[{"intvolume":"        18","status":"public","author":[{"full_name":"Olofsson, Birgitta","last_name":"Olofsson","first_name":"Birgitta"},{"first_name":"Mario","full_name":"de Bono, Mario","last_name":"de Bono","orcid":"0000-0001-8347-0443","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87"}],"day":"11","citation":{"chicago":"Olofsson, Birgitta, and Mario de Bono. “Sleep: Dozy Worms and Sleepy Flies.” <i>Current Biology</i>. Elsevier, 2008. <a href=\"https://doi.org/10.1016/j.cub.2008.01.002\">https://doi.org/10.1016/j.cub.2008.01.002</a>.","ieee":"B. Olofsson and M. de Bono, “Sleep: dozy worms and sleepy flies,” <i>Current Biology</i>, vol. 18, no. 5. Elsevier, pp. R204–R206, 2008.","apa":"Olofsson, B., &#38; de Bono, M. (2008). Sleep: dozy worms and sleepy flies. <i>Current Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cub.2008.01.002\">https://doi.org/10.1016/j.cub.2008.01.002</a>","short":"B. Olofsson, M. de Bono, Current Biology 18 (2008) R204–R206.","ista":"Olofsson B, de Bono M. 2008. Sleep: dozy worms and sleepy flies. Current Biology. 18(5), R204–R206.","ama":"Olofsson B, de Bono M. Sleep: dozy worms and sleepy flies. <i>Current Biology</i>. 2008;18(5):R204-R206. doi:<a href=\"https://doi.org/10.1016/j.cub.2008.01.002\">10.1016/j.cub.2008.01.002</a>","mla":"Olofsson, Birgitta, and Mario de Bono. “Sleep: Dozy Worms and Sleepy Flies.” <i>Current Biology</i>, vol. 18, no. 5, Elsevier, 2008, pp. R204–06, doi:<a href=\"https://doi.org/10.1016/j.cub.2008.01.002\">10.1016/j.cub.2008.01.002</a>."},"publication_status":"published","type":"journal_article","publication_identifier":{"issn":["0960-9822"]},"extern":"1","_id":"6149","pmid":1,"oa_version":"None","quality_controlled":"1","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","publication":"Current Biology","issue":"5","article_processing_charge":"No","page":"R204-R206","volume":18,"date_updated":"2022-08-25T15:03:41Z","title":"Sleep: dozy worms and sleepy flies","external_id":{"pmid":["18334193"]},"publisher":"Elsevier","language":[{"iso":"eng"}],"month":"03","year":"2008","doi":"10.1016/j.cub.2008.01.002","date_published":"2008-03-11T00:00:00Z","date_created":"2019-03-21T08:23:24Z"},{"type":"journal_article","publication_status":"published","citation":{"ista":"Hausel T, Rodríguez Villegas F. 2008. Mixed Hodge polynomials of character varieties: With an appendix by Nicholas M. Katz. Inventiones Mathematicae. 174(3), 555–624.","short":"T. Hausel, F. Rodríguez Villegas, Inventiones Mathematicae 174 (2008) 555–624.","mla":"Hausel, Tamás, and Fernando Rodríguez Villegas. “Mixed Hodge Polynomials of Character Varieties: With an Appendix by Nicholas M. Katz.” <i>Inventiones Mathematicae</i>, vol. 174, no. 3, Springer, 2008, pp. 555–624, doi:<a href=\"https://doi.org/10.1007/s00222-008-0142-x\">10.1007/s00222-008-0142-x</a>.","ama":"Hausel T, Rodríguez Villegas F. Mixed Hodge polynomials of character varieties: With an appendix by Nicholas M. Katz. <i>Inventiones Mathematicae</i>. 2008;174(3):555-624. doi:<a href=\"https://doi.org/10.1007/s00222-008-0142-x\">10.1007/s00222-008-0142-x</a>","chicago":"Hausel, Tamás, and Fernando Rodríguez Villegas. “Mixed Hodge Polynomials of Character Varieties: With an Appendix by Nicholas M. Katz.” <i>Inventiones Mathematicae</i>. Springer, 2008. <a href=\"https://doi.org/10.1007/s00222-008-0142-x\">https://doi.org/10.1007/s00222-008-0142-x</a>.","apa":"Hausel, T., &#38; Rodríguez Villegas, F. (2008). Mixed Hodge polynomials of character varieties: With an appendix by Nicholas M. Katz. <i>Inventiones Mathematicae</i>. Springer. <a href=\"https://doi.org/10.1007/s00222-008-0142-x\">https://doi.org/10.1007/s00222-008-0142-x</a>","ieee":"T. Hausel and F. Rodríguez Villegas, “Mixed Hodge polynomials of character varieties: With an appendix by Nicholas M. Katz,” <i>Inventiones Mathematicae</i>, vol. 174, no. 3. Springer, pp. 555–624, 2008."},"day":"01","status":"public","author":[{"id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","first_name":"Tamas","full_name":"Tamas Hausel","last_name":"Hausel"},{"first_name":"Fernando","full_name":"Rodríguez Villegas, Fernando","last_name":"Rodríguez Villegas"}],"abstract":[{"text":"We calculate the E-polynomials of certain twisted GL(n,ℂ)-character varieties Mn of Riemann surfaces by counting points over finite fields using the character table of the finite group of Lie-type GL(n, q) and a theorem proved in the appendix by N. Katz. We deduce from this calculation several geometric results, for example, the value of the topological Euler characteristic of the associated PGL(n,ℂ)-character variety. The calculation also leads to several conjectures about the cohomology of Mn: an explicit conjecture for its mixed Hodge polynomial; a conjectured curious hard Lefschetz theorem and a conjecture relating the pure part to absolutely indecomposable representations of a certain quiver. We prove these conjectures for n=2.","lang":"eng"}],"intvolume":"       174","date_updated":"2021-01-12T06:50:54Z","volume":174,"publist_id":"5732","oa":1,"page":"555 - 624","issue":"3","publication":"Inventiones Mathematicae","acknowledgement":"The first author was supported by NSF grants DMS-0305505 and DMS- 0604775 an Alfred Sloan Fellowship and a Royal Society University Research Fellowship. The second author was supported by an NSF grant DMS-0200605.","quality_controlled":0,"_id":"1460","extern":1,"date_published":"2008-12-01T00:00:00Z","doi":"10.1007/s00222-008-0142-x","year":"2008","month":"12","publisher":"Springer","title":"Mixed Hodge polynomials of character varieties: With an appendix by Nicholas M. Katz","main_file_link":[{"url":"http://arxiv.org/abs/math/0612668","open_access":"1"}],"date_created":"2018-12-11T11:52:09Z"},{"page":"1635-1639","publication":"Small","issue":"10","status":"public","intvolume":"         4","type":"journal_article","day":"09","date_created":"2023-08-01T10:30:42Z","language":[{"iso":"eng"}],"scopus_import":"1","publisher":"Wiley","date_published":"2008-10-09T00:00:00Z","article_type":"original","month":"10","oa_version":"None","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"issn":["1613-6810"],"eissn":["1613-6829"]},"extern":"1","pmid":1,"_id":"13422","article_processing_charge":"No","date_updated":"2023-08-08T11:14:50Z","volume":4,"keyword":["Biomaterials","Biotechnology","General Materials Science","General Chemistry"],"author":[{"first_name":"Yanhu","full_name":"Wei, Yanhu","last_name":"Wei"},{"id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","first_name":"Rafal","full_name":"Klajn, Rafal","last_name":"Klajn"},{"last_name":"Pinchuk","full_name":"Pinchuk, Anatoliy O.","first_name":"Anatoliy O."},{"last_name":"Grzybowski","full_name":"Grzybowski, Bartosz A.","first_name":"Bartosz A."}],"abstract":[{"lang":"eng","text":"Make like a leaf: The synthesis and characterization of a family of “flowerlike” Au/Fe3O4 nanoparticles is described, whereby Fe3O4 “leaves” adhere to a gold core (see image). The size and numbers of iron oxide domains can be adjusted flexibly by changing the proportion of the starting materials and the reaction time."}],"citation":{"apa":"Wei, Y., Klajn, R., Pinchuk, A. O., &#38; Grzybowski, B. A. (2008). Synthesis, shape control, and optical properties of hybrid Au/Fe3O4 “nanoflowers.” <i>Small</i>. Wiley. <a href=\"https://doi.org/10.1002/smll.200800511\">https://doi.org/10.1002/smll.200800511</a>","ieee":"Y. Wei, R. Klajn, A. O. Pinchuk, and B. A. Grzybowski, “Synthesis, shape control, and optical properties of hybrid Au/Fe3O4 ‘nanoflowers,’” <i>Small</i>, vol. 4, no. 10. Wiley, pp. 1635–1639, 2008.","chicago":"Wei, Yanhu, Rafal Klajn, Anatoliy O. Pinchuk, and Bartosz A. Grzybowski. “Synthesis, Shape Control, and Optical Properties of Hybrid Au/Fe3O4 ‘Nanoflowers.’” <i>Small</i>. Wiley, 2008. <a href=\"https://doi.org/10.1002/smll.200800511\">https://doi.org/10.1002/smll.200800511</a>.","mla":"Wei, Yanhu, et al. “Synthesis, Shape Control, and Optical Properties of Hybrid Au/Fe3O4 ‘Nanoflowers.’” <i>Small</i>, vol. 4, no. 10, Wiley, 2008, pp. 1635–39, doi:<a href=\"https://doi.org/10.1002/smll.200800511\">10.1002/smll.200800511</a>.","ama":"Wei Y, Klajn R, Pinchuk AO, Grzybowski BA. Synthesis, shape control, and optical properties of hybrid Au/Fe3O4 “nanoflowers.” <i>Small</i>. 2008;4(10):1635-1639. doi:<a href=\"https://doi.org/10.1002/smll.200800511\">10.1002/smll.200800511</a>","ista":"Wei Y, Klajn R, Pinchuk AO, Grzybowski BA. 2008. Synthesis, shape control, and optical properties of hybrid Au/Fe3O4 “nanoflowers”. Small. 4(10), 1635–1639.","short":"Y. Wei, R. Klajn, A.O. Pinchuk, B.A. Grzybowski, Small 4 (2008) 1635–1639."},"publication_status":"published","title":"Synthesis, shape control, and optical properties of hybrid Au/Fe3O4 “nanoflowers”","external_id":{"pmid":["18636405"]},"doi":"10.1002/smll.200800511","year":"2008"},{"title":"Bulk synthesis and surface patterning of nanoporous metals and alloys from supraspherical nanoparticle aggregates","year":"2008","doi":"10.1002/adfm.200800293","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"None","quality_controlled":"1","_id":"13423","extern":"1","publication_identifier":{"eissn":["1616-3028"],"issn":["1616-301X"]},"date_updated":"2023-08-08T11:16:28Z","volume":18,"article_processing_charge":"No","keyword":["Electrochemistry","Condensed Matter Physics","Biomaterials","Electronic","Optical and Magnetic Materials"],"author":[{"id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","last_name":"Klajn","full_name":"Klajn, Rafal","first_name":"Rafal"},{"full_name":"Gray, Timothy P.","last_name":"Gray","first_name":"Timothy P."},{"last_name":"Wesson","full_name":"Wesson, Paul J.","first_name":"Paul J."},{"first_name":"Benjamin D.","full_name":"Myers, Benjamin D.","last_name":"Myers"},{"full_name":"Dravid, Vinayak P.","last_name":"Dravid","first_name":"Vinayak P."},{"last_name":"Smoukov","full_name":"Smoukov, Stoyan K.","first_name":"Stoyan K."},{"first_name":"Bartosz A.","last_name":"Grzybowski","full_name":"Grzybowski, Bartosz A."}],"abstract":[{"lang":"eng","text":"Supraspheres (SS) composed of hundreds to thousands of metal nanoparticles (NPs) and crosslinked by dithiol linkers are assembled into larger structures, which are subsequently converted into nanoporous metals (NMs). Conversion is achieved by heating which removes organic molecules stabilizing the NPs and allows for NP fusion. Heating of SS solutions leads to NMs of overall macroscopic dimensions; localized radiation using collimated electron beam is used to prepare metallized surface micropatterns. Depending on the composition of supraspherical precursors, nanoporous materials composed of up to three metals can be obtained. Strategies for controlling pore size and nanoscale surface roughness of these materials are discussed."}],"publication_status":"published","citation":{"mla":"Klajn, Rafal, et al. “Bulk Synthesis and Surface Patterning of Nanoporous Metals and Alloys from Supraspherical Nanoparticle Aggregates.” <i>Advanced Functional Materials</i>, vol. 18, no. 18, Wiley, 2008, pp. 2763–69, doi:<a href=\"https://doi.org/10.1002/adfm.200800293\">10.1002/adfm.200800293</a>.","ama":"Klajn R, Gray TP, Wesson PJ, et al. Bulk synthesis and surface patterning of nanoporous metals and alloys from supraspherical nanoparticle aggregates. <i>Advanced Functional Materials</i>. 2008;18(18):2763-2769. doi:<a href=\"https://doi.org/10.1002/adfm.200800293\">10.1002/adfm.200800293</a>","short":"R. Klajn, T.P. Gray, P.J. Wesson, B.D. Myers, V.P. Dravid, S.K. Smoukov, B.A. Grzybowski, Advanced Functional Materials 18 (2008) 2763–2769.","ista":"Klajn R, Gray TP, Wesson PJ, Myers BD, Dravid VP, Smoukov SK, Grzybowski BA. 2008. Bulk synthesis and surface patterning of nanoporous metals and alloys from supraspherical nanoparticle aggregates. Advanced Functional Materials. 18(18), 2763–2769.","apa":"Klajn, R., Gray, T. P., Wesson, P. J., Myers, B. D., Dravid, V. P., Smoukov, S. K., &#38; Grzybowski, B. A. (2008). Bulk synthesis and surface patterning of nanoporous metals and alloys from supraspherical nanoparticle aggregates. <i>Advanced Functional Materials</i>. Wiley. <a href=\"https://doi.org/10.1002/adfm.200800293\">https://doi.org/10.1002/adfm.200800293</a>","ieee":"R. Klajn <i>et al.</i>, “Bulk synthesis and surface patterning of nanoporous metals and alloys from supraspherical nanoparticle aggregates,” <i>Advanced Functional Materials</i>, vol. 18, no. 18. Wiley, pp. 2763–2769, 2008.","chicago":"Klajn, Rafal, Timothy P. Gray, Paul J. Wesson, Benjamin D. Myers, Vinayak P. Dravid, Stoyan K. Smoukov, and Bartosz A. Grzybowski. “Bulk Synthesis and Surface Patterning of Nanoporous Metals and Alloys from Supraspherical Nanoparticle Aggregates.” <i>Advanced Functional Materials</i>. Wiley, 2008. <a href=\"https://doi.org/10.1002/adfm.200800293\">https://doi.org/10.1002/adfm.200800293</a>."},"date_created":"2023-08-01T10:30:57Z","language":[{"iso":"eng"}],"publisher":"Wiley","scopus_import":"1","article_type":"original","date_published":"2008-09-23T00:00:00Z","month":"09","page":"2763-2769","issue":"18","publication":"Advanced Functional Materials","status":"public","intvolume":"        18","type":"journal_article","day":"23"},{"date_published":"2008-10-01T00:00:00Z","doi":"10.1016/j.tig.2008.08.003","year":"2008","month":"10","publisher":"Elsevier","title":"Nested genes and increasing organizational complexity of metazoan genomes","date_created":"2018-12-11T11:49:08Z","type":"journal_article","publication_status":"published","day":"01","citation":{"chicago":"Assis, Raquel, Alexey Kondrashov, Eugene Koonin, and Fyodor Kondrashov. “Nested Genes and Increasing Organizational Complexity of Metazoan Genomes.” <i>Trends in Genetics</i>. Elsevier, 2008. <a href=\"https://doi.org/10.1016/j.tig.2008.08.003\">https://doi.org/10.1016/j.tig.2008.08.003</a>.","apa":"Assis, R., Kondrashov, A., Koonin, E., &#38; Kondrashov, F. (2008). Nested genes and increasing organizational complexity of metazoan genomes. <i>Trends in Genetics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.tig.2008.08.003\">https://doi.org/10.1016/j.tig.2008.08.003</a>","ieee":"R. Assis, A. Kondrashov, E. Koonin, and F. Kondrashov, “Nested genes and increasing organizational complexity of metazoan genomes,” <i>Trends in Genetics</i>, vol. 24, no. 10. Elsevier, pp. 475–478, 2008.","short":"R. Assis, A. Kondrashov, E. Koonin, F. Kondrashov, Trends in Genetics 24 (2008) 475–478.","ista":"Assis R, Kondrashov A, Koonin E, Kondrashov F. 2008. Nested genes and increasing organizational complexity of metazoan genomes. Trends in Genetics. 24(10), 475–478.","mla":"Assis, Raquel, et al. “Nested Genes and Increasing Organizational Complexity of Metazoan Genomes.” <i>Trends in Genetics</i>, vol. 24, no. 10, Elsevier, 2008, pp. 475–78, doi:<a href=\"https://doi.org/10.1016/j.tig.2008.08.003\">10.1016/j.tig.2008.08.003</a>.","ama":"Assis R, Kondrashov A, Koonin E, Kondrashov F. Nested genes and increasing organizational complexity of metazoan genomes. <i>Trends in Genetics</i>. 2008;24(10):475-478. doi:<a href=\"https://doi.org/10.1016/j.tig.2008.08.003\">10.1016/j.tig.2008.08.003</a>"},"author":[{"first_name":"Raquel","last_name":"Assis","full_name":"Assis, Raquel"},{"first_name":"Alexey","full_name":"Kondrashov, Alexey S","last_name":"Kondrashov"},{"full_name":"Koonin, Eugene V","last_name":"Koonin","first_name":"Eugene"},{"first_name":"Fyodor","last_name":"Kondrashov","full_name":"Fyodor Kondrashov","orcid":"0000-0001-8243-4694","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87"}],"status":"public","abstract":[{"lang":"eng","text":"The most common form of protein-coding gene overlap in eukaryotes is a simple nested structure, whereby one gene is embedded in an intron of another. Analysis of nested protein-coding genes in vertebrates, fruit flies and nematodes revealed substantially higher rates of evolutionary gains than losses. The accumulation of nested gene structures could not be attributed to any obvious functional relationships between the genes involved and represents an increase of the organizational complexity of animal genomes via a neutral process."}],"intvolume":"        24","publist_id":"6743","volume":24,"date_updated":"2021-01-12T08:21:49Z","page":"475 - 478","issue":"10","publication":"Trends in Genetics","quality_controlled":0,"_id":"907","extern":1},{"volume":456,"oa":1,"date_updated":"2021-12-14T08:54:36Z","article_processing_charge":"No","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","oa_version":"Submitted Version","quality_controlled":"1","_id":"9457","pmid":1,"extern":"1","publication_identifier":{"eissn":["1476-4687"],"issn":["0028-0836"]},"publication_status":"published","citation":{"mla":"Zilberman, Daniel, et al. “Histone H2A.Z and DNA Methylation Are Mutually Antagonistic Chromatin Marks.” <i>Nature</i>, vol. 456, no. 7218, Springer Nature, 2008, pp. 125–29, doi:<a href=\"https://doi.org/10.1038/nature07324\">10.1038/nature07324</a>.","ama":"Zilberman D, Coleman-Derr D, Ballinger T, Henikoff S. Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. <i>Nature</i>. 2008;456(7218):125-129. doi:<a href=\"https://doi.org/10.1038/nature07324\">10.1038/nature07324</a>","ista":"Zilberman D, Coleman-Derr D, Ballinger T, Henikoff S. 2008. Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature. 456(7218), 125–129.","short":"D. Zilberman, D. Coleman-Derr, T. Ballinger, S. Henikoff, Nature 456 (2008) 125–129.","ieee":"D. Zilberman, D. Coleman-Derr, T. Ballinger, and S. Henikoff, “Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks,” <i>Nature</i>, vol. 456, no. 7218. Springer Nature, pp. 125–129, 2008.","apa":"Zilberman, D., Coleman-Derr, D., Ballinger, T., &#38; Henikoff, S. (2008). Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nature07324\">https://doi.org/10.1038/nature07324</a>","chicago":"Zilberman, Daniel, Devin Coleman-Derr, Tracy Ballinger, and Steven Henikoff. “Histone H2A.Z and DNA Methylation Are Mutually Antagonistic Chromatin Marks.” <i>Nature</i>. Springer Nature, 2008. <a href=\"https://doi.org/10.1038/nature07324\">https://doi.org/10.1038/nature07324</a>."},"author":[{"orcid":"0000-0002-0123-8649","full_name":"Zilberman, Daniel","last_name":"Zilberman","first_name":"Daniel","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1"},{"last_name":"Coleman-Derr","full_name":"Coleman-Derr, Devin","first_name":"Devin"},{"first_name":"Tracy","full_name":"Ballinger, Tracy","last_name":"Ballinger"},{"last_name":"Henikoff","full_name":"Henikoff, Steven","first_name":"Steven"}],"keyword":["Multidisciplinary"],"abstract":[{"lang":"eng","text":"Eukaryotic chromatin is separated into functional domains differentiated by posttranslational histone modifications, histone variants, and DNA methylation1–6. Methylation is associated with repression of transcriptional initiation in plants and animals, and is frequently found in transposable elements. Proper methylation patterns are critical for eukaryotic development4,5, and aberrant methylation-induced silencing of tumor suppressor genes is a common feature of human cancer7. In contrast to methylation, the histone variant H2A.Z is preferentially deposited by the Swr1 ATPase complex near 5′ ends of genes where it promotes transcriptional competence8–20. How DNA methylation and H2A.Z influence transcription remains largely unknown. Here we show that in the plant Arabidopsis thaliana, regions of DNA methylation are quantitatively deficient in H2A.Z. Exclusion of H2A.Z is seen at sites of DNA methylation in the bodies of actively transcribed genes and in methylated transposons. Mutation of the MET1 DNA methyltransferase, which causes both losses and gains of DNA methylation4,5, engenders opposite changes in H2A.Z deposition, while mutation of the PIE1 subunit of the Swr1 complex that deposits H2A.Z17 leads to genome-wide hypermethylation. Our findings indicate that DNA methylation can influence chromatin structure and effect gene silencing by excluding H2A.Z, and that H2A.Z protects genes from DNA methylation."}],"main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877514/"}],"doi":"10.1038/nature07324","year":"2008","title":"Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks","external_id":{"pmid":["18815594"]},"page":"125-129","issue":"7218","publication":"Nature","type":"journal_article","day":"06","status":"public","intvolume":"       456","department":[{"_id":"DaZi"}],"date_created":"2021-06-04T11:49:32Z","article_type":"letter_note","date_published":"2008-11-06T00:00:00Z","month":"11","language":[{"iso":"eng"}],"publisher":"Springer Nature","scopus_import":"1"},{"intvolume":"        11","status":"public","type":"journal_article","publication":"Current Opinion in Plant Biology","issue":"5","page":"554-559","scopus_import":"1","publisher":"Elsevier ","language":[{"iso":"eng"}],"month":"10","article_type":"review","date_published":"2008-10-01T00:00:00Z","date_created":"2021-06-08T13:13:37Z","department":[{"_id":"DaZi"}],"abstract":[{"lang":"eng","text":"DNA methylation is an ancient process found in all domains of life. Although the enzymes that mediate methylation have remained highly conserved, DNA methylation has been adapted for a variety of uses throughout evolution, including defense against transposable elements and control of gene expression. Defects in DNA methylation are linked to human diseases, including cancer. Methylation has been lost several times in the course of animal and fungal evolution, thus limiting the opportunity for study in common model organisms. In the past decade, plants have emerged as a premier model system for genetic dissection of DNA methylation. A recent combination of plant genetics with powerful genomic approaches has led to a number of exciting discoveries and promises many more."}],"author":[{"id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","first_name":"Daniel","last_name":"Zilberman","full_name":"Zilberman, Daniel","orcid":"0000-0002-0123-8649"}],"citation":{"ama":"Zilberman D. The evolving functions of DNA methylation. <i>Current Opinion in Plant Biology</i>. 2008;11(5):554-559. doi:<a href=\"https://doi.org/10.1016/j.pbi.2008.07.004\">10.1016/j.pbi.2008.07.004</a>","mla":"Zilberman, Daniel. “The Evolving Functions of DNA Methylation.” <i>Current Opinion in Plant Biology</i>, vol. 11, no. 5, Elsevier , 2008, pp. 554–59, doi:<a href=\"https://doi.org/10.1016/j.pbi.2008.07.004\">10.1016/j.pbi.2008.07.004</a>.","ista":"Zilberman D. 2008. The evolving functions of DNA methylation. Current Opinion in Plant Biology. 11(5), 554–559.","short":"D. Zilberman, Current Opinion in Plant Biology 11 (2008) 554–559.","ieee":"D. Zilberman, “The evolving functions of DNA methylation,” <i>Current Opinion in Plant Biology</i>, vol. 11, no. 5. Elsevier , pp. 554–559, 2008.","apa":"Zilberman, D. (2008). The evolving functions of DNA methylation. <i>Current Opinion in Plant Biology</i>. Elsevier . <a href=\"https://doi.org/10.1016/j.pbi.2008.07.004\">https://doi.org/10.1016/j.pbi.2008.07.004</a>","chicago":"Zilberman, Daniel. “The Evolving Functions of DNA Methylation.” <i>Current Opinion in Plant Biology</i>. Elsevier , 2008. <a href=\"https://doi.org/10.1016/j.pbi.2008.07.004\">https://doi.org/10.1016/j.pbi.2008.07.004</a>."},"publication_status":"published","publication_identifier":{"issn":["1369-5266"]},"extern":"1","_id":"9537","pmid":1,"oa_version":"None","quality_controlled":"1","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","article_processing_charge":"No","date_updated":"2021-12-14T08:54:07Z","volume":11,"title":"The evolving functions of DNA methylation","external_id":{"pmid":["18774331"]},"doi":"10.1016/j.pbi.2008.07.004","year":"2008"},{"doi":"10.1007/s11232-008-0026-7","year":"2008","month":"01","date_published":"2008-01-01T00:00:00Z","publisher":"Elsevier","title":"Nonlinear algebra and Bogoliubov's recursion","main_file_link":[{"url":"https://arxiv.org/abs/hep-th/0703258","open_access":"1"}],"date_created":"2018-12-11T11:49:26Z","publication_status":"published","citation":{"ama":"Morozov A, Serbyn M. Nonlinear algebra and Bogoliubov’s recursion. <i>Theoretical and Mathematical Physics</i>. 2008;154(2):270-293. doi:<a href=\"https://doi.org/10.1007/s11232-008-0026-7\">10.1007/s11232-008-0026-7</a>","mla":"Morozov, Alexei, and Maksym Serbyn. “Nonlinear Algebra and Bogoliubov’s Recursion.” <i>Theoretical and Mathematical Physics</i>, vol. 154, no. 2, Elsevier, 2008, pp. 270–93, doi:<a href=\"https://doi.org/10.1007/s11232-008-0026-7\">10.1007/s11232-008-0026-7</a>.","ista":"Morozov A, Serbyn M. 2008. Nonlinear algebra and Bogoliubov’s recursion. Theoretical and Mathematical Physics. 154(2), 270–293.","short":"A. Morozov, M. Serbyn, Theoretical and Mathematical Physics 154 (2008) 270–293.","apa":"Morozov, A., &#38; Serbyn, M. (2008). Nonlinear algebra and Bogoliubov’s recursion. <i>Theoretical and Mathematical Physics</i>. Elsevier. <a href=\"https://doi.org/10.1007/s11232-008-0026-7\">https://doi.org/10.1007/s11232-008-0026-7</a>","ieee":"A. Morozov and M. Serbyn, “Nonlinear algebra and Bogoliubov’s recursion,” <i>Theoretical and Mathematical Physics</i>, vol. 154, no. 2. Elsevier, pp. 270–293, 2008.","chicago":"Morozov, Alexei, and Maksym Serbyn. “Nonlinear Algebra and Bogoliubov’s Recursion.” <i>Theoretical and Mathematical Physics</i>. Elsevier, 2008. <a href=\"https://doi.org/10.1007/s11232-008-0026-7\">https://doi.org/10.1007/s11232-008-0026-7</a>."},"day":"01","type":"journal_article","intvolume":"       154","abstract":[{"text":"We give many examples of applying Bogoliubov's forest formula to iterative solutions of various nonlinear equations. The same formula describes an extremely wide class of objects, from an ordinary quadratic equation to renormalization in quantum field theory.","lang":"eng"}],"status":"public","author":[{"full_name":"Morozov, Alexei Y","last_name":"Morozov","first_name":"Alexei"},{"full_name":"Maksym Serbyn","last_name":"Serbyn","orcid":"0000-0002-2399-5827","first_name":"Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87"}],"issue":"2","publication":"Theoretical and Mathematical Physics","date_updated":"2021-01-12T08:22:17Z","volume":154,"oa":1,"publist_id":"6437","page":"270 - 293","_id":"965","extern":1,"acknowledgement":"This work is supported in part by the Dynasty Foundation (M. N. S.),  the\nRussian Foundation for Basic Research (Grant No\ns. 07-02-00878 and 07-02-00645), a joint grant (Grant\nNo. 06-01-92059-CE), the NWO (Project No. 047.011.2004.026), INTAS (Grant No. 05-1000008-7865), the\nProgram for Supporting Leading Scientific School\ns (Grant No. NSh-8004.2006.2), and also by a project\n(Project No. ANR-05-BLAN-0029-01, A. Yu. M.).","quality_controlled":0},{"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/0710.5083"}],"title":"Control of interaction-induced dephasing of bloch oscillations","external_id":{"arxiv":["0710.5083"]},"year":"2008","doi":"10.1103/PhysRevLett.100.080404","_id":"1036","extern":"1","acknowledgement":"We thank A. Daley for theoretical support and for help with\r\nsetting  up the  numerical  calculations  and  A. Buchleitner\r\nand  his  group  for  useful  discussions.  We  are  grateful  to\r\nA. Liem and H. Zellmer for valuable assistance in setting\r\nup the 1064 nm fiber amplifier system. We acknowledge\r\ncontributions  by  P.  Unterwaditzer  and  T.  Flir  during  the\r\nearly   stages   of   the   experiment.   We   are   indebted   to\r\nR.  Grimm  for  generous  support  and  gratefully  acknowledge  funding  by  the  Austrian  Ministry  of  Science  and\r\nResearch (BMWF) and the Austrian Science Fund (FWF).","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"None","arxiv":1,"date_updated":"2021-01-12T06:47:49Z","oa":1,"volume":100,"publist_id":"6353","article_processing_charge":"No","abstract":[{"text":"We report on the control of interaction-induced dephasing of Bloch oscillations for an atomic Bose-Einstein condensate in an optical lattice. We quantify the dephasing in terms of the width of the quasimomentum distribution and measure its dependence on time for different interaction strengths which we control by means of a Feshbach resonance. For minimal interaction, the dephasing time is increased from a few to more than 20 thousand Bloch oscillation periods, allowing us to realize a BEC-based atom interferometer in the noninteracting limit.","lang":"eng"}],"author":[{"first_name":"Mattias","last_name":"Gustavsson","full_name":"Gustavsson, Mattias"},{"first_name":"Elmar","last_name":"Haller","full_name":"Haller, Elmar"},{"last_name":"Mark","full_name":"Mark, Manfred","first_name":"Manfred"},{"orcid":"0000-0001-8559-3973","full_name":"Danzl, Johann G","last_name":"Danzl","first_name":"Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Rojas Kopeinig, Gabriel","last_name":"Rojas Kopeinig","first_name":"Gabriel"},{"last_name":"Nägerl","full_name":"Nägerl, Hanns","first_name":"Hanns"}],"publication_status":"published","citation":{"chicago":"Gustavsson, Mattias, Elmar Haller, Manfred Mark, Johann G Danzl, Gabriel Rojas Kopeinig, and Hanns Nägerl. “Control of Interaction-Induced Dephasing of Bloch Oscillations.” <i>Physical Review Letters</i>. American Physical Society, 2008. <a href=\"https://doi.org/10.1103/PhysRevLett.100.080404\">https://doi.org/10.1103/PhysRevLett.100.080404</a>.","ieee":"M. Gustavsson, E. Haller, M. Mark, J. G. Danzl, G. Rojas Kopeinig, and H. Nägerl, “Control of interaction-induced dephasing of bloch oscillations,” <i>Physical Review Letters</i>, vol. 100, no. 8. American Physical Society, 2008.","apa":"Gustavsson, M., Haller, E., Mark, M., Danzl, J. G., Rojas Kopeinig, G., &#38; Nägerl, H. (2008). Control of interaction-induced dephasing of bloch oscillations. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.100.080404\">https://doi.org/10.1103/PhysRevLett.100.080404</a>","short":"M. Gustavsson, E. Haller, M. Mark, J.G. Danzl, G. Rojas Kopeinig, H. Nägerl, Physical Review Letters 100 (2008).","ista":"Gustavsson M, Haller E, Mark M, Danzl JG, Rojas Kopeinig G, Nägerl H. 2008. Control of interaction-induced dephasing of bloch oscillations. Physical Review Letters. 100(8).","ama":"Gustavsson M, Haller E, Mark M, Danzl JG, Rojas Kopeinig G, Nägerl H. Control of interaction-induced dephasing of bloch oscillations. <i>Physical Review Letters</i>. 2008;100(8). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.100.080404\">10.1103/PhysRevLett.100.080404</a>","mla":"Gustavsson, Mattias, et al. “Control of Interaction-Induced Dephasing of Bloch Oscillations.” <i>Physical Review Letters</i>, vol. 100, no. 8, American Physical Society, 2008, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.100.080404\">10.1103/PhysRevLett.100.080404</a>."},"date_created":"2018-12-11T11:49:48Z","publisher":"American Physical Society","language":[{"iso":"eng"}],"month":"02","date_published":"2008-02-28T00:00:00Z","issue":"8","publication":"Physical Review Letters","intvolume":"       100","status":"public","day":"28","type":"journal_article"},{"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/0710.4052"}],"doi":"10.1103/PhysRevLett.100.083002","year":"2008","title":"Metastable feshbach molecules in high rotational states","external_id":{"arxiv":["0710.4052"]},"date_updated":"2021-01-12T06:47:50Z","volume":100,"publist_id":"6352","oa":1,"article_processing_charge":"No","arxiv":1,"acknowledgement":"We thank S. Du ̈rr and T. Volz for fruitful discussions. We acknowledge support by the Austrian Science Fund (FWF) within No. SFB 15 (project part 16). S.K. is supported within the Marie Curie Intra-European Program of the European Commission. F.F. is supported within the Lise Meitner program of the FWF.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"None","_id":"1037","extern":"1","publication_status":"published","citation":{"ieee":"S. Knoop <i>et al.</i>, “Metastable feshbach molecules in high rotational states,” <i>Physical Review Letters</i>, vol. 100, no. 8. American Physical Society, 2008.","apa":"Knoop, S., Mark, M., Ferlaino, F., Danzl, J. G., Kraemer, T., Nägerl, H., &#38; Grimm, R. (2008). Metastable feshbach molecules in high rotational states. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.100.083002\">https://doi.org/10.1103/PhysRevLett.100.083002</a>","chicago":"Knoop, Steven, Michael Mark, Francesca Ferlaino, Johann G Danzl, Tobias Kraemer, Hanns Nägerl, and Rudolf Grimm. “Metastable Feshbach Molecules in High Rotational States.” <i>Physical Review Letters</i>. American Physical Society, 2008. <a href=\"https://doi.org/10.1103/PhysRevLett.100.083002\">https://doi.org/10.1103/PhysRevLett.100.083002</a>.","ama":"Knoop S, Mark M, Ferlaino F, et al. Metastable feshbach molecules in high rotational states. <i>Physical Review Letters</i>. 2008;100(8). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.100.083002\">10.1103/PhysRevLett.100.083002</a>","mla":"Knoop, Steven, et al. “Metastable Feshbach Molecules in High Rotational States.” <i>Physical Review Letters</i>, vol. 100, no. 8, American Physical Society, 2008, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.100.083002\">10.1103/PhysRevLett.100.083002</a>.","short":"S. Knoop, M. Mark, F. Ferlaino, J.G. Danzl, T. Kraemer, H. Nägerl, R. Grimm, Physical Review Letters 100 (2008).","ista":"Knoop S, Mark M, Ferlaino F, Danzl JG, Kraemer T, Nägerl H, Grimm R. 2008. Metastable feshbach molecules in high rotational states. Physical Review Letters. 100(8)."},"author":[{"first_name":"Steven","last_name":"Knoop","full_name":"Knoop, Steven"},{"first_name":"Michael","last_name":"Mark","full_name":"Mark, Michael"},{"first_name":"Francesca","full_name":"Ferlaino, Francesca","last_name":"Ferlaino"},{"id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","full_name":"Danzl, Johann G","last_name":"Danzl","orcid":"0000-0001-8559-3973","first_name":"Johann G"},{"first_name":"Tobias","last_name":"Kraemer","full_name":"Kraemer, Tobias"},{"last_name":"Nägerl","full_name":"Nägerl, Hanns","first_name":"Hanns"},{"full_name":"Grimm, Rudolf","last_name":"Grimm","first_name":"Rudolf"}],"abstract":[{"text":"We experimentally demonstrate Cs2 Feshbach molecules well above the dissociation threshold, which are stable against spontaneous decay on the time scale of 1s. An optically trapped sample of ultracold dimers is prepared in a high rotational state and magnetically tuned into a region with a negative binding energy. The metastable character of these molecules arises from the large centrifugal barrier in combination with negligible coupling to states with low rotational angular momentum. A sharp onset of dissociation with increasing magnetic field is mediated by a crossing with a lower rotational dimer state and facilitates dissociation on demand with a well-defined energy.","lang":"eng"}],"date_created":"2018-12-11T11:49:49Z","date_published":"2008-02-29T00:00:00Z","month":"02","language":[{"iso":"eng"}],"publisher":"American Physical Society","issue":"8","publication":"Physical Review Letters","type":"journal_article","day":"29","status":"public","intvolume":"       100"},{"type":"journal_article","day":"22","status":"public","intvolume":"       321","page":"1062 - 1066","issue":"5892","publication":"Science","date_published":"2008-08-22T00:00:00Z","month":"08","language":[{"iso":"eng"}],"publisher":"American Association for the Advancement of Science","date_created":"2018-12-11T11:49:49Z","publication_status":"published","citation":{"mla":"Danzl, Johann G., et al. “Quantum Gas of Deeply Bound Ground State Molecules.” <i>Science</i>, vol. 321, no. 5892, American Association for the Advancement of Science, 2008, pp. 1062–66, doi:<a href=\"https://doi.org/10.1126/science.1159909\">10.1126/science.1159909</a>.","ama":"Danzl JG, Haller E, Gustavsson M, et al. Quantum gas of deeply bound ground state molecules. <i>Science</i>. 2008;321(5892):1062-1066. doi:<a href=\"https://doi.org/10.1126/science.1159909\">10.1126/science.1159909</a>","ista":"Danzl JG, Haller E, Gustavsson M, Mark M, Hart R, Bouloufa N, Dulieu O, Ritsch H, Nägerl H. 2008. Quantum gas of deeply bound ground state molecules. Science. 321(5892), 1062–1066.","short":"J.G. Danzl, E. Haller, M. Gustavsson, M. Mark, R. Hart, N. Bouloufa, O. Dulieu, H. Ritsch, H. Nägerl, Science 321 (2008) 1062–1066.","apa":"Danzl, J. G., Haller, E., Gustavsson, M., Mark, M., Hart, R., Bouloufa, N., … Nägerl, H. (2008). Quantum gas of deeply bound ground state molecules. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1159909\">https://doi.org/10.1126/science.1159909</a>","ieee":"J. G. Danzl <i>et al.</i>, “Quantum gas of deeply bound ground state molecules,” <i>Science</i>, vol. 321, no. 5892. American Association for the Advancement of Science, pp. 1062–1066, 2008.","chicago":"Danzl, Johann G, Elmar Haller, Mattias Gustavsson, Manfred Mark, Russell Hart, Nadia Bouloufa, Olivier Dulieu, Helmut Ritsch, and Hanns Nägerl. “Quantum Gas of Deeply Bound Ground State Molecules.” <i>Science</i>. American Association for the Advancement of Science, 2008. <a href=\"https://doi.org/10.1126/science.1159909\">https://doi.org/10.1126/science.1159909</a>."},"author":[{"first_name":"Johann G","full_name":"Danzl, Johann G","last_name":"Danzl","orcid":"0000-0001-8559-3973","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Haller, Elmar","last_name":"Haller","first_name":"Elmar"},{"full_name":"Gustavsson, Mattias","last_name":"Gustavsson","first_name":"Mattias"},{"full_name":"Mark, Manfred","last_name":"Mark","first_name":"Manfred"},{"first_name":"Russell","last_name":"Hart","full_name":"Hart, Russell"},{"full_name":"Bouloufa, Nadia","last_name":"Bouloufa","first_name":"Nadia"},{"first_name":"Olivier","full_name":"Dulieu, Olivier","last_name":"Dulieu"},{"last_name":"Ritsch","full_name":"Ritsch, Helmut","first_name":"Helmut"},{"first_name":"Hanns","last_name":"Nägerl","full_name":"Nägerl, Hanns"}],"abstract":[{"lang":"eng","text":"Molecular cooling techniques face the hurdle of dissipating translational as well as internal energy in the presence of a rich electronic, vibrational, and rotational energy spectrum. In our experiment, we create a translationally ultracold, dense quantum gas of molecules bound by more than 1000 wave numbers in the electronic ground state. Specifically, we stimulate with 80% efficiency, a two-photon transfer of molecules associated on a Feshbach resonance from a Bose-Einstein condensate of cesium atoms. In the process, the initial loose, long-range electrostatic bond of the Feshbach molecule is coherently transformed into a tight chemical bond. We demonstrate coherence of the transfer in a Ramsey-type experiment and show that the molecular sample is not heated during the transfer. Our results show that the preparation of a quantum gas of molecules in specific rovibrational states is possible and that the creation of a Bose-Einstein condensate of molecules in their rovibronic ground state is within reach."}],"date_updated":"2021-01-12T06:47:50Z","volume":321,"oa":1,"publist_id":"6351","article_processing_charge":"No","arxiv":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":" We thank the team of J. Hecker Denschlag, the LevT team in our group, and T. Bergeman for very helpful discussions and M. Prevedelli for technical assistance. We are indebted to R. Grimm for generous support and gratefully acknowledge funding by the Austrian Ministry of Science and Research (Bundesministerium für Wissenschaft und Forschung) and the Austrian Science Fund (Fonds zur Förderung der wissenschaftlichen Forschung) in the form of a START prize grant and by the European Science Foundation in the framework of the EuroQUAM collective research project QuDipMol.\r\n","oa_version":"None","_id":"1039","extern":"1","year":"2008","doi":"10.1126/science.1159909","title":"Quantum gas of deeply bound ground state molecules","external_id":{"arxiv":["0806.2284"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/0806.2284"}]},{"type":"journal_article","day":"15","status":"public","intvolume":"        27","page":"394-401","issue":"3","publication":"Organometallics","date_published":"2008-01-15T00:00:00Z","article_type":"original","month":"01","language":[{"iso":"eng"}],"publisher":"American Chemical Society","scopus_import":"1","date_created":"2021-11-29T15:31:06Z","publication_status":"published","citation":{"chicago":"Šarić, Anđela, Valerije Vrček, and Michael Bühl. “Density Functional Study of Protonated Formylmetallocenes.” <i>Organometallics</i>. American Chemical Society, 2008. <a href=\"https://doi.org/10.1021/om700916f\">https://doi.org/10.1021/om700916f</a>.","ieee":"A. Šarić, V. Vrček, and M. Bühl, “Density functional study of protonated formylmetallocenes,” <i>Organometallics</i>, vol. 27, no. 3. American Chemical Society, pp. 394–401, 2008.","apa":"Šarić, A., Vrček, V., &#38; Bühl, M. (2008). Density functional study of protonated formylmetallocenes. <i>Organometallics</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/om700916f\">https://doi.org/10.1021/om700916f</a>","short":"A. Šarić, V. Vrček, M. Bühl, Organometallics 27 (2008) 394–401.","ista":"Šarić A, Vrček V, Bühl M. 2008. Density functional study of protonated formylmetallocenes. Organometallics. 27(3), 394–401.","ama":"Šarić A, Vrček V, Bühl M. Density functional study of protonated formylmetallocenes. <i>Organometallics</i>. 2008;27(3):394-401. doi:<a href=\"https://doi.org/10.1021/om700916f\">10.1021/om700916f</a>","mla":"Šarić, Anđela, et al. “Density Functional Study of Protonated Formylmetallocenes.” <i>Organometallics</i>, vol. 27, no. 3, American Chemical Society, 2008, pp. 394–401, doi:<a href=\"https://doi.org/10.1021/om700916f\">10.1021/om700916f</a>."},"author":[{"id":"bf63d406-f056-11eb-b41d-f263a6566d8b","full_name":"Šarić, Anđela","last_name":"Šarić","orcid":"0000-0002-7854-2139","first_name":"Anđela"},{"first_name":"Valerije","full_name":"Vrček, Valerije","last_name":"Vrček"},{"full_name":"Bühl, Michael","last_name":"Bühl","first_name":"Michael"}],"keyword":["Inorganic Chemistry","Organic Chemistry","Physical and Theoretical Chemistry"],"abstract":[{"lang":"eng","text":"Protonated formylmetallocenes [M(C5H5)(C5H4-CHOH)]+ (M = Fe, Ru) and their isomers have been studied at the BP86 and B3LYP levels of density functional theory. Oxygen-protonated isomers are the most stable forms in each case, with a plethora of ring- or metal-protonated species at least ca. 14 and 10 kcal/mol higher in energy for M = Fe and Ru, respectively. The computed rotational barriers around the C−C bond connecting the cyclopentadienyl and protonated formyl moieties, ca. 18 kcal/mol, are indicative of substantial conjugation between these moieties. Some of the ring- and iron-protonated species are models for possible intermediates in Friedel–Crafts acylation of ferrocene, and the computations provide further evidence that exo attack is clearly favored over endo attack of the electrophile in this reaction. The structures of the most stable mono- and diprotonated formylferrocenes are corroborated by the good agreement between GIAO-B3LYP-computed and experimental NMR chemical shifts."}],"volume":27,"date_updated":"2021-11-30T08:04:44Z","article_processing_charge":"No","acknowledgement":"M.B. wishes to thank Prof. W. Thiel and the Max-Planck-Institut für Kohlenforschung for continuing support. A Humboldt fellowship for V.V. is gratefully acknowledged. Computations were performed on Compaq XP1000 and ES40 workstations as well as on an Intel Xeon PC cluster at the MPI Mülheim. A.S. thanks the Computing Center of the University of Zagreb SRCE for allocating computer time on the Isabella cluster.","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","quality_controlled":"1","oa_version":"None","_id":"10392","publication_identifier":{"eissn":["1520-6041"],"issn":["0276-7333"]},"extern":"1","year":"2008","doi":"10.1021/om700916f","title":"Density functional study of protonated formylmetallocenes","main_file_link":[{"url":"https://pubs.acs.org/doi/10.1021/om700916f"}]},{"issue":"1","publication":"Proceedings of the VLDB Endowment","volume":1,"date_updated":"2023-02-17T13:55:24Z","page":"176-187","article_processing_charge":"No","_id":"11878","publication_identifier":{"issn":["2150-8097"]},"extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","oa_version":"None","publication_status":"published","day":"01","citation":{"ista":"Baykan E, Henzinger MH, Weber I. 2008. Web page language identification based on URLs. Proceedings of the VLDB Endowment. 1(1), 176–187.","short":"E. Baykan, M.H. Henzinger, I. Weber, Proceedings of the VLDB Endowment 1 (2008) 176–187.","ama":"Baykan E, Henzinger MH, Weber I. Web page language identification based on URLs. <i>Proceedings of the VLDB Endowment</i>. 2008;1(1):176-187. doi:<a href=\"https://doi.org/10.14778/1453856.1453880\">10.14778/1453856.1453880</a>","mla":"Baykan, Eda, et al. “Web Page Language Identification Based on URLs.” <i>Proceedings of the VLDB Endowment</i>, vol. 1, no. 1, Association for Computing Machinery, 2008, pp. 176–87, doi:<a href=\"https://doi.org/10.14778/1453856.1453880\">10.14778/1453856.1453880</a>.","chicago":"Baykan, Eda, Monika H Henzinger, and Ingmar Weber. “Web Page Language Identification Based on URLs.” <i>Proceedings of the VLDB Endowment</i>. Association for Computing Machinery, 2008. <a href=\"https://doi.org/10.14778/1453856.1453880\">https://doi.org/10.14778/1453856.1453880</a>.","ieee":"E. Baykan, M. H. Henzinger, and I. Weber, “Web page language identification based on URLs,” <i>Proceedings of the VLDB Endowment</i>, vol. 1, no. 1. Association for Computing Machinery, pp. 176–187, 2008.","apa":"Baykan, E., Henzinger, M. H., &#38; Weber, I. (2008). Web page language identification based on URLs. <i>Proceedings of the VLDB Endowment</i>. Association for Computing Machinery. <a href=\"https://doi.org/10.14778/1453856.1453880\">https://doi.org/10.14778/1453856.1453880</a>"},"type":"journal_article","intvolume":"         1","abstract":[{"lang":"eng","text":"Given only the URL of a web page, can we identify its language? This is the question that we examine in this paper.\r\nSuch a language classifier is, for example, useful for crawlers of web search engines, which frequently try to satisfy certain language quotas. To determine the language of uncrawled web pages, they have to download the page, which might be wasteful, if the page is not in the desired language. With URL-based language classifiers these redundant downloads can be avoided.\r\n\r\nWe apply a variety of machine learning algorithms to the language identification task and evaluate their performance in extensive experiments for five languages: English, French, German, Spanish and Italian. Our best methods achieve an F-measure, averaged over all languages, of around .90 for both a random sample of 1,260 web page from a large web crawl and for 25k pages from the ODP directory. For 5k pages of web search engine results we even achieve an F-measure of .96. The achieved recall for these collections is .93, .88 and .95 respectively. Two independent human evaluators performed considerably worse on the task, with an F-measure of .75 and a typical recall of a mere .67. Using only country-code top-level domains, such as .de or .fr yields a good precision, but a typical recall of below .60 and an F-measure of around .68."}],"status":"public","author":[{"first_name":"Eda","full_name":"Baykan, Eda","last_name":"Baykan"},{"first_name":"Monika H","last_name":"Henzinger","full_name":"Henzinger, Monika H","orcid":"0000-0002-5008-6530","id":"540c9bbd-f2de-11ec-812d-d04a5be85630"},{"full_name":"Weber, Ingmar","last_name":"Weber","first_name":"Ingmar"}],"date_created":"2022-08-16T13:10:11Z","month":"08","year":"2008","doi":"10.14778/1453856.1453880","article_type":"original","date_published":"2008-08-01T00:00:00Z","publisher":"Association for Computing Machinery","title":"Web page language identification based on URLs","scopus_import":"1","language":[{"iso":"eng"}]},{"publication_status":"published","citation":{"short":"F. Pellicciotti, J. Helbing, A. Rivera, V. Favier, J. Corripio, J. Araos, J.-E. Sicart, M. Carenzo, Hydrological Processes 22 (2008) 3980–3997.","ista":"Pellicciotti F, Helbing J, Rivera A, Favier V, Corripio J, Araos J, Sicart J-E, Carenzo M. 2008. A study of the energy balance and melt regime on Juncal Norte Glacier, semi-arid Andes of central Chile, using melt models of different complexity. Hydrological Processes. 22(19), 3980–3997.","ama":"Pellicciotti F, Helbing J, Rivera A, et al. A study of the energy balance and melt regime on Juncal Norte Glacier, semi-arid Andes of central Chile, using melt models of different complexity. <i>Hydrological Processes</i>. 2008;22(19):3980-3997. doi:<a href=\"https://doi.org/10.1002/hyp.7085\">10.1002/hyp.7085</a>","mla":"Pellicciotti, Francesca, et al. “A Study of the Energy Balance and Melt Regime on Juncal Norte Glacier, Semi-Arid Andes of Central Chile, Using Melt Models of Different Complexity.” <i>Hydrological Processes</i>, vol. 22, no. 19, Wiley, 2008, pp. 3980–97, doi:<a href=\"https://doi.org/10.1002/hyp.7085\">10.1002/hyp.7085</a>.","chicago":"Pellicciotti, Francesca, Jakob Helbing, Andrés Rivera, Vincent Favier, Javier Corripio, José Araos, Jean-Emmanuel Sicart, and Marco Carenzo. “A Study of the Energy Balance and Melt Regime on Juncal Norte Glacier, Semi-Arid Andes of Central Chile, Using Melt Models of Different Complexity.” <i>Hydrological Processes</i>. Wiley, 2008. <a href=\"https://doi.org/10.1002/hyp.7085\">https://doi.org/10.1002/hyp.7085</a>.","apa":"Pellicciotti, F., Helbing, J., Rivera, A., Favier, V., Corripio, J., Araos, J., … Carenzo, M. (2008). A study of the energy balance and melt regime on Juncal Norte Glacier, semi-arid Andes of central Chile, using melt models of different complexity. <i>Hydrological Processes</i>. Wiley. <a href=\"https://doi.org/10.1002/hyp.7085\">https://doi.org/10.1002/hyp.7085</a>","ieee":"F. Pellicciotti <i>et al.</i>, “A study of the energy balance and melt regime on Juncal Norte Glacier, semi-arid Andes of central Chile, using melt models of different complexity,” <i>Hydrological Processes</i>, vol. 22, no. 19. Wiley, pp. 3980–3997, 2008."},"abstract":[{"lang":"eng","text":"We use meteorological data from two automatic weather stations (AWS) on Juncal Norte Glacier, central Chile, to investigate the glacier–climate interaction and to test ablation models of different complexity. The semi-arid Central Andes are characterized by dry summers, with precipitation close to zero, low relative humidity and intense solar radiation. We show that katabatic forcing is dominant both on the glacier tongue and in the fore field, and that low humidity and absence of clouds cause strong radiative cooling of the glacier surface. Surface albedo is basically constant for snow and ice, because of the scarcity of solid precipitation. The energy balance of the glacier is simulated for a 2-month period in austral summer using two models of different complexity, which differ in the inclusion of the heat conduction flux into the snowpack and in the parameterization of the incoming longwave radiation. Net shortwave radiation is the dominant component of the energy balance. The sensible heat flux is always positive, while both the net longwave radiation and latent heat flux are negative. Neglecting the subsurface heat flux and corresponding variations in surface temperature leads to an overestimation of ablation of 2% over a total of 3695 mm water equivalent (w.e.) at the end of the season. Correct modelling of incoming longwave radiation is crucial, and we suggest that parameterizations based on vapour pressure and air temperature should be used rather than on computed cloud amount. We also used an enhanced temperature-index model incorporating the shortwave radiation flux, which has two empirical parameters. We apply it both with values of parameters obtained for Alpine glaciers and recalibrated on Juncal Norte. The model recalibrated against the correct energy balance simulations performs very well. The model parameters respond to the meteorological conditions typical of this climatic setting."}],"keyword":["Water Science and Technology"],"author":[{"last_name":"Pellicciotti","full_name":"Pellicciotti, Francesca","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"},{"last_name":"Helbing","full_name":"Helbing, Jakob","first_name":"Jakob"},{"first_name":"Andrés","last_name":"Rivera","full_name":"Rivera, Andrés"},{"first_name":"Vincent","last_name":"Favier","full_name":"Favier, Vincent"},{"first_name":"Javier","last_name":"Corripio","full_name":"Corripio, Javier"},{"first_name":"José","last_name":"Araos","full_name":"Araos, José"},{"first_name":"Jean-Emmanuel","last_name":"Sicart","full_name":"Sicart, Jean-Emmanuel"},{"full_name":"Carenzo, Marco","last_name":"Carenzo","first_name":"Marco"}],"date_updated":"2023-02-20T08:48:33Z","volume":22,"article_processing_charge":"No","_id":"12656","extern":"1","publication_identifier":{"issn":["0885-6087"],"eissn":["1099-1085"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","oa_version":"None","doi":"10.1002/hyp.7085","year":"2008","title":"A study of the energy balance and melt regime on Juncal Norte Glacier, semi-arid Andes of central Chile, using melt models of different complexity","day":"15","type":"journal_article","intvolume":"        22","status":"public","issue":"19","publication":"Hydrological Processes","page":"3980-3997","month":"09","date_published":"2008-09-15T00:00:00Z","article_type":"original","publisher":"Wiley","scopus_import":"1","language":[{"iso":"eng"}],"date_created":"2023-02-20T08:18:45Z"},{"doi":"10.1016/j.cub.2008.02.022","year":"2008","month":"03","date_published":"2008-03-11T00:00:00Z","publisher":"Cell Press","title":"Response properties of motion sensitive visual interneurons in the Lobula plate of Drosophila melanogaster","date_created":"2018-12-11T11:51:13Z","publication_status":"published","citation":{"chicago":"Jösch, Maximilian A, Johannes Plett, Alexander Borst, and Dierk Reiff. “Response Properties of Motion Sensitive Visual Interneurons in the Lobula Plate of Drosophila Melanogaster.” <i>Current Biology</i>. Cell Press, 2008. <a href=\"https://doi.org/10.1016/j.cub.2008.02.022\">https://doi.org/10.1016/j.cub.2008.02.022</a>.","apa":"Jösch, M. A., Plett, J., Borst, A., &#38; Reiff, D. (2008). Response properties of motion sensitive visual interneurons in the Lobula plate of Drosophila melanogaster. <i>Current Biology</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cub.2008.02.022\">https://doi.org/10.1016/j.cub.2008.02.022</a>","ieee":"M. A. Jösch, J. Plett, A. Borst, and D. Reiff, “Response properties of motion sensitive visual interneurons in the Lobula plate of Drosophila melanogaster,” <i>Current Biology</i>, vol. 18, no. 5. Cell Press, pp. 368–374, 2008.","short":"M.A. Jösch, J. Plett, A. Borst, D. Reiff, Current Biology 18 (2008) 368–374.","ista":"Jösch MA, Plett J, Borst A, Reiff D. 2008. Response properties of motion sensitive visual interneurons in the Lobula plate of Drosophila melanogaster. Current Biology. 18(5), 368–374.","ama":"Jösch MA, Plett J, Borst A, Reiff D. Response properties of motion sensitive visual interneurons in the Lobula plate of Drosophila melanogaster. <i>Current Biology</i>. 2008;18(5):368-374. doi:<a href=\"https://doi.org/10.1016/j.cub.2008.02.022\">10.1016/j.cub.2008.02.022</a>","mla":"Jösch, Maximilian A., et al. “Response Properties of Motion Sensitive Visual Interneurons in the Lobula Plate of Drosophila Melanogaster.” <i>Current Biology</i>, vol. 18, no. 5, Cell Press, 2008, pp. 368–74, doi:<a href=\"https://doi.org/10.1016/j.cub.2008.02.022\">10.1016/j.cub.2008.02.022</a>."},"day":"11","type":"journal_article","abstract":[{"text":"The crystalline-like structure of the optic lobes of the fruit fly Drosophila melanogaster has made them a model system for the study of neuronal cell-fate determination, axonal path finding, and target selection. For functional studies, however, the small size of the constituting visual interneurons has so far presented a formidable barrier. We have overcome this problem by establishing in vivo whole-cell recordings [1] from genetically targeted visual interneurons of Drosophila. Here, we describe the response properties of six motion-sensitive large-field neurons in the lobula plate that form a network consisting of individually identifiable, directionally selective cells most sensitive to vertical image motion (VS cells [2, 3]). Individual VS cell responses to visual motion stimuli exhibit all the characteristics that are indicative of presynaptic input from elementary motion detectors of the correlation type [4, 5]. Different VS cells possess distinct receptive fields that are arranged sequentially along the eye's azimuth, corresponding to their characteristic cellular morphology and position within the retinotopically organized lobula plate. In addition, lateral connections between individual VS cells cause strongly overlapping receptive fields that are wider than expected from their dendritic input. Our results suggest that motion vision in different dipteran fly species is accomplished in similar circuitries and according to common algorithmic rules. The underlying neural mechanisms of population coding within the VS cell network and of elementary motion detection, respectively, can now be analyzed by the combination of electrophysiology and genetic intervention in Drosophila.","lang":"eng"}],"intvolume":"        18","status":"public","author":[{"first_name":"Maximilian A","orcid":"0000-0002-3937-1330","full_name":"Maximilian Jösch","last_name":"Jösch","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Plett","full_name":"Plett, Johannes","first_name":"Johannes"},{"first_name":"Alexander","last_name":"Borst","full_name":"Borst, Alexander"},{"first_name":"Dierk","last_name":"Reiff","full_name":"Reiff, Dierk F"}],"issue":"5","publication":"Current Biology","date_updated":"2021-01-12T06:49:42Z","publist_id":"5973","volume":18,"page":"368 - 374","_id":"1296","extern":1,"acknowledgement":"This work was supported by the Max-Planck-Society and by a Human Frontier Science Program (HFSP) grant to K. Ito, A.B., and B. Nelson.","quality_controlled":0},{"intvolume":"        19","abstract":[{"text":"With the introduction of single-molecule force spectroscopy (SMFS) it has become possible to directly access the interactions of various molecular systems. A bottleneck in conventional SMFS is collecting the large amount of data required for statistically meaningful analysis. Currently, atomic force microscopy (AFM)-based SMFS requires the user to tediously 'fish' for single molecules. In addition, most experimental and environmental conditions must be manually adjusted. Here, we developed a fully automated single-molecule force spectroscope. The instrument is able to perform SMFS while monitoring and regulating experimental conditions such as buffer composition and temperature. Cantilever alignment and calibration can also be automatically performed during experiments. This, combined with in-line data analysis, enables the instrument, once set up, to perform complete SMFS experiments autonomously.","lang":"eng"}],"author":[{"first_name":"Jens","last_name":"Struckmeier","full_name":"Struckmeier, Jens"},{"first_name":"Reiner","full_name":"Wahl, Reiner","last_name":"Wahl"},{"full_name":"Leuschner, Mirko","last_name":"Leuschner","first_name":"Mirko"},{"first_name":"Joao","full_name":"Nunes, Joao","last_name":"Nunes"},{"first_name":"Harald L","full_name":"Harald Janovjak","last_name":"Janovjak","orcid":"0000-0002-8023-9315","id":"33BA6C30-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Geisler, Ulrich","last_name":"Geisler","first_name":"Ulrich"},{"first_name":"Gerd","last_name":"Hofmann","full_name":"Hofmann, Gerd"},{"last_name":"Jähnke","full_name":"Jähnke, Torsten","first_name":"Torsten"},{"first_name":"Daniel","last_name":"Mueller","full_name":"Mueller, Daniel J"}],"status":"public","citation":{"ama":"Struckmeier J, Wahl R, Leuschner M, et al. Fully automated single-molecule force spectroscopy for screening applications. <i>Nanotechnology</i>. 2008;19(38). doi:<a href=\"https://doi.org/10.1088/0957-4484/19/38/384020\">10.1088/0957-4484/19/38/384020</a>","mla":"Struckmeier, Jens, et al. “Fully Automated Single-Molecule Force Spectroscopy for Screening Applications.” <i>Nanotechnology</i>, vol. 19, no. 38, IOP Publishing Ltd., 2008, doi:<a href=\"https://doi.org/10.1088/0957-4484/19/38/384020\">10.1088/0957-4484/19/38/384020</a>.","ista":"Struckmeier J, Wahl R, Leuschner M, Nunes J, Janovjak HL, Geisler U, Hofmann G, Jähnke T, Mueller D. 2008. Fully automated single-molecule force spectroscopy for screening applications. Nanotechnology. 19(38).","short":"J. Struckmeier, R. Wahl, M. Leuschner, J. Nunes, H.L. Janovjak, U. Geisler, G. Hofmann, T. Jähnke, D. Mueller, Nanotechnology 19 (2008).","apa":"Struckmeier, J., Wahl, R., Leuschner, M., Nunes, J., Janovjak, H. L., Geisler, U., … Mueller, D. (2008). Fully automated single-molecule force spectroscopy for screening applications. <i>Nanotechnology</i>. IOP Publishing Ltd. <a href=\"https://doi.org/10.1088/0957-4484/19/38/384020\">https://doi.org/10.1088/0957-4484/19/38/384020</a>","ieee":"J. Struckmeier <i>et al.</i>, “Fully automated single-molecule force spectroscopy for screening applications,” <i>Nanotechnology</i>, vol. 19, no. 38. IOP Publishing Ltd., 2008.","chicago":"Struckmeier, Jens, Reiner Wahl, Mirko Leuschner, Joao Nunes, Harald L Janovjak, Ulrich Geisler, Gerd Hofmann, Torsten Jähnke, and Daniel Mueller. “Fully Automated Single-Molecule Force Spectroscopy for Screening Applications.” <i>Nanotechnology</i>. IOP Publishing Ltd., 2008. <a href=\"https://doi.org/10.1088/0957-4484/19/38/384020\">https://doi.org/10.1088/0957-4484/19/38/384020</a>."},"day":"12","publication_status":"published","type":"journal_article","extern":1,"_id":"3409","quality_controlled":0,"publication":"Nanotechnology","issue":"38","volume":19,"date_updated":"2021-01-12T07:43:17Z","publist_id":"2993","title":"Fully automated single-molecule force spectroscopy for screening applications","publisher":"IOP Publishing Ltd.","doi":"10.1088/0957-4484/19/38/384020","year":"2008","month":"08","date_published":"2008-08-12T00:00:00Z","date_created":"2018-12-11T12:03:11Z"},{"_id":"3410","extern":1,"quality_controlled":0,"issue":"7","publication":"ChemPhysChem","volume":9,"publist_id":"2992","date_updated":"2019-04-26T07:22:27Z","page":"954 - 966","intvolume":"         9","abstract":[{"lang":"eng","text":"Membrane proteins are involved in essential biological processes such as energy conversion, signal transduction, solute transport and secretion. All biological processes, also those involving membrane proteins, are steered by molecular interactions. Molecular interactions guide the folding and stability of membrane proteins, determine their assembly, switch their functional states or mediate signal transduction. The sequential steps of molecular interactions driving these processes can be described by dynamic energy landscapes. The conceptual energy landscape allows to follow the complex reaction pathways of membrane proteins while its modifications describe why and how pathways are changed. Single-molecule force spectroscopy (SMFS) detects, quantifies and locates interactions within and between membrane proteins. SMFS helps to determine how these interactions change with temperature, point mutations, oligomerization and the functional states of membrane proteins. Applied in different modes, SMFS explores the co-existence and population of reaction pathways in the energy landscape of the protein and thus reveals detailed insights into local mechanisms, determining its structural and functional relationships. Here we review how SMFS extracts the defining parameters of an energy landscape such as the barrier position, reaction kinetics and roughness with high precision."}],"status":"public","author":[{"full_name":"Harald Janovjak","last_name":"Janovjak","orcid":"0000-0002-8023-9315","first_name":"Harald L","id":"33BA6C30-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Sapra, Tanuj K","last_name":"Sapra","first_name":"Tanuj"},{"first_name":"Alexej","last_name":"Kedrov","full_name":"Kedrov, Alexej"},{"last_name":"Mueller","full_name":"Mueller, Daniel J","first_name":"Daniel"}],"publication_status":"published","citation":{"short":"H.L. Janovjak, T. Sapra, A. Kedrov, D. Mueller, ChemPhysChem 9 (2008) 954–966.","ista":"Janovjak HL, Sapra T, Kedrov A, Mueller D. 2008. From valleys to ridges: Exploring the energy landscape of single membrane proteins. ChemPhysChem. 9(7), 954–966.","mla":"Janovjak, Harald L., et al. “From Valleys to Ridges: Exploring the Energy Landscape of Single Membrane Proteins.” <i>ChemPhysChem</i>, vol. 9, no. 7, Wiley-Blackwell, 2008, pp. 954–66, doi:<a href=\"https://doi.org/10.1002/cphc.200700662\">10.1002/cphc.200700662</a>.","ama":"Janovjak HL, Sapra T, Kedrov A, Mueller D. From valleys to ridges: Exploring the energy landscape of single membrane proteins. <i>ChemPhysChem</i>. 2008;9(7):954-966. doi:<a href=\"https://doi.org/10.1002/cphc.200700662\">10.1002/cphc.200700662</a>","chicago":"Janovjak, Harald L, Tanuj Sapra, Alexej Kedrov, and Daniel Mueller. “From Valleys to Ridges: Exploring the Energy Landscape of Single Membrane Proteins.” <i>ChemPhysChem</i>. Wiley-Blackwell, 2008. <a href=\"https://doi.org/10.1002/cphc.200700662\">https://doi.org/10.1002/cphc.200700662</a>.","ieee":"H. L. Janovjak, T. Sapra, A. Kedrov, and D. Mueller, “From valleys to ridges: Exploring the energy landscape of single membrane proteins,” <i>ChemPhysChem</i>, vol. 9, no. 7. Wiley-Blackwell, pp. 954–966, 2008.","apa":"Janovjak, H. L., Sapra, T., Kedrov, A., &#38; Mueller, D. (2008). From valleys to ridges: Exploring the energy landscape of single membrane proteins. <i>ChemPhysChem</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1002/cphc.200700662\">https://doi.org/10.1002/cphc.200700662</a>"},"day":"02","type":"review","date_created":"2018-12-11T12:03:11Z","publisher":"Wiley-Blackwell","title":"From valleys to ridges: Exploring the energy landscape of single membrane proteins","year":"2008","month":"05","doi":"10.1002/cphc.200700662","date_published":"2008-05-02T00:00:00Z"},{"publication_status":"published","citation":{"apa":"Bollback, J. P., York, T., &#38; Nielsen, R. (2008). Estimation of 2Nes From Temporal Allele Frequency Data. <i>Genetics</i>. Genetics Society of America. <a href=\"https://doi.org/10.1534/genetics.107.085019\">https://doi.org/10.1534/genetics.107.085019</a>","ieee":"J. P. Bollback, T. York, and R. Nielsen, “Estimation of 2Nes From Temporal Allele Frequency Data,” <i>Genetics</i>, vol. 179, no. 1. Genetics Society of America, pp. 497–502, 2008.","chicago":"Bollback, Jonathan P, Thomas York, and Rasmus Nielsen. “Estimation of 2Nes From Temporal Allele Frequency Data.” <i>Genetics</i>. Genetics Society of America, 2008. <a href=\"https://doi.org/10.1534/genetics.107.085019\">https://doi.org/10.1534/genetics.107.085019</a>.","mla":"Bollback, Jonathan P., et al. “Estimation of 2Nes From Temporal Allele Frequency Data.” <i>Genetics</i>, vol. 179, no. 1, Genetics Society of America, 2008, pp. 497–502, doi:<a href=\"https://doi.org/10.1534/genetics.107.085019\">10.1534/genetics.107.085019</a>.","ama":"Bollback JP, York T, Nielsen R. Estimation of 2Nes From Temporal Allele Frequency Data. <i>Genetics</i>. 2008;179(1):497-502. doi:<a href=\"https://doi.org/10.1534/genetics.107.085019\">10.1534/genetics.107.085019</a>","short":"J.P. Bollback, T. York, R. Nielsen, Genetics 179 (2008) 497–502.","ista":"Bollback JP, York T, Nielsen R. 2008. Estimation of 2Nes From Temporal Allele Frequency Data. Genetics. 179(1), 497–502."},"day":"01","type":"journal_article","intvolume":"       179","abstract":[{"text":"We develop a new method for estimating effective population sizes, Ne, and selection coefficients, s, from time-series data of allele frequencies sampled from a single diallelic locus. The method is based on calculating transition probabilities, using a numerical solution of the diffusion process, and assuming independent binomial sampling from this diffusion process at each time point. We apply the method in two example applications. First, we estimate selection coefficients acting on the CCR5-Δ32 mutation on the basis of published samples of contemporary and ancient human DNA. We show that the data are compatible with the assumption of s = 0, although moderate amounts of selection acting on this mutation cannot be excluded. In our second example, we estimate the selection coefficient acting on a mutation segregating in an experimental phage population. We show that the selection coefficient acting on this mutation is ~0.43.","lang":"eng"}],"status":"public","author":[{"id":"2C6FA9CC-F248-11E8-B48F-1D18A9856A87","first_name":"Jonathan P","full_name":"Jonathan Bollback","last_name":"Bollback","orcid":"0000-0002-4624-4612"},{"first_name":"Thomas","last_name":"York","full_name":"York, Thomas L"},{"last_name":"Nielsen","full_name":"Nielsen, Rasmus","first_name":"Rasmus"}],"issue":"1","publication":"Genetics","volume":179,"publist_id":"2965","oa":1,"date_updated":"2021-01-12T07:43:27Z","page":"497 - 502","_id":"3435","extern":1,"quality_controlled":0,"year":"2008","doi":"10.1534/genetics.107.085019","month":"05","date_published":"2008-05-01T00:00:00Z","publisher":"Genetics Society of America","title":"Estimation of 2Nes From Temporal Allele Frequency Data","main_file_link":[{"open_access":"1","url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2390626"}],"date_created":"2018-12-11T12:03:19Z"},{"date_updated":"2021-01-12T07:43:53Z","publist_id":"2886","extern":1,"_id":"3501","quality_controlled":0,"acknowledgement":"This research has been partially supported by the CITRIS: Center for Information Technology Research in the Interest of Society.","day":"10","citation":{"ista":"Adler BT, Chatterjee K, De Alfaro L, Faella M, Pye I, Raman V. 2008. Assigning trust to Wikipedia content. WikiSym: International Symposium on Wikis.","short":"B.T. Adler, K. Chatterjee, L. De Alfaro, M. Faella, I. Pye, V. Raman, in:, ACM, 2008.","ama":"Adler BT, Chatterjee K, De Alfaro L, Faella M, Pye I, Raman V. Assigning trust to Wikipedia content. In: ACM; 2008. doi:<a href=\"https://doi.org/10.1145/1822258.1822293\">10.1145/1822258.1822293</a>","mla":"Adler, B. Thomas, et al. <i>Assigning Trust to Wikipedia Content</i>. ACM, 2008, doi:<a href=\"https://doi.org/10.1145/1822258.1822293\">10.1145/1822258.1822293</a>.","chicago":"Adler, B Thomas, Krishnendu Chatterjee, Luca De Alfaro, Marco Faella, Ian Pye, and Vishwanath Raman. “Assigning Trust to Wikipedia Content.” ACM, 2008. <a href=\"https://doi.org/10.1145/1822258.1822293\">https://doi.org/10.1145/1822258.1822293</a>.","apa":"Adler, B. T., Chatterjee, K., De Alfaro, L., Faella, M., Pye, I., &#38; Raman, V. (2008). Assigning trust to Wikipedia content. Presented at the WikiSym: International Symposium on Wikis, ACM. <a href=\"https://doi.org/10.1145/1822258.1822293\">https://doi.org/10.1145/1822258.1822293</a>","ieee":"B. T. Adler, K. Chatterjee, L. De Alfaro, M. Faella, I. Pye, and V. Raman, “Assigning trust to Wikipedia content,” presented at the WikiSym: International Symposium on Wikis, 2008."},"publication_status":"published","type":"conference","abstract":[{"text":"The Wikipedia is a collaborative encyclopedia: anyone can contribute to its articles simply by clicking on an &quot;edit&quot; button. The open nature of the Wikipedia has been key to its success, but has also created a challenge: how can readers develop an informed opinion on its reliability? We propose a system that computes quantitative values of trust for the text in Wikipedia articles; these trust values provide an indication of text reliability.\n\nThe system uses as input the revision history of each article, as well as information about the reputation of the contributing authors, as provided by a reputation system. The trust of a word in an article is computed on the basis of the reputation of the original author of the word, as well as the reputation of all authors who edited text near the word. The algorithm computes word trust values that vary smoothly across the text; the trust values can be visualized using varying text-background colors. The algorithm ensures that all changes to an article's text are reflected in the trust values, preventing surreptitious content changes.\n\nWe have implemented the proposed system, and we have used it to compute and display the trust of the text of thousands of articles of the English Wikipedia. To validate our trust-computation algorithms, we show that text labeled as low-trust has a significantly higher probability of being edited in the future than text labeled as high-trust.","lang":"eng"}],"status":"public","author":[{"first_name":"B Thomas","full_name":"Adler, B Thomas","last_name":"Adler"},{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee","full_name":"Krishnendu Chatterjee","orcid":"0000-0002-4561-241X","first_name":"Krishnendu"},{"last_name":"De Alfaro","full_name":"de Alfaro, Luca","first_name":"Luca"},{"first_name":"Marco","last_name":"Faella","full_name":"Faella, Marco"},{"full_name":"Pye, Ian","last_name":"Pye","first_name":"Ian"},{"full_name":"Raman, Vishwanath","last_name":"Raman","first_name":"Vishwanath"}],"conference":{"name":"WikiSym: International Symposium on Wikis"},"date_created":"2018-12-11T12:03:40Z","year":"2008","doi":"10.1145/1822258.1822293","month":"09","date_published":"2008-09-10T00:00:00Z","title":"Assigning trust to Wikipedia content","publisher":"ACM"},{"conference":{"name":"AISec: Artificial Intelligence and Security"},"date_created":"2018-12-11T12:03:40Z","month":"10","doi":"10.1145/1456377.1456387 ","year":"2008","date_published":"2008-10-31T00:00:00Z","publisher":"ACM","title":"Robust content-driven reputation","publist_id":"2885","date_updated":"2021-01-12T07:43:54Z","page":"33 - 42","_id":"3502","extern":1,"acknowledgement":"This research has been partially supported by the CITRIS: Center for Information Technology Research in the Interest of Society.","quality_controlled":0,"publication_status":"published","citation":{"ama":"Chatterjee K, De Alfaro L, Pye I. Robust content-driven reputation. In: ACM; 2008:33-42. doi:<a href=\"https://doi.org/10.1145/1456377.1456387 \">10.1145/1456377.1456387 </a>","mla":"Chatterjee, Krishnendu, et al. <i>Robust Content-Driven Reputation</i>. ACM, 2008, pp. 33–42, doi:<a href=\"https://doi.org/10.1145/1456377.1456387 \">10.1145/1456377.1456387 </a>.","short":"K. Chatterjee, L. De Alfaro, I. Pye, in:, ACM, 2008, pp. 33–42.","ista":"Chatterjee K, De Alfaro L, Pye I. 2008. Robust content-driven reputation. AISec: Artificial Intelligence and Security, 33–42.","ieee":"K. Chatterjee, L. De Alfaro, and I. Pye, “Robust content-driven reputation,” presented at the AISec: Artificial Intelligence and Security, 2008, pp. 33–42.","apa":"Chatterjee, K., De Alfaro, L., &#38; Pye, I. (2008). Robust content-driven reputation (pp. 33–42). Presented at the AISec: Artificial Intelligence and Security, ACM. <a href=\"https://doi.org/10.1145/1456377.1456387 \">https://doi.org/10.1145/1456377.1456387 </a>","chicago":"Chatterjee, Krishnendu, Luca De Alfaro, and Ian Pye. “Robust Content-Driven Reputation,” 33–42. ACM, 2008. <a href=\"https://doi.org/10.1145/1456377.1456387 \">https://doi.org/10.1145/1456377.1456387 </a>."},"day":"31","type":"conference","abstract":[{"lang":"eng","text":"In content-driven reputation systems for collaborative content, users gain or lose reputation according to how their contributions fare: authors of long-lived contributions gain reputation, while authors of reverted contributions lose reputation. Existing content-driven systems are prone to Sybil attacks, in which multiple identities, controlled by the same person, perform coordinated actions to increase their reputation. We show that content-driven reputation systems can be made resistant to such attacks by taking advantage of thefact that the reputation increments and decrements depend on content modifications, which are visible to all. We present an algorithm for content-driven reputation that prevents a set of identities from increasing their maximum reputation without doing any useful work. Here, work is considered useful if it causes content to evolve in a direction that is consistent with the actions of high-reputation users. We argue that the content modifications that require no effort, such as the insertion or deletion of arbitrary text, are invariably non-useful. We prove a truthfullness result for the resulting system, stating that users who wish to perform a contribution do not gain by employing complex contribution schemes, compared to simply performing the contribution at once. In particular, splitting the contribution in multiple portions, or employing the coordinated actions of multiple identities, do not yield additional reputation. Taken together, these results indicate that content-driven systems can be made robust with respect to Sybil attacks. Copyright 2008 ACM."}],"status":"public","author":[{"last_name":"Chatterjee","full_name":"Krishnendu Chatterjee","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Luca","full_name":"de Alfaro, Luca","last_name":"De Alfaro"},{"first_name":"Ian","last_name":"Pye","full_name":"Pye, Ian"}]}]