---
_id: '6149'
article_processing_charge: No
author:
- first_name: Birgitta
  full_name: Olofsson, Birgitta
  last_name: Olofsson
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
citation:
  ama: 'Olofsson B, de Bono M. Sleep: dozy worms and sleepy flies. <i>Current Biology</i>.
    2008;18(5):R204-R206. doi:<a href="https://doi.org/10.1016/j.cub.2008.01.002">10.1016/j.cub.2008.01.002</a>'
  apa: 'Olofsson, B., &#38; de Bono, M. (2008). Sleep: dozy worms and sleepy flies.
    <i>Current Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.cub.2008.01.002">https://doi.org/10.1016/j.cub.2008.01.002</a>'
  chicago: 'Olofsson, Birgitta, and Mario de Bono. “Sleep: Dozy Worms and Sleepy Flies.”
    <i>Current Biology</i>. Elsevier, 2008. <a href="https://doi.org/10.1016/j.cub.2008.01.002">https://doi.org/10.1016/j.cub.2008.01.002</a>.'
  ieee: 'B. Olofsson and M. de Bono, “Sleep: dozy worms and sleepy flies,” <i>Current
    Biology</i>, vol. 18, no. 5. Elsevier, pp. R204–R206, 2008.'
  ista: 'Olofsson B, de Bono M. 2008. Sleep: dozy worms and sleepy flies. Current
    Biology. 18(5), R204–R206.'
  mla: 'Olofsson, Birgitta, and Mario de Bono. “Sleep: Dozy Worms and Sleepy Flies.”
    <i>Current Biology</i>, vol. 18, no. 5, Elsevier, 2008, pp. R204–06, doi:<a href="https://doi.org/10.1016/j.cub.2008.01.002">10.1016/j.cub.2008.01.002</a>.'
  short: B. Olofsson, M. de Bono, Current Biology 18 (2008) R204–R206.
date_created: 2019-03-21T08:23:24Z
date_published: 2008-03-11T00:00:00Z
date_updated: 2022-08-25T15:03:41Z
day: '11'
doi: 10.1016/j.cub.2008.01.002
extern: '1'
external_id:
  pmid:
  - '18334193'
intvolume: '        18'
issue: '5'
language:
- iso: eng
month: '03'
oa_version: None
page: R204-R206
pmid: 1
publication: Current Biology
publication_identifier:
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: 'Sleep: dozy worms and sleepy flies'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 18
year: '2008'
...
---
_id: '1460'
abstract:
- lang: eng
  text: 'We calculate the E-polynomials of certain twisted GL(n,ℂ)-character varieties
    Mn of Riemann surfaces by counting points over finite fields using the character
    table of the finite group of Lie-type GL(n, q) and a theorem proved in the appendix
    by N. Katz. We deduce from this calculation several geometric results, for example,
    the value of the topological Euler characteristic of the associated PGL(n,ℂ)-character
    variety. The calculation also leads to several conjectures about the cohomology
    of Mn: an explicit conjecture for its mixed Hodge polynomial; a conjectured curious
    hard Lefschetz theorem and a conjecture relating the pure part to absolutely indecomposable
    representations of a certain quiver. We prove these conjectures for n=2.'
acknowledgement: The first author was supported by NSF grants DMS-0305505 and DMS-
  0604775 an Alfred Sloan Fellowship and a Royal Society University Research Fellowship.
  The second author was supported by an NSF grant DMS-0200605.
author:
- first_name: Tamas
  full_name: Tamas Hausel
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
- first_name: Fernando
  full_name: Rodríguez Villegas, Fernando
  last_name: Rodríguez Villegas
citation:
  ama: 'Hausel T, Rodríguez Villegas F. Mixed Hodge polynomials of character varieties:
    With an appendix by Nicholas M. Katz. <i>Inventiones Mathematicae</i>. 2008;174(3):555-624.
    doi:<a href="https://doi.org/10.1007/s00222-008-0142-x">10.1007/s00222-008-0142-x</a>'
  apa: 'Hausel, T., &#38; Rodríguez Villegas, F. (2008). Mixed Hodge polynomials of
    character varieties: With an appendix by Nicholas M. Katz. <i>Inventiones Mathematicae</i>.
    Springer. <a href="https://doi.org/10.1007/s00222-008-0142-x">https://doi.org/10.1007/s00222-008-0142-x</a>'
  chicago: 'Hausel, Tamás, and Fernando Rodríguez Villegas. “Mixed Hodge Polynomials
    of Character Varieties: With an Appendix by Nicholas M. Katz.” <i>Inventiones
    Mathematicae</i>. Springer, 2008. <a href="https://doi.org/10.1007/s00222-008-0142-x">https://doi.org/10.1007/s00222-008-0142-x</a>.'
  ieee: 'T. Hausel and F. Rodríguez Villegas, “Mixed Hodge polynomials of character
    varieties: With an appendix by Nicholas M. Katz,” <i>Inventiones Mathematicae</i>,
    vol. 174, no. 3. Springer, pp. 555–624, 2008.'
  ista: 'Hausel T, Rodríguez Villegas F. 2008. Mixed Hodge polynomials of character
    varieties: With an appendix by Nicholas M. Katz. Inventiones Mathematicae. 174(3),
    555–624.'
  mla: 'Hausel, Tamás, and Fernando Rodríguez Villegas. “Mixed Hodge Polynomials of
    Character Varieties: With an Appendix by Nicholas M. Katz.” <i>Inventiones Mathematicae</i>,
    vol. 174, no. 3, Springer, 2008, pp. 555–624, doi:<a href="https://doi.org/10.1007/s00222-008-0142-x">10.1007/s00222-008-0142-x</a>.'
  short: T. Hausel, F. Rodríguez Villegas, Inventiones Mathematicae 174 (2008) 555–624.
date_created: 2018-12-11T11:52:09Z
date_published: 2008-12-01T00:00:00Z
date_updated: 2021-01-12T06:50:54Z
day: '01'
doi: 10.1007/s00222-008-0142-x
extern: 1
intvolume: '       174'
issue: '3'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/math/0612668
month: '12'
oa: 1
page: 555 - 624
publication: Inventiones Mathematicae
publication_status: published
publisher: Springer
publist_id: '5732'
quality_controlled: 0
status: public
title: 'Mixed Hodge polynomials of character varieties: With an appendix by Nicholas
  M. Katz'
type: journal_article
volume: 174
year: '2008'
...
---
_id: '13422'
abstract:
- lang: eng
  text: 'Make like a leaf: The synthesis and characterization of a family of “flowerlike”
    Au/Fe3O4 nanoparticles is described, whereby Fe3O4 “leaves” adhere to a gold core
    (see image). The size and numbers of iron oxide domains can be adjusted flexibly
    by changing the proportion of the starting materials and the reaction time.'
article_processing_charge: No
article_type: original
author:
- first_name: Yanhu
  full_name: Wei, Yanhu
  last_name: Wei
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Anatoliy O.
  full_name: Pinchuk, Anatoliy O.
  last_name: Pinchuk
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: Wei Y, Klajn R, Pinchuk AO, Grzybowski BA. Synthesis, shape control, and optical
    properties of hybrid Au/Fe3O4 “nanoflowers.” <i>Small</i>. 2008;4(10):1635-1639.
    doi:<a href="https://doi.org/10.1002/smll.200800511">10.1002/smll.200800511</a>
  apa: Wei, Y., Klajn, R., Pinchuk, A. O., &#38; Grzybowski, B. A. (2008). Synthesis,
    shape control, and optical properties of hybrid Au/Fe3O4 “nanoflowers.” <i>Small</i>.
    Wiley. <a href="https://doi.org/10.1002/smll.200800511">https://doi.org/10.1002/smll.200800511</a>
  chicago: Wei, Yanhu, Rafal Klajn, Anatoliy O. Pinchuk, and Bartosz A. Grzybowski.
    “Synthesis, Shape Control, and Optical Properties of Hybrid Au/Fe3O4 ‘Nanoflowers.’”
    <i>Small</i>. Wiley, 2008. <a href="https://doi.org/10.1002/smll.200800511">https://doi.org/10.1002/smll.200800511</a>.
  ieee: Y. Wei, R. Klajn, A. O. Pinchuk, and B. A. Grzybowski, “Synthesis, shape control,
    and optical properties of hybrid Au/Fe3O4 ‘nanoflowers,’” <i>Small</i>, vol. 4,
    no. 10. Wiley, pp. 1635–1639, 2008.
  ista: Wei Y, Klajn R, Pinchuk AO, Grzybowski BA. 2008. Synthesis, shape control,
    and optical properties of hybrid Au/Fe3O4 “nanoflowers”. Small. 4(10), 1635–1639.
  mla: Wei, Yanhu, et al. “Synthesis, Shape Control, and Optical Properties of Hybrid
    Au/Fe3O4 ‘Nanoflowers.’” <i>Small</i>, vol. 4, no. 10, Wiley, 2008, pp. 1635–39,
    doi:<a href="https://doi.org/10.1002/smll.200800511">10.1002/smll.200800511</a>.
  short: Y. Wei, R. Klajn, A.O. Pinchuk, B.A. Grzybowski, Small 4 (2008) 1635–1639.
date_created: 2023-08-01T10:30:42Z
date_published: 2008-10-09T00:00:00Z
date_updated: 2023-08-08T11:14:50Z
day: '09'
doi: 10.1002/smll.200800511
extern: '1'
external_id:
  pmid:
  - '18636405'
intvolume: '         4'
issue: '10'
keyword:
- Biomaterials
- Biotechnology
- General Materials Science
- General Chemistry
language:
- iso: eng
month: '10'
oa_version: None
page: 1635-1639
pmid: 1
publication: Small
publication_identifier:
  eissn:
  - 1613-6829
  issn:
  - 1613-6810
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Synthesis, shape control, and optical properties of hybrid Au/Fe3O4 “nanoflowers”
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 4
year: '2008'
...
---
_id: '13423'
abstract:
- lang: eng
  text: Supraspheres (SS) composed of hundreds to thousands of metal nanoparticles
    (NPs) and crosslinked by dithiol linkers are assembled into larger structures,
    which are subsequently converted into nanoporous metals (NMs). Conversion is achieved
    by heating which removes organic molecules stabilizing the NPs and allows for
    NP fusion. Heating of SS solutions leads to NMs of overall macroscopic dimensions;
    localized radiation using collimated electron beam is used to prepare metallized
    surface micropatterns. Depending on the composition of supraspherical precursors,
    nanoporous materials composed of up to three metals can be obtained. Strategies
    for controlling pore size and nanoscale surface roughness of these materials are
    discussed.
article_processing_charge: No
article_type: original
author:
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Timothy P.
  full_name: Gray, Timothy P.
  last_name: Gray
- first_name: Paul J.
  full_name: Wesson, Paul J.
  last_name: Wesson
- first_name: Benjamin D.
  full_name: Myers, Benjamin D.
  last_name: Myers
- first_name: Vinayak P.
  full_name: Dravid, Vinayak P.
  last_name: Dravid
- first_name: Stoyan K.
  full_name: Smoukov, Stoyan K.
  last_name: Smoukov
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: Klajn R, Gray TP, Wesson PJ, et al. Bulk synthesis and surface patterning of
    nanoporous metals and alloys from supraspherical nanoparticle aggregates. <i>Advanced
    Functional Materials</i>. 2008;18(18):2763-2769. doi:<a href="https://doi.org/10.1002/adfm.200800293">10.1002/adfm.200800293</a>
  apa: Klajn, R., Gray, T. P., Wesson, P. J., Myers, B. D., Dravid, V. P., Smoukov,
    S. K., &#38; Grzybowski, B. A. (2008). Bulk synthesis and surface patterning of
    nanoporous metals and alloys from supraspherical nanoparticle aggregates. <i>Advanced
    Functional Materials</i>. Wiley. <a href="https://doi.org/10.1002/adfm.200800293">https://doi.org/10.1002/adfm.200800293</a>
  chicago: Klajn, Rafal, Timothy P. Gray, Paul J. Wesson, Benjamin D. Myers, Vinayak
    P. Dravid, Stoyan K. Smoukov, and Bartosz A. Grzybowski. “Bulk Synthesis and Surface
    Patterning of Nanoporous Metals and Alloys from Supraspherical Nanoparticle Aggregates.”
    <i>Advanced Functional Materials</i>. Wiley, 2008. <a href="https://doi.org/10.1002/adfm.200800293">https://doi.org/10.1002/adfm.200800293</a>.
  ieee: R. Klajn <i>et al.</i>, “Bulk synthesis and surface patterning of nanoporous
    metals and alloys from supraspherical nanoparticle aggregates,” <i>Advanced Functional
    Materials</i>, vol. 18, no. 18. Wiley, pp. 2763–2769, 2008.
  ista: Klajn R, Gray TP, Wesson PJ, Myers BD, Dravid VP, Smoukov SK, Grzybowski BA.
    2008. Bulk synthesis and surface patterning of nanoporous metals and alloys from
    supraspherical nanoparticle aggregates. Advanced Functional Materials. 18(18),
    2763–2769.
  mla: Klajn, Rafal, et al. “Bulk Synthesis and Surface Patterning of Nanoporous Metals
    and Alloys from Supraspherical Nanoparticle Aggregates.” <i>Advanced Functional
    Materials</i>, vol. 18, no. 18, Wiley, 2008, pp. 2763–69, doi:<a href="https://doi.org/10.1002/adfm.200800293">10.1002/adfm.200800293</a>.
  short: R. Klajn, T.P. Gray, P.J. Wesson, B.D. Myers, V.P. Dravid, S.K. Smoukov,
    B.A. Grzybowski, Advanced Functional Materials 18 (2008) 2763–2769.
date_created: 2023-08-01T10:30:57Z
date_published: 2008-09-23T00:00:00Z
date_updated: 2023-08-08T11:16:28Z
day: '23'
doi: 10.1002/adfm.200800293
extern: '1'
intvolume: '        18'
issue: '18'
keyword:
- Electrochemistry
- Condensed Matter Physics
- Biomaterials
- Electronic
- Optical and Magnetic Materials
language:
- iso: eng
month: '09'
oa_version: None
page: 2763-2769
publication: Advanced Functional Materials
publication_identifier:
  eissn:
  - 1616-3028
  issn:
  - 1616-301X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Bulk synthesis and surface patterning of nanoporous metals and alloys from
  supraspherical nanoparticle aggregates
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 18
year: '2008'
...
---
_id: '907'
abstract:
- lang: eng
  text: The most common form of protein-coding gene overlap in eukaryotes is a simple
    nested structure, whereby one gene is embedded in an intron of another. Analysis
    of nested protein-coding genes in vertebrates, fruit flies and nematodes revealed
    substantially higher rates of evolutionary gains than losses. The accumulation
    of nested gene structures could not be attributed to any obvious functional relationships
    between the genes involved and represents an increase of the organizational complexity
    of animal genomes via a neutral process.
author:
- first_name: Raquel
  full_name: Assis, Raquel
  last_name: Assis
- first_name: Alexey
  full_name: Kondrashov, Alexey S
  last_name: Kondrashov
- first_name: Eugene
  full_name: Koonin, Eugene V
  last_name: Koonin
- first_name: Fyodor
  full_name: Fyodor Kondrashov
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
citation:
  ama: Assis R, Kondrashov A, Koonin E, Kondrashov F. Nested genes and increasing
    organizational complexity of metazoan genomes. <i>Trends in Genetics</i>. 2008;24(10):475-478.
    doi:<a href="https://doi.org/10.1016/j.tig.2008.08.003">10.1016/j.tig.2008.08.003</a>
  apa: Assis, R., Kondrashov, A., Koonin, E., &#38; Kondrashov, F. (2008). Nested
    genes and increasing organizational complexity of metazoan genomes. <i>Trends
    in Genetics</i>. Elsevier. <a href="https://doi.org/10.1016/j.tig.2008.08.003">https://doi.org/10.1016/j.tig.2008.08.003</a>
  chicago: Assis, Raquel, Alexey Kondrashov, Eugene Koonin, and Fyodor Kondrashov.
    “Nested Genes and Increasing Organizational Complexity of Metazoan Genomes.” <i>Trends
    in Genetics</i>. Elsevier, 2008. <a href="https://doi.org/10.1016/j.tig.2008.08.003">https://doi.org/10.1016/j.tig.2008.08.003</a>.
  ieee: R. Assis, A. Kondrashov, E. Koonin, and F. Kondrashov, “Nested genes and increasing
    organizational complexity of metazoan genomes,” <i>Trends in Genetics</i>, vol.
    24, no. 10. Elsevier, pp. 475–478, 2008.
  ista: Assis R, Kondrashov A, Koonin E, Kondrashov F. 2008. Nested genes and increasing
    organizational complexity of metazoan genomes. Trends in Genetics. 24(10), 475–478.
  mla: Assis, Raquel, et al. “Nested Genes and Increasing Organizational Complexity
    of Metazoan Genomes.” <i>Trends in Genetics</i>, vol. 24, no. 10, Elsevier, 2008,
    pp. 475–78, doi:<a href="https://doi.org/10.1016/j.tig.2008.08.003">10.1016/j.tig.2008.08.003</a>.
  short: R. Assis, A. Kondrashov, E. Koonin, F. Kondrashov, Trends in Genetics 24
    (2008) 475–478.
date_created: 2018-12-11T11:49:08Z
date_published: 2008-10-01T00:00:00Z
date_updated: 2021-01-12T08:21:49Z
day: '01'
doi: 10.1016/j.tig.2008.08.003
extern: 1
intvolume: '        24'
issue: '10'
month: '10'
page: 475 - 478
publication: Trends in Genetics
publication_status: published
publisher: Elsevier
publist_id: '6743'
quality_controlled: 0
status: public
title: Nested genes and increasing organizational complexity of metazoan genomes
type: journal_article
volume: 24
year: '2008'
...
---
_id: '9457'
abstract:
- lang: eng
  text: Eukaryotic chromatin is separated into functional domains differentiated by
    posttranslational histone modifications, histone variants, and DNA methylation1–6.
    Methylation is associated with repression of transcriptional initiation in plants
    and animals, and is frequently found in transposable elements. Proper methylation
    patterns are critical for eukaryotic development4,5, and aberrant methylation-induced
    silencing of tumor suppressor genes is a common feature of human cancer7. In contrast
    to methylation, the histone variant H2A.Z is preferentially deposited by the Swr1
    ATPase complex near 5′ ends of genes where it promotes transcriptional competence8–20.
    How DNA methylation and H2A.Z influence transcription remains largely unknown.
    Here we show that in the plant Arabidopsis thaliana, regions of DNA methylation
    are quantitatively deficient in H2A.Z. Exclusion of H2A.Z is seen at sites of
    DNA methylation in the bodies of actively transcribed genes and in methylated
    transposons. Mutation of the MET1 DNA methyltransferase, which causes both losses
    and gains of DNA methylation4,5, engenders opposite changes in H2A.Z deposition,
    while mutation of the PIE1 subunit of the Swr1 complex that deposits H2A.Z17 leads
    to genome-wide hypermethylation. Our findings indicate that DNA methylation can
    influence chromatin structure and effect gene silencing by excluding H2A.Z, and
    that H2A.Z protects genes from DNA methylation.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
- first_name: Devin
  full_name: Coleman-Derr, Devin
  last_name: Coleman-Derr
- first_name: Tracy
  full_name: Ballinger, Tracy
  last_name: Ballinger
- first_name: Steven
  full_name: Henikoff, Steven
  last_name: Henikoff
citation:
  ama: Zilberman D, Coleman-Derr D, Ballinger T, Henikoff S. Histone H2A.Z and DNA
    methylation are mutually antagonistic chromatin marks. <i>Nature</i>. 2008;456(7218):125-129.
    doi:<a href="https://doi.org/10.1038/nature07324">10.1038/nature07324</a>
  apa: Zilberman, D., Coleman-Derr, D., Ballinger, T., &#38; Henikoff, S. (2008).
    Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. <i>Nature</i>.
    Springer Nature. <a href="https://doi.org/10.1038/nature07324">https://doi.org/10.1038/nature07324</a>
  chicago: Zilberman, Daniel, Devin Coleman-Derr, Tracy Ballinger, and Steven Henikoff.
    “Histone H2A.Z and DNA Methylation Are Mutually Antagonistic Chromatin Marks.”
    <i>Nature</i>. Springer Nature, 2008. <a href="https://doi.org/10.1038/nature07324">https://doi.org/10.1038/nature07324</a>.
  ieee: D. Zilberman, D. Coleman-Derr, T. Ballinger, and S. Henikoff, “Histone H2A.Z
    and DNA methylation are mutually antagonistic chromatin marks,” <i>Nature</i>,
    vol. 456, no. 7218. Springer Nature, pp. 125–129, 2008.
  ista: Zilberman D, Coleman-Derr D, Ballinger T, Henikoff S. 2008. Histone H2A.Z
    and DNA methylation are mutually antagonistic chromatin marks. Nature. 456(7218),
    125–129.
  mla: Zilberman, Daniel, et al. “Histone H2A.Z and DNA Methylation Are Mutually Antagonistic
    Chromatin Marks.” <i>Nature</i>, vol. 456, no. 7218, Springer Nature, 2008, pp.
    125–29, doi:<a href="https://doi.org/10.1038/nature07324">10.1038/nature07324</a>.
  short: D. Zilberman, D. Coleman-Derr, T. Ballinger, S. Henikoff, Nature 456 (2008)
    125–129.
date_created: 2021-06-04T11:49:32Z
date_published: 2008-11-06T00:00:00Z
date_updated: 2021-12-14T08:54:36Z
day: '06'
department:
- _id: DaZi
doi: 10.1038/nature07324
extern: '1'
external_id:
  pmid:
  - '18815594'
intvolume: '       456'
issue: '7218'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877514/
month: '11'
oa: 1
oa_version: Submitted Version
page: 125-129
pmid: 1
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 456
year: '2008'
...
---
_id: '9537'
abstract:
- lang: eng
  text: DNA methylation is an ancient process found in all domains of life. Although
    the enzymes that mediate methylation have remained highly conserved, DNA methylation
    has been adapted for a variety of uses throughout evolution, including defense
    against transposable elements and control of gene expression. Defects in DNA methylation
    are linked to human diseases, including cancer. Methylation has been lost several
    times in the course of animal and fungal evolution, thus limiting the opportunity
    for study in common model organisms. In the past decade, plants have emerged as
    a premier model system for genetic dissection of DNA methylation. A recent combination
    of plant genetics with powerful genomic approaches has led to a number of exciting
    discoveries and promises many more.
article_processing_charge: No
article_type: review
author:
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
citation:
  ama: Zilberman D. The evolving functions of DNA methylation. <i>Current Opinion
    in Plant Biology</i>. 2008;11(5):554-559. doi:<a href="https://doi.org/10.1016/j.pbi.2008.07.004">10.1016/j.pbi.2008.07.004</a>
  apa: Zilberman, D. (2008). The evolving functions of DNA methylation. <i>Current
    Opinion in Plant Biology</i>. Elsevier . <a href="https://doi.org/10.1016/j.pbi.2008.07.004">https://doi.org/10.1016/j.pbi.2008.07.004</a>
  chicago: Zilberman, Daniel. “The Evolving Functions of DNA Methylation.” <i>Current
    Opinion in Plant Biology</i>. Elsevier , 2008. <a href="https://doi.org/10.1016/j.pbi.2008.07.004">https://doi.org/10.1016/j.pbi.2008.07.004</a>.
  ieee: D. Zilberman, “The evolving functions of DNA methylation,” <i>Current Opinion
    in Plant Biology</i>, vol. 11, no. 5. Elsevier , pp. 554–559, 2008.
  ista: Zilberman D. 2008. The evolving functions of DNA methylation. Current Opinion
    in Plant Biology. 11(5), 554–559.
  mla: Zilberman, Daniel. “The Evolving Functions of DNA Methylation.” <i>Current
    Opinion in Plant Biology</i>, vol. 11, no. 5, Elsevier , 2008, pp. 554–59, doi:<a
    href="https://doi.org/10.1016/j.pbi.2008.07.004">10.1016/j.pbi.2008.07.004</a>.
  short: D. Zilberman, Current Opinion in Plant Biology 11 (2008) 554–559.
date_created: 2021-06-08T13:13:37Z
date_published: 2008-10-01T00:00:00Z
date_updated: 2021-12-14T08:54:07Z
department:
- _id: DaZi
doi: 10.1016/j.pbi.2008.07.004
extern: '1'
external_id:
  pmid:
  - '18774331'
intvolume: '        11'
issue: '5'
language:
- iso: eng
month: '10'
oa_version: None
page: 554-559
pmid: 1
publication: Current Opinion in Plant Biology
publication_identifier:
  issn:
  - 1369-5266
publication_status: published
publisher: 'Elsevier '
quality_controlled: '1'
scopus_import: '1'
status: public
title: The evolving functions of DNA methylation
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 11
year: '2008'
...
---
_id: '965'
abstract:
- lang: eng
  text: We give many examples of applying Bogoliubov's forest formula to iterative
    solutions of various nonlinear equations. The same formula describes an extremely
    wide class of objects, from an ordinary quadratic equation to renormalization
    in quantum field theory.
acknowledgement: |-
  This work is supported in part by the Dynasty Foundation (M. N. S.),  the
  Russian Foundation for Basic Research (Grant No
  s. 07-02-00878 and 07-02-00645), a joint grant (Grant
  No. 06-01-92059-CE), the NWO (Project No. 047.011.2004.026), INTAS (Grant No. 05-1000008-7865), the
  Program for Supporting Leading Scientific School
  s (Grant No. NSh-8004.2006.2), and also by a project
  (Project No. ANR-05-BLAN-0029-01, A. Yu. M.).
author:
- first_name: Alexei
  full_name: Morozov, Alexei Y
  last_name: Morozov
- first_name: Maksym
  full_name: Maksym Serbyn
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
citation:
  ama: Morozov A, Serbyn M. Nonlinear algebra and Bogoliubov’s recursion. <i>Theoretical
    and Mathematical Physics</i>. 2008;154(2):270-293. doi:<a href="https://doi.org/10.1007/s11232-008-0026-7">10.1007/s11232-008-0026-7</a>
  apa: Morozov, A., &#38; Serbyn, M. (2008). Nonlinear algebra and Bogoliubov’s recursion.
    <i>Theoretical and Mathematical Physics</i>. Elsevier. <a href="https://doi.org/10.1007/s11232-008-0026-7">https://doi.org/10.1007/s11232-008-0026-7</a>
  chicago: Morozov, Alexei, and Maksym Serbyn. “Nonlinear Algebra and Bogoliubov’s
    Recursion.” <i>Theoretical and Mathematical Physics</i>. Elsevier, 2008. <a href="https://doi.org/10.1007/s11232-008-0026-7">https://doi.org/10.1007/s11232-008-0026-7</a>.
  ieee: A. Morozov and M. Serbyn, “Nonlinear algebra and Bogoliubov’s recursion,”
    <i>Theoretical and Mathematical Physics</i>, vol. 154, no. 2. Elsevier, pp. 270–293,
    2008.
  ista: Morozov A, Serbyn M. 2008. Nonlinear algebra and Bogoliubov’s recursion. Theoretical
    and Mathematical Physics. 154(2), 270–293.
  mla: Morozov, Alexei, and Maksym Serbyn. “Nonlinear Algebra and Bogoliubov’s Recursion.”
    <i>Theoretical and Mathematical Physics</i>, vol. 154, no. 2, Elsevier, 2008,
    pp. 270–93, doi:<a href="https://doi.org/10.1007/s11232-008-0026-7">10.1007/s11232-008-0026-7</a>.
  short: A. Morozov, M. Serbyn, Theoretical and Mathematical Physics 154 (2008) 270–293.
date_created: 2018-12-11T11:49:26Z
date_published: 2008-01-01T00:00:00Z
date_updated: 2021-01-12T08:22:17Z
day: '01'
doi: 10.1007/s11232-008-0026-7
extern: 1
intvolume: '       154'
issue: '2'
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/hep-th/0703258
month: '01'
oa: 1
page: 270 - 293
publication: Theoretical and Mathematical Physics
publication_status: published
publisher: Elsevier
publist_id: '6437'
quality_controlled: 0
status: public
title: Nonlinear algebra and Bogoliubov's recursion
type: journal_article
volume: 154
year: '2008'
...
---
_id: '1036'
abstract:
- lang: eng
  text: We report on the control of interaction-induced dephasing of Bloch oscillations
    for an atomic Bose-Einstein condensate in an optical lattice. We quantify the
    dephasing in terms of the width of the quasimomentum distribution and measure
    its dependence on time for different interaction strengths which we control by
    means of a Feshbach resonance. For minimal interaction, the dephasing time is
    increased from a few to more than 20 thousand Bloch oscillation periods, allowing
    us to realize a BEC-based atom interferometer in the noninteracting limit.
acknowledgement: "We thank A. Daley for theoretical support and for help with\r\nsetting
  \ up the  numerical  calculations  and  A. Buchleitner\r\nand  his  group  for  useful
  \ discussions.  We  are  grateful  to\r\nA. Liem and H. Zellmer for valuable assistance
  in setting\r\nup the 1064 nm fiber amplifier system. We acknowledge\r\ncontributions
  \ by  P.  Unterwaditzer  and  T.  Flir  during  the\r\nearly   stages   of   the
  \  experiment.   We   are   indebted   to\r\nR.  Grimm  for  generous  support  and
  \ gratefully  acknowledge  funding  by  the  Austrian  Ministry  of  Science  and\r\nResearch
  (BMWF) and the Austrian Science Fund (FWF)."
article_processing_charge: No
arxiv: 1
author:
- first_name: Mattias
  full_name: Gustavsson, Mattias
  last_name: Gustavsson
- first_name: Elmar
  full_name: Haller, Elmar
  last_name: Haller
- first_name: Manfred
  full_name: Mark, Manfred
  last_name: Mark
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Gabriel
  full_name: Rojas Kopeinig, Gabriel
  last_name: Rojas Kopeinig
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
citation:
  ama: Gustavsson M, Haller E, Mark M, Danzl JG, Rojas Kopeinig G, Nägerl H. Control
    of interaction-induced dephasing of bloch oscillations. <i>Physical Review Letters</i>.
    2008;100(8). doi:<a href="https://doi.org/10.1103/PhysRevLett.100.080404">10.1103/PhysRevLett.100.080404</a>
  apa: Gustavsson, M., Haller, E., Mark, M., Danzl, J. G., Rojas Kopeinig, G., &#38;
    Nägerl, H. (2008). Control of interaction-induced dephasing of bloch oscillations.
    <i>Physical Review Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.100.080404">https://doi.org/10.1103/PhysRevLett.100.080404</a>
  chicago: Gustavsson, Mattias, Elmar Haller, Manfred Mark, Johann G Danzl, Gabriel
    Rojas Kopeinig, and Hanns Nägerl. “Control of Interaction-Induced Dephasing of
    Bloch Oscillations.” <i>Physical Review Letters</i>. American Physical Society,
    2008. <a href="https://doi.org/10.1103/PhysRevLett.100.080404">https://doi.org/10.1103/PhysRevLett.100.080404</a>.
  ieee: M. Gustavsson, E. Haller, M. Mark, J. G. Danzl, G. Rojas Kopeinig, and H.
    Nägerl, “Control of interaction-induced dephasing of bloch oscillations,” <i>Physical
    Review Letters</i>, vol. 100, no. 8. American Physical Society, 2008.
  ista: Gustavsson M, Haller E, Mark M, Danzl JG, Rojas Kopeinig G, Nägerl H. 2008.
    Control of interaction-induced dephasing of bloch oscillations. Physical Review
    Letters. 100(8).
  mla: Gustavsson, Mattias, et al. “Control of Interaction-Induced Dephasing of Bloch
    Oscillations.” <i>Physical Review Letters</i>, vol. 100, no. 8, American Physical
    Society, 2008, doi:<a href="https://doi.org/10.1103/PhysRevLett.100.080404">10.1103/PhysRevLett.100.080404</a>.
  short: M. Gustavsson, E. Haller, M. Mark, J.G. Danzl, G. Rojas Kopeinig, H. Nägerl,
    Physical Review Letters 100 (2008).
date_created: 2018-12-11T11:49:48Z
date_published: 2008-02-28T00:00:00Z
date_updated: 2021-01-12T06:47:49Z
day: '28'
doi: 10.1103/PhysRevLett.100.080404
extern: '1'
external_id:
  arxiv:
  - '0710.5083'
intvolume: '       100'
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/0710.5083
month: '02'
oa: 1
oa_version: None
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '6353'
status: public
title: Control of interaction-induced dephasing of bloch oscillations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 100
year: '2008'
...
---
_id: '1037'
abstract:
- lang: eng
  text: We experimentally demonstrate Cs2 Feshbach molecules well above the dissociation
    threshold, which are stable against spontaneous decay on the time scale of 1s.
    An optically trapped sample of ultracold dimers is prepared in a high rotational
    state and magnetically tuned into a region with a negative binding energy. The
    metastable character of these molecules arises from the large centrifugal barrier
    in combination with negligible coupling to states with low rotational angular
    momentum. A sharp onset of dissociation with increasing magnetic field is mediated
    by a crossing with a lower rotational dimer state and facilitates dissociation
    on demand with a well-defined energy.
acknowledgement: We thank S. Du ̈rr and T. Volz for fruitful discussions. We acknowledge
  support by the Austrian Science Fund (FWF) within No. SFB 15 (project part 16).
  S.K. is supported within the Marie Curie Intra-European Program of the European
  Commission. F.F. is supported within the Lise Meitner program of the FWF.
article_processing_charge: No
arxiv: 1
author:
- first_name: Steven
  full_name: Knoop, Steven
  last_name: Knoop
- first_name: Michael
  full_name: Mark, Michael
  last_name: Mark
- first_name: Francesca
  full_name: Ferlaino, Francesca
  last_name: Ferlaino
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Tobias
  full_name: Kraemer, Tobias
  last_name: Kraemer
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
- first_name: Rudolf
  full_name: Grimm, Rudolf
  last_name: Grimm
citation:
  ama: Knoop S, Mark M, Ferlaino F, et al. Metastable feshbach molecules in high rotational
    states. <i>Physical Review Letters</i>. 2008;100(8). doi:<a href="https://doi.org/10.1103/PhysRevLett.100.083002">10.1103/PhysRevLett.100.083002</a>
  apa: Knoop, S., Mark, M., Ferlaino, F., Danzl, J. G., Kraemer, T., Nägerl, H., &#38;
    Grimm, R. (2008). Metastable feshbach molecules in high rotational states. <i>Physical
    Review Letters</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.100.083002">https://doi.org/10.1103/PhysRevLett.100.083002</a>
  chicago: Knoop, Steven, Michael Mark, Francesca Ferlaino, Johann G Danzl, Tobias
    Kraemer, Hanns Nägerl, and Rudolf Grimm. “Metastable Feshbach Molecules in High
    Rotational States.” <i>Physical Review Letters</i>. American Physical Society,
    2008. <a href="https://doi.org/10.1103/PhysRevLett.100.083002">https://doi.org/10.1103/PhysRevLett.100.083002</a>.
  ieee: S. Knoop <i>et al.</i>, “Metastable feshbach molecules in high rotational
    states,” <i>Physical Review Letters</i>, vol. 100, no. 8. American Physical Society,
    2008.
  ista: Knoop S, Mark M, Ferlaino F, Danzl JG, Kraemer T, Nägerl H, Grimm R. 2008.
    Metastable feshbach molecules in high rotational states. Physical Review Letters.
    100(8).
  mla: Knoop, Steven, et al. “Metastable Feshbach Molecules in High Rotational States.”
    <i>Physical Review Letters</i>, vol. 100, no. 8, American Physical Society, 2008,
    doi:<a href="https://doi.org/10.1103/PhysRevLett.100.083002">10.1103/PhysRevLett.100.083002</a>.
  short: S. Knoop, M. Mark, F. Ferlaino, J.G. Danzl, T. Kraemer, H. Nägerl, R. Grimm,
    Physical Review Letters 100 (2008).
date_created: 2018-12-11T11:49:49Z
date_published: 2008-02-29T00:00:00Z
date_updated: 2021-01-12T06:47:50Z
day: '29'
doi: 10.1103/PhysRevLett.100.083002
extern: '1'
external_id:
  arxiv:
  - '0710.4052'
intvolume: '       100'
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/0710.4052
month: '02'
oa: 1
oa_version: None
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '6352'
status: public
title: Metastable feshbach molecules in high rotational states
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 100
year: '2008'
...
---
_id: '1039'
abstract:
- lang: eng
  text: Molecular cooling techniques face the hurdle of dissipating translational
    as well as internal energy in the presence of a rich electronic, vibrational,
    and rotational energy spectrum. In our experiment, we create a translationally
    ultracold, dense quantum gas of molecules bound by more than 1000 wave numbers
    in the electronic ground state. Specifically, we stimulate with 80% efficiency,
    a two-photon transfer of molecules associated on a Feshbach resonance from a Bose-Einstein
    condensate of cesium atoms. In the process, the initial loose, long-range electrostatic
    bond of the Feshbach molecule is coherently transformed into a tight chemical
    bond. We demonstrate coherence of the transfer in a Ramsey-type experiment and
    show that the molecular sample is not heated during the transfer. Our results
    show that the preparation of a quantum gas of molecules in specific rovibrational
    states is possible and that the creation of a Bose-Einstein condensate of molecules
    in their rovibronic ground state is within reach.
acknowledgement: " We thank the team of J. Hecker Denschlag, the LevT team in our
  group, and T. Bergeman for very helpful discussions and M. Prevedelli for technical
  assistance. We are indebted to R. Grimm for generous support and gratefully acknowledge
  funding by the Austrian Ministry of Science and Research (Bundesministerium für
  Wissenschaft und Forschung) and the Austrian Science Fund (Fonds zur Förderung der
  wissenschaftlichen Forschung) in the form of a START prize grant and by the European
  Science Foundation in the framework of the EuroQUAM collective research project
  QuDipMol.\r\n"
article_processing_charge: No
arxiv: 1
author:
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Elmar
  full_name: Haller, Elmar
  last_name: Haller
- first_name: Mattias
  full_name: Gustavsson, Mattias
  last_name: Gustavsson
- first_name: Manfred
  full_name: Mark, Manfred
  last_name: Mark
- first_name: Russell
  full_name: Hart, Russell
  last_name: Hart
- first_name: Nadia
  full_name: Bouloufa, Nadia
  last_name: Bouloufa
- first_name: Olivier
  full_name: Dulieu, Olivier
  last_name: Dulieu
- first_name: Helmut
  full_name: Ritsch, Helmut
  last_name: Ritsch
- first_name: Hanns
  full_name: Nägerl, Hanns
  last_name: Nägerl
citation:
  ama: Danzl JG, Haller E, Gustavsson M, et al. Quantum gas of deeply bound ground
    state molecules. <i>Science</i>. 2008;321(5892):1062-1066. doi:<a href="https://doi.org/10.1126/science.1159909">10.1126/science.1159909</a>
  apa: Danzl, J. G., Haller, E., Gustavsson, M., Mark, M., Hart, R., Bouloufa, N.,
    … Nägerl, H. (2008). Quantum gas of deeply bound ground state molecules. <i>Science</i>.
    American Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1159909">https://doi.org/10.1126/science.1159909</a>
  chicago: Danzl, Johann G, Elmar Haller, Mattias Gustavsson, Manfred Mark, Russell
    Hart, Nadia Bouloufa, Olivier Dulieu, Helmut Ritsch, and Hanns Nägerl. “Quantum
    Gas of Deeply Bound Ground State Molecules.” <i>Science</i>. American Association
    for the Advancement of Science, 2008. <a href="https://doi.org/10.1126/science.1159909">https://doi.org/10.1126/science.1159909</a>.
  ieee: J. G. Danzl <i>et al.</i>, “Quantum gas of deeply bound ground state molecules,”
    <i>Science</i>, vol. 321, no. 5892. American Association for the Advancement of
    Science, pp. 1062–1066, 2008.
  ista: Danzl JG, Haller E, Gustavsson M, Mark M, Hart R, Bouloufa N, Dulieu O, Ritsch
    H, Nägerl H. 2008. Quantum gas of deeply bound ground state molecules. Science.
    321(5892), 1062–1066.
  mla: Danzl, Johann G., et al. “Quantum Gas of Deeply Bound Ground State Molecules.”
    <i>Science</i>, vol. 321, no. 5892, American Association for the Advancement of
    Science, 2008, pp. 1062–66, doi:<a href="https://doi.org/10.1126/science.1159909">10.1126/science.1159909</a>.
  short: J.G. Danzl, E. Haller, M. Gustavsson, M. Mark, R. Hart, N. Bouloufa, O. Dulieu,
    H. Ritsch, H. Nägerl, Science 321 (2008) 1062–1066.
date_created: 2018-12-11T11:49:49Z
date_published: 2008-08-22T00:00:00Z
date_updated: 2021-01-12T06:47:50Z
day: '22'
doi: 10.1126/science.1159909
extern: '1'
external_id:
  arxiv:
  - '0806.2284'
intvolume: '       321'
issue: '5892'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/0806.2284
month: '08'
oa: 1
oa_version: None
page: 1062 - 1066
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '6351'
status: public
title: Quantum gas of deeply bound ground state molecules
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 321
year: '2008'
...
---
_id: '10392'
abstract:
- lang: eng
  text: Protonated formylmetallocenes [M(C5H5)(C5H4-CHOH)]+ (M = Fe, Ru) and their
    isomers have been studied at the BP86 and B3LYP levels of density functional theory.
    Oxygen-protonated isomers are the most stable forms in each case, with a plethora
    of ring- or metal-protonated species at least ca. 14 and 10 kcal/mol higher in
    energy for M = Fe and Ru, respectively. The computed rotational barriers around
    the C−C bond connecting the cyclopentadienyl and protonated formyl moieties, ca.
    18 kcal/mol, are indicative of substantial conjugation between these moieties.
    Some of the ring- and iron-protonated species are models for possible intermediates
    in Friedel–Crafts acylation of ferrocene, and the computations provide further
    evidence that exo attack is clearly favored over endo attack of the electrophile
    in this reaction. The structures of the most stable mono- and diprotonated formylferrocenes
    are corroborated by the good agreement between GIAO-B3LYP-computed and experimental
    NMR chemical shifts.
acknowledgement: M.B. wishes to thank Prof. W. Thiel and the Max-Planck-Institut für
  Kohlenforschung for continuing support. A Humboldt fellowship for V.V. is gratefully
  acknowledged. Computations were performed on Compaq XP1000 and ES40 workstations
  as well as on an Intel Xeon PC cluster at the MPI Mülheim. A.S. thanks the Computing
  Center of the University of Zagreb SRCE for allocating computer time on the Isabella
  cluster.
article_processing_charge: No
article_type: original
author:
- first_name: Anđela
  full_name: Šarić, Anđela
  id: bf63d406-f056-11eb-b41d-f263a6566d8b
  last_name: Šarić
  orcid: 0000-0002-7854-2139
- first_name: Valerije
  full_name: Vrček, Valerije
  last_name: Vrček
- first_name: Michael
  full_name: Bühl, Michael
  last_name: Bühl
citation:
  ama: Šarić A, Vrček V, Bühl M. Density functional study of protonated formylmetallocenes.
    <i>Organometallics</i>. 2008;27(3):394-401. doi:<a href="https://doi.org/10.1021/om700916f">10.1021/om700916f</a>
  apa: Šarić, A., Vrček, V., &#38; Bühl, M. (2008). Density functional study of protonated
    formylmetallocenes. <i>Organometallics</i>. American Chemical Society. <a href="https://doi.org/10.1021/om700916f">https://doi.org/10.1021/om700916f</a>
  chicago: Šarić, Anđela, Valerije Vrček, and Michael Bühl. “Density Functional Study
    of Protonated Formylmetallocenes.” <i>Organometallics</i>. American Chemical Society,
    2008. <a href="https://doi.org/10.1021/om700916f">https://doi.org/10.1021/om700916f</a>.
  ieee: A. Šarić, V. Vrček, and M. Bühl, “Density functional study of protonated formylmetallocenes,”
    <i>Organometallics</i>, vol. 27, no. 3. American Chemical Society, pp. 394–401,
    2008.
  ista: Šarić A, Vrček V, Bühl M. 2008. Density functional study of protonated formylmetallocenes.
    Organometallics. 27(3), 394–401.
  mla: Šarić, Anđela, et al. “Density Functional Study of Protonated Formylmetallocenes.”
    <i>Organometallics</i>, vol. 27, no. 3, American Chemical Society, 2008, pp. 394–401,
    doi:<a href="https://doi.org/10.1021/om700916f">10.1021/om700916f</a>.
  short: A. Šarić, V. Vrček, M. Bühl, Organometallics 27 (2008) 394–401.
date_created: 2021-11-29T15:31:06Z
date_published: 2008-01-15T00:00:00Z
date_updated: 2021-11-30T08:04:44Z
day: '15'
doi: 10.1021/om700916f
extern: '1'
intvolume: '        27'
issue: '3'
keyword:
- Inorganic Chemistry
- Organic Chemistry
- Physical and Theoretical Chemistry
language:
- iso: eng
main_file_link:
- url: https://pubs.acs.org/doi/10.1021/om700916f
month: '01'
oa_version: None
page: 394-401
publication: Organometallics
publication_identifier:
  eissn:
  - 1520-6041
  issn:
  - 0276-7333
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Density functional study of protonated formylmetallocenes
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 27
year: '2008'
...
---
_id: '11878'
abstract:
- lang: eng
  text: "Given only the URL of a web page, can we identify its language? This is the
    question that we examine in this paper.\r\nSuch a language classifier is, for
    example, useful for crawlers of web search engines, which frequently try to satisfy
    certain language quotas. To determine the language of uncrawled web pages, they
    have to download the page, which might be wasteful, if the page is not in the
    desired language. With URL-based language classifiers these redundant downloads
    can be avoided.\r\n\r\nWe apply a variety of machine learning algorithms to the
    language identification task and evaluate their performance in extensive experiments
    for five languages: English, French, German, Spanish and Italian. Our best methods
    achieve an F-measure, averaged over all languages, of around .90 for both a random
    sample of 1,260 web page from a large web crawl and for 25k pages from the ODP
    directory. For 5k pages of web search engine results we even achieve an F-measure
    of .96. The achieved recall for these collections is .93, .88 and .95 respectively.
    Two independent human evaluators performed considerably worse on the task, with
    an F-measure of .75 and a typical recall of a mere .67. Using only country-code
    top-level domains, such as .de or .fr yields a good precision, but a typical recall
    of below .60 and an F-measure of around .68."
article_processing_charge: No
article_type: original
author:
- first_name: Eda
  full_name: Baykan, Eda
  last_name: Baykan
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Ingmar
  full_name: Weber, Ingmar
  last_name: Weber
citation:
  ama: Baykan E, Henzinger MH, Weber I. Web page language identification based on
    URLs. <i>Proceedings of the VLDB Endowment</i>. 2008;1(1):176-187. doi:<a href="https://doi.org/10.14778/1453856.1453880">10.14778/1453856.1453880</a>
  apa: Baykan, E., Henzinger, M. H., &#38; Weber, I. (2008). Web page language identification
    based on URLs. <i>Proceedings of the VLDB Endowment</i>. Association for Computing
    Machinery. <a href="https://doi.org/10.14778/1453856.1453880">https://doi.org/10.14778/1453856.1453880</a>
  chicago: Baykan, Eda, Monika H Henzinger, and Ingmar Weber. “Web Page Language Identification
    Based on URLs.” <i>Proceedings of the VLDB Endowment</i>. Association for Computing
    Machinery, 2008. <a href="https://doi.org/10.14778/1453856.1453880">https://doi.org/10.14778/1453856.1453880</a>.
  ieee: E. Baykan, M. H. Henzinger, and I. Weber, “Web page language identification
    based on URLs,” <i>Proceedings of the VLDB Endowment</i>, vol. 1, no. 1. Association
    for Computing Machinery, pp. 176–187, 2008.
  ista: Baykan E, Henzinger MH, Weber I. 2008. Web page language identification based
    on URLs. Proceedings of the VLDB Endowment. 1(1), 176–187.
  mla: Baykan, Eda, et al. “Web Page Language Identification Based on URLs.” <i>Proceedings
    of the VLDB Endowment</i>, vol. 1, no. 1, Association for Computing Machinery,
    2008, pp. 176–87, doi:<a href="https://doi.org/10.14778/1453856.1453880">10.14778/1453856.1453880</a>.
  short: E. Baykan, M.H. Henzinger, I. Weber, Proceedings of the VLDB Endowment 1
    (2008) 176–187.
date_created: 2022-08-16T13:10:11Z
date_published: 2008-08-01T00:00:00Z
date_updated: 2023-02-17T13:55:24Z
day: '01'
doi: 10.14778/1453856.1453880
extern: '1'
intvolume: '         1'
issue: '1'
language:
- iso: eng
month: '08'
oa_version: None
page: 176-187
publication: Proceedings of the VLDB Endowment
publication_identifier:
  issn:
  - 2150-8097
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Web page language identification based on URLs
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2008'
...
---
_id: '12656'
abstract:
- lang: eng
  text: We use meteorological data from two automatic weather stations (AWS) on Juncal
    Norte Glacier, central Chile, to investigate the glacier–climate interaction and
    to test ablation models of different complexity. The semi-arid Central Andes are
    characterized by dry summers, with precipitation close to zero, low relative humidity
    and intense solar radiation. We show that katabatic forcing is dominant both on
    the glacier tongue and in the fore field, and that low humidity and absence of
    clouds cause strong radiative cooling of the glacier surface. Surface albedo is
    basically constant for snow and ice, because of the scarcity of solid precipitation.
    The energy balance of the glacier is simulated for a 2-month period in austral
    summer using two models of different complexity, which differ in the inclusion
    of the heat conduction flux into the snowpack and in the parameterization of the
    incoming longwave radiation. Net shortwave radiation is the dominant component
    of the energy balance. The sensible heat flux is always positive, while both the
    net longwave radiation and latent heat flux are negative. Neglecting the subsurface
    heat flux and corresponding variations in surface temperature leads to an overestimation
    of ablation of 2% over a total of 3695 mm water equivalent (w.e.) at the end of
    the season. Correct modelling of incoming longwave radiation is crucial, and we
    suggest that parameterizations based on vapour pressure and air temperature should
    be used rather than on computed cloud amount. We also used an enhanced temperature-index
    model incorporating the shortwave radiation flux, which has two empirical parameters.
    We apply it both with values of parameters obtained for Alpine glaciers and recalibrated
    on Juncal Norte. The model recalibrated against the correct energy balance simulations
    performs very well. The model parameters respond to the meteorological conditions
    typical of this climatic setting.
article_processing_charge: No
article_type: original
author:
- first_name: Francesca
  full_name: Pellicciotti, Francesca
  id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
  last_name: Pellicciotti
- first_name: Jakob
  full_name: Helbing, Jakob
  last_name: Helbing
- first_name: Andrés
  full_name: Rivera, Andrés
  last_name: Rivera
- first_name: Vincent
  full_name: Favier, Vincent
  last_name: Favier
- first_name: Javier
  full_name: Corripio, Javier
  last_name: Corripio
- first_name: José
  full_name: Araos, José
  last_name: Araos
- first_name: Jean-Emmanuel
  full_name: Sicart, Jean-Emmanuel
  last_name: Sicart
- first_name: Marco
  full_name: Carenzo, Marco
  last_name: Carenzo
citation:
  ama: Pellicciotti F, Helbing J, Rivera A, et al. A study of the energy balance and
    melt regime on Juncal Norte Glacier, semi-arid Andes of central Chile, using melt
    models of different complexity. <i>Hydrological Processes</i>. 2008;22(19):3980-3997.
    doi:<a href="https://doi.org/10.1002/hyp.7085">10.1002/hyp.7085</a>
  apa: Pellicciotti, F., Helbing, J., Rivera, A., Favier, V., Corripio, J., Araos,
    J., … Carenzo, M. (2008). A study of the energy balance and melt regime on Juncal
    Norte Glacier, semi-arid Andes of central Chile, using melt models of different
    complexity. <i>Hydrological Processes</i>. Wiley. <a href="https://doi.org/10.1002/hyp.7085">https://doi.org/10.1002/hyp.7085</a>
  chicago: Pellicciotti, Francesca, Jakob Helbing, Andrés Rivera, Vincent Favier,
    Javier Corripio, José Araos, Jean-Emmanuel Sicart, and Marco Carenzo. “A Study
    of the Energy Balance and Melt Regime on Juncal Norte Glacier, Semi-Arid Andes
    of Central Chile, Using Melt Models of Different Complexity.” <i>Hydrological
    Processes</i>. Wiley, 2008. <a href="https://doi.org/10.1002/hyp.7085">https://doi.org/10.1002/hyp.7085</a>.
  ieee: F. Pellicciotti <i>et al.</i>, “A study of the energy balance and melt regime
    on Juncal Norte Glacier, semi-arid Andes of central Chile, using melt models of
    different complexity,” <i>Hydrological Processes</i>, vol. 22, no. 19. Wiley,
    pp. 3980–3997, 2008.
  ista: Pellicciotti F, Helbing J, Rivera A, Favier V, Corripio J, Araos J, Sicart
    J-E, Carenzo M. 2008. A study of the energy balance and melt regime on Juncal
    Norte Glacier, semi-arid Andes of central Chile, using melt models of different
    complexity. Hydrological Processes. 22(19), 3980–3997.
  mla: Pellicciotti, Francesca, et al. “A Study of the Energy Balance and Melt Regime
    on Juncal Norte Glacier, Semi-Arid Andes of Central Chile, Using Melt Models of
    Different Complexity.” <i>Hydrological Processes</i>, vol. 22, no. 19, Wiley,
    2008, pp. 3980–97, doi:<a href="https://doi.org/10.1002/hyp.7085">10.1002/hyp.7085</a>.
  short: F. Pellicciotti, J. Helbing, A. Rivera, V. Favier, J. Corripio, J. Araos,
    J.-E. Sicart, M. Carenzo, Hydrological Processes 22 (2008) 3980–3997.
date_created: 2023-02-20T08:18:45Z
date_published: 2008-09-15T00:00:00Z
date_updated: 2023-02-20T08:48:33Z
day: '15'
doi: 10.1002/hyp.7085
extern: '1'
intvolume: '        22'
issue: '19'
keyword:
- Water Science and Technology
language:
- iso: eng
month: '09'
oa_version: None
page: 3980-3997
publication: Hydrological Processes
publication_identifier:
  eissn:
  - 1099-1085
  issn:
  - 0885-6087
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: A study of the energy balance and melt regime on Juncal Norte Glacier, semi-arid
  Andes of central Chile, using melt models of different complexity
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 22
year: '2008'
...
---
_id: '1296'
abstract:
- lang: eng
  text: The crystalline-like structure of the optic lobes of the fruit fly Drosophila
    melanogaster has made them a model system for the study of neuronal cell-fate
    determination, axonal path finding, and target selection. For functional studies,
    however, the small size of the constituting visual interneurons has so far presented
    a formidable barrier. We have overcome this problem by establishing in vivo whole-cell
    recordings [1] from genetically targeted visual interneurons of Drosophila. Here,
    we describe the response properties of six motion-sensitive large-field neurons
    in the lobula plate that form a network consisting of individually identifiable,
    directionally selective cells most sensitive to vertical image motion (VS cells
    [2, 3]). Individual VS cell responses to visual motion stimuli exhibit all the
    characteristics that are indicative of presynaptic input from elementary motion
    detectors of the correlation type [4, 5]. Different VS cells possess distinct
    receptive fields that are arranged sequentially along the eye's azimuth, corresponding
    to their characteristic cellular morphology and position within the retinotopically
    organized lobula plate. In addition, lateral connections between individual VS
    cells cause strongly overlapping receptive fields that are wider than expected
    from their dendritic input. Our results suggest that motion vision in different
    dipteran fly species is accomplished in similar circuitries and according to common
    algorithmic rules. The underlying neural mechanisms of population coding within
    the VS cell network and of elementary motion detection, respectively, can now
    be analyzed by the combination of electrophysiology and genetic intervention in
    Drosophila.
acknowledgement: This work was supported by the Max-Planck-Society and by a Human
  Frontier Science Program (HFSP) grant to K. Ito, A.B., and B. Nelson.
author:
- first_name: Maximilian A
  full_name: Maximilian Jösch
  id: 2BD278E6-F248-11E8-B48F-1D18A9856A87
  last_name: Jösch
  orcid: 0000-0002-3937-1330
- first_name: Johannes
  full_name: Plett, Johannes
  last_name: Plett
- first_name: Alexander
  full_name: Borst, Alexander
  last_name: Borst
- first_name: Dierk
  full_name: Reiff, Dierk F
  last_name: Reiff
citation:
  ama: Jösch MA, Plett J, Borst A, Reiff D. Response properties of motion sensitive
    visual interneurons in the Lobula plate of Drosophila melanogaster. <i>Current
    Biology</i>. 2008;18(5):368-374. doi:<a href="https://doi.org/10.1016/j.cub.2008.02.022">10.1016/j.cub.2008.02.022</a>
  apa: Jösch, M. A., Plett, J., Borst, A., &#38; Reiff, D. (2008). Response properties
    of motion sensitive visual interneurons in the Lobula plate of Drosophila melanogaster.
    <i>Current Biology</i>. Cell Press. <a href="https://doi.org/10.1016/j.cub.2008.02.022">https://doi.org/10.1016/j.cub.2008.02.022</a>
  chicago: Jösch, Maximilian A, Johannes Plett, Alexander Borst, and Dierk Reiff.
    “Response Properties of Motion Sensitive Visual Interneurons in the Lobula Plate
    of Drosophila Melanogaster.” <i>Current Biology</i>. Cell Press, 2008. <a href="https://doi.org/10.1016/j.cub.2008.02.022">https://doi.org/10.1016/j.cub.2008.02.022</a>.
  ieee: M. A. Jösch, J. Plett, A. Borst, and D. Reiff, “Response properties of motion
    sensitive visual interneurons in the Lobula plate of Drosophila melanogaster,”
    <i>Current Biology</i>, vol. 18, no. 5. Cell Press, pp. 368–374, 2008.
  ista: Jösch MA, Plett J, Borst A, Reiff D. 2008. Response properties of motion sensitive
    visual interneurons in the Lobula plate of Drosophila melanogaster. Current Biology.
    18(5), 368–374.
  mla: Jösch, Maximilian A., et al. “Response Properties of Motion Sensitive Visual
    Interneurons in the Lobula Plate of Drosophila Melanogaster.” <i>Current Biology</i>,
    vol. 18, no. 5, Cell Press, 2008, pp. 368–74, doi:<a href="https://doi.org/10.1016/j.cub.2008.02.022">10.1016/j.cub.2008.02.022</a>.
  short: M.A. Jösch, J. Plett, A. Borst, D. Reiff, Current Biology 18 (2008) 368–374.
date_created: 2018-12-11T11:51:13Z
date_published: 2008-03-11T00:00:00Z
date_updated: 2021-01-12T06:49:42Z
day: '11'
doi: 10.1016/j.cub.2008.02.022
extern: 1
intvolume: '        18'
issue: '5'
month: '03'
page: 368 - 374
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '5973'
quality_controlled: 0
status: public
title: Response properties of motion sensitive visual interneurons in the Lobula plate
  of Drosophila melanogaster
type: journal_article
volume: 18
year: '2008'
...
---
_id: '3409'
abstract:
- lang: eng
  text: With the introduction of single-molecule force spectroscopy (SMFS) it has
    become possible to directly access the interactions of various molecular systems.
    A bottleneck in conventional SMFS is collecting the large amount of data required
    for statistically meaningful analysis. Currently, atomic force microscopy (AFM)-based
    SMFS requires the user to tediously 'fish' for single molecules. In addition,
    most experimental and environmental conditions must be manually adjusted. Here,
    we developed a fully automated single-molecule force spectroscope. The instrument
    is able to perform SMFS while monitoring and regulating experimental conditions
    such as buffer composition and temperature. Cantilever alignment and calibration
    can also be automatically performed during experiments. This, combined with in-line
    data analysis, enables the instrument, once set up, to perform complete SMFS experiments
    autonomously.
author:
- first_name: Jens
  full_name: Struckmeier, Jens
  last_name: Struckmeier
- first_name: Reiner
  full_name: Wahl, Reiner
  last_name: Wahl
- first_name: Mirko
  full_name: Leuschner, Mirko
  last_name: Leuschner
- first_name: Joao
  full_name: Nunes, Joao
  last_name: Nunes
- first_name: Harald L
  full_name: Harald Janovjak
  id: 33BA6C30-F248-11E8-B48F-1D18A9856A87
  last_name: Janovjak
  orcid: 0000-0002-8023-9315
- first_name: Ulrich
  full_name: Geisler, Ulrich
  last_name: Geisler
- first_name: Gerd
  full_name: Hofmann, Gerd
  last_name: Hofmann
- first_name: Torsten
  full_name: Jähnke, Torsten
  last_name: Jähnke
- first_name: Daniel
  full_name: Mueller, Daniel J
  last_name: Mueller
citation:
  ama: Struckmeier J, Wahl R, Leuschner M, et al. Fully automated single-molecule
    force spectroscopy for screening applications. <i>Nanotechnology</i>. 2008;19(38).
    doi:<a href="https://doi.org/10.1088/0957-4484/19/38/384020">10.1088/0957-4484/19/38/384020</a>
  apa: Struckmeier, J., Wahl, R., Leuschner, M., Nunes, J., Janovjak, H. L., Geisler,
    U., … Mueller, D. (2008). Fully automated single-molecule force spectroscopy for
    screening applications. <i>Nanotechnology</i>. IOP Publishing Ltd. <a href="https://doi.org/10.1088/0957-4484/19/38/384020">https://doi.org/10.1088/0957-4484/19/38/384020</a>
  chicago: Struckmeier, Jens, Reiner Wahl, Mirko Leuschner, Joao Nunes, Harald L Janovjak,
    Ulrich Geisler, Gerd Hofmann, Torsten Jähnke, and Daniel Mueller. “Fully Automated
    Single-Molecule Force Spectroscopy for Screening Applications.” <i>Nanotechnology</i>.
    IOP Publishing Ltd., 2008. <a href="https://doi.org/10.1088/0957-4484/19/38/384020">https://doi.org/10.1088/0957-4484/19/38/384020</a>.
  ieee: J. Struckmeier <i>et al.</i>, “Fully automated single-molecule force spectroscopy
    for screening applications,” <i>Nanotechnology</i>, vol. 19, no. 38. IOP Publishing
    Ltd., 2008.
  ista: Struckmeier J, Wahl R, Leuschner M, Nunes J, Janovjak HL, Geisler U, Hofmann
    G, Jähnke T, Mueller D. 2008. Fully automated single-molecule force spectroscopy
    for screening applications. Nanotechnology. 19(38).
  mla: Struckmeier, Jens, et al. “Fully Automated Single-Molecule Force Spectroscopy
    for Screening Applications.” <i>Nanotechnology</i>, vol. 19, no. 38, IOP Publishing
    Ltd., 2008, doi:<a href="https://doi.org/10.1088/0957-4484/19/38/384020">10.1088/0957-4484/19/38/384020</a>.
  short: J. Struckmeier, R. Wahl, M. Leuschner, J. Nunes, H.L. Janovjak, U. Geisler,
    G. Hofmann, T. Jähnke, D. Mueller, Nanotechnology 19 (2008).
date_created: 2018-12-11T12:03:11Z
date_published: 2008-08-12T00:00:00Z
date_updated: 2021-01-12T07:43:17Z
day: '12'
doi: 10.1088/0957-4484/19/38/384020
extern: 1
intvolume: '        19'
issue: '38'
month: '08'
publication: Nanotechnology
publication_status: published
publisher: IOP Publishing Ltd.
publist_id: '2993'
quality_controlled: 0
status: public
title: Fully automated single-molecule force spectroscopy for screening applications
type: journal_article
volume: 19
year: '2008'
...
---
_id: '3410'
abstract:
- lang: eng
  text: Membrane proteins are involved in essential biological processes such as energy
    conversion, signal transduction, solute transport and secretion. All biological
    processes, also those involving membrane proteins, are steered by molecular interactions.
    Molecular interactions guide the folding and stability of membrane proteins, determine
    their assembly, switch their functional states or mediate signal transduction.
    The sequential steps of molecular interactions driving these processes can be
    described by dynamic energy landscapes. The conceptual energy landscape allows
    to follow the complex reaction pathways of membrane proteins while its modifications
    describe why and how pathways are changed. Single-molecule force spectroscopy
    (SMFS) detects, quantifies and locates interactions within and between membrane
    proteins. SMFS helps to determine how these interactions change with temperature,
    point mutations, oligomerization and the functional states of membrane proteins.
    Applied in different modes, SMFS explores the co-existence and population of reaction
    pathways in the energy landscape of the protein and thus reveals detailed insights
    into local mechanisms, determining its structural and functional relationships.
    Here we review how SMFS extracts the defining parameters of an energy landscape
    such as the barrier position, reaction kinetics and roughness with high precision.
author:
- first_name: Harald L
  full_name: Harald Janovjak
  id: 33BA6C30-F248-11E8-B48F-1D18A9856A87
  last_name: Janovjak
  orcid: 0000-0002-8023-9315
- first_name: Tanuj
  full_name: Sapra, Tanuj K
  last_name: Sapra
- first_name: Alexej
  full_name: Kedrov, Alexej
  last_name: Kedrov
- first_name: Daniel
  full_name: Mueller, Daniel J
  last_name: Mueller
citation:
  ama: 'Janovjak HL, Sapra T, Kedrov A, Mueller D. From valleys to ridges: Exploring
    the energy landscape of single membrane proteins. <i>ChemPhysChem</i>. 2008;9(7):954-966.
    doi:<a href="https://doi.org/10.1002/cphc.200700662">10.1002/cphc.200700662</a>'
  apa: 'Janovjak, H. L., Sapra, T., Kedrov, A., &#38; Mueller, D. (2008). From valleys
    to ridges: Exploring the energy landscape of single membrane proteins. <i>ChemPhysChem</i>.
    Wiley-Blackwell. <a href="https://doi.org/10.1002/cphc.200700662">https://doi.org/10.1002/cphc.200700662</a>'
  chicago: 'Janovjak, Harald L, Tanuj Sapra, Alexej Kedrov, and Daniel Mueller. “From
    Valleys to Ridges: Exploring the Energy Landscape of Single Membrane Proteins.”
    <i>ChemPhysChem</i>. Wiley-Blackwell, 2008. <a href="https://doi.org/10.1002/cphc.200700662">https://doi.org/10.1002/cphc.200700662</a>.'
  ieee: 'H. L. Janovjak, T. Sapra, A. Kedrov, and D. Mueller, “From valleys to ridges:
    Exploring the energy landscape of single membrane proteins,” <i>ChemPhysChem</i>,
    vol. 9, no. 7. Wiley-Blackwell, pp. 954–966, 2008.'
  ista: 'Janovjak HL, Sapra T, Kedrov A, Mueller D. 2008. From valleys to ridges:
    Exploring the energy landscape of single membrane proteins. ChemPhysChem. 9(7),
    954–966.'
  mla: 'Janovjak, Harald L., et al. “From Valleys to Ridges: Exploring the Energy
    Landscape of Single Membrane Proteins.” <i>ChemPhysChem</i>, vol. 9, no. 7, Wiley-Blackwell,
    2008, pp. 954–66, doi:<a href="https://doi.org/10.1002/cphc.200700662">10.1002/cphc.200700662</a>.'
  short: H.L. Janovjak, T. Sapra, A. Kedrov, D. Mueller, ChemPhysChem 9 (2008) 954–966.
date_created: 2018-12-11T12:03:11Z
date_published: 2008-05-02T00:00:00Z
date_updated: 2019-04-26T07:22:27Z
day: '02'
doi: 10.1002/cphc.200700662
extern: 1
intvolume: '         9'
issue: '7'
month: '05'
page: 954 - 966
publication: ChemPhysChem
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2992'
quality_controlled: 0
status: public
title: 'From valleys to ridges: Exploring the energy landscape of single membrane
  proteins'
type: review
volume: 9
year: '2008'
...
---
_id: '3435'
abstract:
- lang: eng
  text: We develop a new method for estimating effective population sizes, Ne, and
    selection coefficients, s, from time-series data of allele frequencies sampled
    from a single diallelic locus. The method is based on calculating transition probabilities,
    using a numerical solution of the diffusion process, and assuming independent
    binomial sampling from this diffusion process at each time point. We apply the
    method in two example applications. First, we estimate selection coefficients
    acting on the CCR5-Δ32 mutation on the basis of published samples of contemporary
    and ancient human DNA. We show that the data are compatible with the assumption
    of s = 0, although moderate amounts of selection acting on this mutation cannot
    be excluded. In our second example, we estimate the selection coefficient acting
    on a mutation segregating in an experimental phage population. We show that the
    selection coefficient acting on this mutation is ~0.43.
author:
- first_name: Jonathan P
  full_name: Jonathan Bollback
  id: 2C6FA9CC-F248-11E8-B48F-1D18A9856A87
  last_name: Bollback
  orcid: 0000-0002-4624-4612
- first_name: Thomas
  full_name: York, Thomas L
  last_name: York
- first_name: Rasmus
  full_name: Nielsen, Rasmus
  last_name: Nielsen
citation:
  ama: Bollback JP, York T, Nielsen R. Estimation of 2Nes From Temporal Allele Frequency
    Data. <i>Genetics</i>. 2008;179(1):497-502. doi:<a href="https://doi.org/10.1534/genetics.107.085019">10.1534/genetics.107.085019</a>
  apa: Bollback, J. P., York, T., &#38; Nielsen, R. (2008). Estimation of 2Nes From
    Temporal Allele Frequency Data. <i>Genetics</i>. Genetics Society of America.
    <a href="https://doi.org/10.1534/genetics.107.085019">https://doi.org/10.1534/genetics.107.085019</a>
  chicago: Bollback, Jonathan P, Thomas York, and Rasmus Nielsen. “Estimation of 2Nes
    From Temporal Allele Frequency Data.” <i>Genetics</i>. Genetics Society of America,
    2008. <a href="https://doi.org/10.1534/genetics.107.085019">https://doi.org/10.1534/genetics.107.085019</a>.
  ieee: J. P. Bollback, T. York, and R. Nielsen, “Estimation of 2Nes From Temporal
    Allele Frequency Data,” <i>Genetics</i>, vol. 179, no. 1. Genetics Society of
    America, pp. 497–502, 2008.
  ista: Bollback JP, York T, Nielsen R. 2008. Estimation of 2Nes From Temporal Allele
    Frequency Data. Genetics. 179(1), 497–502.
  mla: Bollback, Jonathan P., et al. “Estimation of 2Nes From Temporal Allele Frequency
    Data.” <i>Genetics</i>, vol. 179, no. 1, Genetics Society of America, 2008, pp.
    497–502, doi:<a href="https://doi.org/10.1534/genetics.107.085019">10.1534/genetics.107.085019</a>.
  short: J.P. Bollback, T. York, R. Nielsen, Genetics 179 (2008) 497–502.
date_created: 2018-12-11T12:03:19Z
date_published: 2008-05-01T00:00:00Z
date_updated: 2021-01-12T07:43:27Z
day: '01'
doi: 10.1534/genetics.107.085019
extern: 1
intvolume: '       179'
issue: '1'
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2390626
month: '05'
oa: 1
page: 497 - 502
publication: Genetics
publication_status: published
publisher: Genetics Society of America
publist_id: '2965'
quality_controlled: 0
status: public
title: Estimation of 2Nes From Temporal Allele Frequency Data
type: journal_article
volume: 179
year: '2008'
...
---
_id: '3501'
abstract:
- lang: eng
  text: |-
    The Wikipedia is a collaborative encyclopedia: anyone can contribute to its articles simply by clicking on an &quot;edit&quot; button. The open nature of the Wikipedia has been key to its success, but has also created a challenge: how can readers develop an informed opinion on its reliability? We propose a system that computes quantitative values of trust for the text in Wikipedia articles; these trust values provide an indication of text reliability.

    The system uses as input the revision history of each article, as well as information about the reputation of the contributing authors, as provided by a reputation system. The trust of a word in an article is computed on the basis of the reputation of the original author of the word, as well as the reputation of all authors who edited text near the word. The algorithm computes word trust values that vary smoothly across the text; the trust values can be visualized using varying text-background colors. The algorithm ensures that all changes to an article's text are reflected in the trust values, preventing surreptitious content changes.

    We have implemented the proposed system, and we have used it to compute and display the trust of the text of thousands of articles of the English Wikipedia. To validate our trust-computation algorithms, we show that text labeled as low-trust has a significantly higher probability of being edited in the future than text labeled as high-trust.
acknowledgement: 'This research has been partially supported by the CITRIS: Center
  for Information Technology Research in the Interest of Society.'
author:
- first_name: B Thomas
  full_name: Adler, B Thomas
  last_name: Adler
- first_name: Krishnendu
  full_name: Krishnendu Chatterjee
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Luca
  full_name: de Alfaro, Luca
  last_name: De Alfaro
- first_name: Marco
  full_name: Faella, Marco
  last_name: Faella
- first_name: Ian
  full_name: Pye, Ian
  last_name: Pye
- first_name: Vishwanath
  full_name: Raman, Vishwanath
  last_name: Raman
citation:
  ama: 'Adler BT, Chatterjee K, De Alfaro L, Faella M, Pye I, Raman V. Assigning trust
    to Wikipedia content. In: ACM; 2008. doi:<a href="https://doi.org/10.1145/1822258.1822293">10.1145/1822258.1822293</a>'
  apa: 'Adler, B. T., Chatterjee, K., De Alfaro, L., Faella, M., Pye, I., &#38; Raman,
    V. (2008). Assigning trust to Wikipedia content. Presented at the WikiSym: International
    Symposium on Wikis, ACM. <a href="https://doi.org/10.1145/1822258.1822293">https://doi.org/10.1145/1822258.1822293</a>'
  chicago: Adler, B Thomas, Krishnendu Chatterjee, Luca De Alfaro, Marco Faella, Ian
    Pye, and Vishwanath Raman. “Assigning Trust to Wikipedia Content.” ACM, 2008.
    <a href="https://doi.org/10.1145/1822258.1822293">https://doi.org/10.1145/1822258.1822293</a>.
  ieee: 'B. T. Adler, K. Chatterjee, L. De Alfaro, M. Faella, I. Pye, and V. Raman,
    “Assigning trust to Wikipedia content,” presented at the WikiSym: International
    Symposium on Wikis, 2008.'
  ista: 'Adler BT, Chatterjee K, De Alfaro L, Faella M, Pye I, Raman V. 2008. Assigning
    trust to Wikipedia content. WikiSym: International Symposium on Wikis.'
  mla: Adler, B. Thomas, et al. <i>Assigning Trust to Wikipedia Content</i>. ACM,
    2008, doi:<a href="https://doi.org/10.1145/1822258.1822293">10.1145/1822258.1822293</a>.
  short: B.T. Adler, K. Chatterjee, L. De Alfaro, M. Faella, I. Pye, V. Raman, in:,
    ACM, 2008.
conference:
  name: 'WikiSym: International Symposium on Wikis'
date_created: 2018-12-11T12:03:40Z
date_published: 2008-09-10T00:00:00Z
date_updated: 2021-01-12T07:43:53Z
day: '10'
doi: 10.1145/1822258.1822293
extern: 1
month: '09'
publication_status: published
publisher: ACM
publist_id: '2886'
quality_controlled: 0
status: public
title: Assigning trust to Wikipedia content
type: conference
year: '2008'
...
---
_id: '3502'
abstract:
- lang: eng
  text: 'In content-driven reputation systems for collaborative content, users gain
    or lose reputation according to how their contributions fare: authors of long-lived
    contributions gain reputation, while authors of reverted contributions lose reputation.
    Existing content-driven systems are prone to Sybil attacks, in which multiple
    identities, controlled by the same person, perform coordinated actions to increase
    their reputation. We show that content-driven reputation systems can be made resistant
    to such attacks by taking advantage of thefact that the reputation increments
    and decrements depend on content modifications, which are visible to all. We present
    an algorithm for content-driven reputation that prevents a set of identities from
    increasing their maximum reputation without doing any useful work. Here, work
    is considered useful if it causes content to evolve in a direction that is consistent
    with the actions of high-reputation users. We argue that the content modifications
    that require no effort, such as the insertion or deletion of arbitrary text, are
    invariably non-useful. We prove a truthfullness result for the resulting system,
    stating that users who wish to perform a contribution do not gain by employing
    complex contribution schemes, compared to simply performing the contribution at
    once. In particular, splitting the contribution in multiple portions, or employing
    the coordinated actions of multiple identities, do not yield additional reputation.
    Taken together, these results indicate that content-driven systems can be made
    robust with respect to Sybil attacks. Copyright 2008 ACM.'
acknowledgement: 'This research has been partially supported by the CITRIS: Center
  for Information Technology Research in the Interest of Society.'
author:
- first_name: Krishnendu
  full_name: Krishnendu Chatterjee
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Luca
  full_name: de Alfaro, Luca
  last_name: De Alfaro
- first_name: Ian
  full_name: Pye, Ian
  last_name: Pye
citation:
  ama: 'Chatterjee K, De Alfaro L, Pye I. Robust content-driven reputation. In: ACM;
    2008:33-42. doi:<a href="https://doi.org/10.1145/1456377.1456387 ">10.1145/1456377.1456387
    </a>'
  apa: 'Chatterjee, K., De Alfaro, L., &#38; Pye, I. (2008). Robust content-driven
    reputation (pp. 33–42). Presented at the AISec: Artificial Intelligence and Security,
    ACM. <a href="https://doi.org/10.1145/1456377.1456387 ">https://doi.org/10.1145/1456377.1456387
    </a>'
  chicago: Chatterjee, Krishnendu, Luca De Alfaro, and Ian Pye. “Robust Content-Driven
    Reputation,” 33–42. ACM, 2008. <a href="https://doi.org/10.1145/1456377.1456387
    ">https://doi.org/10.1145/1456377.1456387 </a>.
  ieee: 'K. Chatterjee, L. De Alfaro, and I. Pye, “Robust content-driven reputation,”
    presented at the AISec: Artificial Intelligence and Security, 2008, pp. 33–42.'
  ista: 'Chatterjee K, De Alfaro L, Pye I. 2008. Robust content-driven reputation.
    AISec: Artificial Intelligence and Security, 33–42.'
  mla: Chatterjee, Krishnendu, et al. <i>Robust Content-Driven Reputation</i>. ACM,
    2008, pp. 33–42, doi:<a href="https://doi.org/10.1145/1456377.1456387 ">10.1145/1456377.1456387
    </a>.
  short: K. Chatterjee, L. De Alfaro, I. Pye, in:, ACM, 2008, pp. 33–42.
conference:
  name: 'AISec: Artificial Intelligence and Security'
date_created: 2018-12-11T12:03:40Z
date_published: 2008-10-31T00:00:00Z
date_updated: 2021-01-12T07:43:54Z
day: '31'
doi: '10.1145/1456377.1456387 '
extern: 1
month: '10'
page: 33 - 42
publication_status: published
publisher: ACM
publist_id: '2885'
quality_controlled: 0
status: public
title: Robust content-driven reputation
type: conference
year: '2008'
...
