides insights into motions occurring on a wide range of time scales (ps-ms). We quantitatively probe ring flip motions, and show the temperature dependence by MAS NMR measurements down to 100 K. Interestingly, favorable line widths are observed down to 100 K, with potential implications for DNP NMR. Furthermore, we report the first 13C R1ρ MAS NMR relaxation-dispersion measurements and detect structural excursions occurring on a microsecond time scale in the entry pore to the catalytic chamber and at a trimer interface that was proposed as exit pore. We show that the labeling scheme with deuteration at ca. 50 kHz MAS provides superior resolution compared to 100 kHz MAS experiments with protonated, uniformly 13C-labeled samples.","lang":"eng"}],"volume":141,"extern":"1"},{"publication_identifier":{"issn":["1047-8477"]},"type":"journal_article","date_published":"2019-04-01T00:00:00Z","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"04","oa_version":"Submitted Version","publication":"Journal of Structural Biology","keyword":["Structural Biology"],"language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"The bacterial cell wall is composed of the peptidoglycan (PG), a large polymer that maintains the integrity of the bacterial cell. Due to its multi-gigadalton size, heterogeneity, and dynamics, atomic-resolution studies are inherently complex. Solid-state NMR is an important technique to gain insight into its structure, dynamics and interactions. Here, we explore the possibilities to study the PG with ultra-fast (100 kHz) magic-angle spinning NMR. We demonstrate that highly resolved spectra can be obtained, and show strategies to obtain site-specific resonance assignments and distance information. We also explore the use of proton-proton correlation experiments, thus opening the way for NMR studies of intact cell walls without the need for isotope labeling."}],"day":"01","doi":"10.1016/j.jsb.2018.07.009","external_id":{"pmid":["30031884"]},"citation":{"mla":"Bougault, Catherine, et al. “Studying Intact Bacterial Peptidoglycan by Proton-Detected NMR Spectroscopy at 100 kHz MAS Frequency.” <i>Journal of Structural Biology</i>, vol. 206, no. 1, Elsevier, 2019, pp. 66–72, doi:<a href=\"https://doi.org/10.1016/j.jsb.2018.07.009\">10.1016/j.jsb.2018.07.009</a>.","short":"C. Bougault, I. Ayala, W. Vollmer, J.-P. Simorre, P. Schanda, Journal of Structural Biology 206 (2019) 66–72.","ista":"Bougault C, Ayala I, Vollmer W, Simorre J-P, Schanda P. 2019. Studying intact bacterial peptidoglycan by proton-detected NMR spectroscopy at 100 kHz MAS frequency. Journal of Structural Biology. 206(1), 66–72.","apa":"Bougault, C., Ayala, I., Vollmer, W., Simorre, J.-P., &#38; Schanda, P. (2019). Studying intact bacterial peptidoglycan by proton-detected NMR spectroscopy at 100 kHz MAS frequency. <i>Journal of Structural Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jsb.2018.07.009\">https://doi.org/10.1016/j.jsb.2018.07.009</a>","ama":"Bougault C, Ayala I, Vollmer W, Simorre J-P, Schanda P. Studying intact bacterial peptidoglycan by proton-detected NMR spectroscopy at 100 kHz MAS frequency. <i>Journal of Structural Biology</i>. 2019;206(1):66-72. doi:<a href=\"https://doi.org/10.1016/j.jsb.2018.07.009\">10.1016/j.jsb.2018.07.009</a>","ieee":"C. Bougault, I. Ayala, W. Vollmer, J.-P. Simorre, and P. Schanda, “Studying intact bacterial peptidoglycan by proton-detected NMR spectroscopy at 100 kHz MAS frequency,” <i>Journal of Structural Biology</i>, vol. 206, no. 1. Elsevier, pp. 66–72, 2019.","chicago":"Bougault, Catherine, Isabel Ayala, Waldemar Vollmer, Jean-Pierre Simorre, and Paul Schanda. “Studying Intact Bacterial Peptidoglycan by Proton-Detected NMR Spectroscopy at 100 kHz MAS Frequency.” <i>Journal of Structural Biology</i>. Elsevier, 2019. <a href=\"https://doi.org/10.1016/j.jsb.2018.07.009\">https://doi.org/10.1016/j.jsb.2018.07.009</a>."},"year":"2019","date_updated":"2021-01-12T08:19:05Z","extern":"1","volume":206,"intvolume":"       206","title":"Studying intact bacterial peptidoglycan by proton-detected NMR spectroscopy at 100 kHz MAS frequency","article_processing_charge":"No","date_created":"2020-09-17T10:29:10Z","publication_status":"published","issue":"1","author":[{"full_name":"Bougault, Catherine","last_name":"Bougault","first_name":"Catherine"},{"full_name":"Ayala, Isabel","first_name":"Isabel","last_name":"Ayala"},{"full_name":"Vollmer, Waldemar","last_name":"Vollmer","first_name":"Waldemar"},{"last_name":"Simorre","first_name":"Jean-Pierre","full_name":"Simorre, Jean-Pierre"},{"id":"7B541462-FAF6-11E9-A490-E8DFE5697425","last_name":"Schanda","first_name":"Paul","full_name":"Schanda, Paul","orcid":"0000-0002-9350-7606"}],"_id":"8409","pmid":1,"article_type":"original","publisher":"Elsevier","quality_controlled":"1","page":"66-72"},{"language":[{"iso":"eng"}],"publication":"ChemPhysChem","month":"01","oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1002/cphc.201801100"}],"date_published":"2019-01-21T00:00:00Z","type":"journal_article","oa":1,"publication_identifier":{"issn":["1439-4235"]},"page":"177-177","quality_controlled":"1","article_type":"letter_note","publisher":"Wiley","author":[{"id":"7B541462-FAF6-11E9-A490-E8DFE5697425","full_name":"Schanda, Paul","orcid":"0000-0002-9350-7606","last_name":"Schanda","first_name":"Paul"},{"full_name":"Chekmenev, Eduard Y.","first_name":"Eduard Y.","last_name":"Chekmenev"}],"issue":"2","_id":"8410","pmid":1,"title":"NMR for Biological Systems","intvolume":"        20","publication_status":"published","date_created":"2020-09-17T10:29:26Z","article_processing_charge":"No","extern":"1","volume":20,"external_id":{"pmid":["30556633"]},"date_updated":"2021-01-12T08:19:05Z","year":"2019","citation":{"ama":"Schanda P, Chekmenev EY. NMR for Biological Systems. <i>ChemPhysChem</i>. 2019;20(2):177-177. doi:<a href=\"https://doi.org/10.1002/cphc.201801100\">10.1002/cphc.201801100</a>","apa":"Schanda, P., &#38; Chekmenev, E. Y. (2019). NMR for Biological Systems. <i>ChemPhysChem</i>. Wiley. <a href=\"https://doi.org/10.1002/cphc.201801100\">https://doi.org/10.1002/cphc.201801100</a>","ieee":"P. Schanda and E. Y. Chekmenev, “NMR for Biological Systems,” <i>ChemPhysChem</i>, vol. 20, no. 2. Wiley, pp. 177–177, 2019.","chicago":"Schanda, Paul, and Eduard Y. Chekmenev. “NMR for Biological Systems.” <i>ChemPhysChem</i>. Wiley, 2019. <a href=\"https://doi.org/10.1002/cphc.201801100\">https://doi.org/10.1002/cphc.201801100</a>.","short":"P. Schanda, E.Y. Chekmenev, ChemPhysChem 20 (2019) 177–177.","mla":"Schanda, Paul, and Eduard Y. Chekmenev. “NMR for Biological Systems.” <i>ChemPhysChem</i>, vol. 20, no. 2, Wiley, 2019, pp. 177–177, doi:<a href=\"https://doi.org/10.1002/cphc.201801100\">10.1002/cphc.201801100</a>.","ista":"Schanda P, Chekmenev EY. 2019. NMR for Biological Systems. ChemPhysChem. 20(2), 177–177."},"doi":"10.1002/cphc.201801100","day":"21"},{"quality_controlled":"1","page":"276-284","publisher":"Wiley","article_type":"original","_id":"8411","pmid":1,"issue":"2","author":[{"full_name":"Marion, Dominique","first_name":"Dominique","last_name":"Marion"},{"last_name":"Gauto","first_name":"Diego F.","full_name":"Gauto, Diego F."},{"last_name":"Ayala","first_name":"Isabel","full_name":"Ayala, Isabel"},{"full_name":"Giandoreggio-Barranco, Karine","last_name":"Giandoreggio-Barranco","first_name":"Karine"},{"id":"7B541462-FAF6-11E9-A490-E8DFE5697425","last_name":"Schanda","first_name":"Paul","full_name":"Schanda, Paul","orcid":"0000-0002-9350-7606"}],"date_created":"2020-09-17T10:29:36Z","article_processing_charge":"No","publication_status":"published","intvolume":"        20","title":"Microsecond protein dynamics from combined Bloch-McConnell and Near-Rotary-Resonance R1p relaxation-dispersion MAS NMR","volume":20,"extern":"1","year":"2019","citation":{"chicago":"Marion, Dominique, Diego F. Gauto, Isabel Ayala, Karine Giandoreggio-Barranco, and Paul Schanda. “Microsecond Protein Dynamics from Combined Bloch-McConnell and Near-Rotary-Resonance R1p Relaxation-Dispersion MAS NMR.” <i>ChemPhysChem</i>. Wiley, 2019. <a href=\"https://doi.org/10.1002/cphc.201800935\">https://doi.org/10.1002/cphc.201800935</a>.","ieee":"D. Marion, D. F. Gauto, I. Ayala, K. Giandoreggio-Barranco, and P. Schanda, “Microsecond protein dynamics from combined Bloch-McConnell and Near-Rotary-Resonance R1p relaxation-dispersion MAS NMR,” <i>ChemPhysChem</i>, vol. 20, no. 2. Wiley, pp. 276–284, 2019.","apa":"Marion, D., Gauto, D. F., Ayala, I., Giandoreggio-Barranco, K., &#38; Schanda, P. (2019). Microsecond protein dynamics from combined Bloch-McConnell and Near-Rotary-Resonance R1p relaxation-dispersion MAS NMR. <i>ChemPhysChem</i>. Wiley. <a href=\"https://doi.org/10.1002/cphc.201800935\">https://doi.org/10.1002/cphc.201800935</a>","ama":"Marion D, Gauto DF, Ayala I, Giandoreggio-Barranco K, Schanda P. Microsecond protein dynamics from combined Bloch-McConnell and Near-Rotary-Resonance R1p relaxation-dispersion MAS NMR. <i>ChemPhysChem</i>. 2019;20(2):276-284. doi:<a href=\"https://doi.org/10.1002/cphc.201800935\">10.1002/cphc.201800935</a>","ista":"Marion D, Gauto DF, Ayala I, Giandoreggio-Barranco K, Schanda P. 2019. Microsecond protein dynamics from combined Bloch-McConnell and Near-Rotary-Resonance R1p relaxation-dispersion MAS NMR. ChemPhysChem. 20(2), 276–284.","mla":"Marion, Dominique, et al. “Microsecond Protein Dynamics from Combined Bloch-McConnell and Near-Rotary-Resonance R1p Relaxation-Dispersion MAS NMR.” <i>ChemPhysChem</i>, vol. 20, no. 2, Wiley, 2019, pp. 276–84, doi:<a href=\"https://doi.org/10.1002/cphc.201800935\">10.1002/cphc.201800935</a>.","short":"D. Marion, D.F. Gauto, I. Ayala, K. Giandoreggio-Barranco, P. Schanda, ChemPhysChem 20 (2019) 276–284."},"date_updated":"2021-01-12T08:19:06Z","external_id":{"pmid":["30444575"]},"day":"21","doi":"10.1002/cphc.201800935","abstract":[{"text":"Studying protein dynamics on microsecond‐to‐millisecond (μs‐ms) time scales can provide important insight into protein function. In magic‐angle‐spinning (MAS) NMR, μs dynamics can be visualized by R1p rotating‐frame relaxation dispersion experiments in different regimes of radio‐frequency field strengths: at low RF field strength, isotropic‐chemical‐shift fluctuation leads to “Bloch‐McConnell‐type” relaxation dispersion, while when the RF field approaches rotary resonance conditions bond angle fluctuations manifest as increased R1p rate constants (“Near‐Rotary‐Resonance Relaxation Dispersion”, NERRD). Here we explore the joint analysis of both regimes to gain comprehensive insight into motion in terms of geometric amplitudes, chemical‐shift changes, populations and exchange kinetics. We use a numerical simulation procedure to illustrate these effects and the potential of extracting exchange parameters, and apply the methodology to the study of a previously described conformational exchange process in microcrystalline ubiquitin.","lang":"eng"}],"keyword":["Physical and Theoretical Chemistry","Atomic and Molecular Physics","and Optics"],"language":[{"iso":"eng"}],"publication":"ChemPhysChem","oa_version":"Submitted Version","month":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","type":"journal_article","date_published":"2019-01-21T00:00:00Z","publication_identifier":{"issn":["1439-4235"]}},{"extern":"1","volume":20,"external_id":{"pmid":["30276945"]},"year":"2019","citation":{"apa":"Shannon, M. D., Theint, T., Mukhopadhyay, D., Surewicz, K., Surewicz, W. K., Marion, D., … Jaroniec, C. P. (2019). Conformational dynamics in the core of human Y145Stop prion protein amyloid probed by relaxation dispersion NMR. <i>ChemPhysChem</i>. Wiley. <a href=\"https://doi.org/10.1002/cphc.201800779\">https://doi.org/10.1002/cphc.201800779</a>","ama":"Shannon MD, Theint T, Mukhopadhyay D, et al. Conformational dynamics in the core of human Y145Stop prion protein amyloid probed by relaxation dispersion NMR. <i>ChemPhysChem</i>. 2019;20(2):311-317. doi:<a href=\"https://doi.org/10.1002/cphc.201800779\">10.1002/cphc.201800779</a>","chicago":"Shannon, Matthew D., Theint Theint, Dwaipayan Mukhopadhyay, Krystyna Surewicz, Witold K. Surewicz, Dominique Marion, Paul Schanda, and Christopher P. Jaroniec. “Conformational Dynamics in the Core of Human Y145Stop Prion Protein Amyloid Probed by Relaxation Dispersion NMR.” <i>ChemPhysChem</i>. Wiley, 2019. <a href=\"https://doi.org/10.1002/cphc.201800779\">https://doi.org/10.1002/cphc.201800779</a>.","ieee":"M. D. Shannon <i>et al.</i>, “Conformational dynamics in the core of human Y145Stop prion protein amyloid probed by relaxation dispersion NMR,” <i>ChemPhysChem</i>, vol. 20, no. 2. Wiley, pp. 311–317, 2019.","short":"M.D. Shannon, T. Theint, D. Mukhopadhyay, K. Surewicz, W.K. Surewicz, D. Marion, P. Schanda, C.P. Jaroniec, ChemPhysChem 20 (2019) 311–317.","mla":"Shannon, Matthew D., et al. “Conformational Dynamics in the Core of Human Y145Stop Prion Protein Amyloid Probed by Relaxation Dispersion NMR.” <i>ChemPhysChem</i>, vol. 20, no. 2, Wiley, 2019, pp. 311–17, doi:<a href=\"https://doi.org/10.1002/cphc.201800779\">10.1002/cphc.201800779</a>.","ista":"Shannon MD, Theint T, Mukhopadhyay D, Surewicz K, Surewicz WK, Marion D, Schanda P, Jaroniec CP. 2019. Conformational dynamics in the core of human Y145Stop prion protein amyloid probed by relaxation dispersion NMR. ChemPhysChem. 20(2), 311–317."},"date_updated":"2021-01-12T08:19:06Z","abstract":[{"text":"Microsecond to millisecond timescale backbone dynamics of the amyloid core residues in Y145Stop human prion protein (PrP) fibrils were investigated by using 15N rotating frame (R1ρ) relaxation dispersion solid‐state nuclear magnetic resonance spectroscopy over a wide range of spin‐lock fields. Numerical simulations enabled the experimental relaxation dispersion profiles for most of the fibril core residues to be modelled by using a two‐state exchange process with a common exchange rate of 1000 s−1, corresponding to protein backbone motion on the timescale of 1 ms, and an excited‐state population of 2 %. We also found that the relaxation dispersion profiles for several amino acids positioned near the edges of the most structured regions of the amyloid core were better modelled by assuming somewhat higher excited‐state populations (∼5–15 %) and faster exchange rate constants, corresponding to protein backbone motions on the timescale of ∼100–300 μs. The slow backbone dynamics of the core residues were evaluated in the context of the structural model of human Y145Stop PrP amyloid.","lang":"eng"}],"day":"21","doi":"10.1002/cphc.201800779","quality_controlled":"1","page":"311-317","article_type":"original","publisher":"Wiley","issue":"2","author":[{"first_name":"Matthew D.","last_name":"Shannon","full_name":"Shannon, Matthew D."},{"full_name":"Theint, Theint","last_name":"Theint","first_name":"Theint"},{"full_name":"Mukhopadhyay, Dwaipayan","first_name":"Dwaipayan","last_name":"Mukhopadhyay"},{"full_name":"Surewicz, Krystyna","last_name":"Surewicz","first_name":"Krystyna"},{"first_name":"Witold K.","last_name":"Surewicz","full_name":"Surewicz, Witold K."},{"full_name":"Marion, Dominique","first_name":"Dominique","last_name":"Marion"},{"id":"7B541462-FAF6-11E9-A490-E8DFE5697425","first_name":"Paul","last_name":"Schanda","orcid":"0000-0002-9350-7606","full_name":"Schanda, Paul"},{"full_name":"Jaroniec, Christopher P.","last_name":"Jaroniec","first_name":"Christopher P."}],"pmid":1,"_id":"8412","intvolume":"        20","title":"Conformational dynamics in the core of human Y145Stop prion protein amyloid probed by relaxation dispersion NMR","article_processing_charge":"No","date_created":"2020-09-17T10:29:43Z","publication_status":"published","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","date_published":"2019-01-21T00:00:00Z","publication_identifier":{"issn":["1439-4235"]},"keyword":["Physical and Theoretical Chemistry","Atomic and Molecular Physics","and Optics"],"language":[{"iso":"eng"}],"publication":"ChemPhysChem","month":"01","oa_version":"Submitted Version"},{"keyword":["Colloid and Surface Chemistry","Biochemistry","General Chemistry","Catalysis"],"language":[{"iso":"eng"}],"oa_version":"Submitted Version","month":"01","publication":"Journal of the American Chemical Society","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","publication_identifier":{"issn":["0002-7863","1520-5126"]},"type":"journal_article","date_published":"2019-01-08T00:00:00Z","publisher":"American Chemical Society","article_type":"original","quality_controlled":"1","page":"858-869","date_created":"2020-09-17T10:29:50Z","article_processing_charge":"No","publication_status":"published","intvolume":"       141","title":"Mechanistic insights into microsecond time-scale motion of solid proteins using complementary 15N and 1H relaxation dispersion techniques","_id":"8413","pmid":1,"issue":"2","author":[{"first_name":"Petra","last_name":"Rovó","full_name":"Rovó, Petra"},{"full_name":"Smith, Colin A.","first_name":"Colin A.","last_name":"Smith"},{"full_name":"Gauto, Diego","last_name":"Gauto","first_name":"Diego"},{"last_name":"de Groot","first_name":"Bert L.","full_name":"de Groot, Bert L."},{"orcid":"0000-0002-9350-7606","full_name":"Schanda, Paul","first_name":"Paul","last_name":"Schanda","id":"7B541462-FAF6-11E9-A490-E8DFE5697425"},{"full_name":"Linser, Rasmus","last_name":"Linser","first_name":"Rasmus"}],"volume":141,"extern":"1","day":"08","doi":"10.1021/jacs.8b09258","abstract":[{"lang":"eng","text":"NMR relaxation dispersion methods provide a holistic way to observe microsecond time-scale protein backbone motion both in solution and in the solid state. Different nuclei (1H and 15N) and different relaxation dispersion techniques (Bloch–McConnell and near-rotary-resonance) give complementary information about the amplitudes and time scales of the conformational dynamics and provide comprehensive insights into the mechanistic details of the structural rearrangements. In this paper, we exemplify the benefits of the combination of various solution- and solid-state relaxation dispersion methods on a microcrystalline protein (α-spectrin SH3 domain), for which we are able to identify and model the functionally relevant conformational rearrangements around the ligand recognition loop occurring on multiple microsecond time scales. The observed loop motions suggest that the SH3 domain exists in a binding-competent conformation in dynamic equilibrium with a sterically impaired ground-state conformation both in solution and in crystalline form. This inherent plasticity between the interconverting macrostates is compatible with a conformational-preselection model and provides new insights into the recognition mechanisms of SH3 domains."}],"year":"2019","citation":{"short":"P. Rovó, C.A. Smith, D. Gauto, B.L. de Groot, P. Schanda, R. Linser, Journal of the American Chemical Society 141 (2019) 858–869.","mla":"Rovó, Petra, et al. “Mechanistic Insights into Microsecond Time-Scale Motion of Solid Proteins Using Complementary 15N and 1H Relaxation Dispersion Techniques.” <i>Journal of the American Chemical Society</i>, vol. 141, no. 2, American Chemical Society, 2019, pp. 858–69, doi:<a href=\"https://doi.org/10.1021/jacs.8b09258\">10.1021/jacs.8b09258</a>.","ista":"Rovó P, Smith CA, Gauto D, de Groot BL, Schanda P, Linser R. 2019. Mechanistic insights into microsecond time-scale motion of solid proteins using complementary 15N and 1H relaxation dispersion techniques. Journal of the American Chemical Society. 141(2), 858–869.","apa":"Rovó, P., Smith, C. A., Gauto, D., de Groot, B. L., Schanda, P., &#38; Linser, R. (2019). Mechanistic insights into microsecond time-scale motion of solid proteins using complementary 15N and 1H relaxation dispersion techniques. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/jacs.8b09258\">https://doi.org/10.1021/jacs.8b09258</a>","ama":"Rovó P, Smith CA, Gauto D, de Groot BL, Schanda P, Linser R. Mechanistic insights into microsecond time-scale motion of solid proteins using complementary 15N and 1H relaxation dispersion techniques. <i>Journal of the American Chemical Society</i>. 2019;141(2):858-869. doi:<a href=\"https://doi.org/10.1021/jacs.8b09258\">10.1021/jacs.8b09258</a>","chicago":"Rovó, Petra, Colin A. Smith, Diego Gauto, Bert L. de Groot, Paul Schanda, and Rasmus Linser. “Mechanistic Insights into Microsecond Time-Scale Motion of Solid Proteins Using Complementary 15N and 1H Relaxation Dispersion Techniques.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2019. <a href=\"https://doi.org/10.1021/jacs.8b09258\">https://doi.org/10.1021/jacs.8b09258</a>.","ieee":"P. Rovó, C. A. Smith, D. Gauto, B. L. de Groot, P. Schanda, and R. Linser, “Mechanistic insights into microsecond time-scale motion of solid proteins using complementary 15N and 1H relaxation dispersion techniques,” <i>Journal of the American Chemical Society</i>, vol. 141, no. 2. American Chemical Society, pp. 858–869, 2019."},"date_updated":"2021-01-12T08:19:07Z","external_id":{"pmid":["30620186"]}},{"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1809.08947"}],"status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","date_published":"2019-05-09T00:00:00Z","publication_identifier":{"issn":["0010-3616","1432-0916"]},"oa":1,"keyword":["Mathematical Physics","Statistical and Nonlinear Physics"],"language":[{"iso":"eng"}],"publication":"Communications in Mathematical Physics","oa_version":"Preprint","month":"05","volume":374,"extern":"1","year":"2019","citation":{"mla":"Bálint, Péter, et al. “Marked Length Spectrum, Homoclinic Orbits and the Geometry of Open Dispersing Billiards.” <i>Communications in Mathematical Physics</i>, vol. 374, no. 3, Springer Nature, 2019, pp. 1531–75, doi:<a href=\"https://doi.org/10.1007/s00220-019-03448-x\">10.1007/s00220-019-03448-x</a>.","short":"P. Bálint, J. De Simoi, V. Kaloshin, M. Leguil, Communications in Mathematical Physics 374 (2019) 1531–1575.","ista":"Bálint P, De Simoi J, Kaloshin V, Leguil M. 2019. Marked length spectrum, homoclinic orbits and the geometry of open dispersing billiards. Communications in Mathematical Physics. 374(3), 1531–1575.","ama":"Bálint P, De Simoi J, Kaloshin V, Leguil M. Marked length spectrum, homoclinic orbits and the geometry of open dispersing billiards. <i>Communications in Mathematical Physics</i>. 2019;374(3):1531-1575. doi:<a href=\"https://doi.org/10.1007/s00220-019-03448-x\">10.1007/s00220-019-03448-x</a>","apa":"Bálint, P., De Simoi, J., Kaloshin, V., &#38; Leguil, M. (2019). Marked length spectrum, homoclinic orbits and the geometry of open dispersing billiards. <i>Communications in Mathematical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00220-019-03448-x\">https://doi.org/10.1007/s00220-019-03448-x</a>","chicago":"Bálint, Péter, Jacopo De Simoi, Vadim Kaloshin, and Martin Leguil. “Marked Length Spectrum, Homoclinic Orbits and the Geometry of Open Dispersing Billiards.” <i>Communications in Mathematical Physics</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1007/s00220-019-03448-x\">https://doi.org/10.1007/s00220-019-03448-x</a>.","ieee":"P. Bálint, J. De Simoi, V. Kaloshin, and M. Leguil, “Marked length spectrum, homoclinic orbits and the geometry of open dispersing billiards,” <i>Communications in Mathematical Physics</i>, vol. 374, no. 3. Springer Nature, pp. 1531–1575, 2019."},"date_updated":"2021-01-12T08:19:08Z","external_id":{"arxiv":["1809.08947"]},"day":"09","doi":"10.1007/s00220-019-03448-x","arxiv":1,"abstract":[{"lang":"eng","text":"We consider billiards obtained by removing three strictly convex obstacles satisfying the non-eclipse condition on the plane. The restriction of the dynamics to the set of non-escaping orbits is conjugated to a subshift on three symbols that provides a natural labeling of all periodic orbits. We study the following inverse problem: does the Marked Length Spectrum (i.e., the set of lengths of periodic orbits together with their labeling), determine the geometry of the billiard table? We show that from the Marked Length Spectrum it is possible to recover the curvature at periodic points of period two, as well as the Lyapunov exponent of each periodic orbit."}],"quality_controlled":"1","page":"1531-1575","publisher":"Springer Nature","article_type":"original","_id":"8415","issue":"3","author":[{"full_name":"Bálint, Péter","first_name":"Péter","last_name":"Bálint"},{"last_name":"De Simoi","first_name":"Jacopo","full_name":"De Simoi, Jacopo"},{"id":"FE553552-CDE8-11E9-B324-C0EBE5697425","orcid":"0000-0002-6051-2628","full_name":"Kaloshin, Vadim","first_name":"Vadim","last_name":"Kaloshin"},{"full_name":"Leguil, Martin","last_name":"Leguil","first_name":"Martin"}],"article_processing_charge":"No","date_created":"2020-09-17T10:41:27Z","publication_status":"published","intvolume":"       374","title":"Marked length spectrum, homoclinic orbits and the geometry of open dispersing billiards"},{"publication":"Moscow Mathematical Journal","oa_version":"Preprint","month":"04","language":[{"iso":"eng"}],"type":"journal_article","date_published":"2019-04-01T00:00:00Z","publication_identifier":{"issn":["1609-4514"]},"oa":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1809.09341"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","_id":"8416","issue":"2","author":[{"last_name":"Huang","first_name":"Guan","full_name":"Huang, Guan"},{"id":"FE553552-CDE8-11E9-B324-C0EBE5697425","full_name":"Kaloshin, Vadim","orcid":"0000-0002-6051-2628","last_name":"Kaloshin","first_name":"Vadim"}],"article_processing_charge":"No","date_created":"2020-09-17T10:41:36Z","publication_status":"published","intvolume":"        19","title":"On the finite dimensionality of integrable deformations of strictly convex integrable billiard tables","quality_controlled":"1","page":"307-327","publisher":"American Mathematical Society","article_type":"original","citation":{"ista":"Huang G, Kaloshin V. 2019. On the finite dimensionality of integrable deformations of strictly convex integrable billiard tables. Moscow Mathematical Journal. 19(2), 307–327.","mla":"Huang, Guan, and Vadim Kaloshin. “On the Finite Dimensionality of Integrable Deformations of Strictly Convex Integrable Billiard Tables.” <i>Moscow Mathematical Journal</i>, vol. 19, no. 2, American Mathematical Society, 2019, pp. 307–27, doi:<a href=\"https://doi.org/10.17323/1609-4514-2019-19-2-307-327\">10.17323/1609-4514-2019-19-2-307-327</a>.","short":"G. Huang, V. Kaloshin, Moscow Mathematical Journal 19 (2019) 307–327.","chicago":"Huang, Guan, and Vadim Kaloshin. “On the Finite Dimensionality of Integrable Deformations of Strictly Convex Integrable Billiard Tables.” <i>Moscow Mathematical Journal</i>. American Mathematical Society, 2019. <a href=\"https://doi.org/10.17323/1609-4514-2019-19-2-307-327\">https://doi.org/10.17323/1609-4514-2019-19-2-307-327</a>.","ieee":"G. Huang and V. Kaloshin, “On the finite dimensionality of integrable deformations of strictly convex integrable billiard tables,” <i>Moscow Mathematical Journal</i>, vol. 19, no. 2. American Mathematical Society, pp. 307–327, 2019.","apa":"Huang, G., &#38; Kaloshin, V. (2019). On the finite dimensionality of integrable deformations of strictly convex integrable billiard tables. <i>Moscow Mathematical Journal</i>. American Mathematical Society. <a href=\"https://doi.org/10.17323/1609-4514-2019-19-2-307-327\">https://doi.org/10.17323/1609-4514-2019-19-2-307-327</a>","ama":"Huang G, Kaloshin V. On the finite dimensionality of integrable deformations of strictly convex integrable billiard tables. <i>Moscow Mathematical Journal</i>. 2019;19(2):307-327. doi:<a href=\"https://doi.org/10.17323/1609-4514-2019-19-2-307-327\">10.17323/1609-4514-2019-19-2-307-327</a>"},"year":"2019","date_updated":"2021-01-12T08:19:08Z","external_id":{"arxiv":["1809.09341"]},"day":"01","doi":"10.17323/1609-4514-2019-19-2-307-327","arxiv":1,"abstract":[{"text":"In this paper, we show that any smooth one-parameter deformations of a strictly convex integrable billiard table Ω0 preserving the integrability near the boundary have to be tangent to a finite dimensional space passing through Ω0.","lang":"eng"}],"volume":19,"extern":"1"},{"_id":"8418","author":[{"full_name":"Guardia, Marcel","last_name":"Guardia","first_name":"Marcel"},{"id":"FE553552-CDE8-11E9-B324-C0EBE5697425","last_name":"Kaloshin","first_name":"Vadim","full_name":"Kaloshin, Vadim","orcid":"0000-0002-6051-2628"},{"first_name":"Jianlu","last_name":"Zhang","full_name":"Zhang, Jianlu"}],"issue":"2","publication_status":"published","date_created":"2020-09-17T10:41:51Z","article_processing_charge":"No","title":"Asymptotic density of collision orbits in the Restricted Circular Planar 3 Body Problem","intvolume":"       233","page":"799-836","quality_controlled":"1","publisher":"Springer Nature","article_type":"original","date_updated":"2021-01-12T08:19:09Z","year":"2019","citation":{"ista":"Guardia M, Kaloshin V, Zhang J. 2019. Asymptotic density of collision orbits in the Restricted Circular Planar 3 Body Problem. Archive for Rational Mechanics and Analysis. 233(2), 799–836.","mla":"Guardia, Marcel, et al. “Asymptotic Density of Collision Orbits in the Restricted Circular Planar 3 Body Problem.” <i>Archive for Rational Mechanics and Analysis</i>, vol. 233, no. 2, Springer Nature, 2019, pp. 799–836, doi:<a href=\"https://doi.org/10.1007/s00205-019-01368-7\">10.1007/s00205-019-01368-7</a>.","short":"M. Guardia, V. Kaloshin, J. Zhang, Archive for Rational Mechanics and Analysis 233 (2019) 799–836.","ieee":"M. Guardia, V. Kaloshin, and J. Zhang, “Asymptotic density of collision orbits in the Restricted Circular Planar 3 Body Problem,” <i>Archive for Rational Mechanics and Analysis</i>, vol. 233, no. 2. Springer Nature, pp. 799–836, 2019.","chicago":"Guardia, Marcel, Vadim Kaloshin, and Jianlu Zhang. “Asymptotic Density of Collision Orbits in the Restricted Circular Planar 3 Body Problem.” <i>Archive for Rational Mechanics and Analysis</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1007/s00205-019-01368-7\">https://doi.org/10.1007/s00205-019-01368-7</a>.","apa":"Guardia, M., Kaloshin, V., &#38; Zhang, J. (2019). Asymptotic density of collision orbits in the Restricted Circular Planar 3 Body Problem. <i>Archive for Rational Mechanics and Analysis</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00205-019-01368-7\">https://doi.org/10.1007/s00205-019-01368-7</a>","ama":"Guardia M, Kaloshin V, Zhang J. Asymptotic density of collision orbits in the Restricted Circular Planar 3 Body Problem. <i>Archive for Rational Mechanics and Analysis</i>. 2019;233(2):799-836. doi:<a href=\"https://doi.org/10.1007/s00205-019-01368-7\">10.1007/s00205-019-01368-7</a>"},"doi":"10.1007/s00205-019-01368-7","day":"12","abstract":[{"text":"For the Restricted Circular Planar 3 Body Problem, we show that there exists an open set U in phase space of fixed measure, where the set of initial points which lead to collision is O(μ120) dense as μ→0.","lang":"eng"}],"volume":233,"extern":"1","publication":"Archive for Rational Mechanics and Analysis","oa_version":"Published Version","month":"03","language":[{"iso":"eng"}],"keyword":["Mechanical Engineering","Mathematics (miscellaneous)","Analysis"],"date_published":"2019-03-12T00:00:00Z","type":"journal_article","publication_identifier":{"issn":["0003-9527","1432-0673"]},"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1007/s00205-019-01368-7"}],"status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"oa":1,"abstract":[{"text":"This report presents the results of a friendly competition for formal verification of continuous and hybrid systems with linear continuous dynamics. The friendly competition took place as part of the workshop Applied Verification for Continuous and Hybrid Systems (ARCH) in 2019. In its third edition, seven tools have been applied to solve six different benchmark problems in the category for linear continuous dynamics (in alphabetical order): CORA, CORA/SX, HyDRA, Hylaa, JuliaReach, SpaceEx, and XSpeed. This report is a snapshot of the current landscape of tools and the types of benchmarks they are particularly suited for. Due to the diversity of problems, we are not ranking tools, yet the presented results provide one of the most complete assessments of tools for the safety verification of continuous and hybrid systems with linear continuous dynamics up to this date.</jats:p>","lang":"eng"}],"publication_identifier":{"eissn":["23987340"]},"day":"25","doi":"10.29007/bj1w","type":"conference","date_published":"2019-05-25T00:00:00Z","citation":{"apa":"Althoff, M., Bak, S., Forets, M., Frehse, G., Kochdumper, N., Ray, R., … Schupp, S. (2019). ARCH-COMP19 Category Report: Continuous and hybrid systems with linear continuous dynamics. In <i>EPiC Series in Computing</i> (Vol. 61, pp. 14–40). Montreal, Canada: EasyChair. <a href=\"https://doi.org/10.29007/bj1w\">https://doi.org/10.29007/bj1w</a>","ama":"Althoff M, Bak S, Forets M, et al. ARCH-COMP19 Category Report: Continuous and hybrid systems with linear continuous dynamics. In: <i>EPiC Series in Computing</i>. Vol 61. EasyChair; 2019:14-40. doi:<a href=\"https://doi.org/10.29007/bj1w\">10.29007/bj1w</a>","chicago":"Althoff, Matthias, Stanley Bak, Marcelo Forets, Goran Frehse, Niklas Kochdumper, Rajarshi Ray, Christian Schilling, and Stefan Schupp. “ARCH-COMP19 Category Report: Continuous and Hybrid Systems with Linear Continuous Dynamics.” In <i>EPiC Series in Computing</i>, 61:14–40. EasyChair, 2019. <a href=\"https://doi.org/10.29007/bj1w\">https://doi.org/10.29007/bj1w</a>.","ieee":"M. Althoff <i>et al.</i>, “ARCH-COMP19 Category Report: Continuous and hybrid systems with linear continuous dynamics,” in <i>EPiC Series in Computing</i>, Montreal, Canada, 2019, vol. 61, pp. 14–40.","mla":"Althoff, Matthias, et al. “ARCH-COMP19 Category Report: Continuous and Hybrid Systems with Linear Continuous Dynamics.” <i>EPiC Series in Computing</i>, vol. 61, EasyChair, 2019, pp. 14–40, doi:<a href=\"https://doi.org/10.29007/bj1w\">10.29007/bj1w</a>.","short":"M. Althoff, S. Bak, M. Forets, G. Frehse, N. Kochdumper, R. Ray, C. Schilling, S. Schupp, in:, EPiC Series in Computing, EasyChair, 2019, pp. 14–40.","ista":"Althoff M, Bak S, Forets M, Frehse G, Kochdumper N, Ray R, Schilling C, Schupp S. 2019. ARCH-COMP19 Category Report: Continuous and hybrid systems with linear continuous dynamics. EPiC Series in Computing. ARCH: International Workshop on Applied Verification on Continuous and Hybrid Systems vol. 61, 14–40."},"year":"2019","date_updated":"2021-01-12T08:20:05Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","main_file_link":[{"open_access":"1","url":"https://easychair.org/publications/open/1gbP"}],"volume":61,"intvolume":"        61","month":"05","title":"ARCH-COMP19 Category Report: Continuous and hybrid systems with linear continuous dynamics","article_processing_charge":"No","date_created":"2020-09-26T14:23:54Z","department":[{"_id":"ToHe"}],"publication_status":"published","oa_version":"Published Version","author":[{"full_name":"Althoff, Matthias","first_name":"Matthias","last_name":"Althoff"},{"full_name":"Bak, Stanley","first_name":"Stanley","last_name":"Bak"},{"first_name":"Marcelo","last_name":"Forets","full_name":"Forets, Marcelo"},{"full_name":"Frehse, Goran","last_name":"Frehse","first_name":"Goran"},{"full_name":"Kochdumper, Niklas","last_name":"Kochdumper","first_name":"Niklas"},{"first_name":"Rajarshi","last_name":"Ray","full_name":"Ray, Rajarshi"},{"id":"3A2F4DCE-F248-11E8-B48F-1D18A9856A87","full_name":"Schilling, Christian","orcid":"0000-0003-3658-1065","last_name":"Schilling","first_name":"Christian"},{"first_name":"Stefan","last_name":"Schupp","full_name":"Schupp, Stefan"}],"_id":"8570","publication":"EPiC Series in Computing","conference":{"start_date":"2019-04-15","name":"ARCH: International Workshop on Applied Verification on Continuous and Hybrid Systems","location":"Montreal, Canada","end_date":"2019-04-15"},"publisher":"EasyChair","language":[{"iso":"eng"}],"quality_controlled":"1","page":"14-40"},{"publication":"Regular and Chaotic Dynamics","oa_version":"Preprint","month":"12","language":[{"iso":"eng"}],"type":"journal_article","date_published":"2019-12-10T00:00:00Z","oa":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1908.02523"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","_id":"8693","author":[{"full_name":"Chierchia, Luigi","last_name":"Chierchia","first_name":"Luigi"},{"last_name":"Koudjinan","first_name":"Edmond","full_name":"Koudjinan, Edmond","orcid":"0000-0003-2640-4049","id":"52DF3E68-AEFA-11EA-95A4-124A3DDC885E"}],"article_processing_charge":"No","date_created":"2020-10-21T15:25:45Z","publication_status":"published","intvolume":"        24","title":"V. I. Arnold’s “pointwise” KAM theorem","quality_controlled":"1","page":"583–606","publisher":"Springer","article_type":"original","citation":{"mla":"Chierchia, Luigi, and Edmond Koudjinan. “V. I. Arnold’s ‘Pointwise’ KAM Theorem.” <i>Regular and Chaotic Dynamics</i>, vol. 24, Springer, 2019, pp. 583–606, doi:<a href=\"https://doi.org/10.1134/S1560354719060017\">10.1134/S1560354719060017</a>.","short":"L. Chierchia, E. Koudjinan, Regular and Chaotic Dynamics 24 (2019) 583–606.","ista":"Chierchia L, Koudjinan E. 2019. V. I. Arnold’s “pointwise” KAM theorem. Regular and Chaotic Dynamics. 24, 583–606.","apa":"Chierchia, L., &#38; Koudjinan, E. (2019). V. I. Arnold’s “pointwise” KAM theorem. <i>Regular and Chaotic Dynamics</i>. Springer. <a href=\"https://doi.org/10.1134/S1560354719060017\">https://doi.org/10.1134/S1560354719060017</a>","ama":"Chierchia L, Koudjinan E. V. I. Arnold’s “pointwise” KAM theorem. <i>Regular and Chaotic Dynamics</i>. 2019;24:583–606. doi:<a href=\"https://doi.org/10.1134/S1560354719060017\">10.1134/S1560354719060017</a>","chicago":"Chierchia, Luigi, and Edmond Koudjinan. “V. I. Arnold’s ‘Pointwise’ KAM Theorem.” <i>Regular and Chaotic Dynamics</i>. Springer, 2019. <a href=\"https://doi.org/10.1134/S1560354719060017\">https://doi.org/10.1134/S1560354719060017</a>.","ieee":"L. Chierchia and E. Koudjinan, “V. I. Arnold’s ‘pointwise’ KAM theorem,” <i>Regular and Chaotic Dynamics</i>, vol. 24. Springer, pp. 583–606, 2019."},"year":"2019","date_updated":"2021-01-12T08:20:34Z","external_id":{"arxiv":["1908.02523"]},"day":"10","doi":"10.1134/S1560354719060017","arxiv":1,"abstract":[{"text":"We review V. I. Arnold’s 1963 celebrated paper [1] Proof of A. N. Kolmogorov’s Theorem on the Conservation of Conditionally Periodic Motions with a Small Variation in the Hamiltonian, and prove that, optimising Arnold’s scheme, one can get “sharp” asymptotic quantitative conditions (as ε → 0, ε being the strength of the perturbation). All constants involved are explicitly computed.","lang":"eng"}],"volume":24,"extern":"1"},{"page":"977-1016","quality_controlled":"1","file_date_updated":"2020-07-14T12:45:12Z","publisher":"Springer Nature","_id":"170","license":"https://creativecommons.org/licenses/by/4.0/","author":[{"orcid":"0000-0002-8314-0177","full_name":"Browning, Timothy D","first_name":"Timothy D","last_name":"Browning","id":"35827D50-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Sofos, Efthymios","first_name":"Efthymios","last_name":"Sofos"}],"issue":"3-4","publication_status":"published","date_created":"2018-12-11T11:44:59Z","title":"Counting rational points on quartic del Pezzo surfaces with a rational conic","intvolume":"       373","volume":373,"extern":"1","ddc":["510"],"date_updated":"2021-01-12T06:52:37Z","citation":{"ista":"Browning TD, Sofos E. 2019. Counting rational points on quartic del Pezzo surfaces with a rational conic. Mathematische Annalen. 373(3–4), 977–1016.","mla":"Browning, Timothy D., and Efthymios Sofos. “Counting Rational Points on Quartic Del Pezzo Surfaces with a Rational Conic.” <i>Mathematische Annalen</i>, vol. 373, no. 3–4, Springer Nature, 2019, pp. 977–1016, doi:<a href=\"https://doi.org/10.1007/s00208-018-1716-6\">10.1007/s00208-018-1716-6</a>.","short":"T.D. Browning, E. Sofos, Mathematische Annalen 373 (2019) 977–1016.","ieee":"T. D. Browning and E. Sofos, “Counting rational points on quartic del Pezzo surfaces with a rational conic,” <i>Mathematische Annalen</i>, vol. 373, no. 3–4. Springer Nature, pp. 977–1016, 2019.","chicago":"Browning, Timothy D, and Efthymios Sofos. “Counting Rational Points on Quartic Del Pezzo Surfaces with a Rational Conic.” <i>Mathematische Annalen</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1007/s00208-018-1716-6\">https://doi.org/10.1007/s00208-018-1716-6</a>.","apa":"Browning, T. D., &#38; Sofos, E. (2019). Counting rational points on quartic del Pezzo surfaces with a rational conic. <i>Mathematische Annalen</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00208-018-1716-6\">https://doi.org/10.1007/s00208-018-1716-6</a>","ama":"Browning TD, Sofos E. Counting rational points on quartic del Pezzo surfaces with a rational conic. <i>Mathematische Annalen</i>. 2019;373(3-4):977-1016. doi:<a href=\"https://doi.org/10.1007/s00208-018-1716-6\">10.1007/s00208-018-1716-6</a>"},"year":"2019","external_id":{"arxiv":["1609.09057"]},"arxiv":1,"doi":"10.1007/s00208-018-1716-6","day":"01","abstract":[{"text":"Upper and lower bounds, of the expected order of magnitude, are obtained for the number of rational points of bounded height on any quartic del Pezzo surface over   ℚ  that contains a conic defined over   ℚ .","lang":"eng"}],"language":[{"iso":"eng"}],"publication":"Mathematische Annalen","has_accepted_license":"1","oa_version":"Published Version","month":"04","file":[{"access_level":"open_access","relation":"main_file","file_id":"6479","creator":"dernst","date_created":"2019-05-23T07:53:27Z","checksum":"4061dc2fe99bee25d9adf2d2018cf608","file_size":712847,"date_updated":"2020-07-14T12:45:12Z","file_name":"2019_MathAnnalen_Browning.pdf","content_type":"application/pdf"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"date_published":"2019-04-01T00:00:00Z","type":"journal_article","oa":1},{"volume":371,"abstract":[{"lang":"eng","text":"An upper bound sieve for rational points on suitable varieties isdeveloped, together with applications tocounting rational points in thin sets,to local solubility in families, and to the notion of “friable” rational pointswith respect to divisors. In the special case of quadrics, sharper estimates areobtained by developing a version of the Selberg sieve for rational points."}],"arxiv":1,"doi":"10.1090/tran/7514","day":"15","isi":1,"external_id":{"isi":["000464034200019"],"arxiv":["1705.01999"]},"date_updated":"2023-08-24T14:34:56Z","year":"2019","citation":{"ista":"Browning TD, Loughran D. 2019. Sieving rational points on varieties. Transactions of the American Mathematical Society. 371(8), 5757–5785.","short":"T.D. Browning, D. Loughran, Transactions of the American Mathematical Society 371 (2019) 5757–5785.","mla":"Browning, Timothy D., and Daniel Loughran. “Sieving Rational Points on Varieties.” <i>Transactions of the American Mathematical Society</i>, vol. 371, no. 8, American Mathematical Society, 2019, pp. 5757–85, doi:<a href=\"https://doi.org/10.1090/tran/7514\">10.1090/tran/7514</a>.","ieee":"T. D. Browning and D. Loughran, “Sieving rational points on varieties,” <i>Transactions of the American Mathematical Society</i>, vol. 371, no. 8. American Mathematical Society, pp. 5757–5785, 2019.","chicago":"Browning, Timothy D, and Daniel Loughran. “Sieving Rational Points on Varieties.” <i>Transactions of the American Mathematical Society</i>. American Mathematical Society, 2019. <a href=\"https://doi.org/10.1090/tran/7514\">https://doi.org/10.1090/tran/7514</a>.","apa":"Browning, T. D., &#38; Loughran, D. (2019). Sieving rational points on varieties. <i>Transactions of the American Mathematical Society</i>. American Mathematical Society. <a href=\"https://doi.org/10.1090/tran/7514\">https://doi.org/10.1090/tran/7514</a>","ama":"Browning TD, Loughran D. Sieving rational points on varieties. <i>Transactions of the American Mathematical Society</i>. 2019;371(8):5757-5785. doi:<a href=\"https://doi.org/10.1090/tran/7514\">10.1090/tran/7514</a>"},"publisher":"American Mathematical Society","page":"5757-5785","quality_controlled":"1","title":"Sieving rational points on varieties","intvolume":"       371","publication_status":"published","date_created":"2018-12-11T11:45:01Z","department":[{"_id":"TiBr"}],"article_processing_charge":"No","author":[{"id":"35827D50-F248-11E8-B48F-1D18A9856A87","last_name":"Browning","first_name":"Timothy D","full_name":"Browning, Timothy D","orcid":"0000-0002-8314-0177"},{"last_name":"Loughran","first_name":"Daniel","full_name":"Loughran, Daniel"}],"issue":"8","_id":"175","scopus_import":"1","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","status":"public","main_file_link":[{"url":"https://arxiv.org/abs/1705.01999","open_access":"1"}],"publist_id":"7746","oa":1,"publication_identifier":{"eissn":["10886850"],"issn":["00029947"]},"date_published":"2019-04-15T00:00:00Z","type":"journal_article","language":[{"iso":"eng"}],"month":"04","oa_version":"Preprint","publication":"Transactions of the American Mathematical Society"},{"abstract":[{"text":"The abelian sandpile serves as a model to study self-organized criticality, a phenomenon occurring in biological, physical and social processes. The identity of the abelian group is a fractal composed of self-similar patches, and its limit is subject of extensive collaborative research. Here, we analyze the evolution of the sandpile identity under harmonic fields of different orders. We show that this evolution corresponds to periodic cycles through the abelian group characterized by the smooth transformation and apparent conservation of the patches constituting the identity. The dynamics induced by second and third order harmonics resemble smooth stretchings, respectively translations, of the identity, while the ones induced by fourth order harmonics resemble magnifications and rotations. Starting with order three, the dynamics pass through extended regions of seemingly random configurations which spontaneously reassemble into accentuated patterns. We show that the space of harmonic functions projects to the extended analogue of the sandpile group, thus providing a set of universal coordinates identifying configurations between different domains. Since the original sandpile group is a subgroup of the extended one, this directly implies that it admits a natural renormalization. Furthermore, we show that the harmonic fields can be induced by simple Markov processes, and that the corresponding stochastic dynamics show remarkable robustness over hundreds of periods. Finally, we encode information into seemingly random configurations, and decode this information with an algorithm requiring minimal prior knowledge. Our results suggest that harmonic fields might split the sandpile group into sub-sets showing different critical coefficients, and that it might be possible to extend the fractal structure of the identity beyond the boundaries of its domain. ","lang":"eng"}],"arxiv":1,"doi":"10.1073/pnas.1812015116","day":"19","isi":1,"external_id":{"pmid":[" 30728300"],"isi":["000459074400013"],"arxiv":["1806.10823"]},"date_updated":"2023-09-11T14:09:34Z","year":"2019","citation":{"ista":"Lang M, Shkolnikov M. 2019. Harmonic dynamics of the Abelian sandpile. Proceedings of the National Academy of Sciences. 116(8), 2821–2830.","mla":"Lang, Moritz, and Mikhail Shkolnikov. “Harmonic Dynamics of the Abelian Sandpile.” <i>Proceedings of the National Academy of Sciences</i>, vol. 116, no. 8, National Academy of Sciences, 2019, pp. 2821–30, doi:<a href=\"https://doi.org/10.1073/pnas.1812015116\">10.1073/pnas.1812015116</a>.","short":"M. Lang, M. Shkolnikov, Proceedings of the National Academy of Sciences 116 (2019) 2821–2830.","chicago":"Lang, Moritz, and Mikhail Shkolnikov. “Harmonic Dynamics of the Abelian Sandpile.” <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences, 2019. <a href=\"https://doi.org/10.1073/pnas.1812015116\">https://doi.org/10.1073/pnas.1812015116</a>.","ieee":"M. Lang and M. Shkolnikov, “Harmonic dynamics of the Abelian sandpile,” <i>Proceedings of the National Academy of Sciences</i>, vol. 116, no. 8. National Academy of Sciences, pp. 2821–2830, 2019.","apa":"Lang, M., &#38; Shkolnikov, M. (2019). Harmonic dynamics of the Abelian sandpile. <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1812015116\">https://doi.org/10.1073/pnas.1812015116</a>","ama":"Lang M, Shkolnikov M. Harmonic dynamics of the Abelian sandpile. <i>Proceedings of the National Academy of Sciences</i>. 2019;116(8):2821-2830. doi:<a href=\"https://doi.org/10.1073/pnas.1812015116\">10.1073/pnas.1812015116</a>"},"volume":116,"acknowledgement":"M.L. is grateful to the members of the C Guet and G Tkacik groups for valuable comments and support. M.S. is grateful to Nikita Kalinin for inspiring communications.\r\n","title":"Harmonic dynamics of the Abelian sandpile","intvolume":"       116","publication_status":"published","date_created":"2018-12-11T11:45:08Z","article_processing_charge":"No","department":[{"_id":"CaGu"},{"_id":"GaTk"},{"_id":"TaHa"}],"author":[{"last_name":"Lang","first_name":"Moritz","full_name":"Lang, Moritz","id":"29E0800A-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Shkolnikov, Mikhail","orcid":"0000-0002-4310-178X","last_name":"Shkolnikov","first_name":"Mikhail","id":"35084A62-F248-11E8-B48F-1D18A9856A87"}],"issue":"8","_id":"196","pmid":1,"scopus_import":"1","article_type":"original","publisher":"National Academy of Sciences","page":"2821-2830","quality_controlled":"1","oa":1,"publication_identifier":{"eissn":["1091-6490"]},"date_published":"2019-02-19T00:00:00Z","type":"journal_article","related_material":{"link":[{"url":"https://ist.ac.at/en/news/famous-sandpile-model-shown-to-move-like-a-traveling-sand-dune/","description":"News on IST Webpage","relation":"press_release"}]},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","status":"public","main_file_link":[{"url":"https://doi.org/10.1073/pnas.1812015116","open_access":"1"}],"month":"02","oa_version":"Published Version","publication":"Proceedings of the National Academy of Sciences","language":[{"iso":"eng"}]},{"language":[{"iso":"eng"}],"project":[{"name":"Tracing Evolution of Auxin Transport and Polarity in Plants","grant_number":"742985","_id":"261099A6-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"oa_version":"Published Version","acknowledged_ssus":[{"_id":"Bio"}],"article_number":"222","month":"06","has_accepted_license":"1","publication":"Biomolecules","file":[{"date_created":"2019-07-08T15:46:32Z","file_size":1066773,"checksum":"1ce1bd36038fe5381057a1bcc6760083","date_updated":"2020-07-14T12:47:34Z","file_name":"biomolecules-2019-Matous.pdf","content_type":"application/pdf","relation":"main_file","access_level":"open_access","file_id":"6625","creator":"kschuh"}],"status":"public","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"type":"journal_article","date_published":"2019-06-07T00:00:00Z","publisher":"MDPI","ec_funded":1,"quality_controlled":"1","file_date_updated":"2020-07-14T12:47:34Z","date_created":"2019-07-07T21:59:21Z","department":[{"_id":"JiFr"}],"article_processing_charge":"No","publication_status":"published","intvolume":"         9","title":"PIN2 polarity establishment in arabidopsis in the absence of an intact cytoskeleton","scopus_import":"1","pmid":1,"_id":"6611","issue":"6","author":[{"last_name":"Glanc","first_name":"Matous","full_name":"Glanc, Matous","orcid":"0000-0003-0619-7783","id":"1AE1EA24-02D0-11E9-9BAA-DAF4881429F2"},{"id":"43905548-F248-11E8-B48F-1D18A9856A87","full_name":"Fendrych, Matyas","orcid":"0000-0002-9767-8699","last_name":"Fendrych","first_name":"Matyas"},{"last_name":"Friml","first_name":"Jiří","full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87"}],"volume":9,"ddc":["580"],"day":"07","doi":"10.3390/biom9060222","abstract":[{"lang":"eng","text":"Cell polarity is crucial for the coordinated development of all multicellular organisms. In plants, this is exemplified by the PIN-FORMED (PIN) efflux carriers of the phytohormone auxin: The polar subcellular localization of the PINs is instructive to the directional intercellular auxin transport, and thus to a plethora of auxin-regulated growth and developmental processes. Despite its importance, the regulation of PIN polar subcellular localization remains poorly understood. Here, we have employed advanced live-cell imaging techniques to study the roles of microtubules and actin microfilaments in the establishment of apical polar localization of PIN2 in the epidermis of the Arabidopsis root meristem. We report that apical PIN2 polarity requires neither intact actin microfilaments nor microtubules, suggesting that the primary spatial cue for polar PIN distribution is likely independent of cytoskeleton-guided endomembrane trafficking."}],"year":"2019","citation":{"ista":"Glanc M, Fendrych M, Friml J. 2019. PIN2 polarity establishment in arabidopsis in the absence of an intact cytoskeleton. Biomolecules. 9(6), 222.","short":"M. Glanc, M. Fendrych, J. Friml, Biomolecules 9 (2019).","mla":"Glanc, Matous, et al. “PIN2 Polarity Establishment in Arabidopsis in the Absence of an Intact Cytoskeleton.” <i>Biomolecules</i>, vol. 9, no. 6, 222, MDPI, 2019, doi:<a href=\"https://doi.org/10.3390/biom9060222\">10.3390/biom9060222</a>.","chicago":"Glanc, Matous, Matyas Fendrych, and Jiří Friml. “PIN2 Polarity Establishment in Arabidopsis in the Absence of an Intact Cytoskeleton.” <i>Biomolecules</i>. MDPI, 2019. <a href=\"https://doi.org/10.3390/biom9060222\">https://doi.org/10.3390/biom9060222</a>.","ieee":"M. Glanc, M. Fendrych, and J. Friml, “PIN2 polarity establishment in arabidopsis in the absence of an intact cytoskeleton,” <i>Biomolecules</i>, vol. 9, no. 6. MDPI, 2019.","apa":"Glanc, M., Fendrych, M., &#38; Friml, J. (2019). PIN2 polarity establishment in arabidopsis in the absence of an intact cytoskeleton. <i>Biomolecules</i>. MDPI. <a href=\"https://doi.org/10.3390/biom9060222\">https://doi.org/10.3390/biom9060222</a>","ama":"Glanc M, Fendrych M, Friml J. PIN2 polarity establishment in arabidopsis in the absence of an intact cytoskeleton. <i>Biomolecules</i>. 2019;9(6). doi:<a href=\"https://doi.org/10.3390/biom9060222\">10.3390/biom9060222</a>"},"date_updated":"2023-08-28T12:30:24Z","external_id":{"pmid":["31181636"],"isi":["000475301500018"]},"isi":1},{"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"date_published":"2019-11-01T00:00:00Z","type":"journal_article","publication_identifier":{"eissn":["1432-0673"],"issn":["0003-9527"]},"oa":1,"file":[{"creator":"kschuh","file_id":"6626","access_level":"open_access","relation":"main_file","file_name":"Springer_2019_Fischer.pdf","content_type":"application/pdf","date_updated":"2020-07-14T12:47:34Z","file_size":1377659,"checksum":"4cff75fa6addb0770991ad9c474ab404","date_created":"2019-07-08T15:56:47Z"}],"status":"public","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication":"Archive for Rational Mechanics and Analysis","has_accepted_license":"1","oa_version":"Published Version","project":[{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"month":"11","language":[{"iso":"eng"}],"date_updated":"2023-08-28T12:31:21Z","year":"2019","citation":{"ieee":"J. L. Fischer, “The choice of representative volumes in the approximation of effective properties of random materials,” <i>Archive for Rational Mechanics and Analysis</i>, vol. 234, no. 2. Springer, pp. 635–726, 2019.","chicago":"Fischer, Julian L. “The Choice of Representative Volumes in the Approximation of Effective Properties of Random Materials.” <i>Archive for Rational Mechanics and Analysis</i>. Springer, 2019. <a href=\"https://doi.org/10.1007/s00205-019-01400-w\">https://doi.org/10.1007/s00205-019-01400-w</a>.","ama":"Fischer JL. The choice of representative volumes in the approximation of effective properties of random materials. <i>Archive for Rational Mechanics and Analysis</i>. 2019;234(2):635–726. doi:<a href=\"https://doi.org/10.1007/s00205-019-01400-w\">10.1007/s00205-019-01400-w</a>","apa":"Fischer, J. L. (2019). The choice of representative volumes in the approximation of effective properties of random materials. <i>Archive for Rational Mechanics and Analysis</i>. Springer. <a href=\"https://doi.org/10.1007/s00205-019-01400-w\">https://doi.org/10.1007/s00205-019-01400-w</a>","ista":"Fischer JL. 2019. The choice of representative volumes in the approximation of effective properties of random materials. Archive for Rational Mechanics and Analysis. 234(2), 635–726.","short":"J.L. Fischer, Archive for Rational Mechanics and Analysis 234 (2019) 635–726.","mla":"Fischer, Julian L. “The Choice of Representative Volumes in the Approximation of Effective Properties of Random Materials.” <i>Archive for Rational Mechanics and Analysis</i>, vol. 234, no. 2, Springer, 2019, pp. 635–726, doi:<a href=\"https://doi.org/10.1007/s00205-019-01400-w\">10.1007/s00205-019-01400-w</a>."},"isi":1,"external_id":{"arxiv":["1807.00834"],"isi":["000482386000006"]},"arxiv":1,"doi":"10.1007/s00205-019-01400-w","day":"01","abstract":[{"text":"The effective large-scale properties of materials with random heterogeneities on a small scale are typically determined by the method of representative volumes: a sample of the random material is chosen—the representative volume—and its effective properties are computed by the cell formula. Intuitively, for a fixed sample size it should be possible to increase the accuracy of the method by choosing a material sample which captures the statistical properties of the material particularly well; for example, for a composite material consisting of two constituents, one would select a representative volume in which the volume fraction of the constituents matches closely with their volume fraction in the overall material. Inspired by similar attempts in materials science, Le Bris, Legoll and Minvielle have designed a selection approach for representative volumes which performs remarkably well in numerical examples of linear materials with moderate contrast. In the present work, we provide a rigorous analysis of this selection approach for representative volumes in the context of stochastic homogenization of linear elliptic equations. In particular, we prove that the method essentially never performs worse than a random selection of the material sample and may perform much better if the selection criterion for the material samples is chosen suitably.","lang":"eng"}],"volume":234,"ddc":["500"],"_id":"6617","scopus_import":"1","author":[{"orcid":"0000-0002-0479-558X","full_name":"Fischer, Julian L","first_name":"Julian L","last_name":"Fischer","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87"}],"issue":"2","publication_status":"published","department":[{"_id":"JuFi"}],"article_processing_charge":"Yes (via OA deal)","date_created":"2019-07-07T21:59:23Z","title":"The choice of representative volumes in the approximation of effective properties of random materials","intvolume":"       234","page":"635–726","quality_controlled":"1","file_date_updated":"2020-07-14T12:47:34Z","publisher":"Springer","article_type":"original"},{"publication":"Science China Mathematics","month":"12","oa_version":"Preprint","language":[{"iso":"eng"}],"type":"journal_article","date_published":"2019-12-01T00:00:00Z","oa":1,"publication_identifier":{"issn":["16747283"]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","status":"public","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1709.09476"}],"issue":"12","author":[{"first_name":"Régis","last_name":"De La Bretèche","full_name":"De La Bretèche, Régis"},{"id":"44DDECBC-F248-11E8-B48F-1D18A9856A87","first_name":"Kevin N","last_name":"Destagnol","full_name":"Destagnol, Kevin N"},{"first_name":"Jianya","last_name":"Liu","full_name":"Liu, Jianya"},{"full_name":"Wu, Jie","first_name":"Jie","last_name":"Wu"},{"full_name":"Zhao, Yongqiang","first_name":"Yongqiang","last_name":"Zhao"}],"scopus_import":"1","_id":"6620","intvolume":"        62","title":"On a certain non-split cubic surface","article_processing_charge":"No","date_created":"2019-07-07T21:59:25Z","department":[{"_id":"TiBr"}],"publication_status":"published","quality_controlled":"1","page":"2435–2446","article_type":"original","publisher":"Springer","external_id":{"isi":["000509102200001"],"arxiv":["1709.09476"]},"isi":1,"year":"2019","citation":{"mla":"De La Bretèche, Régis, et al. “On a Certain Non-Split Cubic Surface.” <i>Science China Mathematics</i>, vol. 62, no. 12, Springer, 2019, pp. 2435–2446, doi:<a href=\"https://doi.org/10.1007/s11425-018-9543-8\">10.1007/s11425-018-9543-8</a>.","short":"R. De La Bretèche, K.N. Destagnol, J. Liu, J. Wu, Y. Zhao, Science China Mathematics 62 (2019) 2435–2446.","ista":"De La Bretèche R, Destagnol KN, Liu J, Wu J, Zhao Y. 2019. On a certain non-split cubic surface. Science China Mathematics. 62(12), 2435–2446.","ama":"De La Bretèche R, Destagnol KN, Liu J, Wu J, Zhao Y. On a certain non-split cubic surface. <i>Science China Mathematics</i>. 2019;62(12):2435–2446. doi:<a href=\"https://doi.org/10.1007/s11425-018-9543-8\">10.1007/s11425-018-9543-8</a>","apa":"De La Bretèche, R., Destagnol, K. N., Liu, J., Wu, J., &#38; Zhao, Y. (2019). On a certain non-split cubic surface. <i>Science China Mathematics</i>. Springer. <a href=\"https://doi.org/10.1007/s11425-018-9543-8\">https://doi.org/10.1007/s11425-018-9543-8</a>","chicago":"De La Bretèche, Régis, Kevin N Destagnol, Jianya Liu, Jie Wu, and Yongqiang Zhao. “On a Certain Non-Split Cubic Surface.” <i>Science China Mathematics</i>. Springer, 2019. <a href=\"https://doi.org/10.1007/s11425-018-9543-8\">https://doi.org/10.1007/s11425-018-9543-8</a>.","ieee":"R. De La Bretèche, K. N. Destagnol, J. Liu, J. Wu, and Y. Zhao, “On a certain non-split cubic surface,” <i>Science China Mathematics</i>, vol. 62, no. 12. Springer, pp. 2435–2446, 2019."},"date_updated":"2023-08-28T12:32:20Z","abstract":[{"lang":"eng","text":"This paper establishes an asymptotic formula with a power-saving error term for the number of rational points of bounded height on the singular cubic surface of ℙ3ℚ given by the following equation 𝑥0(𝑥21+𝑥22)−𝑥33=0 in agreement with the Manin-Peyre conjectures.\r\n"}],"day":"01","doi":"10.1007/s11425-018-9543-8","arxiv":1,"volume":62},{"type":"journal_article","date_published":"2019-06-25T00:00:00Z","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","main_file_link":[{"url":"https://doi.org/10.1073/pnas.1905555116","open_access":"1"}],"publication":"Proceedings of the National Academy of Sciences of the United States of America","month":"06","oa_version":"Published Version","language":[{"iso":"eng"}],"external_id":{"isi":["000472719100010"],"pmid":["31213531"]},"isi":1,"year":"2019","citation":{"apa":"Wright, A. E., Darolti, I., Bloch, N. I., Oostra, V., Sandkam, B. A., Buechel, S. D., … Mank, J. E. (2019). On the power to detect rare recombination events. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. Proceedings of the National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1905555116\">https://doi.org/10.1073/pnas.1905555116</a>","ama":"Wright AE, Darolti I, Bloch NI, et al. On the power to detect rare recombination events. <i>Proceedings of the National Academy of Sciences of the United States of America</i>. 2019;116(26):12607-12608. doi:<a href=\"https://doi.org/10.1073/pnas.1905555116\">10.1073/pnas.1905555116</a>","chicago":"Wright, Alison E., Iulia Darolti, Natasha I. Bloch, Vicencio Oostra, Benjamin A. Sandkam, Séverine D. Buechel, Niclas Kolm, Felix Breden, Beatriz Vicoso, and Judith E. Mank. “On the Power to Detect Rare Recombination Events.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>. Proceedings of the National Academy of Sciences, 2019. <a href=\"https://doi.org/10.1073/pnas.1905555116\">https://doi.org/10.1073/pnas.1905555116</a>.","ieee":"A. E. Wright <i>et al.</i>, “On the power to detect rare recombination events,” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 116, no. 26. Proceedings of the National Academy of Sciences, pp. 12607–12608, 2019.","mla":"Wright, Alison E., et al. “On the Power to Detect Rare Recombination Events.” <i>Proceedings of the National Academy of Sciences of the United States of America</i>, vol. 116, no. 26, Proceedings of the National Academy of Sciences, 2019, pp. 12607–08, doi:<a href=\"https://doi.org/10.1073/pnas.1905555116\">10.1073/pnas.1905555116</a>.","short":"A.E. Wright, I. Darolti, N.I. Bloch, V. Oostra, B.A. Sandkam, S.D. Buechel, N. Kolm, F. Breden, B. Vicoso, J.E. Mank, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 12607–12608.","ista":"Wright AE, Darolti I, Bloch NI, Oostra V, Sandkam BA, Buechel SD, Kolm N, Breden F, Vicoso B, Mank JE. 2019. On the power to detect rare recombination events. Proceedings of the National Academy of Sciences of the United States of America. 116(26), 12607–12608."},"date_updated":"2023-10-17T12:44:15Z","abstract":[{"lang":"eng","text":"We read with great interest the recent work in PNAS by Bergero et al. (1) describing differences in male and female recombination patterns on the guppy (Poecilia reticulata) sex chromosome. We fully agree that recombination in males is largely confined to the ends of the sex chromosome. Bergero et al. interpret these results to suggest that our previous findings of population-level variation in the degree of sex chromosome differentiation in this species (2) are incorrect. However, we suggest that their results are entirely consistent with our previous report, and that their interpretation presents a false controversy."}],"day":"25","doi":"10.1073/pnas.1905555116","volume":116,"issue":"26","author":[{"full_name":"Wright, Alison E.","last_name":"Wright","first_name":"Alison E."},{"first_name":"Iulia","last_name":"Darolti","full_name":"Darolti, Iulia"},{"full_name":"Bloch, Natasha I.","last_name":"Bloch","first_name":"Natasha I."},{"full_name":"Oostra, Vicencio","first_name":"Vicencio","last_name":"Oostra"},{"last_name":"Sandkam","first_name":"Benjamin A.","full_name":"Sandkam, Benjamin A."},{"first_name":"Séverine D.","last_name":"Buechel","full_name":"Buechel, Séverine D."},{"full_name":"Kolm, Niclas","last_name":"Kolm","first_name":"Niclas"},{"last_name":"Breden","first_name":"Felix","full_name":"Breden, Felix"},{"id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","last_name":"Vicoso","first_name":"Beatriz","full_name":"Vicoso, Beatriz","orcid":"0000-0002-4579-8306"},{"first_name":"Judith E.","last_name":"Mank","full_name":"Mank, Judith E."}],"scopus_import":"1","pmid":1,"_id":"6621","intvolume":"       116","title":"On the power to detect rare recombination events","article_processing_charge":"No","department":[{"_id":"BeVi"}],"date_created":"2019-07-07T21:59:25Z","publication_status":"published","quality_controlled":"1","page":"12607-12608","article_type":"letter_note","publisher":"Proceedings of the National Academy of Sciences"},{"ddc":["580"],"volume":20,"abstract":[{"lang":"eng","text":"Cortical microtubule arrays in elongating epidermal cells in both the root and stem of plants have the propensity of dynamic reorientations that are correlated with the activation or inhibition of growth. Factors regulating plant growth, among them the hormone auxin, have been recognized as regulators of microtubule array orientations. Some previous work in the field has aimed at elucidating the causal relationship between cell growth, the signaling of auxin or other growth-regulating factors, and microtubule array reorientations, with various conclusions. Here, we revisit this problem of causality with a comprehensive set of experiments in Arabidopsis thaliana, using the now available pharmacological and genetic tools. We use isolated, auxin-depleted hypocotyls, an experimental system allowing for full control of both growth and auxin signaling. We demonstrate that reorientation of microtubules is not directly triggered by an auxin signal during growth activation. Instead, reorientation is triggered by the activation of the growth process itself and is auxin-independent in its nature. We discuss these findings in the context of previous relevant work, including that on the mechanical regulation of microtubule array orientation."}],"doi":"10.3390/ijms20133337","day":"07","isi":1,"external_id":{"isi":["000477041100221"],"pmid":["31284661"]},"date_updated":"2025-05-07T11:12:33Z","citation":{"ista":"Adamowski M, Li L, Friml J. 2019. Reorientation of cortical microtubule arrays in the hypocotyl of arabidopsis thaliana is induced by the cell growth process and independent of auxin signaling. International Journal of Molecular Sciences. 20(13), 3337.","short":"M. Adamowski, L. Li, J. Friml, International Journal of Molecular Sciences 20 (2019).","mla":"Adamowski, Maciek, et al. “Reorientation of Cortical Microtubule Arrays in the Hypocotyl of Arabidopsis Thaliana Is Induced by the Cell Growth Process and Independent of Auxin Signaling.” <i>International Journal of Molecular Sciences</i>, vol. 20, no. 13, 3337, MDPI, 2019, doi:<a href=\"https://doi.org/10.3390/ijms20133337\">10.3390/ijms20133337</a>.","chicago":"Adamowski, Maciek, Lanxin Li, and Jiří Friml. “Reorientation of Cortical Microtubule Arrays in the Hypocotyl of Arabidopsis Thaliana Is Induced by the Cell Growth Process and Independent of Auxin Signaling.” <i>International Journal of Molecular Sciences</i>. MDPI, 2019. <a href=\"https://doi.org/10.3390/ijms20133337\">https://doi.org/10.3390/ijms20133337</a>.","ieee":"M. Adamowski, L. Li, and J. Friml, “Reorientation of cortical microtubule arrays in the hypocotyl of arabidopsis thaliana is induced by the cell growth process and independent of auxin signaling,” <i>International Journal of Molecular Sciences</i>, vol. 20, no. 13. MDPI, 2019.","apa":"Adamowski, M., Li, L., &#38; Friml, J. (2019). Reorientation of cortical microtubule arrays in the hypocotyl of arabidopsis thaliana is induced by the cell growth process and independent of auxin signaling. <i>International Journal of Molecular Sciences</i>. MDPI. <a href=\"https://doi.org/10.3390/ijms20133337\">https://doi.org/10.3390/ijms20133337</a>","ama":"Adamowski M, Li L, Friml J. Reorientation of cortical microtubule arrays in the hypocotyl of arabidopsis thaliana is induced by the cell growth process and independent of auxin signaling. <i>International Journal of Molecular Sciences</i>. 2019;20(13). doi:<a href=\"https://doi.org/10.3390/ijms20133337\">10.3390/ijms20133337</a>"},"year":"2019","article_type":"original","publisher":"MDPI","file_date_updated":"2020-07-14T12:47:34Z","ec_funded":1,"quality_controlled":"1","title":"Reorientation of cortical microtubule arrays in the hypocotyl of arabidopsis thaliana is induced by the cell growth process and independent of auxin signaling","intvolume":"        20","publication_status":"published","date_created":"2019-07-11T12:00:32Z","department":[{"_id":"JiFr"}],"article_processing_charge":"Yes","author":[{"first_name":"Maciek","last_name":"Adamowski","orcid":"0000-0001-6463-5257","full_name":"Adamowski, Maciek","id":"45F536D2-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0002-5607-272X","full_name":"Li, Lanxin","first_name":"Lanxin","last_name":"Li","id":"367EF8FA-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0002-8302-7596","full_name":"Friml, Jiří","first_name":"Jiří","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87"}],"issue":"13","_id":"6627","pmid":1,"scopus_import":"1","related_material":{"record":[{"id":"10083","relation":"dissertation_contains","status":"public"}]},"status":"public","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","file":[{"creator":"dernst","file_id":"6645","relation":"main_file","access_level":"open_access","content_type":"application/pdf","file_name":"2019_JournalMolecularScience_Adamowski.pdf","date_updated":"2020-07-14T12:47:34Z","file_size":3330291,"checksum":"dd9d1cbb933a72ceb666c9667890ac51","date_created":"2019-07-17T06:17:15Z"}],"oa":1,"publication_identifier":{"eissn":["1422-0067"]},"date_published":"2019-07-07T00:00:00Z","type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"language":[{"iso":"eng"}],"month":"07","article_number":"3337","oa_version":"Published Version","project":[{"name":"Polarity and subcellular dynamics in plants","grant_number":"282300","call_identifier":"FP7","_id":"25716A02-B435-11E9-9278-68D0E5697425"},{"call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","name":"International IST Doctoral Program","grant_number":"665385"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"publication":"International Journal of Molecular Sciences","has_accepted_license":"1"},{"conference":{"end_date":"2019-08-10","location":"Edmonton, Canada","start_date":"2019-08-08","name":"CCCG: Canadian Conference in Computational Geometry"},"quality_controlled":"1","ec_funded":1,"page":"275-279","file_date_updated":"2020-07-14T12:47:34Z","language":[{"iso":"eng"}],"project":[{"name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"date_created":"2019-07-12T08:34:57Z","department":[{"_id":"HeEd"}],"publication_status":"published","oa_version":"Submitted Version","month":"08","title":"The extrinsic nature of the Hausdorff distance of optimal triangulations of manifolds","scopus_import":1,"has_accepted_license":"1","publication":"The 31st Canadian Conference in Computational Geometry","_id":"6628","author":[{"full_name":"Vegter, Gert","first_name":"Gert","last_name":"Vegter"},{"id":"307CFBC8-F248-11E8-B48F-1D18A9856A87","full_name":"Wintraecken, Mathijs","orcid":"0000-0002-7472-2220","last_name":"Wintraecken","first_name":"Mathijs"}],"file":[{"creator":"mwintrae","file_id":"6629","access_level":"open_access","relation":"main_file","file_name":"IntrinsicExtrinsicCCCG2019.pdf","content_type":"application/pdf","date_updated":"2020-07-14T12:47:34Z","file_size":321176,"checksum":"ceabd152cfa55170d57763f9c6c60a53","date_created":"2019-07-12T08:32:46Z"}],"status":"public","ddc":["004"],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","day":"01","oa":1,"abstract":[{"lang":"eng","text":"Fejes Tóth [5] and Schneider [9] studied approximations of smooth convex hypersurfaces in Euclidean space by piecewise  flat  triangular  meshes  with  a  given  number of  vertices  on  the  hypersurface  that  are  optimal  with respect  to  Hausdorff  distance.   They  proved  that  this Hausdorff distance decreases inversely proportional with m 2/(d−1),  where m is  the  number  of  vertices  and d is the  dimension  of  Euclidean  space.   Moreover  the  pro-portionality constant can be expressed in terms of the Gaussian curvature, an intrinsic quantity.  In this short note, we prove the extrinsic nature of this constant for manifolds of sufficiently high codimension.  We do so by constructing an family of isometric embeddings of the flat torus in Euclidean space."}],"year":"2019","citation":{"ista":"Vegter G, Wintraecken M. 2019. The extrinsic nature of the Hausdorff distance of optimal triangulations of manifolds. The 31st Canadian Conference in Computational Geometry. CCCG: Canadian Conference in Computational Geometry, 275–279.","mla":"Vegter, Gert, and Mathijs Wintraecken. “The Extrinsic Nature of the Hausdorff Distance of Optimal Triangulations of Manifolds.” <i>The 31st Canadian Conference in Computational Geometry</i>, 2019, pp. 275–79.","short":"G. Vegter, M. Wintraecken, in:, The 31st Canadian Conference in Computational Geometry, 2019, pp. 275–279.","ieee":"G. Vegter and M. Wintraecken, “The extrinsic nature of the Hausdorff distance of optimal triangulations of manifolds,” in <i>The 31st Canadian Conference in Computational Geometry</i>, Edmonton, Canada, 2019, pp. 275–279.","chicago":"Vegter, Gert, and Mathijs Wintraecken. “The Extrinsic Nature of the Hausdorff Distance of Optimal Triangulations of Manifolds.” In <i>The 31st Canadian Conference in Computational Geometry</i>, 275–79, 2019.","apa":"Vegter, G., &#38; Wintraecken, M. (2019). The extrinsic nature of the Hausdorff distance of optimal triangulations of manifolds. In <i>The 31st Canadian Conference in Computational Geometry</i> (pp. 275–279). Edmonton, Canada.","ama":"Vegter G, Wintraecken M. The extrinsic nature of the Hausdorff distance of optimal triangulations of manifolds. In: <i>The 31st Canadian Conference in Computational Geometry</i>. ; 2019:275-279."},"date_updated":"2021-01-12T08:08:16Z","type":"conference","date_published":"2019-08-01T00:00:00Z"}]