[{"volume":26,"extern":"1","doi":"10.1175/jcli-d-12-00655.1","day":"15","abstract":[{"lang":"eng","text":"In this study the response of tropical precipitation extremes to warming in organized convection is examined using a cloud-resolving model. Vertical shear is imposed to organize the convection into squall lines. Earlier studies show that in disorganized convection, the fractional increase of precipitation extremes is similar to that of surface water vapor, which is substantially smaller than the increase in column water vapor. It has been suggested that organized convection could lead to stronger amplifications.\r\nRegardless of the strength of the shear, amplifications of precipitation extremes in the cloud-resolving simulations are comparable to those of surface water vapor and are substantially less than increases in column water vapor. The results without shear and with critical shear, for which the squall lines are perpendicular to the shear, are surprisingly similar with a fractional rate of increase of precipitation extremes slightly smaller than that of surface water vapor. Interestingly, the dependence on shear is nonmonotonic, and stronger supercritical shear yields larger rates, close to or slightly larger than surface humidity.\r\nA scaling is used to evaluate the thermodynamic and dynamic contributions to precipitation extreme changes. To first order, they are dominated by the thermodynamic component, which has the same magnitude for all shears, close to the change in surface water vapor. The dynamic contribution plays a secondary role and tends to weaken extremes without shear and with critical shear, while it strengthens extremes with supercritical shear. These different dynamic contributions for different shears are due to different responses of convective mass fluxes in individual updrafts to warming."}],"date_updated":"2022-01-24T13:46:41Z","citation":{"ieee":"C. J. Muller, “Impact of convective organization on the response of tropical precipitation extremes to warming,” <i>Journal of Climate</i>, vol. 26, no. 14. American Meteorological Society, pp. 5028–5043, 2013.","chicago":"Muller, Caroline J. “Impact of Convective Organization on the Response of Tropical Precipitation Extremes to Warming.” <i>Journal of Climate</i>. American Meteorological Society, 2013. <a href=\"https://doi.org/10.1175/jcli-d-12-00655.1\">https://doi.org/10.1175/jcli-d-12-00655.1</a>.","ama":"Muller CJ. Impact of convective organization on the response of tropical precipitation extremes to warming. <i>Journal of Climate</i>. 2013;26(14):5028-5043. doi:<a href=\"https://doi.org/10.1175/jcli-d-12-00655.1\">10.1175/jcli-d-12-00655.1</a>","apa":"Muller, C. J. (2013). Impact of convective organization on the response of tropical precipitation extremes to warming. <i>Journal of Climate</i>. American Meteorological Society. <a href=\"https://doi.org/10.1175/jcli-d-12-00655.1\">https://doi.org/10.1175/jcli-d-12-00655.1</a>","ista":"Muller CJ. 2013. Impact of convective organization on the response of tropical precipitation extremes to warming. Journal of Climate. 26(14), 5028–5043.","mla":"Muller, Caroline J. “Impact of Convective Organization on the Response of Tropical Precipitation Extremes to Warming.” <i>Journal of Climate</i>, vol. 26, no. 14, American Meteorological Society, 2013, pp. 5028–43, doi:<a href=\"https://doi.org/10.1175/jcli-d-12-00655.1\">10.1175/jcli-d-12-00655.1</a>.","short":"C.J. Muller, Journal of Climate 26 (2013) 5028–5043."},"year":"2013","publisher":"American Meteorological Society","article_type":"original","page":"5028-5043","quality_controlled":"1","publication_status":"published","date_created":"2021-02-15T15:26:39Z","article_processing_charge":"No","title":"Impact of convective organization on the response of tropical precipitation extremes to warming","intvolume":"        26","_id":"9154","author":[{"orcid":"0000-0001-5836-5350","full_name":"Muller, Caroline J","first_name":"Caroline J","last_name":"Muller","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b"}],"issue":"14","main_file_link":[{"url":"https://doi.org/10.1175/JCLI-D-12-00655.1","open_access":"1"}],"status":"public","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","publication_identifier":{"issn":["0894-8755","1520-0442"]},"oa":1,"date_published":"2013-07-15T00:00:00Z","type":"journal_article","language":[{"iso":"eng"}],"keyword":["Atmospheric Science"],"oa_version":"Published Version","month":"07","publication":"Journal of Climate"},{"article_type":"original","publisher":"American Chemical Society","quality_controlled":"1","page":"15978-15981","intvolume":"       135","title":"Photoactivated colloidal dockers for cargo transportation","article_processing_charge":"No","date_created":"2021-02-18T14:31:26Z","publication_status":"published","issue":"43","author":[{"id":"8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d","full_name":"Palacci, Jérémie A","orcid":"0000-0002-7253-9465","last_name":"Palacci","first_name":"Jérémie A"},{"last_name":"Sacanna","first_name":"Stefano","full_name":"Sacanna, Stefano"},{"full_name":"Vatchinsky, Adrian","last_name":"Vatchinsky","first_name":"Adrian"},{"last_name":"Chaikin","first_name":"Paul M.","full_name":"Chaikin, Paul M."},{"last_name":"Pine","first_name":"David J.","full_name":"Pine, David J."}],"scopus_import":"1","pmid":1,"_id":"9167","extern":"1","volume":135,"abstract":[{"lang":"eng","text":"We introduce a self-propelled colloidal hematite docker that can be steered to a small particle cargo many times its size, dock, transport the cargo to a remote location, and then release it. The self-propulsion and docking are reversible and activated by visible light. The docker can be steered either by a weak uniform magnetic field or by nanoscale tracks in a textured substrate. The light-activated motion and docking originate from osmotic/phoretic particle transport in a concentration gradient of fuel, hydrogen peroxide, induced by the photocatalytic activity of the hematite. The docking mechanism is versatile and can be applied to various materials and shapes. The hematite dockers are simple single-component particles and are synthesized in bulk quantities. This system opens up new possibilities for designing complex micrometer-size factories as well as new biomimetic systems."}],"day":"30","doi":"10.1021/ja406090s","arxiv":1,"external_id":{"arxiv":["1310.5724"],"pmid":["24131488"]},"year":"2013","citation":{"mla":"Palacci, Jérémie A., et al. “Photoactivated Colloidal Dockers for Cargo Transportation.” <i>Journal of the American Chemical Society</i>, vol. 135, no. 43, American Chemical Society, 2013, pp. 15978–81, doi:<a href=\"https://doi.org/10.1021/ja406090s\">10.1021/ja406090s</a>.","short":"J.A. Palacci, S. Sacanna, A. Vatchinsky, P.M. Chaikin, D.J. Pine, Journal of the American Chemical Society 135 (2013) 15978–15981.","ista":"Palacci JA, Sacanna S, Vatchinsky A, Chaikin PM, Pine DJ. 2013. Photoactivated colloidal dockers for cargo transportation. Journal of the American Chemical Society. 135(43), 15978–15981.","apa":"Palacci, J. A., Sacanna, S., Vatchinsky, A., Chaikin, P. M., &#38; Pine, D. J. (2013). Photoactivated colloidal dockers for cargo transportation. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/ja406090s\">https://doi.org/10.1021/ja406090s</a>","ama":"Palacci JA, Sacanna S, Vatchinsky A, Chaikin PM, Pine DJ. Photoactivated colloidal dockers for cargo transportation. <i>Journal of the American Chemical Society</i>. 2013;135(43):15978-15981. doi:<a href=\"https://doi.org/10.1021/ja406090s\">10.1021/ja406090s</a>","ieee":"J. A. Palacci, S. Sacanna, A. Vatchinsky, P. M. Chaikin, and D. J. Pine, “Photoactivated colloidal dockers for cargo transportation,” <i>Journal of the American Chemical Society</i>, vol. 135, no. 43. American Chemical Society, pp. 15978–15981, 2013.","chicago":"Palacci, Jérémie A, Stefano Sacanna, Adrian Vatchinsky, Paul M. Chaikin, and David J. Pine. “Photoactivated Colloidal Dockers for Cargo Transportation.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2013. <a href=\"https://doi.org/10.1021/ja406090s\">https://doi.org/10.1021/ja406090s</a>."},"date_updated":"2021-02-22T10:10:41Z","keyword":["Colloid and Surface Chemistry","Biochemistry","General Chemistry","Catalysis"],"language":[{"iso":"eng"}],"month":"10","oa_version":"Preprint","publication":"Journal of the American Chemical Society","status":"public","user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1310.5724"}],"oa":1,"publication_identifier":{"eissn":["15205126"],"issn":["00027863"]},"type":"journal_article","date_published":"2013-10-30T00:00:00Z"},{"intvolume":"       110","title":"Alignment of cellular motility forces with tissue flow as a mechanism for efficient wound healing","month":"02","date_created":"2018-12-11T11:49:12Z","article_processing_charge":"No","oa_version":"None","publication_status":"published","issue":"7","author":[{"first_name":"Markus","last_name":"Basan","full_name":"Basan, Markus"},{"last_name":"Elgeti","first_name":"Jens","full_name":"Elgeti, Jens"},{"id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6005-1561","full_name":"Hannezo, Edouard B","first_name":"Edouard B","last_name":"Hannezo"},{"full_name":"Rappel, Wouter","first_name":"Wouter","last_name":"Rappel"},{"first_name":"Herbert","last_name":"Levine","full_name":"Levine, Herbert"}],"_id":"921","publication":"PNAS","publisher":"National Academy of Sciences","language":[{"iso":"eng"}],"page":"2452 - 2459","publist_id":"6518","abstract":[{"text":"Recent experiments have shown that spreading epithelial sheets exhibit a long-range coordination of motility forces that leads to a buildup of tension in the tissue, which may enhance cell division and the speed of wound healing. Furthermore, the edges of these epithelial sheets commonly show finger-like protrusions whereas the bulk often displays spontaneous swirls of motile cells. To explain these experimental observations, we propose a simple flocking-type mechanism, in which cells tend to align their motility forceswith their velocity. Implementing this idea in amechanical tissue simulation, the proposed model gives rise to efficient spreading and can explain the experimentally observed long-range alignment of motility forces in highly disordered patterns, as well as the buildup of tensile stress throughout the tissue. Our model also qualitatively reproduces the dependence of swirl size and swirl velocity on cell density reported in experiments and exhibits an undulation instability at the edge of the spreading tissue commonly observed in vivo. Finally, we study the dependence of colony spreading speed on important physical and biological parameters and derive simple scaling relations that show that coordination of motility forces leads to an improvement of the wound healing process for realistic tissue parameters.","lang":"eng"}],"day":"12","doi":"10.1073/pnas.1219937110","type":"journal_article","date_published":"2013-02-12T00:00:00Z","year":"2013","citation":{"short":"M. Basan, J. Elgeti, E.B. Hannezo, W. Rappel, H. Levine, PNAS 110 (2013) 2452–2459.","mla":"Basan, Markus, et al. “Alignment of Cellular Motility Forces with Tissue Flow as a Mechanism for Efficient Wound Healing.” <i>PNAS</i>, vol. 110, no. 7, National Academy of Sciences, 2013, pp. 2452–59, doi:<a href=\"https://doi.org/10.1073/pnas.1219937110\">10.1073/pnas.1219937110</a>.","ista":"Basan M, Elgeti J, Hannezo EB, Rappel W, Levine H. 2013. Alignment of cellular motility forces with tissue flow as a mechanism for efficient wound healing. PNAS. 110(7), 2452–2459.","ama":"Basan M, Elgeti J, Hannezo EB, Rappel W, Levine H. Alignment of cellular motility forces with tissue flow as a mechanism for efficient wound healing. <i>PNAS</i>. 2013;110(7):2452-2459. doi:<a href=\"https://doi.org/10.1073/pnas.1219937110\">10.1073/pnas.1219937110</a>","apa":"Basan, M., Elgeti, J., Hannezo, E. B., Rappel, W., &#38; Levine, H. (2013). Alignment of cellular motility forces with tissue flow as a mechanism for efficient wound healing. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1219937110\">https://doi.org/10.1073/pnas.1219937110</a>","ieee":"M. Basan, J. Elgeti, E. B. Hannezo, W. Rappel, and H. Levine, “Alignment of cellular motility forces with tissue flow as a mechanism for efficient wound healing,” <i>PNAS</i>, vol. 110, no. 7. National Academy of Sciences, pp. 2452–2459, 2013.","chicago":"Basan, Markus, Jens Elgeti, Edouard B Hannezo, Wouter Rappel, and Herbert Levine. “Alignment of Cellular Motility Forces with Tissue Flow as a Mechanism for Efficient Wound Healing.” <i>PNAS</i>. National Academy of Sciences, 2013. <a href=\"https://doi.org/10.1073/pnas.1219937110\">https://doi.org/10.1073/pnas.1219937110</a>."},"date_updated":"2021-01-12T08:21:55Z","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","volume":110,"acknowledgement":"This work was supported by National Science Foundation (NSF) Grant DMS-1068869 and by the NSF Center for Theoretical Biological Physics (Grant NSF PHY-0822283).\r\nWe acknowledge useful discussions with Eshel Ben-Jacob and Assaf Zaritsky. "},{"page":"193-205","quality_controlled":"1","publisher":"Elsevier","article_type":"original","_id":"9459","pmid":1,"scopus_import":"1","author":[{"last_name":"Zemach","first_name":"Assaf","full_name":"Zemach, Assaf"},{"full_name":"Kim, M. Yvonne","last_name":"Kim","first_name":"M. Yvonne"},{"full_name":"Hsieh, Ping-Hung","last_name":"Hsieh","first_name":"Ping-Hung"},{"full_name":"Coleman-Derr, Devin","last_name":"Coleman-Derr","first_name":"Devin"},{"full_name":"Eshed-Williams, Leor","last_name":"Eshed-Williams","first_name":"Leor"},{"first_name":"Ka","last_name":"Thao","full_name":"Thao, Ka"},{"last_name":"Harmer","first_name":"Stacey L.","full_name":"Harmer, Stacey L."},{"id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","last_name":"Zilberman","first_name":"Daniel","full_name":"Zilberman, Daniel","orcid":"0000-0002-0123-8649"}],"issue":"1","publication_status":"published","department":[{"_id":"DaZi"}],"date_created":"2021-06-04T12:23:28Z","article_processing_charge":"No","title":"The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin","intvolume":"       153","volume":153,"extern":"1","date_updated":"2021-12-14T08:25:35Z","year":"2013","citation":{"chicago":"Zemach, Assaf, M. Yvonne Kim, Ping-Hung Hsieh, Devin Coleman-Derr, Leor Eshed-Williams, Ka Thao, Stacey L. Harmer, and Daniel Zilberman. “The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin.” <i>Cell</i>. Elsevier, 2013. <a href=\"https://doi.org/10.1016/j.cell.2013.02.033\">https://doi.org/10.1016/j.cell.2013.02.033</a>.","ieee":"A. Zemach <i>et al.</i>, “The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin,” <i>Cell</i>, vol. 153, no. 1. Elsevier, pp. 193–205, 2013.","apa":"Zemach, A., Kim, M. Y., Hsieh, P.-H., Coleman-Derr, D., Eshed-Williams, L., Thao, K., … Zilberman, D. (2013). The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin. <i>Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cell.2013.02.033\">https://doi.org/10.1016/j.cell.2013.02.033</a>","ama":"Zemach A, Kim MY, Hsieh P-H, et al. The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin. <i>Cell</i>. 2013;153(1):193-205. doi:<a href=\"https://doi.org/10.1016/j.cell.2013.02.033\">10.1016/j.cell.2013.02.033</a>","ista":"Zemach A, Kim MY, Hsieh P-H, Coleman-Derr D, Eshed-Williams L, Thao K, Harmer SL, Zilberman D. 2013. The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin. Cell. 153(1), 193–205.","mla":"Zemach, Assaf, et al. “The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin.” <i>Cell</i>, vol. 153, no. 1, Elsevier, 2013, pp. 193–205, doi:<a href=\"https://doi.org/10.1016/j.cell.2013.02.033\">10.1016/j.cell.2013.02.033</a>.","short":"A. Zemach, M.Y. Kim, P.-H. Hsieh, D. Coleman-Derr, L. Eshed-Williams, K. Thao, S.L. Harmer, D. Zilberman, Cell 153 (2013) 193–205."},"external_id":{"pmid":["23540698"]},"doi":"10.1016/j.cell.2013.02.033","day":"28","abstract":[{"text":"Nucleosome remodelers of the DDM1/Lsh family are required for DNA methylation of transposable elements, but the reason for this is unknown. How DDM1 interacts with other methylation pathways, such as small-RNA-directed DNA methylation (RdDM), which is thought to mediate plant asymmetric methylation through DRM enzymes, is also unclear. Here, we show that most asymmetric methylation is facilitated by DDM1 and mediated by the methyltransferase CMT2 separately from RdDM. We find that heterochromatic sequences preferentially require DDM1 for DNA methylation and that this preference depends on linker histone H1. RdDM is instead inhibited by heterochromatin and absolutely requires the nucleosome remodeler DRD1. Together, DDM1 and RdDM mediate nearly all transposon methylation and collaborate to repress transposition and regulate the methylation and expression of genes. Our results indicate that DDM1 provides DNA methyltransferases access to H1-containing heterochromatin to allow stable silencing of transposable elements in cooperation with the RdDM pathway.","lang":"eng"}],"language":[{"iso":"eng"}],"publication":"Cell","oa_version":"Published Version","month":"03","main_file_link":[{"url":"https://doi.org/10.1016/j.cell.2013.02.033","open_access":"1"}],"status":"public","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","date_published":"2013-03-28T00:00:00Z","type":"journal_article","publication_identifier":{"eissn":["1097-4172"],"issn":["0092-8674"]},"oa":1},{"status":"public","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1073/pnas.1306164110"}],"oa":1,"publication_identifier":{"eissn":["1091-6490"],"issn":["0027-8424"]},"type":"journal_article","date_published":"2013-05-07T00:00:00Z","keyword":["Multidisciplinary"],"language":[{"iso":"eng"}],"month":"05","oa_version":"Published Version","publication":"Proceedings of the National Academy of Sciences","extern":"1","volume":110,"abstract":[{"lang":"eng","text":"Arabidopsis thaliana endosperm, a transient tissue that nourishes the embryo, exhibits extensive localized DNA demethylation on maternally inherited chromosomes. Demethylation mediates parent-of-origin–specific (imprinted) gene expression but is apparently unnecessary for the extensive accumulation of maternally biased small RNA (sRNA) molecules detected in seeds. Endosperm DNA in the distantly related monocots rice and maize is likewise locally hypomethylated, but whether this hypomethylation is generally parent-of-origin specific is unknown. Imprinted expression of sRNA also remains uninvestigated in monocot seeds. Here, we report high-coverage sequencing of the Kitaake rice cultivar that enabled us to show that localized hypomethylation in rice endosperm occurs solely on the maternal genome, preferring regions of high DNA accessibility. Maternally expressed imprinted genes are enriched for hypomethylation at putative promoter regions and transcriptional termini and paternally expressed genes at promoters and gene bodies, mirroring our recent results in A. thaliana. However, unlike in A. thaliana, rice endosperm sRNA populations are dominated by specific strong sRNA-producing loci, and imprinted 24-nt sRNAs are expressed from both parental genomes and correlate with hypomethylation. Overlaps between imprinted sRNA loci and imprinted genes expressed from opposite alleles suggest that sRNAs may regulate genomic imprinting. Whereas sRNAs in seedling tissues primarily originate from small class II (cut-and-paste) transposable elements, those in endosperm are more uniformly derived, including sequences from other transposon classes, as well as genic and intergenic regions. Our data indicate that the endosperm exhibits a unique pattern of sRNA expression and suggest that localized hypomethylation of maternal endosperm DNA is conserved in flowering plants."}],"day":"07","doi":"10.1073/pnas.1306164110","external_id":{"pmid":["23613580"]},"year":"2013","citation":{"ama":"Rodrigues JA, Ruan R, Nishimura T, et al. Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm. <i>Proceedings of the National Academy of Sciences</i>. 2013;110(19):7934-7939. doi:<a href=\"https://doi.org/10.1073/pnas.1306164110\">10.1073/pnas.1306164110</a>","apa":"Rodrigues, J. A., Ruan, R., Nishimura, T., Sharma, M. K., Sharma, R., Ronald, P. C., … Zilberman, D. (2013). Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm. <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1306164110\">https://doi.org/10.1073/pnas.1306164110</a>","chicago":"Rodrigues, Jessica A., Randy Ruan, Toshiro Nishimura, Manoj K. Sharma, Rita Sharma, Pamela C Ronald, Robert L. Fischer, and Daniel Zilberman. “Imprinted Expression of Genes and Small RNA Is Associated with Localized Hypomethylation of the Maternal Genome in Rice Endosperm.” <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences, 2013. <a href=\"https://doi.org/10.1073/pnas.1306164110\">https://doi.org/10.1073/pnas.1306164110</a>.","ieee":"J. A. Rodrigues <i>et al.</i>, “Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm,” <i>Proceedings of the National Academy of Sciences</i>, vol. 110, no. 19. National Academy of Sciences, pp. 7934–7939, 2013.","short":"J.A. Rodrigues, R. Ruan, T. Nishimura, M.K. Sharma, R. Sharma, P.C. Ronald, R.L. Fischer, D. Zilberman, Proceedings of the National Academy of Sciences 110 (2013) 7934–7939.","mla":"Rodrigues, Jessica A., et al. “Imprinted Expression of Genes and Small RNA Is Associated with Localized Hypomethylation of the Maternal Genome in Rice Endosperm.” <i>Proceedings of the National Academy of Sciences</i>, vol. 110, no. 19, National Academy of Sciences, 2013, pp. 7934–39, doi:<a href=\"https://doi.org/10.1073/pnas.1306164110\">10.1073/pnas.1306164110</a>.","ista":"Rodrigues JA, Ruan R, Nishimura T, Sharma MK, Sharma R, Ronald PC, Fischer RL, Zilberman D. 2013. Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm. Proceedings of the National Academy of Sciences. 110(19), 7934–7939."},"date_updated":"2021-12-14T08:26:44Z","article_type":"original","publisher":"National Academy of Sciences","quality_controlled":"1","page":"7934-7939","intvolume":"       110","title":"Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm","department":[{"_id":"DaZi"}],"article_processing_charge":"No","date_created":"2021-06-07T07:31:02Z","publication_status":"published","issue":"19","author":[{"full_name":"Rodrigues, Jessica A.","last_name":"Rodrigues","first_name":"Jessica A."},{"full_name":"Ruan, Randy","last_name":"Ruan","first_name":"Randy"},{"first_name":"Toshiro","last_name":"Nishimura","full_name":"Nishimura, Toshiro"},{"last_name":"Sharma","first_name":"Manoj K.","full_name":"Sharma, Manoj K."},{"full_name":"Sharma, Rita","last_name":"Sharma","first_name":"Rita"},{"full_name":"Ronald, Pamela C","first_name":"Pamela C","last_name":"Ronald"},{"full_name":"Fischer, Robert L.","first_name":"Robert L.","last_name":"Fischer"},{"last_name":"Zilberman","first_name":"Daniel","full_name":"Zilberman, Daniel","orcid":"0000-0002-0123-8649","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1"}],"scopus_import":"1","pmid":1,"_id":"9481"},{"date_published":"2013-02-11T00:00:00Z","type":"journal_article","publication_identifier":{"eissn":["1878-1551"],"issn":["1534-5807"]},"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.devcel.2013.01.014"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","publication":"Developmental Cell","oa_version":"Published Version","month":"02","language":[{"iso":"eng"}],"date_updated":"2023-05-08T11:00:59Z","year":"2013","citation":{"ama":"Feng X, Zilberman D, Dickinson H. A conversation across generations: Soma-germ cell crosstalk in plants. <i>Developmental Cell</i>. 2013;24(3):215-225. doi:<a href=\"https://doi.org/10.1016/j.devcel.2013.01.014\">10.1016/j.devcel.2013.01.014</a>","apa":"Feng, X., Zilberman, D., &#38; Dickinson, H. (2013). A conversation across generations: Soma-germ cell crosstalk in plants. <i>Developmental Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.devcel.2013.01.014\">https://doi.org/10.1016/j.devcel.2013.01.014</a>","chicago":"Feng, Xiaoqi, Daniel Zilberman, and Hugh Dickinson. “A Conversation across Generations: Soma-Germ Cell Crosstalk in Plants.” <i>Developmental Cell</i>. Elsevier, 2013. <a href=\"https://doi.org/10.1016/j.devcel.2013.01.014\">https://doi.org/10.1016/j.devcel.2013.01.014</a>.","ieee":"X. Feng, D. Zilberman, and H. Dickinson, “A conversation across generations: Soma-germ cell crosstalk in plants,” <i>Developmental Cell</i>, vol. 24, no. 3. Elsevier, pp. 215–225, 2013.","mla":"Feng, Xiaoqi, et al. “A Conversation across Generations: Soma-Germ Cell Crosstalk in Plants.” <i>Developmental Cell</i>, vol. 24, no. 3, Elsevier, 2013, pp. 215–25, doi:<a href=\"https://doi.org/10.1016/j.devcel.2013.01.014\">10.1016/j.devcel.2013.01.014</a>.","short":"X. Feng, D. Zilberman, H. Dickinson, Developmental Cell 24 (2013) 215–225.","ista":"Feng X, Zilberman D, Dickinson H. 2013. A conversation across generations: Soma-germ cell crosstalk in plants. Developmental Cell. 24(3), 215–225."},"external_id":{"pmid":["23410937"]},"doi":"10.1016/j.devcel.2013.01.014","day":"11","abstract":[{"text":"Plants undergo alternation of generation in which reproductive cells develop in the plant body (\"sporophytic generation\") and then differentiate into a multicellular gamete-forming \"gametophytic generation.\" Different populations of helper cells assist in this transgenerational journey, with somatic tissues supporting early development and single nurse cells supporting gametogenesis. New data reveal a two-way relationship between early reproductive cells and their helpers involving complex epigenetic and signaling networks determining cell number and fate. Later, the egg cell plays a central role in specifying accessory cells, whereas in both gametophytes, companion cells contribute non-cell-autonomously to the epigenetic landscape of the gamete genomes.","lang":"eng"}],"volume":24,"extern":"1","pmid":1,"_id":"9520","scopus_import":"1","author":[{"id":"e0164712-22ee-11ed-b12a-d80fcdf35958","last_name":"Feng","first_name":"Xiaoqi","full_name":"Feng, Xiaoqi","orcid":"0000-0002-4008-1234"},{"id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","orcid":"0000-0002-0123-8649","full_name":"Zilberman, Daniel","first_name":"Daniel","last_name":"Zilberman"},{"full_name":"Dickinson, Hugh","last_name":"Dickinson","first_name":"Hugh"}],"issue":"3","publication_status":"published","department":[{"_id":"DaZi"},{"_id":"XiFe"}],"date_created":"2021-06-08T06:14:50Z","article_processing_charge":"No","title":"A conversation across generations: Soma-germ cell crosstalk in plants","intvolume":"        24","page":"215-225","quality_controlled":"1","publisher":"Elsevier","article_type":"review"},{"oa":1,"publication_identifier":{"issn":["0021-9606"],"eissn":["1089-7690"]},"type":"journal_article","date_published":"2013-04-28T00:00:00Z","status":"public","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","main_file_link":[{"url":"https://pubmed.ncbi.nlm.nih.gov/23635145/","open_access":"1"}],"article_number":"164314","month":"04","oa_version":"Submitted Version","publication":"The Journal of Chemical Physics","language":[{"iso":"eng"}],"abstract":[{"text":"Molecular dynamics simulations of small Cu nanoparticles using three different interatomic potentials at rising temperature indicate that small nanoparticles can undergo solid-solid structural transitions through a direct geometrical conversion route. The direct geometrical conversion can happen for cuboctahedral nanoparticles, which turn into an icosahedra shape: one diagonal of the square faces contracts, and the faces are folded along the diagonal to give rise to two equilateral triangles. The transition is a kinetic process that cannot be fully explained through an energetic point of view. It has low activation energy and fast reaction time in the simulations. The transition mechanism is via the transmission of shear waves initiated from the particle surface and does not involve dislocation activity.","lang":"eng"}],"day":"28","doi":"10.1063/1.4802025","external_id":{"pmid":["23635145"]},"citation":{"ieee":"B. Cheng and A. H. W. Ngan, “Thermally induced solid-solid structural transition of copper nanoparticles through direct geometrical conversion,” <i>The Journal of Chemical Physics</i>, vol. 138, no. 16. AIP Publishing, 2013.","chicago":"Cheng, Bingqing, and Alfonso H. W. Ngan. “Thermally Induced Solid-Solid Structural Transition of Copper Nanoparticles through Direct Geometrical Conversion.” <i>The Journal of Chemical Physics</i>. AIP Publishing, 2013. <a href=\"https://doi.org/10.1063/1.4802025\">https://doi.org/10.1063/1.4802025</a>.","ama":"Cheng B, Ngan AHW. Thermally induced solid-solid structural transition of copper nanoparticles through direct geometrical conversion. <i>The Journal of Chemical Physics</i>. 2013;138(16). doi:<a href=\"https://doi.org/10.1063/1.4802025\">10.1063/1.4802025</a>","apa":"Cheng, B., &#38; Ngan, A. H. W. (2013). Thermally induced solid-solid structural transition of copper nanoparticles through direct geometrical conversion. <i>The Journal of Chemical Physics</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/1.4802025\">https://doi.org/10.1063/1.4802025</a>","ista":"Cheng B, Ngan AHW. 2013. Thermally induced solid-solid structural transition of copper nanoparticles through direct geometrical conversion. The Journal of Chemical Physics. 138(16), 164314.","short":"B. Cheng, A.H.W. Ngan, The Journal of Chemical Physics 138 (2013).","mla":"Cheng, Bingqing, and Alfonso H. W. Ngan. “Thermally Induced Solid-Solid Structural Transition of Copper Nanoparticles through Direct Geometrical Conversion.” <i>The Journal of Chemical Physics</i>, vol. 138, no. 16, 164314, AIP Publishing, 2013, doi:<a href=\"https://doi.org/10.1063/1.4802025\">10.1063/1.4802025</a>."},"year":"2013","date_updated":"2021-08-09T12:35:34Z","extern":"1","volume":138,"intvolume":"       138","title":"Thermally induced solid-solid structural transition of copper nanoparticles through direct geometrical conversion","article_processing_charge":"No","date_created":"2021-07-15T09:27:58Z","publication_status":"published","issue":"16","author":[{"first_name":"Bingqing","last_name":"Cheng","orcid":"0000-0002-3584-9632","full_name":"Cheng, Bingqing","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9"},{"first_name":"Alfonso H. W.","last_name":"Ngan","full_name":"Ngan, Alfonso H. W."}],"scopus_import":"1","pmid":1,"_id":"9663","article_type":"original","publisher":"AIP Publishing","quality_controlled":"1"},{"article_type":"original","publisher":"Elsevier","language":[{"iso":"eng"}],"page":"65-79","quality_controlled":"1","month":"08","title":"The crystal structures of sintered copper nanoparticles: A molecular dynamics study","intvolume":"        47","publication_status":"published","oa_version":"None","date_created":"2021-07-15T14:27:44Z","article_processing_charge":"No","author":[{"first_name":"Bingqing","last_name":"Cheng","orcid":"0000-0002-3584-9632","full_name":"Cheng, Bingqing","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9"},{"full_name":"Ngan, Alfonso H.W.","first_name":"Alfonso H.W.","last_name":"Ngan"}],"_id":"9674","publication":"International Journal of Plasticity","scopus_import":"1","extern":"1","status":"public","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","volume":47,"abstract":[{"text":"The coalescence of nano-crystals during sintering is often found to result in interesting crystalline structures such as multi-fold twins, and yet the plasticity mechanism accompanying their formation is unclear. In this work, the sintering behavior of two unsupported copper nanoparticles initially at room temperature is investigated by molecular dynamics simulations under the constant-energy ensemble. The results reveal that once the two nanoparticles are brought into contact, they often go through drastic structural changes with the inter-particle grain boundary quickly eliminated, and single- and multi-fold twinning occurs frequently in the coalesced product. Whereas the formation of single twins is found to be via the more usual mechanism of emission of Shockley partials on {1 1 1} planes, the formation of fivefold twins, however, takes place via a novel dislocation-free mechanism involving a series of shear and rigid-body rotation processes caused by elastic waves with amplitudes not corresponding to any allowable Burgers vector in the fcc lattice. Such a lattice-wave, dislocation-free twinning mechanism has never been reported before.","lang":"eng"}],"doi":"10.1016/j.ijplas.2013.01.006","day":"01","publication_identifier":{"issn":["0749-6419"]},"date_published":"2013-08-01T00:00:00Z","type":"journal_article","date_updated":"2023-02-23T14:04:30Z","citation":{"ieee":"B. Cheng and A. H. W. Ngan, “The crystal structures of sintered copper nanoparticles: A molecular dynamics study,” <i>International Journal of Plasticity</i>, vol. 47. Elsevier, pp. 65–79, 2013.","chicago":"Cheng, Bingqing, and Alfonso H.W. Ngan. “The Crystal Structures of Sintered Copper Nanoparticles: A Molecular Dynamics Study.” <i>International Journal of Plasticity</i>. Elsevier, 2013. <a href=\"https://doi.org/10.1016/j.ijplas.2013.01.006\">https://doi.org/10.1016/j.ijplas.2013.01.006</a>.","apa":"Cheng, B., &#38; Ngan, A. H. W. (2013). The crystal structures of sintered copper nanoparticles: A molecular dynamics study. <i>International Journal of Plasticity</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ijplas.2013.01.006\">https://doi.org/10.1016/j.ijplas.2013.01.006</a>","ama":"Cheng B, Ngan AHW. The crystal structures of sintered copper nanoparticles: A molecular dynamics study. <i>International Journal of Plasticity</i>. 2013;47:65-79. doi:<a href=\"https://doi.org/10.1016/j.ijplas.2013.01.006\">10.1016/j.ijplas.2013.01.006</a>","ista":"Cheng B, Ngan AHW. 2013. The crystal structures of sintered copper nanoparticles: A molecular dynamics study. International Journal of Plasticity. 47, 65–79.","mla":"Cheng, Bingqing, and Alfonso H. W. Ngan. “The Crystal Structures of Sintered Copper Nanoparticles: A Molecular Dynamics Study.” <i>International Journal of Plasticity</i>, vol. 47, Elsevier, 2013, pp. 65–79, doi:<a href=\"https://doi.org/10.1016/j.ijplas.2013.01.006\">10.1016/j.ijplas.2013.01.006</a>.","short":"B. Cheng, A.H.W. Ngan, International Journal of Plasticity 47 (2013) 65–79."},"year":"2013"},{"volume":74,"extern":"1","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","status":"public","doi":"10.1016/j.commatsci.2013.03.014","day":"01","publication_identifier":{"issn":["0927-0256"]},"abstract":[{"lang":"eng","text":"Despite its relevance to a range of technological applications including nanocrystalline material fabrication, the sintering mechanisms of nanoparticles have not been well understood. It has been recognized that extrapolation from understanding of macro-particle sintering is unreliable for the nano-particle size regime. In this work, the sintering behaviour of copper nanoparticles under periodic boundary conditions at different temperatures and pressures was investigated by Molecular Dynamics simulations. It was found that smaller particle sizes, higher temperature and higher external pressure facilitate densification. Through a comparison with a two-sphere model, the governing mechanisms for many nanoparticles sintered at low temperature (T⩽900K) were identified to be a variety of plasticity processes including dislocation, twinning and even amorphization at the contact neck regions, due to the presence of high stresses."}],"date_updated":"2023-02-23T14:04:35Z","citation":{"ama":"Cheng B, Ngan AHW. The sintering and densification behaviour of many copper nanoparticles: A molecular dynamics study. <i>Computational Materials Science</i>. 2013;74:1-11. doi:<a href=\"https://doi.org/10.1016/j.commatsci.2013.03.014\">10.1016/j.commatsci.2013.03.014</a>","apa":"Cheng, B., &#38; Ngan, A. H. W. (2013). The sintering and densification behaviour of many copper nanoparticles: A molecular dynamics study. <i>Computational Materials Science</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.commatsci.2013.03.014\">https://doi.org/10.1016/j.commatsci.2013.03.014</a>","ieee":"B. Cheng and A. H. W. Ngan, “The sintering and densification behaviour of many copper nanoparticles: A molecular dynamics study,” <i>Computational Materials Science</i>, vol. 74. Elsevier, pp. 1–11, 2013.","chicago":"Cheng, Bingqing, and Alfonso H.W. Ngan. “The Sintering and Densification Behaviour of Many Copper Nanoparticles: A Molecular Dynamics Study.” <i>Computational Materials Science</i>. Elsevier, 2013. <a href=\"https://doi.org/10.1016/j.commatsci.2013.03.014\">https://doi.org/10.1016/j.commatsci.2013.03.014</a>.","short":"B. Cheng, A.H.W. Ngan, Computational Materials Science 74 (2013) 1–11.","mla":"Cheng, Bingqing, and Alfonso H. W. Ngan. “The Sintering and Densification Behaviour of Many Copper Nanoparticles: A Molecular Dynamics Study.” <i>Computational Materials Science</i>, vol. 74, Elsevier, 2013, pp. 1–11, doi:<a href=\"https://doi.org/10.1016/j.commatsci.2013.03.014\">10.1016/j.commatsci.2013.03.014</a>.","ista":"Cheng B, Ngan AHW. 2013. The sintering and densification behaviour of many copper nanoparticles: A molecular dynamics study. Computational Materials Science. 74, 1–11."},"year":"2013","date_published":"2013-06-01T00:00:00Z","type":"journal_article","publisher":"Elsevier","article_type":"original","page":"1-11","quality_controlled":"1","language":[{"iso":"eng"}],"oa_version":"None","publication_status":"published","date_created":"2021-07-16T06:46:38Z","article_processing_charge":"No","month":"06","title":"The sintering and densification behaviour of many copper nanoparticles: A molecular dynamics study","intvolume":"        74","_id":"9676","publication":"Computational Materials Science","scopus_import":"1","author":[{"orcid":"0000-0002-3584-9632","full_name":"Cheng, Bingqing","first_name":"Bingqing","last_name":"Cheng","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9"},{"full_name":"Ngan, Alfonso H.W.","last_name":"Ngan","first_name":"Alfonso H.W."}]},{"citation":{"ieee":"B. Cheng and A. H. W. Ngan, “Crystal plasticity of Cu nanocrystals during collision,” <i>Materials Science and Engineering: A</i>, vol. 585. Elsevier, pp. 326–334, 2013.","chicago":"Cheng, Bingqing, and Alfonso H.W. Ngan. “Crystal Plasticity of Cu Nanocrystals during Collision.” <i>Materials Science and Engineering: A</i>. Elsevier, 2013. <a href=\"https://doi.org/10.1016/j.msea.2013.07.065\">https://doi.org/10.1016/j.msea.2013.07.065</a>.","ama":"Cheng B, Ngan AHW. Crystal plasticity of Cu nanocrystals during collision. <i>Materials Science and Engineering: A</i>. 2013;585:326-334. doi:<a href=\"https://doi.org/10.1016/j.msea.2013.07.065\">10.1016/j.msea.2013.07.065</a>","apa":"Cheng, B., &#38; Ngan, A. H. W. (2013). Crystal plasticity of Cu nanocrystals during collision. <i>Materials Science and Engineering: A</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.msea.2013.07.065\">https://doi.org/10.1016/j.msea.2013.07.065</a>","ista":"Cheng B, Ngan AHW. 2013. Crystal plasticity of Cu nanocrystals during collision. Materials Science and Engineering: A. 585, 326–334.","mla":"Cheng, Bingqing, and Alfonso H. W. Ngan. “Crystal Plasticity of Cu Nanocrystals during Collision.” <i>Materials Science and Engineering: A</i>, vol. 585, Elsevier, 2013, pp. 326–34, doi:<a href=\"https://doi.org/10.1016/j.msea.2013.07.065\">10.1016/j.msea.2013.07.065</a>.","short":"B. Cheng, A.H.W. Ngan, Materials Science and Engineering: A 585 (2013) 326–334."},"year":"2013","date_updated":"2023-02-23T14:04:51Z","type":"journal_article","date_published":"2013-11-15T00:00:00Z","day":"15","publication_identifier":{"issn":["0921-5093"]},"doi":"10.1016/j.msea.2013.07.065","abstract":[{"lang":"eng","text":"In this work, we simulate the response of two Cu nanoparticles colliding at different approaching rates at room temperature by MD. For small nanospheres, the formation of single twins is favored at high approach rates, whereas larger nanospheres mainly deform by dislocation slip. For small nanocubes with large {100} flat surfaces, however, a dislocation-free direct geometrical conversion process that leads to five-fold twinning dominates except at highly retarded approaching rates. For larger nanocubes, single twin formation is the governing plasticity mechanism. The probability for plastic deformation by dislocation slip or twinning is attributed to the abundance of surface steps, which act as sites for dislocation nucleation."}],"volume":585,"status":"public","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","extern":"1","scopus_import":"1","publication":"Materials Science and Engineering: A","_id":"9682","author":[{"last_name":"Cheng","first_name":"Bingqing","full_name":"Cheng, Bingqing","orcid":"0000-0002-3584-9632","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9"},{"last_name":"Ngan","first_name":"Alfonso H.W.","full_name":"Ngan, Alfonso H.W."}],"date_created":"2021-07-19T09:04:36Z","article_processing_charge":"No","publication_status":"published","oa_version":"None","intvolume":"       585","title":"Crystal plasticity of Cu nanocrystals during collision","month":"11","quality_controlled":"1","page":"326-334","language":[{"iso":"eng"}],"publisher":"Elsevier","article_type":"original"},{"language":[{"iso":"eng"}],"keyword":["general physics and astronomy"],"month":"12","article_number":"245702","oa_version":"Preprint","publication":"Physical Review Letters","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","status":"public","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1311.4681"}],"oa":1,"publication_identifier":{"issn":["0031-9007"],"eissn":["1079-7114"]},"date_published":"2013-12-11T00:00:00Z","type":"journal_article","article_type":"original","publisher":"American Physical Society","quality_controlled":"1","title":"Living clusters and crystals from low-density suspensions of active colloids","intvolume":"       111","publication_status":"published","date_created":"2021-11-29T13:29:31Z","article_processing_charge":"No","author":[{"full_name":"Mognetti, B. M.","first_name":"B. M.","last_name":"Mognetti"},{"orcid":"0000-0002-7854-2139","full_name":"Šarić, Anđela","first_name":"Anđela","last_name":"Šarić","id":"bf63d406-f056-11eb-b41d-f263a6566d8b"},{"first_name":"S.","last_name":"Angioletti-Uberti","full_name":"Angioletti-Uberti, S."},{"last_name":"Cacciuto","first_name":"A.","full_name":"Cacciuto, A."},{"full_name":"Valeriani, C.","last_name":"Valeriani","first_name":"C."},{"full_name":"Frenkel, D.","first_name":"D.","last_name":"Frenkel"}],"issue":"24","pmid":1,"_id":"10384","scopus_import":"1","extern":"1","acknowledgement":"This work was supported by the ERC Advanced Grant 227758, the National Science Foundation under Career Grant No. DMR-0846426, the Wolfson Merit Award 2007/R3 of the Royal Society of London and the EPSRC Programme Grant EP/I001352/1. BMM acknowledge T. Curk and A. Ballard for useful discussions. C. V. acknowledges financial support from a Juan de la Cierva Fellowship, from the Marie Curie Integration Grant PCIG-GA-2011-303941 ANISOKINEQ, and from the National Project FIS2010- 16159. S. A-U acknowledges support from the Alexander von Humboldt Foundation.","volume":111,"abstract":[{"text":"Recent studies aimed at investigating artificial analogs of bacterial colonies have shown that low-density suspensions of self-propelled particles confined in two dimensions can assemble into finite aggregates that merge and split, but have a typical size that remains constant (living clusters). In this Letter, we address the problem of the formation of living clusters and crystals of active particles in three dimensions. We study two systems: self-propelled particles interacting via a generic attractive potential and colloids that can move toward each other as a result of active agents (e.g., by molecular motors). In both cases, fluidlike “living” clusters form. We explain this general feature in terms of the balance between active forces and regression to thermodynamic equilibrium. This balance can be quantified in terms of a dimensionless number that allows us to collapse the observed clustering behavior onto a universal curve. We also discuss how active motion affects the kinetics of crystal formation.","lang":"eng"}],"doi":"10.1103/physrevlett.111.245702","arxiv":1,"day":"11","external_id":{"pmid":["24483677"],"arxiv":["1311.4681"]},"date_updated":"2021-11-29T14:05:19Z","citation":{"ama":"Mognetti BM, Šarić A, Angioletti-Uberti S, Cacciuto A, Valeriani C, Frenkel D. Living clusters and crystals from low-density suspensions of active colloids. <i>Physical Review Letters</i>. 2013;111(24). doi:<a href=\"https://doi.org/10.1103/physrevlett.111.245702\">10.1103/physrevlett.111.245702</a>","apa":"Mognetti, B. M., Šarić, A., Angioletti-Uberti, S., Cacciuto, A., Valeriani, C., &#38; Frenkel, D. (2013). Living clusters and crystals from low-density suspensions of active colloids. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevlett.111.245702\">https://doi.org/10.1103/physrevlett.111.245702</a>","chicago":"Mognetti, B. M., Anđela Šarić, S. Angioletti-Uberti, A. Cacciuto, C. Valeriani, and D. Frenkel. “Living Clusters and Crystals from Low-Density Suspensions of Active Colloids.” <i>Physical Review Letters</i>. American Physical Society, 2013. <a href=\"https://doi.org/10.1103/physrevlett.111.245702\">https://doi.org/10.1103/physrevlett.111.245702</a>.","ieee":"B. M. Mognetti, A. Šarić, S. Angioletti-Uberti, A. Cacciuto, C. Valeriani, and D. Frenkel, “Living clusters and crystals from low-density suspensions of active colloids,” <i>Physical Review Letters</i>, vol. 111, no. 24. American Physical Society, 2013.","mla":"Mognetti, B. M., et al. “Living Clusters and Crystals from Low-Density Suspensions of Active Colloids.” <i>Physical Review Letters</i>, vol. 111, no. 24, 245702, American Physical Society, 2013, doi:<a href=\"https://doi.org/10.1103/physrevlett.111.245702\">10.1103/physrevlett.111.245702</a>.","short":"B.M. Mognetti, A. Šarić, S. Angioletti-Uberti, A. Cacciuto, C. Valeriani, D. Frenkel, Physical Review Letters 111 (2013).","ista":"Mognetti BM, Šarić A, Angioletti-Uberti S, Cacciuto A, Valeriani C, Frenkel D. 2013. Living clusters and crystals from low-density suspensions of active colloids. Physical Review Letters. 111(24), 245702."},"year":"2013"},{"extern":"1","volume":9,"acknowledgement":"This work was supported by the National Science Foundation under Career Grant no. DMR-0846426.","abstract":[{"text":"We show how self-assembly of sticky nanoparticles can drive radial collapse of thin-walled nanotubes. Using numerical simulations, we study the transition as a function of the geometric and elastic parameters of the nanotube and the binding strength of the nanoparticles. We find that it is possible to derive a simple scaling law relating all these parameters, and estimate bounds for the onset conditions leading to the collapse of the nanotube. We also study the reverse process – the nanoparticle release from the folded state – and find that the stability of the collapsed state can be greatly improved by increasing the bending rigidity of the nanotubes. Our results suggest ways to strengthen the mechanical properties of nanotubes, but also indicate that the control of nanoparticle self-assembly on these nanotubes can lead to nanoparticle-laden responsive materials.","lang":"eng"}],"day":"08","doi":"10.1039/c3sm51495a","year":"2013","citation":{"chicago":"Napoli, Joseph A., Anđela Šarić, and Angelo Cacciuto. “Collapsing Nanoparticle-Laden Nanotubes.” <i>Soft Matter</i>. Royal Society of Chemistry, 2013. <a href=\"https://doi.org/10.1039/c3sm51495a\">https://doi.org/10.1039/c3sm51495a</a>.","ieee":"J. A. Napoli, A. Šarić, and A. Cacciuto, “Collapsing nanoparticle-laden nanotubes,” <i>Soft Matter</i>, vol. 9, no. 37. Royal Society of Chemistry, pp. 8881–8886, 2013.","apa":"Napoli, J. A., Šarić, A., &#38; Cacciuto, A. (2013). Collapsing nanoparticle-laden nanotubes. <i>Soft Matter</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/c3sm51495a\">https://doi.org/10.1039/c3sm51495a</a>","ama":"Napoli JA, Šarić A, Cacciuto A. Collapsing nanoparticle-laden nanotubes. <i>Soft Matter</i>. 2013;9(37):8881-8886. doi:<a href=\"https://doi.org/10.1039/c3sm51495a\">10.1039/c3sm51495a</a>","ista":"Napoli JA, Šarić A, Cacciuto A. 2013. Collapsing nanoparticle-laden nanotubes. Soft Matter. 9(37), 8881–8886.","mla":"Napoli, Joseph A., et al. “Collapsing Nanoparticle-Laden Nanotubes.” <i>Soft Matter</i>, vol. 9, no. 37, Royal Society of Chemistry, 2013, pp. 8881–86, doi:<a href=\"https://doi.org/10.1039/c3sm51495a\">10.1039/c3sm51495a</a>.","short":"J.A. Napoli, A. Šarić, A. Cacciuto, Soft Matter 9 (2013) 8881–8886."},"date_updated":"2021-11-29T14:05:23Z","article_type":"original","publisher":"Royal Society of Chemistry","quality_controlled":"1","page":"8881-8886","intvolume":"         9","title":"Collapsing nanoparticle-laden nanotubes","article_processing_charge":"No","date_created":"2021-11-29T13:31:24Z","publication_status":"published","issue":"37","author":[{"full_name":"Napoli, Joseph A.","last_name":"Napoli","first_name":"Joseph A."},{"id":"bf63d406-f056-11eb-b41d-f263a6566d8b","full_name":"Šarić, Anđela","orcid":"0000-0002-7854-2139","last_name":"Šarić","first_name":"Anđela"},{"full_name":"Cacciuto, Angelo","first_name":"Angelo","last_name":"Cacciuto"}],"scopus_import":"1","_id":"10385","status":"public","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","publication_identifier":{"eissn":["1744-6848"],"issn":["1744-683X"]},"type":"journal_article","date_published":"2013-08-08T00:00:00Z","keyword":["condensed matter physics","general chemistry"],"language":[{"iso":"eng"}],"month":"08","oa_version":"None","publication":"Soft Matter"},{"quality_controlled":"1","publisher":"Royal Society of Chemistry","article_type":"original","_id":"10386","scopus_import":"1","author":[{"full_name":"Šarić, Anđela","orcid":"0000-0002-7854-2139","last_name":"Šarić","first_name":"Anđela","id":"bf63d406-f056-11eb-b41d-f263a6566d8b"},{"full_name":"Cacciuto, Angelo","first_name":"Angelo","last_name":"Cacciuto"}],"issue":"29","publication_status":"published","article_processing_charge":"No","date_created":"2021-11-29T14:06:32Z","title":"Self-assembly of nanoparticles adsorbed on fluid and elastic membranes","intvolume":"         9","acknowledgement":"This work was supported by the National Science Foundation under Career Grant No. DMR 0846426. The authors thank J. C. Pàmies for many fruitful discussions on the subject.","volume":9,"extern":"1","date_updated":"2021-11-29T14:29:31Z","year":"2013","citation":{"short":"A. Šarić, A. Cacciuto, Soft Matter 9 (2013).","mla":"Šarić, Anđela, and Angelo Cacciuto. “Self-Assembly of Nanoparticles Adsorbed on Fluid and Elastic Membranes.” <i>Soft Matter</i>, vol. 9, no. 29, 6677, Royal Society of Chemistry, 2013, doi:<a href=\"https://doi.org/10.1039/c3sm50188d\">10.1039/c3sm50188d</a>.","ista":"Šarić A, Cacciuto A. 2013. Self-assembly of nanoparticles adsorbed on fluid and elastic membranes. Soft Matter. 9(29), 6677.","apa":"Šarić, A., &#38; Cacciuto, A. (2013). Self-assembly of nanoparticles adsorbed on fluid and elastic membranes. <i>Soft Matter</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/c3sm50188d\">https://doi.org/10.1039/c3sm50188d</a>","ama":"Šarić A, Cacciuto A. Self-assembly of nanoparticles adsorbed on fluid and elastic membranes. <i>Soft Matter</i>. 2013;9(29). doi:<a href=\"https://doi.org/10.1039/c3sm50188d\">10.1039/c3sm50188d</a>","chicago":"Šarić, Anđela, and Angelo Cacciuto. “Self-Assembly of Nanoparticles Adsorbed on Fluid and Elastic Membranes.” <i>Soft Matter</i>. Royal Society of Chemistry, 2013. <a href=\"https://doi.org/10.1039/c3sm50188d\">https://doi.org/10.1039/c3sm50188d</a>.","ieee":"A. Šarić and A. Cacciuto, “Self-assembly of nanoparticles adsorbed on fluid and elastic membranes,” <i>Soft Matter</i>, vol. 9, no. 29. Royal Society of Chemistry, 2013."},"doi":"10.1039/c3sm50188d","day":"03","abstract":[{"lang":"eng","text":"In this paper we review recent numerical and theoretical developments of particle self-assembly on fluid and elastic membranes and compare them to available experimental realizations. We discuss the problem and its applications in biology and materials science, and give an overview of numerical models and strategies to study these systems across all length-scales. As this is a very broad field, this review focuses exclusively on surface-driven aggregation of nanoparticles that are at least one order of magnitude larger than the surface thickness and are adsorbed onto it. In this regime, all chemical details of the surface can be ignored in favor of a coarse-grained representation, and the collective behavior of many particles can be monitored and analyzed. We review the existing literature on how the mechanical properties and the geometry of the surface affect the structure of the particle aggregates and how these can drive shape deformation on the surface."}],"language":[{"iso":"eng"}],"keyword":["condensed matter physics","general chemistry"],"publication":"Soft Matter","oa_version":"None","month":"05","article_number":"6677","main_file_link":[{"url":"https://pubs.rsc.org/en/content/articlehtml/2013/sm/c3sm50188d"}],"status":"public","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","date_published":"2013-05-03T00:00:00Z","type":"journal_article","publication_identifier":{"eissn":["1744-6848"],"issn":["1744-683X"]}},{"article_type":"original","publisher":"De Gruyter","file_date_updated":"2021-12-01T14:38:08Z","quality_controlled":"1","title":"Stimfit: A fast visualization and analysis environment for cellular neurophysiology","intvolume":"        58","publication_status":"published","date_created":"2021-12-01T14:35:35Z","article_processing_charge":"No","department":[{"_id":"PeJo"}],"author":[{"full_name":"Schlögl, Alois","orcid":"0000-0002-5621-8100","last_name":"Schlögl","first_name":"Alois","id":"45BF87EE-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Peter M","last_name":"Jonas","orcid":"0000-0001-5001-4804","full_name":"Jonas, Peter M","id":"353C1B58-F248-11E8-B48F-1D18A9856A87"},{"first_name":"C.","last_name":"Schmidt-Hieber","full_name":"Schmidt-Hieber, C."},{"full_name":"Guzman, S. J.","last_name":"Guzman","first_name":"S. J."}],"issue":"SI-1-Track-G","_id":"10396","pmid":1,"ddc":["005","610"],"volume":58,"abstract":[{"text":"Stimfit is a free cross-platform software package for viewing and analyzing electrophysiological data. It supports most standard file types for cellular neurophysiology and other biomedical formats. Its analysis algorithms have been used and validated in several experimental laboratories. Its embedded Python scripting interface makes Stimfit highly extensible and customizable.","lang":"eng"}],"doi":"10.1515/bmt-2013-4181","day":"01","external_id":{"pmid":["24042795"]},"date_updated":"2021-12-02T12:51:12Z","year":"2013","citation":{"apa":"Schlögl, A., Jonas, P. M., Schmidt-Hieber, C., &#38; Guzman, S. J. (2013). Stimfit: A fast visualization and analysis environment for cellular neurophysiology. <i>Biomedical Engineering / Biomedizinische Technik</i>. Graz, Austria: De Gruyter. <a href=\"https://doi.org/10.1515/bmt-2013-4181\">https://doi.org/10.1515/bmt-2013-4181</a>","ama":"Schlögl A, Jonas PM, Schmidt-Hieber C, Guzman SJ. Stimfit: A fast visualization and analysis environment for cellular neurophysiology. <i>Biomedical Engineering / Biomedizinische Technik</i>. 2013;58(SI-1-Track-G). doi:<a href=\"https://doi.org/10.1515/bmt-2013-4181\">10.1515/bmt-2013-4181</a>","chicago":"Schlögl, Alois, Peter M Jonas, C. Schmidt-Hieber, and S. J. Guzman. “Stimfit: A Fast Visualization and Analysis Environment for Cellular Neurophysiology.” <i>Biomedical Engineering / Biomedizinische Technik</i>. De Gruyter, 2013. <a href=\"https://doi.org/10.1515/bmt-2013-4181\">https://doi.org/10.1515/bmt-2013-4181</a>.","ieee":"A. Schlögl, P. M. Jonas, C. Schmidt-Hieber, and S. J. Guzman, “Stimfit: A fast visualization and analysis environment for cellular neurophysiology,” <i>Biomedical Engineering / Biomedizinische Technik</i>, vol. 58, no. SI-1-Track-G. De Gruyter, 2013.","mla":"Schlögl, Alois, et al. “Stimfit: A Fast Visualization and Analysis Environment for Cellular Neurophysiology.” <i>Biomedical Engineering / Biomedizinische Technik</i>, vol. 58, no. SI-1-Track-G, 000010151520134181, De Gruyter, 2013, doi:<a href=\"https://doi.org/10.1515/bmt-2013-4181\">10.1515/bmt-2013-4181</a>.","short":"A. Schlögl, P.M. Jonas, C. Schmidt-Hieber, S.J. Guzman, Biomedical Engineering / Biomedizinische Technik 58 (2013).","ista":"Schlögl A, Jonas PM, Schmidt-Hieber C, Guzman SJ. 2013. Stimfit: A fast visualization and analysis environment for cellular neurophysiology. Biomedical Engineering / Biomedizinische Technik. 58(SI-1-Track-G), 000010151520134181."},"conference":{"name":"BMT: Biomedizinische Technik ","start_date":"2013-09-19","end_date":"2013-09-21","location":"Graz, Austria"},"language":[{"iso":"eng"}],"keyword":["biomedical engineering","data analysis","free software"],"month":"08","article_number":"000010151520134181","oa_version":"Submitted Version","publication":"Biomedical Engineering / Biomedizinische Technik","has_accepted_license":"1","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","status":"public","file":[{"date_updated":"2021-12-01T14:38:08Z","content_type":"application/pdf","file_name":"Schloegl_Abstract-BMT2013.pdf","date_created":"2021-12-01T14:38:08Z","checksum":"cdfc5339b530a25d6079f7223f0b1f16","file_size":149825,"file_id":"10397","creator":"schloegl","success":1,"relation":"main_file","access_level":"open_access"}],"oa":1,"publication_identifier":{"issn":["0013-5585"],"eissn":["1862-278X"]},"date_published":"2013-08-01T00:00:00Z","type":"journal_article"},{"author":[{"id":"540c9bbd-f2de-11ec-812d-d04a5be85630","first_name":"Monika H","last_name":"Henzinger","orcid":"0000-0002-5008-6530","full_name":"Henzinger, Monika H"},{"full_name":"Krinninger, Sebastian","last_name":"Krinninger","first_name":"Sebastian"},{"first_name":"Danupon","last_name":"Nanongkai","full_name":"Nanongkai, Danupon"}],"_id":"11856","scopus_import":"1","title":"Dynamic approximate all-pairs shortest paths: Breaking the O(mn) barrier and derandomization","publication_status":"published","date_created":"2022-08-16T08:22:37Z","article_processing_charge":"No","page":"538-547","quality_controlled":"1","publisher":"Institute of Electrical and Electronics Engineers","external_id":{"arxiv":["1308.0776"]},"date_updated":"2023-02-17T09:56:04Z","citation":{"ista":"Henzinger MH, Krinninger S, Nanongkai D. 2013. Dynamic approximate all-pairs shortest paths: Breaking the O(mn) barrier and derandomization. 54th Annual Symposium on Foundations of Computer Science. FOCS: Symposium on Foundations of Computer Science, 538–547.","mla":"Henzinger, Monika H., et al. “Dynamic Approximate All-Pairs Shortest Paths: Breaking the O(Mn) Barrier and Derandomization.” <i>54th Annual Symposium on Foundations of Computer Science</i>, Institute of Electrical and Electronics Engineers, 2013, pp. 538–47, doi:<a href=\"https://doi.org/10.1109/focs.2013.64\">10.1109/focs.2013.64</a>.","short":"M.H. Henzinger, S. Krinninger, D. Nanongkai, in:, 54th Annual Symposium on Foundations of Computer Science, Institute of Electrical and Electronics Engineers, 2013, pp. 538–547.","ieee":"M. H. Henzinger, S. Krinninger, and D. Nanongkai, “Dynamic approximate all-pairs shortest paths: Breaking the O(mn) barrier and derandomization,” in <i>54th Annual Symposium on Foundations of Computer Science</i>, Berkeley, CA, United States, 2013, pp. 538–547.","chicago":"Henzinger, Monika H, Sebastian Krinninger, and Danupon Nanongkai. “Dynamic Approximate All-Pairs Shortest Paths: Breaking the O(Mn) Barrier and Derandomization.” In <i>54th Annual Symposium on Foundations of Computer Science</i>, 538–47. Institute of Electrical and Electronics Engineers, 2013. <a href=\"https://doi.org/10.1109/focs.2013.64\">https://doi.org/10.1109/focs.2013.64</a>.","apa":"Henzinger, M. H., Krinninger, S., &#38; Nanongkai, D. (2013). Dynamic approximate all-pairs shortest paths: Breaking the O(mn) barrier and derandomization. In <i>54th Annual Symposium on Foundations of Computer Science</i> (pp. 538–547). Berkeley, CA, United States: Institute of Electrical and Electronics Engineers. <a href=\"https://doi.org/10.1109/focs.2013.64\">https://doi.org/10.1109/focs.2013.64</a>","ama":"Henzinger MH, Krinninger S, Nanongkai D. Dynamic approximate all-pairs shortest paths: Breaking the O(mn) barrier and derandomization. In: <i>54th Annual Symposium on Foundations of Computer Science</i>. Institute of Electrical and Electronics Engineers; 2013:538-547. doi:<a href=\"https://doi.org/10.1109/focs.2013.64\">10.1109/focs.2013.64</a>"},"year":"2013","abstract":[{"text":"We study dynamic (1 + ϵ)-approximation algorithms for the all-pairs shortest paths problem in unweighted undirected n-node m-edge graphs under edge deletions. The fastest algorithm for this problem is a randomized algorithm with a total update time of Ȏ(mn) and constant query time by Roditty and Zwick (FOCS 2004). The fastest deterministic algorithm is from a 1981 paper by Even and Shiloach (JACM 1981); it has a total update time of O(mn 2 ) and constant query time. We improve these results as follows: (1) We present an algorithm with a total update time of Ȏ(n 5/2 ) and constant query time that has an additive error of two in addition to the 1 + ϵ multiplicative error. This beats the previous Ȏ(mn) time when m = Ω(n 3/2 ). Note that the additive error is unavoidable since, even in the static case, an O(n 3-δ )-time (a so-called truly sub cubic) combinatorial algorithm with 1 + ϵ multiplicative error cannot have an additive error less than 2 - ϵ, unless we make a major breakthrough for Boolean matrix multiplication (Dor, Halperin and Zwick FOCS 1996) and many other long-standing problems (Vassilevska Williams and Williams FOCS 2010). The algorithm can also be turned into a (2 + ϵ)-approximation algorithm (without an additive error) with the same time guarantees, improving the recent (3 + ϵ)-approximation algorithm with Ȏ(n 5/2+O(1√(log n)) ) running time of Bernstein and Roditty (SODA 2011) in terms of both approximation and time guarantees. (2) We present a deterministic algorithm with a total update time of Ȏ(mn) and a query time of O(log log n). The algorithm has a multiplicative error of 1 + ϵ and gives the first improved deterministic algorithm since 1981. It also answers an open question raised by Bernstein in his STOC 2013 paper. In order to achieve our results, we introduce two new techniques: (1) A lazy Even-Shiloach tree algorithm which maintains a bounded-distance shortest-paths tree on a certain type of emulator called locally persevering emulator. (2) A derandomization technique based on moving Even-Shiloach trees as a way to derandomize the standard random set argument. These techniques might be of independent interest.","lang":"eng"}],"doi":"10.1109/focs.2013.64","arxiv":1,"day":"01","extern":"1","publication":"54th Annual Symposium on Foundations of Computer Science","month":"10","oa_version":"Preprint","language":[{"iso":"eng"}],"conference":{"start_date":"2013-10-26","name":"FOCS: Symposium on Foundations of Computer Science","end_date":"2013-10-29","location":"Berkeley, CA, United States"},"date_published":"2013-10-01T00:00:00Z","type":"conference","oa":1,"publication_identifier":{"eisbn":["978-0-7695-5135-7"],"issn":["0272-5428"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1308.0776"}]},{"status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","related_material":{"record":[{"status":"public","relation":"earlier_version","id":"11799"}]},"date_published":"2013-03-25T00:00:00Z","type":"journal_article","publication_identifier":{"issn":["0304-3975"]},"language":[{"iso":"eng"}],"publication":"Theoretical Computer Science","month":"03","oa_version":"None","extern":"1","volume":478,"date_updated":"2023-02-21T16:28:41Z","citation":{"mla":"Dütting, Paul, et al. “Bidder Optimal Assignments for General Utilities.” <i>Theoretical Computer Science</i>, vol. 478, no. 3, Elsevier, 2013, pp. 22–32, doi:<a href=\"https://doi.org/10.1016/j.tcs.2013.01.030\">10.1016/j.tcs.2013.01.030</a>.","short":"P. Dütting, M.H. Henzinger, I. Weber, Theoretical Computer Science 478 (2013) 22–32.","ista":"Dütting P, Henzinger MH, Weber I. 2013. Bidder optimal assignments for general utilities. Theoretical Computer Science. 478(3), 22–32.","ama":"Dütting P, Henzinger MH, Weber I. Bidder optimal assignments for general utilities. <i>Theoretical Computer Science</i>. 2013;478(3):22-32. doi:<a href=\"https://doi.org/10.1016/j.tcs.2013.01.030\">10.1016/j.tcs.2013.01.030</a>","apa":"Dütting, P., Henzinger, M. H., &#38; Weber, I. (2013). Bidder optimal assignments for general utilities. <i>Theoretical Computer Science</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.tcs.2013.01.030\">https://doi.org/10.1016/j.tcs.2013.01.030</a>","chicago":"Dütting, Paul, Monika H Henzinger, and Ingmar Weber. “Bidder Optimal Assignments for General Utilities.” <i>Theoretical Computer Science</i>. Elsevier, 2013. <a href=\"https://doi.org/10.1016/j.tcs.2013.01.030\">https://doi.org/10.1016/j.tcs.2013.01.030</a>.","ieee":"P. Dütting, M. H. Henzinger, and I. Weber, “Bidder optimal assignments for general utilities,” <i>Theoretical Computer Science</i>, vol. 478, no. 3. Elsevier, pp. 22–32, 2013."},"year":"2013","abstract":[{"text":"We study the problem of matching bidders to items where each bidder i has general, strictly monotonic utility functions ui,j(pj) expressing his utility of being matched to item j at price pj. For this setting we prove that a bidder optimal outcome always exists, even when the utility functions are non-linear and non-continuous. We give sufficient conditions under\r\nwhich every mechanism that finds a bidder optimal outcome is incentive compatible. We also give a mechanism that finds a bidder optimal outcome if the conditions for incentive compatibility are satisfied. The running time of this mechanism is exponential in the number of items, but polynomial in the number of bidders.","lang":"eng"}],"doi":"10.1016/j.tcs.2013.01.030","day":"25","page":"22-32","quality_controlled":"1","article_type":"original","publisher":"Elsevier","author":[{"first_name":"Paul","last_name":"Dütting","full_name":"Dütting, Paul"},{"id":"540c9bbd-f2de-11ec-812d-d04a5be85630","full_name":"Henzinger, Monika H","orcid":"0000-0002-5008-6530","last_name":"Henzinger","first_name":"Monika H"},{"full_name":"Weber, Ingmar","last_name":"Weber","first_name":"Ingmar"}],"issue":"3","_id":"11902","scopus_import":"1","title":"Bidder optimal assignments for general utilities","intvolume":"       478","publication_status":"published","date_created":"2022-08-17T11:11:04Z","article_processing_charge":"No"},{"abstract":[{"text":"No catalyst required! A highly efficient, catalyst-free process to generate diimide in situ from hydrazine monohydrate and molecular oxygen for the selective reduction of alkenes has been developed. The use of a gas–liquid segmented flow system allowed safe operating conditions and dramatically enhanced this atom-economical reaction, resulting in short processing times.","lang":"eng"}],"day":"23","publication_identifier":{"issn":["1433-7851"],"eissn":["1521-3773"]},"doi":"10.1002/anie.201303528","type":"journal_article","date_published":"2013-09-23T00:00:00Z","citation":{"ieee":"B. Pieber, S. T. Martinez, D. Cantillo, and C. O. Kappe, “In situ generation of diimide from hydrazine and oxygen: Continuous-flow transfer hydrogenation of olefins,” <i>Angewandte Chemie International Edition</i>, vol. 52, no. 39. Wiley, pp. 10241–10244, 2013.","chicago":"Pieber, Bartholomäus, Sabrina Teixeira Martinez, David Cantillo, and C. Oliver Kappe. “In Situ Generation of Diimide from Hydrazine and Oxygen: Continuous-Flow Transfer Hydrogenation of Olefins.” <i>Angewandte Chemie International Edition</i>. Wiley, 2013. <a href=\"https://doi.org/10.1002/anie.201303528\">https://doi.org/10.1002/anie.201303528</a>.","ama":"Pieber B, Martinez ST, Cantillo D, Kappe CO. In situ generation of diimide from hydrazine and oxygen: Continuous-flow transfer hydrogenation of olefins. <i>Angewandte Chemie International Edition</i>. 2013;52(39):10241-10244. doi:<a href=\"https://doi.org/10.1002/anie.201303528\">10.1002/anie.201303528</a>","apa":"Pieber, B., Martinez, S. T., Cantillo, D., &#38; Kappe, C. O. (2013). In situ generation of diimide from hydrazine and oxygen: Continuous-flow transfer hydrogenation of olefins. <i>Angewandte Chemie International Edition</i>. Wiley. <a href=\"https://doi.org/10.1002/anie.201303528\">https://doi.org/10.1002/anie.201303528</a>","ista":"Pieber B, Martinez ST, Cantillo D, Kappe CO. 2013. In situ generation of diimide from hydrazine and oxygen: Continuous-flow transfer hydrogenation of olefins. Angewandte Chemie International Edition. 52(39), 10241–10244.","mla":"Pieber, Bartholomäus, et al. “In Situ Generation of Diimide from Hydrazine and Oxygen: Continuous-Flow Transfer Hydrogenation of Olefins.” <i>Angewandte Chemie International Edition</i>, vol. 52, no. 39, Wiley, 2013, pp. 10241–44, doi:<a href=\"https://doi.org/10.1002/anie.201303528\">10.1002/anie.201303528</a>.","short":"B. Pieber, S.T. Martinez, D. Cantillo, C.O. Kappe, Angewandte Chemie International Edition 52 (2013) 10241–10244."},"year":"2013","date_updated":"2023-02-21T10:09:21Z","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","volume":52,"intvolume":"        52","month":"09","title":"In situ generation of diimide from hydrazine and oxygen: Continuous-flow transfer hydrogenation of olefins","date_created":"2022-08-24T11:01:47Z","article_processing_charge":"No","oa_version":"None","publication_status":"published","issue":"39","author":[{"id":"93e5e5b2-0da6-11ed-8a41-af589a024726","orcid":"0000-0001-8689-388X","full_name":"Pieber, Bartholomäus","first_name":"Bartholomäus","last_name":"Pieber"},{"last_name":"Martinez","first_name":"Sabrina Teixeira","full_name":"Martinez, Sabrina Teixeira"},{"last_name":"Cantillo","first_name":"David","full_name":"Cantillo, David"},{"first_name":"C. Oliver","last_name":"Kappe","full_name":"Kappe, C. Oliver"}],"scopus_import":"1","publication":"Angewandte Chemie International Edition","_id":"11959","article_type":"letter_note","publisher":"Wiley","language":[{"iso":"eng"}],"quality_controlled":"1","page":"10241-10244"},{"article_type":"letter_note","publisher":"Wiley","language":[{"iso":"eng"}],"quality_controlled":"1","page":"1088-1094","intvolume":"        52","title":"Microwave effects in organic synthesis: Myth or reality?","month":"01","article_processing_charge":"No","date_created":"2022-08-24T11:05:04Z","oa_version":"None","publication_status":"published","issue":"4","author":[{"full_name":"Kappe, C. Oliver","first_name":"C. Oliver","last_name":"Kappe"},{"full_name":"Pieber, Bartholomäus","orcid":"0000-0001-8689-388X","last_name":"Pieber","first_name":"Bartholomäus","id":"93e5e5b2-0da6-11ed-8a41-af589a024726"},{"full_name":"Dallinger, Doris","first_name":"Doris","last_name":"Dallinger"}],"scopus_import":"1","_id":"11960","publication":"Angewandte Chemie International Edition","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","extern":"1","volume":52,"abstract":[{"text":"It's not magic! The effects observed in microwave-irradiated chemical transformations can in most cases be rationalized by purely bulk thermal phenomena associated with rapid heating to elevated temperatures. As discussed in this Essay, the existence of so-called nonthermal or specific microwave effects is highly doubtful.","lang":"eng"}],"day":"21","publication_identifier":{"issn":["1433-7851"],"eissn":["1521-3773"]},"doi":"10.1002/anie.201204103","type":"journal_article","date_published":"2013-01-21T00:00:00Z","year":"2013","citation":{"ama":"Kappe CO, Pieber B, Dallinger D. Microwave effects in organic synthesis: Myth or reality? <i>Angewandte Chemie International Edition</i>. 2013;52(4):1088-1094. doi:<a href=\"https://doi.org/10.1002/anie.201204103\">10.1002/anie.201204103</a>","apa":"Kappe, C. O., Pieber, B., &#38; Dallinger, D. (2013). Microwave effects in organic synthesis: Myth or reality? <i>Angewandte Chemie International Edition</i>. Wiley. <a href=\"https://doi.org/10.1002/anie.201204103\">https://doi.org/10.1002/anie.201204103</a>","chicago":"Kappe, C. Oliver, Bartholomäus Pieber, and Doris Dallinger. “Microwave Effects in Organic Synthesis: Myth or Reality?” <i>Angewandte Chemie International Edition</i>. Wiley, 2013. <a href=\"https://doi.org/10.1002/anie.201204103\">https://doi.org/10.1002/anie.201204103</a>.","ieee":"C. O. Kappe, B. Pieber, and D. Dallinger, “Microwave effects in organic synthesis: Myth or reality?,” <i>Angewandte Chemie International Edition</i>, vol. 52, no. 4. Wiley, pp. 1088–1094, 2013.","mla":"Kappe, C. Oliver, et al. “Microwave Effects in Organic Synthesis: Myth or Reality?” <i>Angewandte Chemie International Edition</i>, vol. 52, no. 4, Wiley, 2013, pp. 1088–94, doi:<a href=\"https://doi.org/10.1002/anie.201204103\">10.1002/anie.201204103</a>.","short":"C.O. Kappe, B. Pieber, D. Dallinger, Angewandte Chemie International Edition 52 (2013) 1088–1094.","ista":"Kappe CO, Pieber B, Dallinger D. 2013. Microwave effects in organic synthesis: Myth or reality? Angewandte Chemie International Edition. 52(4), 1088–1094."},"date_updated":"2023-02-21T10:09:26Z"},{"type":"journal_article","date_published":"2013-02-01T00:00:00Z","citation":{"mla":"Pieber, Bartholomäus, and C. Oliver Kappe. “Direct Aerobic Oxidation of 2-Benzylpyridines in a Gas-Liquid Continuous-Flow Regime Using Propylene Carbonate as a Solvent.” <i>Green Chemistry</i>, vol. 15, no. 2, Royal Society of Chemistry, 2013, pp. 320–24, doi:<a href=\"https://doi.org/10.1039/c2gc36896j\">10.1039/c2gc36896j</a>.","short":"B. Pieber, C.O. Kappe, Green Chemistry 15 (2013) 320–324.","ista":"Pieber B, Kappe CO. 2013. Direct aerobic oxidation of 2-benzylpyridines in a gas-liquid continuous-flow regime using propylene carbonate as a solvent. Green Chemistry. 15(2), 320–324.","ama":"Pieber B, Kappe CO. Direct aerobic oxidation of 2-benzylpyridines in a gas-liquid continuous-flow regime using propylene carbonate as a solvent. <i>Green Chemistry</i>. 2013;15(2):320-324. doi:<a href=\"https://doi.org/10.1039/c2gc36896j\">10.1039/c2gc36896j</a>","apa":"Pieber, B., &#38; Kappe, C. O. (2013). Direct aerobic oxidation of 2-benzylpyridines in a gas-liquid continuous-flow regime using propylene carbonate as a solvent. <i>Green Chemistry</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/c2gc36896j\">https://doi.org/10.1039/c2gc36896j</a>","ieee":"B. Pieber and C. O. Kappe, “Direct aerobic oxidation of 2-benzylpyridines in a gas-liquid continuous-flow regime using propylene carbonate as a solvent,” <i>Green Chemistry</i>, vol. 15, no. 2. Royal Society of Chemistry, pp. 320–324, 2013.","chicago":"Pieber, Bartholomäus, and C. Oliver Kappe. “Direct Aerobic Oxidation of 2-Benzylpyridines in a Gas-Liquid Continuous-Flow Regime Using Propylene Carbonate as a Solvent.” <i>Green Chemistry</i>. Royal Society of Chemistry, 2013. <a href=\"https://doi.org/10.1039/c2gc36896j\">https://doi.org/10.1039/c2gc36896j</a>."},"year":"2013","date_updated":"2023-02-21T10:09:54Z","abstract":[{"lang":"eng","text":"The use of high-temperature/pressure gas–liquid continuous flow conditions dramatically enhances the iron-catalyzed aerobic oxidation of 2-benzylpyridines to their corresponding ketones. Pressurized air serves as a readily available oxygen source and propylene carbonate as a green solvent in this radically intensified preparation of synthetically valuable 2-aroylpyridines."}],"publication_identifier":{"eissn":["1463-9270"],"issn":["1463-9262"]},"day":"01","doi":"10.1039/c2gc36896j","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","extern":"1","volume":15,"issue":"2","author":[{"orcid":"0000-0001-8689-388X","full_name":"Pieber, Bartholomäus","first_name":"Bartholomäus","last_name":"Pieber","id":"93e5e5b2-0da6-11ed-8a41-af589a024726"},{"first_name":"C. Oliver","last_name":"Kappe","full_name":"Kappe, C. Oliver"}],"scopus_import":"1","_id":"11973","publication":"Green Chemistry","intvolume":"        15","title":"Direct aerobic oxidation of 2-benzylpyridines in a gas-liquid continuous-flow regime using propylene carbonate as a solvent","month":"02","article_processing_charge":"No","date_created":"2022-08-25T10:29:21Z","publication_status":"published","oa_version":"None","language":[{"iso":"eng"}],"quality_controlled":"1","page":"320-324","article_type":"letter_note","publisher":"Royal Society of Chemistry"},{"publication_status":"published","article_processing_charge":"No","date_created":"2023-02-20T08:16:39Z","title":"An evaluation of approaches for modelling hydrological processes in high-elevation, glacierized Andean watersheds","intvolume":"        28","_id":"12633","scopus_import":"1","author":[{"full_name":"Ragettli, S.","last_name":"Ragettli","first_name":"S."},{"full_name":"Cortés, G.","first_name":"G.","last_name":"Cortés"},{"first_name":"J.","last_name":"McPhee","full_name":"McPhee, J."},{"id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca","first_name":"Francesca","last_name":"Pellicciotti"}],"issue":"23","publisher":"Wiley","article_type":"original","page":"5674-5695","quality_controlled":"1","doi":"10.1002/hyp.10055","day":"06","abstract":[{"text":"We use two hydrological models of varying complexity to study the Juncal River Basin in the Central Andes of Chile with the aim to understand the degree of conceptualization and the spatial structure that are needed to model present and future streamflows. We use a conceptual semi-distributed model based on elevation bands [Water Evaluation and Planning (WEAP)], frequently used for water management, and a physically oriented, fully distributed model [Topographic Kinematic Wave Approximation and Integration ETH Zurich (TOPKAPI-ETH)] developed for research purposes mainly. We evaluate the ability of the two models to reproduce the key hydrological processes in the basin with emphasis on snow accumulation and melt, streamflow and the relationships between internal processes. Both models are capable of reproducing observed runoff and the evolution of Moderate-resolution Imaging Spectroradiometer snow cover adequately. In spite of WEAP's simple and conceptual approach for modelling snowmelt and its lack of glacier representation and snow gravitational redistribution as well as a proper routing algorithm, this model can reproduce historical data with a similar goodness of fit as the more complex TOPKAPI-ETH. We show that the performance of both models can be improved by using measured precipitation gradients of higher temporal resolution. In contrast to the good performance of the conceptual model for the present climate, however, we demonstrate that the simplifications in WEAP lead to error compensation, which results in different predictions in simulated melt and runoff for a potentially warmer future climate. TOPKAPI-ETH, using a more physical representation of processes, depends less on calibration and thus is less subject to a compensation of errors through different model components. Our results show that data obtained locally in ad hoc short-term field campaigns are needed to complement data extrapolated from long-term records for simulating changes in the water cycle of high-elevation catchments but that these data can only be efficiently used by a model applying a spatially distributed physical representation of hydrological processes.","lang":"eng"}],"date_updated":"2023-02-24T08:48:40Z","citation":{"mla":"Ragettli, S., et al. “An Evaluation of Approaches for Modelling Hydrological Processes in High-Elevation, Glacierized Andean Watersheds.” <i>Hydrological Processes</i>, vol. 28, no. 23, Wiley, 2013, pp. 5674–95, doi:<a href=\"https://doi.org/10.1002/hyp.10055\">10.1002/hyp.10055</a>.","short":"S. Ragettli, G. Cortés, J. McPhee, F. Pellicciotti, Hydrological Processes 28 (2013) 5674–5695.","ista":"Ragettli S, Cortés G, McPhee J, Pellicciotti F. 2013. An evaluation of approaches for modelling hydrological processes in high-elevation, glacierized Andean watersheds. Hydrological Processes. 28(23), 5674–5695.","ama":"Ragettli S, Cortés G, McPhee J, Pellicciotti F. An evaluation of approaches for modelling hydrological processes in high-elevation, glacierized Andean watersheds. <i>Hydrological Processes</i>. 2013;28(23):5674-5695. doi:<a href=\"https://doi.org/10.1002/hyp.10055\">10.1002/hyp.10055</a>","apa":"Ragettli, S., Cortés, G., McPhee, J., &#38; Pellicciotti, F. (2013). An evaluation of approaches for modelling hydrological processes in high-elevation, glacierized Andean watersheds. <i>Hydrological Processes</i>. Wiley. <a href=\"https://doi.org/10.1002/hyp.10055\">https://doi.org/10.1002/hyp.10055</a>","chicago":"Ragettli, S., G. Cortés, J. McPhee, and Francesca Pellicciotti. “An Evaluation of Approaches for Modelling Hydrological Processes in High-Elevation, Glacierized Andean Watersheds.” <i>Hydrological Processes</i>. Wiley, 2013. <a href=\"https://doi.org/10.1002/hyp.10055\">https://doi.org/10.1002/hyp.10055</a>.","ieee":"S. Ragettli, G. Cortés, J. McPhee, and F. Pellicciotti, “An evaluation of approaches for modelling hydrological processes in high-elevation, glacierized Andean watersheds,” <i>Hydrological Processes</i>, vol. 28, no. 23. Wiley, pp. 5674–5695, 2013."},"year":"2013","volume":28,"extern":"1","oa_version":"None","month":"09","publication":"Hydrological Processes","language":[{"iso":"eng"}],"keyword":["Water Science and Technology"],"publication_identifier":{"issn":["0885-6087"]},"date_published":"2013-09-06T00:00:00Z","type":"journal_article","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"}]