---
_id: '497'
abstract:
- lang: eng
  text: 'One central issue in the formal design and analysis of reactive systems is
    the notion of refinement that asks whether all behaviors of the implementation
    is allowed by the specification. The local interpretation of behavior leads to
    the notion of simulation. Alternating transition systems (ATSs) provide a general
    model for composite reactive systems, and the simulation relation for ATSs is
    known as alternating simulation. The simulation relation for fair transition systems
    is called fair simulation. In this work our main contributions are as follows:
    (1) We present an improved algorithm for fair simulation with Büchi fairness constraints;
    our algorithm requires O(n 3·m) time as compared to the previous known O(n 6)-time
    algorithm, where n is the number of states and m is the number of transitions.
    (2) We present a game based algorithm for alternating simulation that requires
    O(m2)-time as compared to the previous known O((n·m)2)-time algorithm, where n
    is the number of states and m is the size of transition relation. (3) We present
    an iterative algorithm for alternating simulation that matches the time complexity
    of the game based algorithm, but is more space efficient than the game based algorithm.
    © Krishnendu Chatterjee, Siddhesh Chaubal, and Pritish Kamath.'
alternative_title:
- LIPIcs
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Siddhesh
  full_name: Chaubal, Siddhesh
  last_name: Chaubal
- first_name: Pritish
  full_name: Kamath, Pritish
  last_name: Kamath
citation:
  ama: 'Chatterjee K, Chaubal S, Kamath P. Faster algorithms for alternating refinement
    relations. In: Vol 16. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2012:167-182.
    doi:<a href="https://doi.org/10.4230/LIPIcs.CSL.2012.167">10.4230/LIPIcs.CSL.2012.167</a>'
  apa: 'Chatterjee, K., Chaubal, S., &#38; Kamath, P. (2012). Faster algorithms for
    alternating refinement relations (Vol. 16, pp. 167–182). Presented at the EACSL:
    European Association for Computer Science Logic, Fontainebleau, France: Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.CSL.2012.167">https://doi.org/10.4230/LIPIcs.CSL.2012.167</a>'
  chicago: Chatterjee, Krishnendu, Siddhesh Chaubal, and Pritish Kamath. “Faster Algorithms
    for Alternating Refinement Relations,” 16:167–82. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2012. <a href="https://doi.org/10.4230/LIPIcs.CSL.2012.167">https://doi.org/10.4230/LIPIcs.CSL.2012.167</a>.
  ieee: 'K. Chatterjee, S. Chaubal, and P. Kamath, “Faster algorithms for alternating
    refinement relations,” presented at the EACSL: European Association for Computer
    Science Logic, Fontainebleau, France, 2012, vol. 16, pp. 167–182.'
  ista: 'Chatterjee K, Chaubal S, Kamath P. 2012. Faster algorithms for alternating
    refinement relations. EACSL: European Association for Computer Science Logic,
    LIPIcs, vol. 16, 167–182.'
  mla: Chatterjee, Krishnendu, et al. <i>Faster Algorithms for Alternating Refinement
    Relations</i>. Vol. 16, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012,
    pp. 167–82, doi:<a href="https://doi.org/10.4230/LIPIcs.CSL.2012.167">10.4230/LIPIcs.CSL.2012.167</a>.
  short: K. Chatterjee, S. Chaubal, P. Kamath, in:, Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2012, pp. 167–182.
conference:
  end_date: 2012-09-06
  location: Fontainebleau, France
  name: 'EACSL: European Association for Computer Science Logic'
  start_date: 2012-09-03
date_created: 2018-12-11T11:46:48Z
date_published: 2012-09-01T00:00:00Z
date_updated: 2023-02-23T12:23:32Z
day: '01'
ddc:
- '004'
department:
- _id: KrCh
doi: 10.4230/LIPIcs.CSL.2012.167
ec_funded: 1
file:
- access_level: open_access
  checksum: f1b0dd99240800db2d7dbf9b5131fe5e
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:08:50Z
  date_updated: 2020-07-14T12:46:35Z
  file_id: '4712'
  file_name: IST-2018-943-v1+1_2012_Chatterjee_Faster_Algorithms.pdf
  file_size: 471236
  relation: main_file
file_date_updated: 2020-07-14T12:46:35Z
has_accepted_license: '1'
intvolume: '        16'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '09'
oa: 1
oa_version: Published Version
page: 167 - 182
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '7323'
pubrep_id: '943'
quality_controlled: '1'
related_material:
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    status: public
scopus_import: 1
status: public
title: Faster algorithms for alternating refinement relations
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  short: CC BY-NC-ND (4.0)
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2012'
...
---
_id: '498'
abstract:
- lang: eng
  text: Understanding patterns and correlates of local adaptation in heterogeneous
    landscapes can provide important information in the selection of appropriate seed
    sources for restoration. We assessed the extent of local adaptation of fitness
    components in 12 population pairs of the perennial herb Rutidosis leptorrhynchoides
    (Asteraceae) and examined whether spatial scale (0.7-600 km), environmental distance,
    quantitative (QST) and neutral (FST) genetic differentiation, and size of the
    local and foreign populations could predict patterns of adaptive differentiation.
    Local adaptation varied among populations and fitness components. Including all
    population pairs, local adaptation was observed for seedling survival, but not
    for biomass, while foreign genotype advantage was observed for reproduction (number
    of inflorescences). Among population pairs, local adaptation increased with QST
    and local population size for biomass. QST was associated with environmental distance,
    suggesting ecological selection for phenotypic divergence. However, low FST and
    variation in population structure in small populations demonstrates the interaction
    of gene flow and drift in constraining local adaptation in R. leptorrhynchoides.
    Our study indicates that for species in heterogeneous landscapes, collecting seed
    from large populations from similar environments to candidate sites is likely
    to provide the most appropriate seed sources for restoration.
acknowledgement: "We thank Graham Pickup, David Steer, Linda Broadhurst, Lan Li and
  Carole Elliott for technical assistance. The New\r\nSouth Wales Department of Environment
  and Climate Change, ACT Parks, Conservation and Lands and the\r\nDepartment of Sustainability
  and Environment in Victoria provided permits for seed and soil collection. We thank\r\nSpencer
  C. H. Barrett for comments that improved the quality of the manuscript.\r\n"
author:
- first_name: Melinda
  full_name: Pickup, Melinda
  id: 2C78037E-F248-11E8-B48F-1D18A9856A87
  last_name: Pickup
  orcid: 0000-0001-6118-0541
- first_name: David
  full_name: Field, David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
- first_name: David
  full_name: Rowell, David
  last_name: Rowell
- first_name: Andrew
  full_name: Young, Andrew
  last_name: Young
citation:
  ama: 'Pickup M, Field D, Rowell D, Young A. Predicting local adaptation in fragmented
    plant populations: Implications for restoration genetics. <i>Evolutionary Applications</i>.
    2012;5(8):913-924. doi:<a href="https://doi.org/10.1111/j.1752-4571.2012.00284.x">10.1111/j.1752-4571.2012.00284.x</a>'
  apa: 'Pickup, M., Field, D., Rowell, D., &#38; Young, A. (2012). Predicting local
    adaptation in fragmented plant populations: Implications for restoration genetics.
    <i>Evolutionary Applications</i>. Wiley-Blackwell. <a href="https://doi.org/10.1111/j.1752-4571.2012.00284.x">https://doi.org/10.1111/j.1752-4571.2012.00284.x</a>'
  chicago: 'Pickup, Melinda, David Field, David Rowell, and Andrew Young. “Predicting
    Local Adaptation in Fragmented Plant Populations: Implications for Restoration
    Genetics.” <i>Evolutionary Applications</i>. Wiley-Blackwell, 2012. <a href="https://doi.org/10.1111/j.1752-4571.2012.00284.x">https://doi.org/10.1111/j.1752-4571.2012.00284.x</a>.'
  ieee: 'M. Pickup, D. Field, D. Rowell, and A. Young, “Predicting local adaptation
    in fragmented plant populations: Implications for restoration genetics,” <i>Evolutionary
    Applications</i>, vol. 5, no. 8. Wiley-Blackwell, pp. 913–924, 2012.'
  ista: 'Pickup M, Field D, Rowell D, Young A. 2012. Predicting local adaptation in
    fragmented plant populations: Implications for restoration genetics. Evolutionary
    Applications. 5(8), 913–924.'
  mla: 'Pickup, Melinda, et al. “Predicting Local Adaptation in Fragmented Plant Populations:
    Implications for Restoration Genetics.” <i>Evolutionary Applications</i>, vol.
    5, no. 8, Wiley-Blackwell, 2012, pp. 913–24, doi:<a href="https://doi.org/10.1111/j.1752-4571.2012.00284.x">10.1111/j.1752-4571.2012.00284.x</a>.'
  short: M. Pickup, D. Field, D. Rowell, A. Young, Evolutionary Applications 5 (2012)
    913–924.
date_created: 2018-12-11T11:46:48Z
date_published: 2012-12-01T00:00:00Z
date_updated: 2021-01-12T08:01:06Z
day: '01'
ddc:
- '576'
department:
- _id: NiBa
doi: 10.1111/j.1752-4571.2012.00284.x
file:
- access_level: open_access
  checksum: 233007138606aca5a2f75f7ae1742f43
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  creator: system
  date_created: 2018-12-12T10:10:33Z
  date_updated: 2020-07-14T12:46:35Z
  file_id: '4821'
  file_name: IST-2018-942-v1+1_Pickup_et_al-2012-Evolutionary_Applications.pdf
  file_size: 396136
  relation: main_file
file_date_updated: 2020-07-14T12:46:35Z
has_accepted_license: '1'
intvolume: '         5'
issue: '8'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '12'
oa: 1
oa_version: Published Version
page: 913 - 924
publication: Evolutionary Applications
publication_status: published
publisher: Wiley-Blackwell
publist_id: '7322'
pubrep_id: '942'
quality_controlled: '1'
status: public
title: 'Predicting local adaptation in fragmented plant populations: Implications
  for restoration genetics'
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2012'
...
---
_id: '506'
article_processing_charge: No
article_type: original
author:
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: 'Sixt MK. Cell migration: Fibroblasts find a new way to get ahead. <i>Journal
    of Cell Biology</i>. 2012;197(3):347-349. doi:<a href="https://doi.org/10.1083/jcb.201204039">10.1083/jcb.201204039</a>'
  apa: 'Sixt, M. K. (2012). Cell migration: Fibroblasts find a new way to get ahead.
    <i>Journal of Cell Biology</i>. Rockefeller University Press. <a href="https://doi.org/10.1083/jcb.201204039">https://doi.org/10.1083/jcb.201204039</a>'
  chicago: 'Sixt, Michael K. “Cell Migration: Fibroblasts Find a New Way to Get Ahead.”
    <i>Journal of Cell Biology</i>. Rockefeller University Press, 2012. <a href="https://doi.org/10.1083/jcb.201204039">https://doi.org/10.1083/jcb.201204039</a>.'
  ieee: 'M. K. Sixt, “Cell migration: Fibroblasts find a new way to get ahead,” <i>Journal
    of Cell Biology</i>, vol. 197, no. 3. Rockefeller University Press, pp. 347–349,
    2012.'
  ista: 'Sixt MK. 2012. Cell migration: Fibroblasts find a new way to get ahead. Journal
    of Cell Biology. 197(3), 347–349.'
  mla: 'Sixt, Michael K. “Cell Migration: Fibroblasts Find a New Way to Get Ahead.”
    <i>Journal of Cell Biology</i>, vol. 197, no. 3, Rockefeller University Press,
    2012, pp. 347–49, doi:<a href="https://doi.org/10.1083/jcb.201204039">10.1083/jcb.201204039</a>.'
  short: M.K. Sixt, Journal of Cell Biology 197 (2012) 347–349.
date_created: 2018-12-11T11:46:51Z
date_published: 2012-04-30T00:00:00Z
date_updated: 2021-01-12T08:01:11Z
day: '30'
ddc:
- '570'
department:
- _id: MiSi
doi: 10.1083/jcb.201204039
file:
- access_level: open_access
  checksum: 45c02be33ebd99fc3077d60b9c90bdfa
  content_type: application/pdf
  creator: kschuh
  date_created: 2019-02-12T09:03:09Z
  date_updated: 2020-07-14T12:46:36Z
  file_id: '5957'
  file_name: 2012_CellBiology_Sixt.pdf
  file_size: 986566
  relation: main_file
file_date_updated: 2020-07-14T12:46:36Z
has_accepted_license: '1'
intvolume: '       197'
issue: '3'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '04'
oa: 1
oa_version: Published Version
page: 347 - 349
publication: Journal of Cell Biology
publication_status: published
publisher: Rockefeller University Press
publist_id: '7314'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Cell migration: Fibroblasts find a new way to get ahead'
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 197
year: '2012'
...
---
_id: '5377'
abstract:
- lang: eng
  text: 'Two-player games on graphs are central in many problems in formal verification
    and program analysis such as synthesis and verification of open systems. In this
    work we consider solving recursive game graphs (or pushdown game graphs) that
    can model the control flow of sequential programs with recursion. While pushdown
    games have been studied before with qualitative objectives, such as reachability
    and ω-regular objectives, in this work we study for the first time such games
    with the most well-studied quantitative objective, namely, mean-payoff objectives.
    In pushdown games two types of strategies are relevant: (1) global strategies,
    that depend on the entire global history; and (2) modular strategies, that have
    only local memory and thus do not depend on the context of invocation, but only
    on the history of the current invocation of the module. Our main results are as
    follows: (1) One-player pushdown games with mean-payoff objectives under global
    strategies are decidable in polynomial time. (2) Two- player pushdown games with
    mean-payoff objectives under global strategies are undecidable. (3) One-player
    pushdown games with mean-payoff objectives under modular strategies are NP- hard.
    (4) Two-player pushdown games with mean-payoff objectives under modular strategies
    can be solved in NP (i.e., both one-player and two-player pushdown games with
    mean-payoff objectives under modular strategies are NP-complete). We also establish
    the optimal strategy complexity showing that global strategies for mean-payoff
    objectives require infinite memory even in one-player pushdown games; and memoryless
    modular strategies are sufficient in two- player pushdown games. Finally we also
    show that all the problems have the same complexity if the stack boundedness condition
    is added, where along with the mean-payoff objective the player must also ensure
    that the stack height is bounded.'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Yaron
  full_name: Velner, Yaron
  last_name: Velner
citation:
  ama: Chatterjee K, Velner Y. <i>Mean-Payoff Pushdown Games</i>. IST Austria; 2012.
    doi:<a href="https://doi.org/10.15479/AT:IST-2012-0002">10.15479/AT:IST-2012-0002</a>
  apa: Chatterjee, K., &#38; Velner, Y. (2012). <i>Mean-payoff pushdown games</i>.
    IST Austria. <a href="https://doi.org/10.15479/AT:IST-2012-0002">https://doi.org/10.15479/AT:IST-2012-0002</a>
  chicago: Chatterjee, Krishnendu, and Yaron Velner. <i>Mean-Payoff Pushdown Games</i>.
    IST Austria, 2012. <a href="https://doi.org/10.15479/AT:IST-2012-0002">https://doi.org/10.15479/AT:IST-2012-0002</a>.
  ieee: K. Chatterjee and Y. Velner, <i>Mean-payoff pushdown games</i>. IST Austria,
    2012.
  ista: Chatterjee K, Velner Y. 2012. Mean-payoff pushdown games, IST Austria, 33p.
  mla: Chatterjee, Krishnendu, and Yaron Velner. <i>Mean-Payoff Pushdown Games</i>.
    IST Austria, 2012, doi:<a href="https://doi.org/10.15479/AT:IST-2012-0002">10.15479/AT:IST-2012-0002</a>.
  short: K. Chatterjee, Y. Velner, Mean-Payoff Pushdown Games, IST Austria, 2012.
date_created: 2018-12-12T11:38:59Z
date_published: 2012-07-02T00:00:00Z
date_updated: 2023-02-23T11:05:50Z
day: '02'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2012-0002
file:
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  date_created: 2018-12-12T11:54:00Z
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  file_id: '5522'
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file_date_updated: 2020-07-14T12:46:38Z
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language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '33'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '10'
related_material:
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  - id: '2956'
    relation: later_version
    status: public
status: public
title: Mean-payoff pushdown games
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2012'
...
---
_id: '5378'
abstract:
- lang: eng
  text: 'One central issue in the formal design and analysis of reactive systems is
    the notion of refinement that asks whether all behaviors of the implementation
    is allowed by the specification. The local interpretation of behavior leads to
    the notion of simulation. Alternating transition systems (ATSs) provide a general
    model for composite reactive systems, and the simulation relation for ATSs is
    known as alternating simulation. The simulation relation for fair transition systems
    is called fair simulation. In this work our main contributions are as follows:
    (1) We present an improved algorithm for fair simulation with Büchi fairness constraints;
    our algorithm requires O(n3 · m) time as compared to the previous known O(n6)-time
    algorithm, where n is the number of states and m is the number of transitions.
    (2) We present a game based algorithm for alternating simulation that requires
    O(m2)-time as compared to the previous known O((n · m)2)-time algorithm, where
    n is the number of states and m is the size of transition relation. (3) We present
    an iterative algorithm for alternating simulation that matches the time complexity
    of the game based algorithm, but is more space efficient than the game based algorithm.'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Siddhesh
  full_name: Chaubal, Siddhesh
  last_name: Chaubal
- first_name: Pritish
  full_name: Kamath, Pritish
  last_name: Kamath
citation:
  ama: Chatterjee K, Chaubal S, Kamath P. <i>Faster Algorithms for Alternating Refinement
    Relations</i>. IST Austria; 2012. doi:<a href="https://doi.org/10.15479/AT:IST-2012-0001">10.15479/AT:IST-2012-0001</a>
  apa: Chatterjee, K., Chaubal, S., &#38; Kamath, P. (2012). <i>Faster algorithms
    for alternating refinement relations</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2012-0001">https://doi.org/10.15479/AT:IST-2012-0001</a>
  chicago: Chatterjee, Krishnendu, Siddhesh Chaubal, and Pritish Kamath. <i>Faster
    Algorithms for Alternating Refinement Relations</i>. IST Austria, 2012. <a href="https://doi.org/10.15479/AT:IST-2012-0001">https://doi.org/10.15479/AT:IST-2012-0001</a>.
  ieee: K. Chatterjee, S. Chaubal, and P. Kamath, <i>Faster algorithms for alternating
    refinement relations</i>. IST Austria, 2012.
  ista: Chatterjee K, Chaubal S, Kamath P. 2012. Faster algorithms for alternating
    refinement relations, IST Austria, 21p.
  mla: Chatterjee, Krishnendu, et al. <i>Faster Algorithms for Alternating Refinement
    Relations</i>. IST Austria, 2012, doi:<a href="https://doi.org/10.15479/AT:IST-2012-0001">10.15479/AT:IST-2012-0001</a>.
  short: K. Chatterjee, S. Chaubal, P. Kamath, Faster Algorithms for Alternating Refinement
    Relations, IST Austria, 2012.
date_created: 2018-12-12T11:38:59Z
date_published: 2012-07-04T00:00:00Z
date_updated: 2023-02-23T12:21:38Z
day: '04'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2012-0001
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file_date_updated: 2020-07-14T12:46:39Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '21'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '14'
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    status: public
status: public
title: Faster algorithms for alternating refinement relations
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2012'
...
---
_id: '2073'
abstract:
- lang: eng
  text: 'Background: Drosophila albomicans is a unique model organism for studying
    both sex chromosome and B chromosome evolution. A pair of its autosomes comprising
    roughly 40% of the whole genome has fused to the ancient X and Y chromosomes only
    about 0.12 million years ago, thereby creating the youngest and most gene-rich
    neo-sex system reported to date. This species also possesses recently derived
    B chromosomes that show non-Mendelian inheritance and significantly influence
    fertility.Methods: We sequenced male flies with B chromosomes at 124.5-fold genome
    coverage using next-generation sequencing. To characterize neo-Y specific changes
    and B chromosome sequences, we also sequenced inbred female flies derived from
    the same strain but without B''s at 28.5-fold.Results: We assembled a female genome
    and placed 53% of the sequence and 85% of the annotated proteins into specific
    chromosomes, by comparison with the 12 Drosophila genomes. Despite its very recent
    origin, the non-recombining neo-Y chromosome shows various signs of degeneration,
    including a significant enrichment of non-functional genes compared to the neo-X,
    and an excess of tandem duplications relative to other chromosomes. We also characterized
    a B-chromosome linked scaffold that contains an actively transcribed unit and
    shows sequence similarity to the subcentromeric regions of both the ancient X
    and the neo-X chromosome.Conclusions: Our results provide novel insights into
    the very early stages of sex chromosome evolution and B chromosome origination,
    and suggest an unprecedented connection between the births of these two systems
    in D. albomicans.'
author:
- first_name: Qi
  full_name: Zhou, Qi
  last_name: Zhou
- first_name: Hongmei
  full_name: Zhu, Hongmei
  last_name: Zhu
- first_name: Quanfei
  full_name: Huang, Quanfei
  last_name: Huang
- first_name: Li
  full_name: Zhao, Li
  last_name: Zhao
- first_name: Guo
  full_name: Zhang, Guo J
  last_name: Zhang
- first_name: Scott
  full_name: Roy, Scott W
  last_name: Roy
- first_name: Beatriz
  full_name: Beatriz Vicoso
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
- first_name: Zhaolin
  full_name: Xuan, Zhaolin
  last_name: Xuan
- first_name: Jue
  full_name: Ruan, Jue
  last_name: Ruan
- first_name: Yue
  full_name: Zhang, Yue
  last_name: Zhang
- first_name: Ruoping
  full_name: Zhao, Ruoping
  last_name: Zhao
- first_name: Chen
  full_name: Ye, Chen
  last_name: Ye
- first_name: Xiuqing
  full_name: Zhang, Xiuqing
  last_name: Zhang
- first_name: Jùn
  full_name: Wang, Jùn
  last_name: Wang
- first_name: Wen
  full_name: Wang, Wen
  last_name: Wang
- first_name: Doris
  full_name: Bachtrog, Doris
  last_name: Bachtrog
citation:
  ama: Zhou Q, Zhu H, Huang Q, et al. Deciphering neo-sex and B chromosome evolution
    by the draft genome of Drosophila albomicans. <i>BMC Genomics</i>. 2012;13(1).
    doi:<a href="https://doi.org/10.1186/1471-2164-13-109">10.1186/1471-2164-13-109</a>
  apa: Zhou, Q., Zhu, H., Huang, Q., Zhao, L., Zhang, G., Roy, S., … Bachtrog, D.
    (2012). Deciphering neo-sex and B chromosome evolution by the draft genome of
    Drosophila albomicans. <i>BMC Genomics</i>. BioMed Central. <a href="https://doi.org/10.1186/1471-2164-13-109">https://doi.org/10.1186/1471-2164-13-109</a>
  chicago: Zhou, Qi, Hongmei Zhu, Quanfei Huang, Li Zhao, Guo Zhang, Scott Roy, Beatriz
    Vicoso, et al. “Deciphering Neo-Sex and B Chromosome Evolution by the Draft Genome
    of Drosophila Albomicans.” <i>BMC Genomics</i>. BioMed Central, 2012. <a href="https://doi.org/10.1186/1471-2164-13-109">https://doi.org/10.1186/1471-2164-13-109</a>.
  ieee: Q. Zhou <i>et al.</i>, “Deciphering neo-sex and B chromosome evolution by
    the draft genome of Drosophila albomicans,” <i>BMC Genomics</i>, vol. 13, no.
    1. BioMed Central, 2012.
  ista: Zhou Q, Zhu H, Huang Q, Zhao L, Zhang G, Roy S, Vicoso B, Xuan Z, Ruan J,
    Zhang Y, Zhao R, Ye C, Zhang X, Wang J, Wang W, Bachtrog D. 2012. Deciphering
    neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans.
    BMC Genomics. 13(1).
  mla: Zhou, Qi, et al. “Deciphering Neo-Sex and B Chromosome Evolution by the Draft
    Genome of Drosophila Albomicans.” <i>BMC Genomics</i>, vol. 13, no. 1, BioMed
    Central, 2012, doi:<a href="https://doi.org/10.1186/1471-2164-13-109">10.1186/1471-2164-13-109</a>.
  short: Q. Zhou, H. Zhu, Q. Huang, L. Zhao, G. Zhang, S. Roy, B. Vicoso, Z. Xuan,
    J. Ruan, Y. Zhang, R. Zhao, C. Ye, X. Zhang, J. Wang, W. Wang, D. Bachtrog, BMC
    Genomics 13 (2012).
date_created: 2018-12-11T11:55:33Z
date_published: 2012-03-22T00:00:00Z
date_updated: 2021-01-12T06:55:08Z
day: '22'
doi: 10.1186/1471-2164-13-109
extern: 1
intvolume: '        13'
issue: '1'
month: '03'
publication: BMC Genomics
publication_status: published
publisher: BioMed Central
publist_id: '4965'
quality_controlled: 0
status: public
title: Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila
  albomicans
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
volume: 13
year: '2012'
...
---
_id: '2079'
abstract:
- lang: eng
  text: We introduce an algorithm and representation for fabricating 3D shape abstractions
    using mutually intersecting planar cut-outs. The planes have prefabricated slits
    at their intersections and are assembled by sliding them together. Often such
    abstractions are used as a sculptural art form or in architecture and are colloquially
    called ‘cardboard sculptures’. Based on an analysis of construction rules, we
    propose an extended binary space partitioning tree as an efficient representation
    of such cardboard models which allows us to quickly evaluate the feasibility of
    newly added planar elements. The complexity of insertion order quickly increases
    with the number of planar elements and manual analysis becomes intractable. We
    provide tools for generating cardboard sculptures with guaranteed constructibility.
    In combination with a simple optimization and sampling strategy for new elements,
    planar shape abstraction models can be designed by iteratively adding elements.
    As an output, we obtain a fabrication plan that can be printed or sent to a laser
    cutter. We demonstrate the complete process by designing and fabricating cardboard
    models of various well-known 3D shapes.
author:
- first_name: Kristian
  full_name: Hildebrand, Kristian
  last_name: Hildebrand
- first_name: Bernd
  full_name: Bernd Bickel
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Marc
  full_name: Alexa, Marc
  last_name: Alexa
citation:
  ama: 'Hildebrand K, Bickel B, Alexa M. crdbrd: Shape fabrication by sliding planar
    slices. <i>Computer Graphics Forum</i>. 2012;31(2pt3):583-592. doi:<a href="https://doi.org/10.1111/j.1467-8659.2012.03037.x">10.1111/j.1467-8659.2012.03037.x</a>'
  apa: 'Hildebrand, K., Bickel, B., &#38; Alexa, M. (2012). crdbrd: Shape fabrication
    by sliding planar slices. <i>Computer Graphics Forum</i>. Wiley-Blackwell. <a
    href="https://doi.org/10.1111/j.1467-8659.2012.03037.x">https://doi.org/10.1111/j.1467-8659.2012.03037.x</a>'
  chicago: 'Hildebrand, Kristian, Bernd Bickel, and Marc Alexa. “Crdbrd: Shape Fabrication
    by Sliding Planar Slices.” <i>Computer Graphics Forum</i>. Wiley-Blackwell, 2012.
    <a href="https://doi.org/10.1111/j.1467-8659.2012.03037.x">https://doi.org/10.1111/j.1467-8659.2012.03037.x</a>.'
  ieee: 'K. Hildebrand, B. Bickel, and M. Alexa, “crdbrd: Shape fabrication by sliding
    planar slices,” <i>Computer Graphics Forum</i>, vol. 31, no. 2pt3. Wiley-Blackwell,
    pp. 583–592, 2012.'
  ista: 'Hildebrand K, Bickel B, Alexa M. 2012. crdbrd: Shape fabrication by sliding
    planar slices. Computer Graphics Forum. 31(2pt3), 583–592.'
  mla: 'Hildebrand, Kristian, et al. “Crdbrd: Shape Fabrication by Sliding Planar
    Slices.” <i>Computer Graphics Forum</i>, vol. 31, no. 2pt3, Wiley-Blackwell, 2012,
    pp. 583–92, doi:<a href="https://doi.org/10.1111/j.1467-8659.2012.03037.x">10.1111/j.1467-8659.2012.03037.x</a>.'
  short: K. Hildebrand, B. Bickel, M. Alexa, Computer Graphics Forum 31 (2012) 583–592.
date_created: 2018-12-11T11:55:35Z
date_published: 2012-05-01T00:00:00Z
date_updated: 2021-01-12T06:55:10Z
day: '01'
doi: 10.1111/j.1467-8659.2012.03037.x
extern: 1
intvolume: '        31'
issue: 2pt3
month: '05'
page: 583 - 592
publication: Computer Graphics Forum
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4959'
quality_controlled: 0
status: public
title: 'crdbrd: Shape fabrication by sliding planar slices'
type: journal_article
volume: 31
year: '2012'
...
---
_id: '2101'
abstract:
- lang: eng
  text: 'Articulated deformable characters are widespread in computer animation. Unfortunately,
    we lack methods for their automatic fabrication using modern additive manufacturing
    (AM) technologies. We propose a method that takes a skinned mesh as input, then
    estimates a fabricatable single-material model that approximates the 3D kinematics
    of the corresponding virtual articulated character in a piecewise linear manner.
    We first extract a set of potential joint locations. From this set, together with
    optional, user-specified range constraints, we then estimate mechanical friction
    joints that satisfy inter-joint non-penetration and other fabrication constraints.
    To avoid brittle joint designs, we place joint centers on an approximate medial
    axis representation of the input geometry, and maximize each joint''s minimal
    cross-sectional area. We provide several demonstrations, manufactured as single,
    assembled pieces using 3D printers. '
acknowledgement: This work was partially supported by NSF grant IIS-1116619. Doug
  James acknowledges support from Pixar and a fellowship from the John Simon Guggenheim
  Memorial Foundation
author:
- first_name: Moritz
  full_name: Bac̈her, Moritz
  last_name: Bac̈Her
- first_name: Bernd
  full_name: Bernd Bickel
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Doug
  full_name: James, Doug L
  last_name: James
- first_name: Hanspeter
  full_name: Pfister, Hanspeter
  last_name: Pfister
citation:
  ama: Bac̈Her M, Bickel B, James D, Pfister H. Fabricating articulated characters
    from skinned meshes. <i>ACM Transactions on Graphics</i>. 2012;31(4). doi:<a href="https://doi.org/10.1145/2185520.2185543">10.1145/2185520.2185543</a>
  apa: Bac̈Her, M., Bickel, B., James, D., &#38; Pfister, H. (2012). Fabricating articulated
    characters from skinned meshes. <i>ACM Transactions on Graphics</i>. ACM. <a href="https://doi.org/10.1145/2185520.2185543">https://doi.org/10.1145/2185520.2185543</a>
  chicago: Bac̈Her, Moritz, Bernd Bickel, Doug James, and Hanspeter Pfister. “Fabricating
    Articulated Characters from Skinned Meshes.” <i>ACM Transactions on Graphics</i>.
    ACM, 2012. <a href="https://doi.org/10.1145/2185520.2185543">https://doi.org/10.1145/2185520.2185543</a>.
  ieee: M. Bac̈Her, B. Bickel, D. James, and H. Pfister, “Fabricating articulated
    characters from skinned meshes,” <i>ACM Transactions on Graphics</i>, vol. 31,
    no. 4. ACM, 2012.
  ista: Bac̈Her M, Bickel B, James D, Pfister H. 2012. Fabricating articulated characters
    from skinned meshes. ACM Transactions on Graphics. 31(4).
  mla: Bac̈Her, Moritz, et al. “Fabricating Articulated Characters from Skinned Meshes.”
    <i>ACM Transactions on Graphics</i>, vol. 31, no. 4, ACM, 2012, doi:<a href="https://doi.org/10.1145/2185520.2185543">10.1145/2185520.2185543</a>.
  short: M. Bac̈Her, B. Bickel, D. James, H. Pfister, ACM Transactions on Graphics
    31 (2012).
date_created: 2018-12-11T11:55:43Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2021-01-12T06:55:19Z
day: '01'
doi: 10.1145/2185520.2185543
extern: 1
intvolume: '        31'
issue: '4'
month: '01'
publication: ACM Transactions on Graphics
publication_status: published
publisher: ACM
publist_id: '4933'
quality_controlled: 0
status: public
title: Fabricating articulated characters from skinned meshes
type: journal_article
volume: 31
year: '2012'
...
---
_id: '2102'
abstract:
- lang: eng
  text: 'We propose a complete process for designing, simulating, and fabricating
    synthetic skin for an animatronics character that mimics the face of a given subject
    and its expressions. The process starts with measuring the elastic properties
    of a material used to manufacture synthetic soft tissue. Given these measurements
    we use physicsbased simulation to predict the behavior of a face when it is driven
    by the underlying robotic actuation. Next, we capture 3D facial expressions for
    a given target subject. As the key component of our process, we present a novel
    optimization scheme that determines the shape of the synthetic skin as well as
    the actuation parameters that provide the best match to the target expressions.
    We demonstrate this computational skin design by physically cloning a real human
    face onto an animatronics figure. '
acknowledgement: This work was supported in part by the NCCR Co-Me of the Swiss NSF
author:
- first_name: Bernd
  full_name: Bernd Bickel
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Peter
  full_name: Kaufmann, Peter
  last_name: Kaufmann
- first_name: Mélina
  full_name: Skouras, Mélina
  last_name: Skouras
- first_name: Bernhard
  full_name: Thomaszewski, Bernhard
  last_name: Thomaszewski
- first_name: Derek
  full_name: Bradley, Derek J
  last_name: Bradley
- first_name: Thabo
  full_name: Beeler, Thabo
  last_name: Beeler
- first_name: Philip
  full_name: Jackson, Philip V
  last_name: Jackson
- first_name: Steve
  full_name: Marschner, Steve
  last_name: Marschner
- first_name: Wojciech
  full_name: Matusik, Wojciech
  last_name: Matusik
- first_name: Markus
  full_name: Groß, Markus S
  last_name: Groß
citation:
  ama: Bickel B, Kaufmann P, Skouras M, et al. Physical face cloning. <i>ACM Transactions
    on Graphics</i>. 2012;31(4). doi:<a href="https://doi.org/10.1145/2185520.2185614">10.1145/2185520.2185614</a>
  apa: Bickel, B., Kaufmann, P., Skouras, M., Thomaszewski, B., Bradley, D., Beeler,
    T., … Groß, M. (2012). Physical face cloning. <i>ACM Transactions on Graphics</i>.
    ACM. <a href="https://doi.org/10.1145/2185520.2185614">https://doi.org/10.1145/2185520.2185614</a>
  chicago: Bickel, Bernd, Peter Kaufmann, Mélina Skouras, Bernhard Thomaszewski, Derek
    Bradley, Thabo Beeler, Philip Jackson, Steve Marschner, Wojciech Matusik, and
    Markus Groß. “Physical Face Cloning.” <i>ACM Transactions on Graphics</i>. ACM,
    2012. <a href="https://doi.org/10.1145/2185520.2185614">https://doi.org/10.1145/2185520.2185614</a>.
  ieee: B. Bickel <i>et al.</i>, “Physical face cloning,” <i>ACM Transactions on Graphics</i>,
    vol. 31, no. 4. ACM, 2012.
  ista: Bickel B, Kaufmann P, Skouras M, Thomaszewski B, Bradley D, Beeler T, Jackson
    P, Marschner S, Matusik W, Groß M. 2012. Physical face cloning. ACM Transactions
    on Graphics. 31(4).
  mla: Bickel, Bernd, et al. “Physical Face Cloning.” <i>ACM Transactions on Graphics</i>,
    vol. 31, no. 4, ACM, 2012, doi:<a href="https://doi.org/10.1145/2185520.2185614">10.1145/2185520.2185614</a>.
  short: B. Bickel, P. Kaufmann, M. Skouras, B. Thomaszewski, D. Bradley, T. Beeler,
    P. Jackson, S. Marschner, W. Matusik, M. Groß, ACM Transactions on Graphics 31
    (2012).
date_created: 2018-12-11T11:55:43Z
date_published: 2012-07-04T00:00:00Z
date_updated: 2021-01-12T06:55:19Z
day: '04'
doi: 10.1145/2185520.2185614
extern: 1
intvolume: '        31'
issue: '4'
month: '07'
publication: ACM Transactions on Graphics
publication_status: published
publisher: ACM
publist_id: '4931'
quality_controlled: 0
status: public
title: Physical face cloning
type: journal_article
volume: 31
year: '2012'
...
---
_id: '2103'
abstract:
- lang: eng
  text: Although facial hair plays an important role in individual expression, facial-hair
    reconstruction is not addressed by current facecapture systems. Our research addresses
    this limitation with an algorithm that treats hair and skin surface capture together
    in a coupled fashion so that a high-quality representation of hair fibers as well
    as the underlying skin surface can be reconstructed. We propose a passive, camera-based
    system that is robust against arbitrary motion since all data is acquired within
    the time period of a single exposure. Our reconstruction algorithm detects and
    traces hairs in the captured images and reconstructs them in 3D using a multiview
    stereo approach. Our coupled skin-reconstruction algorithm uses information about
    the detected hairs to deliver a skin surface that lies underneath all hairs irrespective
    of occlusions. In dense regions like eyebrows, we employ a hair-synthesis method
    to create hair fibers that plausibly match the image data. We demonstrate our
    scanning system on a number of individuals and show that it can successfully reconstruct
    a variety of facial-hair styles together with the underlying skin surface.
author:
- first_name: Thabo
  full_name: Beeler, Thabo
  last_name: Beeler
- first_name: Bernd
  full_name: Bernd Bickel
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Gioacchino
  full_name: Noris, Gioacchino
  last_name: Noris
- first_name: Paul
  full_name: Beardsley, Paul A
  last_name: Beardsley
- first_name: Steve
  full_name: Marschner, Steve
  last_name: Marschner
- first_name: Robert
  full_name: Sumner, Robert W
  last_name: Sumner
- first_name: Markus
  full_name: Groß, Markus S
  last_name: Groß
citation:
  ama: Beeler T, Bickel B, Noris G, et al. Coupled 3D reconstruction of sparse facial
    hair and skin. <i>ACM Transactions on Graphics</i>. 2012;31(4). doi:<a href="https://doi.org/10.1145/2185520.2185613">10.1145/2185520.2185613</a>
  apa: Beeler, T., Bickel, B., Noris, G., Beardsley, P., Marschner, S., Sumner, R.,
    &#38; Groß, M. (2012). Coupled 3D reconstruction of sparse facial hair and skin.
    <i>ACM Transactions on Graphics</i>. ACM. <a href="https://doi.org/10.1145/2185520.2185613">https://doi.org/10.1145/2185520.2185613</a>
  chicago: Beeler, Thabo, Bernd Bickel, Gioacchino Noris, Paul Beardsley, Steve Marschner,
    Robert Sumner, and Markus Groß. “Coupled 3D Reconstruction of Sparse Facial Hair
    and Skin.” <i>ACM Transactions on Graphics</i>. ACM, 2012. <a href="https://doi.org/10.1145/2185520.2185613">https://doi.org/10.1145/2185520.2185613</a>.
  ieee: T. Beeler <i>et al.</i>, “Coupled 3D reconstruction of sparse facial hair
    and skin,” <i>ACM Transactions on Graphics</i>, vol. 31, no. 4. ACM, 2012.
  ista: Beeler T, Bickel B, Noris G, Beardsley P, Marschner S, Sumner R, Groß M. 2012.
    Coupled 3D reconstruction of sparse facial hair and skin. ACM Transactions on
    Graphics. 31(4).
  mla: Beeler, Thabo, et al. “Coupled 3D Reconstruction of Sparse Facial Hair and
    Skin.” <i>ACM Transactions on Graphics</i>, vol. 31, no. 4, ACM, 2012, doi:<a
    href="https://doi.org/10.1145/2185520.2185613">10.1145/2185520.2185613</a>.
  short: T. Beeler, B. Bickel, G. Noris, P. Beardsley, S. Marschner, R. Sumner, M.
    Groß, ACM Transactions on Graphics 31 (2012).
date_created: 2018-12-11T11:55:44Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2021-01-12T06:55:20Z
day: '01'
doi: 10.1145/2185520.2185613
extern: 1
intvolume: '        31'
issue: '4'
month: '01'
publication: ACM Transactions on Graphics
publication_status: published
publisher: ACM
publist_id: '4932'
quality_controlled: 0
status: public
title: Coupled 3D reconstruction of sparse facial hair and skin
type: journal_article
volume: 31
year: '2012'
...
---
_id: '2104'
abstract:
- lang: eng
  text: 'In recent years, various methods have been introduced to exploit pre-recorded
    data to improve the performance and/or realism of dynamic deformations, but their
    differences and similarities have not been adequately analyzed or discussed. So
    far, the proposed methods have been explored mainly in the research context. They
    have not been adopted by the computer graphics industry. This course bridges the
    gap between research labs and industry to present a unifying theory and understanding
    of data-driven methods for dynamic deformations that may inspire development of
    novel solutions. It focuses on application of data-driven methods to three areas
    of computer animation: dynamic deformation of faces, soft volumetric tissue, and
    cloth. And it describes how to approach these challenges in a data-driven manner,
    classifies the various methods, and demonstrates how data-driven methods can work
    in other settings. '
author:
- first_name: Miguel
  full_name: Otaduy, Miguel A
  last_name: Otaduy
- first_name: Bernd
  full_name: Bernd Bickel
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Derek
  full_name: Bradley, Derek J
  last_name: Bradley
- first_name: Huamin
  full_name: Wang, Huamin
  last_name: Wang
citation:
  ama: 'Otaduy M, Bickel B, Bradley D, Wang H. Data-driven simulation methods in computer
    graphics: Cloth, tissue and faces. In: ACM; 2012. doi:<a href="https://doi.org/10.1145/2343483.2343495">10.1145/2343483.2343495</a>'
  apa: 'Otaduy, M., Bickel, B., Bradley, D., &#38; Wang, H. (2012). Data-driven simulation
    methods in computer graphics: Cloth, tissue and faces. Presented at the SIGGRAPH:
    Special Interest Group on Computer Graphics and Interactive Techniques, ACM. <a
    href="https://doi.org/10.1145/2343483.2343495">https://doi.org/10.1145/2343483.2343495</a>'
  chicago: 'Otaduy, Miguel, Bernd Bickel, Derek Bradley, and Huamin Wang. “Data-Driven
    Simulation Methods in Computer Graphics: Cloth, Tissue and Faces.” ACM, 2012.
    <a href="https://doi.org/10.1145/2343483.2343495">https://doi.org/10.1145/2343483.2343495</a>.'
  ieee: 'M. Otaduy, B. Bickel, D. Bradley, and H. Wang, “Data-driven simulation methods
    in computer graphics: Cloth, tissue and faces,” presented at the SIGGRAPH: Special
    Interest Group on Computer Graphics and Interactive Techniques, 2012.'
  ista: 'Otaduy M, Bickel B, Bradley D, Wang H. 2012. Data-driven simulation methods
    in computer graphics: Cloth, tissue and faces. SIGGRAPH: Special Interest Group
    on Computer Graphics and Interactive Techniques.'
  mla: 'Otaduy, Miguel, et al. <i>Data-Driven Simulation Methods in Computer Graphics:
    Cloth, Tissue and Faces</i>. ACM, 2012, doi:<a href="https://doi.org/10.1145/2343483.2343495">10.1145/2343483.2343495</a>.'
  short: M. Otaduy, B. Bickel, D. Bradley, H. Wang, in:, ACM, 2012.
conference:
  name: 'SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques'
date_created: 2018-12-11T11:55:44Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2021-01-12T06:55:20Z
day: '01'
doi: 10.1145/2343483.2343495
extern: 1
month: '01'
publication_status: published
publisher: ACM
publist_id: '4930'
quality_controlled: 0
status: public
title: 'Data-driven simulation methods in computer graphics: Cloth, tissue and faces'
type: conference
year: '2012'
...
---
_id: '2105'
acknowledgement: Mélina Skouras was partially supported by the NCCR Co-Me of the Swiss
  National Science Foundation.
author:
- first_name: Mélina
  full_name: Skouras, Mélina
  last_name: Skouras
- first_name: Bernhard
  full_name: Thomaszewski, Bernhard
  last_name: Thomaszewski
- first_name: Bernd
  full_name: Bernd Bickel
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Markus
  full_name: Groß, Markus S
  last_name: Groß
citation:
  ama: 'Skouras M, Thomaszewski B, Bickel B, Groß M. Computational design of rubber
    balloons. In: Vol 31. Wiley-Blackwell; 2012:835-844. doi:<a href="https://doi.org/10.1111/j.1467-8659.2012.03064.x">10.1111/j.1467-8659.2012.03064.x</a>'
  apa: 'Skouras, M., Thomaszewski, B., Bickel, B., &#38; Groß, M. (2012). Computational
    design of rubber balloons (Vol. 31, pp. 835–844). Presented at the EUROGRAPHICS:
    European Association for Computer Graphics, Wiley-Blackwell. <a href="https://doi.org/10.1111/j.1467-8659.2012.03064.x">https://doi.org/10.1111/j.1467-8659.2012.03064.x</a>'
  chicago: Skouras, Mélina, Bernhard Thomaszewski, Bernd Bickel, and Markus Groß.
    “Computational Design of Rubber Balloons,” 31:835–44. Wiley-Blackwell, 2012. <a
    href="https://doi.org/10.1111/j.1467-8659.2012.03064.x">https://doi.org/10.1111/j.1467-8659.2012.03064.x</a>.
  ieee: 'M. Skouras, B. Thomaszewski, B. Bickel, and M. Groß, “Computational design
    of rubber balloons,” presented at the EUROGRAPHICS: European Association for Computer
    Graphics, 2012, vol. 31, no. 2, pp. 835–844.'
  ista: 'Skouras M, Thomaszewski B, Bickel B, Groß M. 2012. Computational design of
    rubber balloons. EUROGRAPHICS: European Association for Computer Graphics vol.
    31, 835–844.'
  mla: Skouras, Mélina, et al. <i>Computational Design of Rubber Balloons</i>. Vol.
    31, no. 2, Wiley-Blackwell, 2012, pp. 835–44, doi:<a href="https://doi.org/10.1111/j.1467-8659.2012.03064.x">10.1111/j.1467-8659.2012.03064.x</a>.
  short: M. Skouras, B. Thomaszewski, B. Bickel, M. Groß, in:, Wiley-Blackwell, 2012,
    pp. 835–844.
conference:
  name: 'EUROGRAPHICS: European Association for Computer Graphics'
date_created: 2018-12-11T11:55:45Z
date_published: 2012-05-01T00:00:00Z
date_updated: 2021-01-12T06:55:20Z
day: '01'
doi: 10.1111/j.1467-8659.2012.03064.x
extern: 1
intvolume: '        31'
issue: '2'
month: '05'
page: 835 - 844
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4928'
quality_controlled: 0
status: public
title: Computational design of rubber balloons
type: conference
volume: 31
year: '2012'
...
---
_id: '2106'
abstract:
- lang: eng
  text: Progress in cloth simulation for computer animation and apparel design has
    led to a multitude of deformation models, each with its own way of relating geometry,
    deformation, and forces. As simulators improve, differences between these models
    become more important, but it is difficult to choose a model and a set of parameters
    to match a given real material simply by looking at simulation results. This paper
    provides measurement and fitting methods that allow nonlinear models to be fit
    to the observed deformation of a particular cloth sample. Unlike standard textile
    testing, our system measures complex 3D deformations of a sheet of cloth, not
    just one-dimensional force-displacement curves, so it works under a wider range
    of deformation conditions. The fitted models are then evaluated by comparison
    to measured deformations with motions very different from those used for fitting.
acknowledgement: This work was funded in part by the Spanish Ministry of Science and
  Innovation, project TIN2009-07942, and by the European Research Council, project
  ERC-2011-StG-280135 Animetrics.
author:
- first_name: Eder
  full_name: Miguel, Eder
  last_name: Miguel
- first_name: Derek
  full_name: Bradley, Derek J
  last_name: Bradley
- first_name: Bernhard
  full_name: Thomaszewski, Bernhard
  last_name: Thomaszewski
- first_name: Bernd
  full_name: Bernd Bickel
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Wojciech
  full_name: Matusik, Wojciech
  last_name: Matusik
- first_name: Miguel
  full_name: Otaduy, Miguel A
  last_name: Otaduy
- first_name: Steve
  full_name: Marschner, Steve
  last_name: Marschner
citation:
  ama: 'Miguel E, Bradley D, Thomaszewski B, et al. Data-driven estimation of cloth
    simulation models. In: Vol 31. Wiley-Blackwell; 2012:519-528. doi:<a href="https://doi.org/10.1111/j.1467-8659.2012.03031.x">10.1111/j.1467-8659.2012.03031.x</a>'
  apa: Miguel, E., Bradley, D., Thomaszewski, B., Bickel, B., Matusik, W., Otaduy,
    M., &#38; Marschner, S. (2012). Data-driven estimation of cloth simulation models
    (Vol. 31, pp. 519–528). Presented at the Computer Graphics Forum, Wiley-Blackwell.
    <a href="https://doi.org/10.1111/j.1467-8659.2012.03031.x">https://doi.org/10.1111/j.1467-8659.2012.03031.x</a>
  chicago: Miguel, Eder, Derek Bradley, Bernhard Thomaszewski, Bernd Bickel, Wojciech
    Matusik, Miguel Otaduy, and Steve Marschner. “Data-Driven Estimation of Cloth
    Simulation Models,” 31:519–28. Wiley-Blackwell, 2012. <a href="https://doi.org/10.1111/j.1467-8659.2012.03031.x">https://doi.org/10.1111/j.1467-8659.2012.03031.x</a>.
  ieee: E. Miguel <i>et al.</i>, “Data-driven estimation of cloth simulation models,”
    presented at the Computer Graphics Forum, 2012, vol. 31, no. 2, pp. 519–528.
  ista: Miguel E, Bradley D, Thomaszewski B, Bickel B, Matusik W, Otaduy M, Marschner
    S. 2012. Data-driven estimation of cloth simulation models. Computer Graphics
    Forum vol. 31, 519–528.
  mla: Miguel, Eder, et al. <i>Data-Driven Estimation of Cloth Simulation Models</i>.
    Vol. 31, no. 2, Wiley-Blackwell, 2012, pp. 519–28, doi:<a href="https://doi.org/10.1111/j.1467-8659.2012.03031.x">10.1111/j.1467-8659.2012.03031.x</a>.
  short: E. Miguel, D. Bradley, B. Thomaszewski, B. Bickel, W. Matusik, M. Otaduy,
    S. Marschner, in:, Wiley-Blackwell, 2012, pp. 519–528.
conference:
  name: Computer Graphics Forum
date_created: 2018-12-11T11:55:45Z
date_published: 2012-05-01T00:00:00Z
date_updated: 2021-01-12T06:55:21Z
day: '01'
doi: 10.1111/j.1467-8659.2012.03031.x
extern: 1
intvolume: '        31'
issue: '2'
month: '05'
page: 519 - 528
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4929'
quality_controlled: 0
status: public
title: Data-driven estimation of cloth simulation models
type: conference
volume: 31
year: '2012'
...
---
_id: '2125'
abstract:
- lang: eng
  text: We consider a class of stochastic PDEs of Burgers type in spatial dimension
    1, driven by space–time white noise. Even though it is well known that these equations
    are well posed, it turns out that if one performs a spatial discretization of
    the nonlinearity in the “wrong” way, then the sequence of approximate equations
    does converge to a limit, but this limit exhibits an additional correction term.
    This correction term is proportional to the local quadratic cross-variation (in
    space) of the gradient of the conserved quantity with the solution itself. This
    can be understood as a consequence of the fact that for any fixed time, the law
    of the solution is locally equivalent to Wiener measure, where space plays the
    role of time. In this sense, the correction term is similar to the usual Itô–Stratonovich
    correction term that arises when one considers different temporal discretizations
    of stochastic ODEs.
acknowledgement: Supported by Rubicon Grant 680-50-0901 of the Netherlands Organisation
  for Scientific Research (NWO). Supported by the EPSRC Grants EP/E002269/1 and EP/D071593/1,
  a Wolfson Research Merit Award of the Royal Society and a Philip Leverhulme prize
  of the Lev
author:
- first_name: Martin
  full_name: Hairer, Martin M
  last_name: Hairer
- first_name: Jan
  full_name: Jan Maas
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
citation:
  ama: Hairer M, Maas J. A spatial version of the Itô-Stratonovich correction. <i>Annals
    of Probability</i>. 2012;40(4):1675-1714. doi:<a href="https://doi.org/10.1214/11-AOP662">10.1214/11-AOP662</a>
  apa: Hairer, M., &#38; Maas, J. (2012). A spatial version of the Itô-Stratonovich
    correction. <i>Annals of Probability</i>. Institute of Mathematical Statistics.
    <a href="https://doi.org/10.1214/11-AOP662">https://doi.org/10.1214/11-AOP662</a>
  chicago: Hairer, Martin, and Jan Maas. “A Spatial Version of the Itô-Stratonovich
    Correction.” <i>Annals of Probability</i>. Institute of Mathematical Statistics,
    2012. <a href="https://doi.org/10.1214/11-AOP662">https://doi.org/10.1214/11-AOP662</a>.
  ieee: M. Hairer and J. Maas, “A spatial version of the Itô-Stratonovich correction,”
    <i>Annals of Probability</i>, vol. 40, no. 4. Institute of Mathematical Statistics,
    pp. 1675–1714, 2012.
  ista: Hairer M, Maas J. 2012. A spatial version of the Itô-Stratonovich correction.
    Annals of Probability. 40(4), 1675–1714.
  mla: Hairer, Martin, and Jan Maas. “A Spatial Version of the Itô-Stratonovich Correction.”
    <i>Annals of Probability</i>, vol. 40, no. 4, Institute of Mathematical Statistics,
    2012, pp. 1675–714, doi:<a href="https://doi.org/10.1214/11-AOP662">10.1214/11-AOP662</a>.
  short: M. Hairer, J. Maas, Annals of Probability 40 (2012) 1675–1714.
date_created: 2018-12-11T11:55:51Z
date_published: 2012-07-01T00:00:00Z
date_updated: 2021-01-12T06:55:27Z
day: '01'
doi: 10.1214/11-AOP662
extern: 1
intvolume: '        40'
issue: '4'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1011.0966
month: '07'
oa: 1
page: 1675 - 1714
publication: Annals of Probability
publication_status: published
publisher: Institute of Mathematical Statistics
publist_id: '4908'
quality_controlled: 0
status: public
title: A spatial version of the Itô-Stratonovich correction
type: journal_article
volume: 40
year: '2012'
...
---
_id: '2127'
abstract:
- lang: eng
  text: We study a new notion of Ricci curvature that applies to Markov chains on
    discrete spaces. This notion relies on geodesic convexity of the entropy and is
    analogous to the one introduced by Lott, Sturm, and Villani for geodesic measure
    spaces. In order to apply to the discrete setting, the role of the Wasserstein
    metric is taken over by a different metric, having the property that continuous
    time Markov chains are gradient flows of the entropy. Using this notion of Ricci
    curvature we prove discrete analogues of fundamental results by Bakry–Émery and
    Otto–Villani. Further, we show that Ricci curvature bounds are preserved under
    tensorisation. As a special case we obtain the sharp Ricci curvature lower bound
    for the discrete hypercube.
acknowledgement: Jan Maas is supported by Rubicon subsidy 680-50-0901 of the Netherlands
  Organisation for Scientific Research (NWO).
author:
- first_name: Matthias
  full_name: Erbar, Matthias
  last_name: Erbar
- first_name: Jan
  full_name: Jan Maas
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
citation:
  ama: Erbar M, Maas J. Ricci curvature of finite Markov chains via convexity of the
    entropy. <i>Archive for Rational Mechanics and Analysis</i>. 2012;206(3):997-1038.
    doi:<a href="https://doi.org/10.1007/s00205-012-0554-z">10.1007/s00205-012-0554-z</a>
  apa: Erbar, M., &#38; Maas, J. (2012). Ricci curvature of finite Markov chains via
    convexity of the entropy. <i>Archive for Rational Mechanics and Analysis</i>.
    Springer. <a href="https://doi.org/10.1007/s00205-012-0554-z">https://doi.org/10.1007/s00205-012-0554-z</a>
  chicago: Erbar, Matthias, and Jan Maas. “Ricci Curvature of Finite Markov Chains
    via Convexity of the Entropy.” <i>Archive for Rational Mechanics and Analysis</i>.
    Springer, 2012. <a href="https://doi.org/10.1007/s00205-012-0554-z">https://doi.org/10.1007/s00205-012-0554-z</a>.
  ieee: M. Erbar and J. Maas, “Ricci curvature of finite Markov chains via convexity
    of the entropy,” <i>Archive for Rational Mechanics and Analysis</i>, vol. 206,
    no. 3. Springer, pp. 997–1038, 2012.
  ista: Erbar M, Maas J. 2012. Ricci curvature of finite Markov chains via convexity
    of the entropy. Archive for Rational Mechanics and Analysis. 206(3), 997–1038.
  mla: Erbar, Matthias, and Jan Maas. “Ricci Curvature of Finite Markov Chains via
    Convexity of the Entropy.” <i>Archive for Rational Mechanics and Analysis</i>,
    vol. 206, no. 3, Springer, 2012, pp. 997–1038, doi:<a href="https://doi.org/10.1007/s00205-012-0554-z">10.1007/s00205-012-0554-z</a>.
  short: M. Erbar, J. Maas, Archive for Rational Mechanics and Analysis 206 (2012)
    997–1038.
date_created: 2018-12-11T11:55:52Z
date_published: 2012-12-01T00:00:00Z
date_updated: 2021-01-12T06:55:28Z
day: '01'
doi: 10.1007/s00205-012-0554-z
extern: 1
intvolume: '       206'
issue: '3'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1111.2687
month: '12'
oa: 1
page: 997 - 1038
publication: Archive for Rational Mechanics and Analysis
publication_status: published
publisher: Springer
publist_id: '4906'
quality_controlled: 0
status: public
title: Ricci curvature of finite Markov chains via convexity of the entropy
type: journal_article
volume: 206
year: '2012'
...
---
_id: '2128'
abstract:
- lang: eng
  text: We introduce a technique for handling Whitney decompositions in Gaussian harmonic
    analysis and apply it to the study of Gaussian analogues of the classical tent
    spaces T 1,q of Coifman–Meyer–Stein.
acknowledgement: J. Maas was supported by Rubicon subsidy 680-50-0901 of the Netherlands
  Organisation for Scientific Research (NWO). J. van Neerven was supported by VICI
  subsidy 639.033.604 of the Netherlands Organisation for Scientific Research (NWO).
author:
- first_name: Jan
  full_name: Jan Maas
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
- first_name: Jan
  full_name: van Neerven, Jan M
  last_name: Van Neerven
- first_name: Pierre
  full_name: Portal, Pierre
  last_name: Portal
citation:
  ama: Maas J, Van Neerven J, Portal P. Whitney coverings and the tent spaces T 1,q
    (γ) for the Gaussian measure. <i>Arkiv för Matematik</i>. 2012;50(2):379-395.
    doi:<a href="https://doi.org/10.1007/s11512-010-0143-z">10.1007/s11512-010-0143-z</a>
  apa: Maas, J., Van Neerven, J., &#38; Portal, P. (2012). Whitney coverings and the
    tent spaces T 1,q (γ) for the Gaussian measure. <i>Arkiv För Matematik</i>. Springer.
    <a href="https://doi.org/10.1007/s11512-010-0143-z">https://doi.org/10.1007/s11512-010-0143-z</a>
  chicago: Maas, Jan, Jan Van Neerven, and Pierre Portal. “Whitney Coverings and the
    Tent Spaces T 1,q (γ) for the Gaussian Measure.” <i>Arkiv För Matematik</i>. Springer,
    2012. <a href="https://doi.org/10.1007/s11512-010-0143-z">https://doi.org/10.1007/s11512-010-0143-z</a>.
  ieee: J. Maas, J. Van Neerven, and P. Portal, “Whitney coverings and the tent spaces
    T 1,q (γ) for the Gaussian measure,” <i>Arkiv för Matematik</i>, vol. 50, no.
    2. Springer, pp. 379–395, 2012.
  ista: Maas J, Van Neerven J, Portal P. 2012. Whitney coverings and the tent spaces
    T 1,q (γ) for the Gaussian measure. Arkiv för Matematik. 50(2), 379–395.
  mla: Maas, Jan, et al. “Whitney Coverings and the Tent Spaces T 1,q (γ) for the
    Gaussian Measure.” <i>Arkiv För Matematik</i>, vol. 50, no. 2, Springer, 2012,
    pp. 379–95, doi:<a href="https://doi.org/10.1007/s11512-010-0143-z">10.1007/s11512-010-0143-z</a>.
  short: J. Maas, J. Van Neerven, P. Portal, Arkiv För Matematik 50 (2012) 379–395.
date_created: 2018-12-11T11:55:52Z
date_published: 2012-10-01T00:00:00Z
date_updated: 2021-01-12T06:55:28Z
day: '01'
doi: 10.1007/s11512-010-0143-z
extern: 1
intvolume: '        50'
issue: '2'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1002.4911
month: '10'
oa: 1
page: 379 - 395
publication: Arkiv för Matematik
publication_status: published
publisher: Springer
publist_id: '4907'
quality_controlled: 0
status: public
title: Whitney coverings and the tent spaces T 1,q (γ) for the Gaussian measure
type: journal_article
volume: 50
year: '2012'
...
---
_id: '2201'
abstract:
- lang: eng
  text: We study the growth dynamics of ordered structures of strongly interacting
    polar molecules in optical lattices. Using a dipole blockade of microwave excitations,
    we map the system onto an interacting spin-1/2 model possessing ground states
    with crystalline order, and describe a way to prepare these states by nonadiabatically
    driving the transitions between molecular rotational levels. The proposed technique
    bypasses the need to cross a phase transition and allows for the creation of ordered
    domains of considerably larger size compared to approaches relying on adiabatic
    preparation.
article_processing_charge: No
author:
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Roman
  full_name: Krems, Roman
  last_name: Krems
- first_name: Hendrik
  full_name: Weimer, Hendrik
  last_name: Weimer
citation:
  ama: Lemeshko M, Krems R, Weimer H. Nonadiabatic preparation of spin crystals with
    ultracold polar molecules. <i>Physical Review Letters</i>. 2012;109(3). doi:<a
    href="https://doi.org/10.1103/PhysRevLett.109.035301">10.1103/PhysRevLett.109.035301</a>
  apa: Lemeshko, M., Krems, R., &#38; Weimer, H. (2012). Nonadiabatic preparation
    of spin crystals with ultracold polar molecules. <i>Physical Review Letters</i>.
    American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.109.035301">https://doi.org/10.1103/PhysRevLett.109.035301</a>
  chicago: Lemeshko, Mikhail, Roman Krems, and Hendrik Weimer. “Nonadiabatic Preparation
    of Spin Crystals with Ultracold Polar Molecules.” <i>Physical Review Letters</i>.
    American Physical Society, 2012. <a href="https://doi.org/10.1103/PhysRevLett.109.035301">https://doi.org/10.1103/PhysRevLett.109.035301</a>.
  ieee: M. Lemeshko, R. Krems, and H. Weimer, “Nonadiabatic preparation of spin crystals
    with ultracold polar molecules,” <i>Physical Review Letters</i>, vol. 109, no.
    3. American Physical Society, 2012.
  ista: Lemeshko M, Krems R, Weimer H. 2012. Nonadiabatic preparation of spin crystals
    with ultracold polar molecules. Physical Review Letters. 109(3).
  mla: Lemeshko, Mikhail, et al. “Nonadiabatic Preparation of Spin Crystals with Ultracold
    Polar Molecules.” <i>Physical Review Letters</i>, vol. 109, no. 3, American Physical
    Society, 2012, doi:<a href="https://doi.org/10.1103/PhysRevLett.109.035301">10.1103/PhysRevLett.109.035301</a>.
  short: M. Lemeshko, R. Krems, H. Weimer, Physical Review Letters 109 (2012).
date_created: 2018-12-11T11:56:17Z
date_published: 2012-07-16T00:00:00Z
date_updated: 2021-11-16T08:01:02Z
day: '16'
doi: 10.1103/PhysRevLett.109.035301
extern: '1'
intvolume: '       109'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1203.0010
month: '07'
oa: 1
oa_version: None
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '4772'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1103/PhysRevLett.109.049901
status: public
title: Nonadiabatic preparation of spin crystals with ultracold polar molecules
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 109
year: '2012'
...
---
_id: '2202'
abstract:
- lang: eng
  text: We propose a method for sensitive parallel detection of low-frequency electromagnetic
    fields based on the fine structure interactions in paramagnetic polar molecules.
    Compared to the recently implemented scheme employing ultracold 87Rb atoms by
    Böhi, the technique based on molecules offers a 100-fold higher sensitivity, the
    possibility to measure both the electric and magnetic field components, and a
    probe of a wide range of frequencies from the dc limit to the THz regime.
author:
- first_name: Sergey
  full_name: Alyabyshev, Sergey V
  last_name: Alyabyshev
- first_name: Mikhail
  full_name: Mikhail Lemeshko
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Roman
  full_name: Krems, Roman V
  last_name: Krems
citation:
  ama: Alyabyshev S, Lemeshko M, Krems R. Sensitive imaging of electromagnetic fields
    with paramagnetic polar molecules. <i>Physical Review A - Atomic, Molecular, and
    Optical Physics</i>. 2012;86(1). doi:<a href="https://doi.org/10.1103/PhysRevA.86.013409">10.1103/PhysRevA.86.013409</a>
  apa: Alyabyshev, S., Lemeshko, M., &#38; Krems, R. (2012). Sensitive imaging of
    electromagnetic fields with paramagnetic polar molecules. <i>Physical Review A
    - Atomic, Molecular, and Optical Physics</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevA.86.013409">https://doi.org/10.1103/PhysRevA.86.013409</a>
  chicago: Alyabyshev, Sergey, Mikhail Lemeshko, and Roman Krems. “Sensitive Imaging
    of Electromagnetic Fields with Paramagnetic Polar Molecules.” <i>Physical Review
    A - Atomic, Molecular, and Optical Physics</i>. American Physical Society, 2012.
    <a href="https://doi.org/10.1103/PhysRevA.86.013409">https://doi.org/10.1103/PhysRevA.86.013409</a>.
  ieee: S. Alyabyshev, M. Lemeshko, and R. Krems, “Sensitive imaging of electromagnetic
    fields with paramagnetic polar molecules,” <i>Physical Review A - Atomic, Molecular,
    and Optical Physics</i>, vol. 86, no. 1. American Physical Society, 2012.
  ista: Alyabyshev S, Lemeshko M, Krems R. 2012. Sensitive imaging of electromagnetic
    fields with paramagnetic polar molecules. Physical Review A - Atomic, Molecular,
    and Optical Physics. 86(1).
  mla: Alyabyshev, Sergey, et al. “Sensitive Imaging of Electromagnetic Fields with
    Paramagnetic Polar Molecules.” <i>Physical Review A - Atomic, Molecular, and Optical
    Physics</i>, vol. 86, no. 1, American Physical Society, 2012, doi:<a href="https://doi.org/10.1103/PhysRevA.86.013409">10.1103/PhysRevA.86.013409</a>.
  short: S. Alyabyshev, M. Lemeshko, R. Krems, Physical Review A - Atomic, Molecular,
    and Optical Physics 86 (2012).
date_created: 2018-12-11T11:56:18Z
date_published: 2012-07-13T00:00:00Z
date_updated: 2021-01-12T06:55:57Z
day: '13'
doi: 10.1103/PhysRevA.86.013409
extern: 1
intvolume: '        86'
issue: '1'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1202.1857
month: '07'
oa: 1
publication: Physical Review A - Atomic, Molecular, and Optical Physics
publication_status: published
publisher: American Physical Society
publist_id: '4773'
quality_controlled: 0
status: public
title: Sensitive imaging of electromagnetic fields with paramagnetic polar molecules
type: journal_article
volume: 86
year: '2012'
...
---
_id: '2203'
abstract:
- lang: eng
  text: We show that the electric dipole-dipole interaction between a pair of polar
    molecules undergoes an all-out transformation when superimposed by a far-off-resonant
    optical field. The combined interaction potential becomes tunable by variation
    of wavelength, polarisation and intensity of the optical field and its dependence
    on the intermolecular separation exhibits a crossover from an inverse-power to
    an oscillating behaviour. The ability thereby offered to control molecular interactions
    opens up avenues toward the creation and manipulation of novel phases of ultracold
    polar gases among whose characteristics is a long-range entanglement of the dipoles'
    mutual orientation. We devised an accurate analytic model of such optical-field-dressed
    dipole-dipole interaction potentials, which enables a straightforward access to
    the optical-field parameters required for the design of intermolecular interactions
    in the laboratory.
author:
- first_name: Mikhail
  full_name: Mikhail Lemeshko
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Břetislav
  full_name: Friedrich, Břetislav
  last_name: Friedrich
citation:
  ama: 'Lemeshko M, Friedrich B. Interaction between polar molecules subject to a
    far-off-resonant optical field: Entangled dipoles up- or down-holding each other.
    <i>Molecular Physics</i>. 2012;110(15-16):1873-1881. doi:<a href="https://doi.org/10.1080/00268976.2012.689868">10.1080/00268976.2012.689868</a>'
  apa: 'Lemeshko, M., &#38; Friedrich, B. (2012). Interaction between polar molecules
    subject to a far-off-resonant optical field: Entangled dipoles up- or down-holding
    each other. <i>Molecular Physics</i>. Taylor &#38; Francis. <a href="https://doi.org/10.1080/00268976.2012.689868">https://doi.org/10.1080/00268976.2012.689868</a>'
  chicago: 'Lemeshko, Mikhail, and Břetislav Friedrich. “Interaction between Polar
    Molecules Subject to a Far-off-Resonant Optical Field: Entangled Dipoles up- or
    down-Holding Each Other.” <i>Molecular Physics</i>. Taylor &#38; Francis, 2012.
    <a href="https://doi.org/10.1080/00268976.2012.689868">https://doi.org/10.1080/00268976.2012.689868</a>.'
  ieee: 'M. Lemeshko and B. Friedrich, “Interaction between polar molecules subject
    to a far-off-resonant optical field: Entangled dipoles up- or down-holding each
    other,” <i>Molecular Physics</i>, vol. 110, no. 15–16. Taylor &#38; Francis, pp.
    1873–1881, 2012.'
  ista: 'Lemeshko M, Friedrich B. 2012. Interaction between polar molecules subject
    to a far-off-resonant optical field: Entangled dipoles up- or down-holding each
    other. Molecular Physics. 110(15–16), 1873–1881.'
  mla: 'Lemeshko, Mikhail, and Břetislav Friedrich. “Interaction between Polar Molecules
    Subject to a Far-off-Resonant Optical Field: Entangled Dipoles up- or down-Holding
    Each Other.” <i>Molecular Physics</i>, vol. 110, no. 15–16, Taylor &#38; Francis,
    2012, pp. 1873–81, doi:<a href="https://doi.org/10.1080/00268976.2012.689868">10.1080/00268976.2012.689868</a>.'
  short: M. Lemeshko, B. Friedrich, Molecular Physics 110 (2012) 1873–1881.
date_created: 2018-12-11T11:56:18Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2021-01-12T06:55:58Z
day: '01'
doi: 10.1080/00268976.2012.689868
extern: 1
intvolume: '       110'
issue: 15-16
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1108.4583
month: '01'
oa: 1
page: 1873 - 1881
publication: Molecular Physics
publication_status: published
publisher: Taylor & Francis
publist_id: '4770'
quality_controlled: 0
status: public
title: 'Interaction between polar molecules subject to a far-off-resonant optical
  field: Entangled dipoles up- or down-holding each other'
type: journal_article
volume: 110
year: '2012'
...
---
_id: '2262'
abstract:
- lang: eng
  text: 'Mosaic Analysis with Double Markers (MADM) is a method for generating genetically
    mosaic mice, in which sibling mutant and wild-type cells are labeled with different
    fluorescent markers. It is a powerful tool that enables analysis of gene function
    at the single cell level in vivo. It requires transgenic cassettes to be located
    between the centromere and the mutation in the gene of interest on the same chromosome.
    Here we compare procedures for introduction of MADM cassettes into new loci in
    the mouse genome, and describe new approaches for expanding the utility of MADM.
    We show that: 1) Targeted homologous recombination outperforms random transgenesis
    in generation of reliably expressed MADM cassettes, 2) MADM cassettes in new genomic
    loci need to be validated for biallelic and ubiquitous expression, 3) Recombination
    between MADM cassettes on different chromosomes can be used to study reciprocal
    chromosomal deletions/duplications, and 4) MADM can be modified to permit transgene
    expression by combining it with a binary expression system. The advances described
    in this study expand current, and enable new and more versatile applications of
    MADM.'
acknowledgement: This work was supported by a National Institutes of Health grant
  to LL (R01-NS050835). BT was a Damon Runyon Fellow and was supported by the Damon
  Runyon Cancer Research Foundation Grant DRG-1819-04. KM was supported by the Japan
  Society for the Promotion of Science program for Research Abroad and Human Frontier
  Science Program Organization (LT00300/2007-L). SH was supported by postdoctoral
  fellowships from the European Molecular Biology Organization (ALTF 851-2005), Human
  Frontier Science Program Organization (LT00805/2006-L), and Swiss National Science
  Foundation (PA00P3_124160 and PA00P3_136482). HZ is a Pew Scholar in Biomedical
  Sciences, supported by The Pew Charitable Trusts. LL is an investigator of the Howard
  Hughes Medical Institute. The funders had no role in study design, data collection
  and analysis, decision to publish, or preparation of the manuscript.
author:
- first_name: Bosiljka
  full_name: Tasic, Bosiljka
  last_name: Tasic
- first_name: Kazunari
  full_name: Miyamichi, Kazunari
  last_name: Miyamichi
- first_name: Simon
  full_name: Simon Hippenmeyer
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
- first_name: Vardhan
  full_name: Dani, Vardhan S.
  last_name: Dani
- first_name: H.
  full_name: Zeng, H.
  last_name: Zeng
- first_name: William
  full_name: Joo, William
  last_name: Joo
- first_name: Hui
  full_name: Zong, Hui
  last_name: Zong
- first_name: Yanru
  full_name: Chen-Tsai, Yanru
  last_name: Chen Tsai
- first_name: Liqun
  full_name: Luo, Liqun
  last_name: Luo
citation:
  ama: Tasic B, Miyamichi K, Hippenmeyer S, et al. Extensions of MADM (Mosaic Analysis
    with Double Markers) in Mice . <i>PLoS One</i>. 2012;7(3). doi:<a href="https://doi.org/10.1371/journal.pone.0033332">10.1371/journal.pone.0033332</a>
  apa: Tasic, B., Miyamichi, K., Hippenmeyer, S., Dani, V., Zeng, H., Joo, W., … Luo,
    L. (2012). Extensions of MADM (Mosaic Analysis with Double Markers) in Mice .
    <i>PLoS One</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pone.0033332">https://doi.org/10.1371/journal.pone.0033332</a>
  chicago: Tasic, Bosiljka, Kazunari Miyamichi, Simon Hippenmeyer, Vardhan Dani, H.
    Zeng, William Joo, Hui Zong, Yanru Chen Tsai, and Liqun Luo. “Extensions of MADM
    (Mosaic Analysis with Double Markers) in Mice .” <i>PLoS One</i>. Public Library
    of Science, 2012. <a href="https://doi.org/10.1371/journal.pone.0033332">https://doi.org/10.1371/journal.pone.0033332</a>.
  ieee: B. Tasic <i>et al.</i>, “Extensions of MADM (Mosaic Analysis with Double Markers)
    in Mice ,” <i>PLoS One</i>, vol. 7, no. 3. Public Library of Science, 2012.
  ista: Tasic B, Miyamichi K, Hippenmeyer S, Dani V, Zeng H, Joo W, Zong H, Chen Tsai
    Y, Luo L. 2012. Extensions of MADM (Mosaic Analysis with Double Markers) in Mice
    . PLoS One. 7(3).
  mla: Tasic, Bosiljka, et al. “Extensions of MADM (Mosaic Analysis with Double Markers)
    in Mice .” <i>PLoS One</i>, vol. 7, no. 3, Public Library of Science, 2012, doi:<a
    href="https://doi.org/10.1371/journal.pone.0033332">10.1371/journal.pone.0033332</a>.
  short: B. Tasic, K. Miyamichi, S. Hippenmeyer, V. Dani, H. Zeng, W. Joo, H. Zong,
    Y. Chen Tsai, L. Luo, PLoS One 7 (2012).
date_created: 2018-12-11T11:56:38Z
date_published: 2012-03-27T00:00:00Z
date_updated: 2021-01-12T06:56:22Z
day: '27'
doi: 10.1371/journal.pone.0033332
extern: 1
intvolume: '         7'
issue: '3'
month: '03'
publication: PLoS One
publication_status: published
publisher: Public Library of Science
publist_id: '4683'
quality_controlled: 0
status: public
title: 'Extensions of MADM (Mosaic Analysis with Double Markers) in Mice '
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
volume: 7
year: '2012'
...
