[{"article_type":"original","oa_version":"Published Version","date_published":"2002-02-01T00:00:00Z","type":"journal_article","volume":33,"oa":1,"quality_controlled":"1","extern":"1","month":"02","publisher":"IWA Publishing","doi":"10.2166/nh.2002.0004","date_updated":"2023-02-20T08:30:15Z","publication":"Hydrology Research","article_processing_charge":"No","day":"01","publication_status":"published","date_created":"2023-02-20T08:19:02Z","page":"47-74","author":[{"last_name":"Burlando","full_name":"Burlando, Paolo","first_name":"Paolo"},{"last_name":"Pellicciotti","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca"},{"first_name":"Ulrich","full_name":"Strasser, Ulrich","last_name":"Strasser"}],"language":[{"iso":"eng"}],"year":"2002","intvolume":"        33","citation":{"ama":"Burlando P, Pellicciotti F, Strasser U. Modelling mountainous water systems between learning and speculating looking for challenges. <i>Hydrology Research</i>. 2002;33(1):47-74. doi:<a href=\"https://doi.org/10.2166/nh.2002.0004\">10.2166/nh.2002.0004</a>","mla":"Burlando, Paolo, et al. “Modelling Mountainous Water Systems between Learning and Speculating Looking for Challenges.” <i>Hydrology Research</i>, vol. 33, no. 1, IWA Publishing, 2002, pp. 47–74, doi:<a href=\"https://doi.org/10.2166/nh.2002.0004\">10.2166/nh.2002.0004</a>.","chicago":"Burlando, Paolo, Francesca Pellicciotti, and Ulrich Strasser. “Modelling Mountainous Water Systems between Learning and Speculating Looking for Challenges.” <i>Hydrology Research</i>. IWA Publishing, 2002. <a href=\"https://doi.org/10.2166/nh.2002.0004\">https://doi.org/10.2166/nh.2002.0004</a>.","ista":"Burlando P, Pellicciotti F, Strasser U. 2002. Modelling mountainous water systems between learning and speculating looking for challenges. Hydrology Research. 33(1), 47–74.","apa":"Burlando, P., Pellicciotti, F., &#38; Strasser, U. (2002). Modelling mountainous water systems between learning and speculating looking for challenges. <i>Hydrology Research</i>. IWA Publishing. <a href=\"https://doi.org/10.2166/nh.2002.0004\">https://doi.org/10.2166/nh.2002.0004</a>","short":"P. Burlando, F. Pellicciotti, U. Strasser, Hydrology Research 33 (2002) 47–74.","ieee":"P. Burlando, F. Pellicciotti, and U. Strasser, “Modelling mountainous water systems between learning and speculating looking for challenges,” <i>Hydrology Research</i>, vol. 33, no. 1. IWA Publishing, pp. 47–74, 2002."},"main_file_link":[{"url":"https://doi.org/10.2166/nh.2002.0004","open_access":"1"}],"status":"public","title":"Modelling mountainous water systems between learning and speculating looking for challenges","_id":"12659","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"For many years considerable efforts have been put into investigating and modelling hydrological processes of mountainous catchments. On the one hand, the complexity and intrinsically high variability of the involved processes as well as insufficient knowledge of the underlying physical mechanisms still induce large uncertainties in understanding observed phenomena and predicting the behaviour of the system. On the other hand, the demand for models that are able to simulate mountainous water resource systems is increasing because of the needs related to both water exploitation and water conservation, which clearly call for an integrated vision and modelling of these systems.\r\nAccordingly, this paper moves from a brief survey of the most significant achievements in mountain hydrology to discuss what could be future challenging issues related to the broader spectrum of questions, which hydrologic modelling of mountainous river systems may face in the next decades. Firstly, reference is made to existing methodologies for modelling alpine water systems, focussing on some specific aspects that provide a basis for the discussion of the weaknesses and perspectives of present simulation tools. The future is thus discussed, delineating some of the research challenges that may foster a comprehensive and integrated vision of water related issues in mountainous regions."}],"publication_identifier":{"eissn":["2224-7955"],"issn":["0029-1277"]},"issue":"1","scopus_import":"1"},{"issue":"2","publication_identifier":{"issn":["0022-2844"]},"scopus_import":"1","status":"public","intvolume":"        55","citation":{"apa":"Perelygin, A., Kondrashov, F., Rogozin, I., &#38; Brinton, M. (2002). Evolution of the mouse polyubiquitin C gene. <i>Journal of Molecular Evolution</i>. Springer. <a href=\"https://doi.org/10.1007/s00239-002-2318-0\">https://doi.org/10.1007/s00239-002-2318-0</a>","ista":"Perelygin A, Kondrashov F, Rogozin I, Brinton M. 2002. Evolution of the mouse polyubiquitin C gene. Journal of Molecular Evolution. 55(2), 202–210.","short":"A. Perelygin, F. Kondrashov, I. Rogozin, M. Brinton, Journal of Molecular Evolution 55 (2002) 202–210.","ieee":"A. Perelygin, F. Kondrashov, I. Rogozin, and M. Brinton, “Evolution of the mouse polyubiquitin C gene,” <i>Journal of Molecular Evolution</i>, vol. 55, no. 2. Springer, pp. 202–210, 2002.","mla":"Perelygin, Andrey, et al. “Evolution of the Mouse Polyubiquitin C Gene.” <i>Journal of Molecular Evolution</i>, vol. 55, no. 2, Springer, 2002, pp. 202–10, doi:<a href=\"https://doi.org/10.1007/s00239-002-2318-0\">10.1007/s00239-002-2318-0</a>.","ama":"Perelygin A, Kondrashov F, Rogozin I, Brinton M. Evolution of the mouse polyubiquitin C gene. <i>Journal of Molecular Evolution</i>. 2002;55(2):202-210. doi:<a href=\"https://doi.org/10.1007/s00239-002-2318-0\">10.1007/s00239-002-2318-0</a>","chicago":"Perelygin, Andrey, Fyodor Kondrashov, Igor Rogozin, and Margo Brinton. “Evolution of the Mouse Polyubiquitin C Gene.” <i>Journal of Molecular Evolution</i>. Springer, 2002. <a href=\"https://doi.org/10.1007/s00239-002-2318-0\">https://doi.org/10.1007/s00239-002-2318-0</a>."},"title":"Evolution of the mouse polyubiquitin C gene","_id":"859","user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","abstract":[{"text":"The polymeric ubiquitin (poly-u) genes are composed of tandem 228-bp repeats with no spacer sequences between individual monomer units. Ubiquitin is one of the most conserved proteins known to date, and the individual units within a number of poly-u genes are significantly more similar to each other than would be expected if each unit evolved independently. It has been proposed that the rather striking similarity among poly-u monomers in some lineages is caused by a series of homogenization events. Here we report the sequences of the polyubiquitin-C (Ubc) genes in two mouse strains. Analysis of these sequences, as well as those of the previously reported Chinese hamster and rat poly-u genes, supports the assertion that the homogenization of the ubiquitin-C gene in rodents is due to unequal crossing-over events. The sequence divergence of noncoding DNA was used to estimate the frequency of unequal crossing-over events (6.3 x 10-5 events per generation) in the Ubc gene, as well as to provide evidence of apparent selection in the poly-u gene.","lang":"eng"}],"acknowledgement":"We are thankful to J.A. Southerland and P.L. Jiang for technical assistance in DNA sequencing, as well as to Y.I. Pavlov for helpful discussions. This work was supported by public Health Service Research Grant AI45135 from the Institute of Allergy and Infectious Diseases, National Institutes of Health.","pmid":1,"page":"202 - 210","author":[{"last_name":"Perelygin","first_name":"Andrey","full_name":"Perelygin, Andrey"},{"first_name":"Fyodor","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","full_name":"Kondrashov, Fyodor","last_name":"Kondrashov","orcid":"0000-0001-8243-4694"},{"last_name":"Rogozin","full_name":"Rogozin, Igor","first_name":"Igor"},{"last_name":"Brinton","first_name":"Margo","full_name":"Brinton, Margo"}],"day":"01","publist_id":"6787","publication_status":"published","date_created":"2018-12-11T11:48:53Z","language":[{"iso":"eng"}],"year":"2002","date_published":"2002-01-01T00:00:00Z","type":"journal_article","volume":55,"article_type":"original","oa_version":"None","external_id":{"pmid":["12107596"]},"date_updated":"2023-07-26T12:01:34Z","publisher":"Springer","doi":"10.1007/s00239-002-2318-0","publication":"Journal of Molecular Evolution","article_processing_charge":"No","quality_controlled":"1","extern":"1","month":"01"},{"publication_identifier":{"issn":["1465-6906"]},"issue":"2","scopus_import":"1","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC65685/","open_access":"1"}],"citation":{"ista":"Kondrashov F, Rogozin I, Wolf Y, Koonin E. 2002. Selection in the evolution of gene duplications . Genome Biology. 3(2).","apa":"Kondrashov, F., Rogozin, I., Wolf, Y., &#38; Koonin, E. (2002). Selection in the evolution of gene duplications . <i>Genome Biology</i>. BioMed Central. <a href=\"https://doi.org/10.1186/gb-2002-3-2-research0008\">https://doi.org/10.1186/gb-2002-3-2-research0008</a>","ieee":"F. Kondrashov, I. Rogozin, Y. Wolf, and E. Koonin, “Selection in the evolution of gene duplications ,” <i>Genome Biology</i>, vol. 3, no. 2. BioMed Central, 2002.","short":"F. Kondrashov, I. Rogozin, Y. Wolf, E. Koonin, Genome Biology 3 (2002).","ama":"Kondrashov F, Rogozin I, Wolf Y, Koonin E. Selection in the evolution of gene duplications . <i>Genome Biology</i>. 2002;3(2). doi:<a href=\"https://doi.org/10.1186/gb-2002-3-2-research0008\">10.1186/gb-2002-3-2-research0008</a>","mla":"Kondrashov, Fyodor, et al. “Selection in the Evolution of Gene Duplications .” <i>Genome Biology</i>, vol. 3, no. 2, BioMed Central, 2002, doi:<a href=\"https://doi.org/10.1186/gb-2002-3-2-research0008\">10.1186/gb-2002-3-2-research0008</a>.","chicago":"Kondrashov, Fyodor, Igor Rogozin, Yuri Wolf, and Eugene Koonin. “Selection in the Evolution of Gene Duplications .” <i>Genome Biology</i>. BioMed Central, 2002. <a href=\"https://doi.org/10.1186/gb-2002-3-2-research0008\">https://doi.org/10.1186/gb-2002-3-2-research0008</a>."},"intvolume":"         3","status":"public","acknowledgement":"We are grateful to A.S. Kondrashov for numerous helpful suggestions, to I. King Jordan, M.A. Roytberg, J.L. Spouge and D.A. Kondrashov for useful discussions and to A.S. Kondrashov, I. King Jordan and D.J. Lipman for critical reading of the manuscript.","pmid":1,"_id":"871","title":"Selection in the evolution of gene duplications ","abstract":[{"text":"BACKGROUND: Gene duplications have a major role in the evolution of new biological functions. Theoretical studies often assume that a duplication per se is selectively neutral and that, following a duplication, one of the gene copies is freed from purifying (stabilizing) selection, which creates the potential for evolution of a new function. RESULTS: In search of systematic evidence of accelerated evolution after duplication, we used data from 26 bacterial, six archaeal, and seven eukaryotic genomes to compare the mode and strength of selection acting on recently duplicated genes (paralogs) and on similarly diverged, unduplicated orthologous genes in different species. We find that the ratio of nonsynonymous to synonymous substitutions (Kn/Ks) in most paralogous pairs is &lt;&lt;1 and that paralogs typically evolve at similar rates, without significant asymmetry, indicating that both paralogs produced by a duplication are subject to purifying selection. This selection is, however, substantially weaker than the purifying selection affecting unduplicated orthologs that have diverged to the same extent as the analyzed paralogs. Most of the recently duplicated genes appear to be involved in various forms of environmental response; in particular, many of them encode membrane and secreted proteins. CONCLUSIONS: The results of this analysis indicate that recently duplicated paralogs evolve faster than orthologs with the same level of divergence and similar functions, but apparently do not experience a phase of neutral evolution. We hypothesize that gene duplications that persist in an evolving lineage are beneficial from the time of their origin, due primarily to a protein dosage effect in response to variable environmental conditions; duplications are likely to give rise to new functions at a later phase of their evolution once a higher level of divergence is reached.","lang":"eng"}],"user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","publist_id":"6781","publication_status":"published","day":"01","date_created":"2018-12-11T11:48:57Z","author":[{"last_name":"Kondrashov","orcid":"0000-0001-8243-4694","full_name":"Kondrashov, Fyodor","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","first_name":"Fyodor"},{"first_name":"Igor","full_name":"Rogozin, Igor","last_name":"Rogozin"},{"last_name":"Wolf","first_name":"Yuri","full_name":"Wolf, Yuri"},{"full_name":"Koonin, Eugene","first_name":"Eugene","last_name":"Koonin"}],"year":"2002","language":[{"iso":"eng"}],"article_type":"original","oa_version":"Published Version","external_id":{"pmid":["11864370"]},"volume":3,"type":"journal_article","date_published":"2002-01-01T00:00:00Z","extern":"1","quality_controlled":"1","oa":1,"month":"01","publication":"Genome Biology","publisher":"BioMed Central","doi":"10.1186/gb-2002-3-2-research0008","date_updated":"2023-07-26T11:48:27Z","article_processing_charge":"No"},{"publication_identifier":{"issn":["0027-8424"]},"issue":"23","scopus_import":"1","citation":{"mla":"Kondrashov, Alexey, et al. “Dobzhansky-Muller Incompatibilities in Protein Evolution.” <i>PNAS</i>, vol. 99, no. 23, National Academy of Sciences, 2002, pp. 14878–83, doi:<a href=\"https://doi.org/10.1073/pnas.232565499\">10.1073/pnas.232565499</a>.","ama":"Kondrashov A, Sunyaev S, Kondrashov F. Dobzhansky-Muller incompatibilities in protein evolution. <i>PNAS</i>. 2002;99(23):14878-14883. doi:<a href=\"https://doi.org/10.1073/pnas.232565499\">10.1073/pnas.232565499</a>","chicago":"Kondrashov, Alexey, Shamil Sunyaev, and Fyodor Kondrashov. “Dobzhansky-Muller Incompatibilities in Protein Evolution.” <i>PNAS</i>. National Academy of Sciences, 2002. <a href=\"https://doi.org/10.1073/pnas.232565499\">https://doi.org/10.1073/pnas.232565499</a>.","apa":"Kondrashov, A., Sunyaev, S., &#38; Kondrashov, F. (2002). Dobzhansky-Muller incompatibilities in protein evolution. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.232565499\">https://doi.org/10.1073/pnas.232565499</a>","ista":"Kondrashov A, Sunyaev S, Kondrashov F. 2002. Dobzhansky-Muller incompatibilities in protein evolution. PNAS. 99(23), 14878–14883.","short":"A. Kondrashov, S. Sunyaev, F. Kondrashov, PNAS 99 (2002) 14878–14883.","ieee":"A. Kondrashov, S. Sunyaev, and F. Kondrashov, “Dobzhansky-Muller incompatibilities in protein evolution,” <i>PNAS</i>, vol. 99, no. 23. National Academy of Sciences, pp. 14878–14883, 2002."},"intvolume":"        99","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC137512/","open_access":"1"}],"status":"public","pmid":1,"title":"Dobzhansky-Muller incompatibilities in protein evolution","_id":"885","user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","abstract":[{"text":"We study fitness landscape in the space of protein sequences by relating sets of human pathogenic missense mutations in 32 proteins to amino acid substitutions that occurred in the course of evolution of these proteins. On average, ≈10% of deviations of a nonhuman protein from its human ortholog are compensated pathogenic deviations (CPDs), i.e., are caused by an amino acid substitution that, at this site, would be pathogenic to humans. Normal functioning of a CPD-containing protein must be caused by other, compensatory deviations of the nonhuman species from humans. Together, a CPD and the corresponding compensatory deviation form a Dobzhansky-Muller incompatibility that can be visualized as the corner on a fitness ridge. Thus, proteins evolve along fitness ridges which contain only ≈10 steps between sucessive corners. The fraction of CPDs among all deviations of a protein from its human ortholog does not increase with the evolutionary distance between the proteins, indicating that subtitutions that carry evolving proteins around these corners occur in rapid succession, driven by positive selection. Data on fitness of interspecies hybrids suggest that the compensatory change that makes a CPD fit usually occurs within the same protein. Data on protein structures and on cooccurrence of amino acids at different sites of multiple orthologous proteins often make it possible to provisionally identify the substitution that compensates a partiCUlar CPD.","lang":"eng"}],"day":"12","publist_id":"6763","publication_status":"published","date_created":"2018-12-11T11:49:01Z","page":"14878 - 14883","author":[{"last_name":"Kondrashov","first_name":"Alexey","full_name":"Kondrashov, Alexey"},{"last_name":"Sunyaev","full_name":"Sunyaev, Shamil","first_name":"Shamil"},{"last_name":"Kondrashov","orcid":"0000-0001-8243-4694","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","first_name":"Fyodor","full_name":"Kondrashov, Fyodor"}],"language":[{"iso":"eng"}],"year":"2002","external_id":{"pmid":["12403824"]},"oa_version":"Published Version","article_type":"original","type":"journal_article","date_published":"2002-11-12T00:00:00Z","volume":99,"quality_controlled":"1","oa":1,"extern":"1","month":"11","doi":"10.1073/pnas.232565499","date_updated":"2023-07-26T09:48:37Z","publisher":"National Academy of Sciences","publication":"PNAS","article_processing_charge":"No"},{"doi":"10.1038/ng940","publisher":"Nature Publishing Group","date_updated":"2023-07-26T09:45:30Z","publication":"Nature Genetics","article_processing_charge":"No","quality_controlled":"1","extern":"1","month":"08","date_published":"2002-08-01T00:00:00Z","type":"journal_article","volume":31,"oa_version":"None","external_id":{"pmid":["12134150"]},"article_type":"original","language":[{"iso":"eng"}],"year":"2002","page":"415 - 418","author":[{"first_name":"Cristian","full_name":"Castillo Davis, Cristian","last_name":"Castillo Davis"},{"last_name":"Mekhedov","first_name":"Sergei","full_name":"Mekhedov, Sergei"},{"last_name":"Hartl","full_name":"Hartl, Daniel","first_name":"Daniel"},{"full_name":"Koonin, Eugene","first_name":"Eugene","last_name":"Koonin"},{"first_name":"Fyodor","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","full_name":"Kondrashov, Fyodor","orcid":"0000-0001-8243-4694","last_name":"Kondrashov"}],"day":"01","publication_status":"published","publist_id":"6751","date_created":"2018-12-11T11:49:05Z","title":"Selection for short introns in highly expressed genes","_id":"897","user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","abstract":[{"lang":"eng","text":"Transcription is a slow and expensive process: in eukaryotes, approximately 20 nucleotides can be transcribed per second at the expense of at least two ATP molecules per nucleotide. Thus, at least for highly expressed genes, transcription of long introns, which are particularly common in mammals, is costly. Using data on the expression of genes that encode proteins in Caenorhabditis elegans and Homo sapiens, we show that introns in highly expressed genes are substantially shorter than those in genes that are expressed at low levels. This difference is greater in humans, such that introns are, on average, 14 times shorter in highly expressed genes than in genes with low expression, whereas in C. Elegans the difference in intron length is only twofold. In contrast, the density of introns in a gene does not strongly depend on the level of gene expression. Thus, natural selection appears to favor short introns in highly expressed genes to minimize the cost of transcription and other molecular processes, such as splicing.\r\n"}],"acknowledgement":"We are grateful to A. Kondrashov, I. Rogozin and A. Feldman for reading the manuscript and P. Bouman, J. Cherry, J. Blumensteil and T. Kim for discussion.","pmid":1,"status":"public","citation":{"apa":"Castillo Davis, C., Mekhedov, S., Hartl, D., Koonin, E., &#38; Kondrashov, F. (2002). Selection for short introns in highly expressed genes. <i>Nature Genetics</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/ng940\">https://doi.org/10.1038/ng940</a>","ista":"Castillo Davis C, Mekhedov S, Hartl D, Koonin E, Kondrashov F. 2002. Selection for short introns in highly expressed genes. Nature Genetics. 31(4), 415–418.","ieee":"C. Castillo Davis, S. Mekhedov, D. Hartl, E. Koonin, and F. Kondrashov, “Selection for short introns in highly expressed genes,” <i>Nature Genetics</i>, vol. 31, no. 4. Nature Publishing Group, pp. 415–418, 2002.","short":"C. Castillo Davis, S. Mekhedov, D. Hartl, E. Koonin, F. Kondrashov, Nature Genetics 31 (2002) 415–418.","mla":"Castillo Davis, Cristian, et al. “Selection for Short Introns in Highly Expressed Genes.” <i>Nature Genetics</i>, vol. 31, no. 4, Nature Publishing Group, 2002, pp. 415–18, doi:<a href=\"https://doi.org/10.1038/ng940\">10.1038/ng940</a>.","ama":"Castillo Davis C, Mekhedov S, Hartl D, Koonin E, Kondrashov F. Selection for short introns in highly expressed genes. <i>Nature Genetics</i>. 2002;31(4):415-418. doi:<a href=\"https://doi.org/10.1038/ng940\">10.1038/ng940</a>","chicago":"Castillo Davis, Cristian, Sergei Mekhedov, Daniel Hartl, Eugene Koonin, and Fyodor Kondrashov. “Selection for Short Introns in Highly Expressed Genes.” <i>Nature Genetics</i>. Nature Publishing Group, 2002. <a href=\"https://doi.org/10.1038/ng940\">https://doi.org/10.1038/ng940</a>."},"intvolume":"        31","scopus_import":"1","issue":"4"},{"month":"06","extern":"1","acknowledgement":"Financial support from NCSR “Demokritos” (Dimoerevna 598 project), Empeirikeion Foundation and General Secretariat for Research and Technology of Greece (EPET II, Greece–France and Greece–Czech Republic bilateral collaboration projects) is also greatly acknowledged. G. Katsaros thanks the Greek State Scholarships Foundation (IKY) for fellowship allowance","abstract":[{"text":"A new solvent-free composite polymer electrolyte consisting of high-molecular mass polyethylene oxide (PEO) filled with titanium oxide and containing LiI and I2 was developed. The introduction of the inorganic filler (TiO2 Degussa P25) into the polymer matrix produces dramatic morphological changes to the host polymer structure. Upon addition of the inorganic oxide, the surface roughness increases, with respect to the original polymer and in parallel, the fractal dimension decreases. Both the thermograms and the atomic force microscope (AFM) pictures confirm the amorphicity of the composite electrolyte. The polymer sub-units are held together in a parallel orientation, forming straight long chains of about 500 nm in width, along which TiO2 spherical particles of about 20-25 nm in diameter are distributed. The polymer chains separated by the titania particles are arranged in a three-dimensional, mechanically stable network, that creates free space and voids into which the iodide/triodide anions can easily migrate. All solid-state dye-sensitized solar cells fabricated using this composite electrolyte present high efficiencies (typical maximum incident photon to current efficiency (IPCE) as high as 40% at 520 nm and overall conversion efficiency (η) of 0.96% (Voc = 0.67 V, Jsc = 2.050 mA/cm2, FF = 39%) under direct solar irradiation. Further improvement of the photovoltaic performance is expected by optimization of the electrolyte parameters and of the cell assembly.","lang":"eng"}],"user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","article_processing_charge":"No","publication":"Journal of Photochemistry and Photobiology A: Chemistry","_id":"1737","title":"A solvent-free composite polymer/inorganic oxide electrolyte for high efficiency solid-state dye-sensitized solar cells","doi":"10.1016/S1010-6030(02)00027-8","publisher":"Elsevier","date_updated":"2023-07-26T08:56:55Z","oa_version":"None","citation":{"ista":"Katsaros G, Stergiopoulos T, Arabatzis I, Papadokostaki K, Falaras P. 2002. A solvent-free composite polymer/inorganic oxide electrolyte for high efficiency solid-state dye-sensitized solar cells. Journal of Photochemistry and Photobiology A: Chemistry. 149(1–3), 191–198.","apa":"Katsaros, G., Stergiopoulos, T., Arabatzis, I., Papadokostaki, K., &#38; Falaras, P. (2002). A solvent-free composite polymer/inorganic oxide electrolyte for high efficiency solid-state dye-sensitized solar cells. <i>Journal of Photochemistry and Photobiology A: Chemistry</i>. Elsevier. <a href=\"https://doi.org/10.1016/S1010-6030(02)00027-8\">https://doi.org/10.1016/S1010-6030(02)00027-8</a>","short":"G. Katsaros, T. Stergiopoulos, I. Arabatzis, K. Papadokostaki, P. Falaras, Journal of Photochemistry and Photobiology A: Chemistry 149 (2002) 191–198.","ieee":"G. Katsaros, T. Stergiopoulos, I. Arabatzis, K. Papadokostaki, and P. Falaras, “A solvent-free composite polymer/inorganic oxide electrolyte for high efficiency solid-state dye-sensitized solar cells,” <i>Journal of Photochemistry and Photobiology A: Chemistry</i>, vol. 149, no. 1–3. Elsevier, pp. 191–198, 2002.","ama":"Katsaros G, Stergiopoulos T, Arabatzis I, Papadokostaki K, Falaras P. A solvent-free composite polymer/inorganic oxide electrolyte for high efficiency solid-state dye-sensitized solar cells. <i>Journal of Photochemistry and Photobiology A: Chemistry</i>. 2002;149(1-3):191-198. doi:<a href=\"https://doi.org/10.1016/S1010-6030(02)00027-8\">10.1016/S1010-6030(02)00027-8</a>","mla":"Katsaros, Georgios, et al. “A Solvent-Free Composite Polymer/Inorganic Oxide Electrolyte for High Efficiency Solid-State Dye-Sensitized Solar Cells.” <i>Journal of Photochemistry and Photobiology A: Chemistry</i>, vol. 149, no. 1–3, Elsevier, 2002, pp. 191–98, doi:<a href=\"https://doi.org/10.1016/S1010-6030(02)00027-8\">10.1016/S1010-6030(02)00027-8</a>.","chicago":"Katsaros, Georgios, Thomas Stergiopoulos, Iannis Arabatzis, Kyriaki Papadokostaki, and Polycarpos Falaras. “A Solvent-Free Composite Polymer/Inorganic Oxide Electrolyte for High Efficiency Solid-State Dye-Sensitized Solar Cells.” <i>Journal of Photochemistry and Photobiology A: Chemistry</i>. Elsevier, 2002. <a href=\"https://doi.org/10.1016/S1010-6030(02)00027-8\">https://doi.org/10.1016/S1010-6030(02)00027-8</a>."},"intvolume":"       149","volume":149,"type":"journal_article","date_published":"2002-06-28T00:00:00Z","status":"public","language":[{"iso":"eng"}],"year":"2002","publication_identifier":{"issn":["1010-6030"]},"date_created":"2018-12-11T11:53:44Z","publist_id":"5387","publication_status":"published","day":"28","issue":"1-3","author":[{"first_name":"Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","full_name":"Katsaros, Georgios","last_name":"Katsaros"},{"first_name":"Thomas","full_name":"Stergiopoulos, Thomas","last_name":"Stergiopoulos"},{"last_name":"Arabatzis","full_name":"Arabatzis, Iannis","first_name":"Iannis"},{"last_name":"Papadokostaki","first_name":"Kyriaki","full_name":"Papadokostaki, Kyriaki"},{"full_name":"Falaras, Polycarpos","first_name":"Polycarpos","last_name":"Falaras"}],"page":"191 - 198"},{"citation":{"ista":"Falaras P, Chryssou K, Stergiopoulos T, Arabatzis I, Katsaros G, Catalano V, Kurtaran R, Hugot Le Goff A, Bernard M. 2002. Dye-sensitization of titanium dioxide thin films by Ru(II)-bpp-bpy complexes. Organic Photovoltaics vol. 4801, 125–135.","apa":"Falaras, P., Chryssou, K., Stergiopoulos, T., Arabatzis, I., Katsaros, G., Catalano, V., … Bernard, M. (2002). Dye-sensitization of titanium dioxide thin films by Ru(II)-bpp-bpy complexes (Vol. 4801, pp. 125–135). Presented at the Organic Photovoltaics, SPIE. <a href=\"https://doi.org/10.1117/12.452446\">https://doi.org/10.1117/12.452446</a>","short":"P. Falaras, K. Chryssou, T. Stergiopoulos, I. Arabatzis, G. Katsaros, V. Catalano, R. Kurtaran, A. Hugot Le Goff, M. Bernard, in:, SPIE, 2002, pp. 125–135.","ieee":"P. Falaras <i>et al.</i>, “Dye-sensitization of titanium dioxide thin films by Ru(II)-bpp-bpy complexes,” presented at the Organic Photovoltaics, 2002, vol. 4801, pp. 125–135.","ama":"Falaras P, Chryssou K, Stergiopoulos T, et al. Dye-sensitization of titanium dioxide thin films by Ru(II)-bpp-bpy complexes. In: Vol 4801. SPIE; 2002:125-135. doi:<a href=\"https://doi.org/10.1117/12.452446\">10.1117/12.452446</a>","mla":"Falaras, Polycarpos, et al. <i>Dye-Sensitization of Titanium Dioxide Thin Films by Ru(II)-Bpp-Bpy Complexes</i>. Vol. 4801, SPIE, 2002, pp. 125–35, doi:<a href=\"https://doi.org/10.1117/12.452446\">10.1117/12.452446</a>.","chicago":"Falaras, Polycarpos, Katerina Chryssou, Thomas Stergiopoulos, Ioannis Arabatzis, Georgios Katsaros, Vincent Catalano, Raif Kurtaran, Anne Hugot Le Goff, and Marie Bernard. “Dye-Sensitization of Titanium Dioxide Thin Films by Ru(II)-Bpp-Bpy Complexes,” 4801:125–35. SPIE, 2002. <a href=\"https://doi.org/10.1117/12.452446\">https://doi.org/10.1117/12.452446</a>."},"intvolume":"      4801","status":"public","volume":4801,"date_published":"2002-01-01T00:00:00Z","type":"conference","extern":1,"quality_controlled":0,"month":"01","_id":"1738","doi":"10.1117/12.452446","publisher":"SPIE","title":"Dye-sensitization of titanium dioxide thin films by Ru(II)-bpp-bpy complexes","date_updated":"2021-01-12T06:52:53Z","abstract":[{"text":"New dyes of the type Ru(II)(bdmpp)(bpy) [where bdmpp is 2,6-bis(3,5-dimethyl-N-pyrazoyl)pyridine and bpy is 2,2′-bipyridine-4,4′-dicarboxylic acid] are prepared and characterized by infra-red (IR), mass (MS) and electrospray mass spectroscopy (ES-MS) as well as 1H NMR (1D and 2D) spectroscopies. The compounds present broad and very high intensity MLCT absorption bands in the visible and can be chemically anchored on TiO2 films via ester-like linkage involving carboxylato groups. These complexes have been tested with success as potential molecular antennas in dye-sensitized solar cells. Both opaque and transparent nanocrystalline TiO2 thin film electrodes obtained by a doctor blade technique sensitized by these complexes were incorporated in a sandwich type regenerative photoelectrochemical solar cell containing 0.1M LiI +0.01M I2 in propylene carbonate as well as a platinized conductive glass counter electrode. The cell was characterized by Raman spectroscopy under anodic and cathodic bias. Two new vibration bands were observed in the lower frequency region. The first one at 112 cm-1 is due to tri-iodide formed on the photoactive electrode, and the second one at 167 cm-1 is a sign of the dye/iodide interaction and corresponds to a vibration in a chemically stable &quot;DI&quot; intermediate species. Under direct sunlight illumination (solar irradiance of 60 mW/cm2) by using a composite polymer solid state electrolyte, the cell ITO/TiO2/[Ru(II)(bdmpp)(bpy)(NCS)](PF6)/electrolyte/Pt-ITO produced a continuous photocurrent as high as 4.29mA/cm2, and gave IPCE values about half of the corresponding values obtained by the standard N3 dye under the same conditions. The photovoltage is about 600 mV and the overall energy conversion cell's efficiency is as high as 1.72%.","lang":"eng"}],"publication_status":"published","publist_id":"5385","day":"01","date_created":"2018-12-11T11:53:45Z","page":"125 - 135","conference":{"name":"Organic Photovoltaics"},"author":[{"last_name":"Falaras","first_name":"Polycarpos","full_name":"Falaras, Polycarpos"},{"last_name":"Chryssou","first_name":"Katerina","full_name":"Chryssou, Katerina"},{"last_name":"Stergiopoulos","first_name":"Thomas","full_name":"Stergiopoulos, Thomas"},{"first_name":"Ioannis","full_name":"Arabatzis, Ioannis M","last_name":"Arabatzis"},{"full_name":"Georgios Katsaros","first_name":"Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","last_name":"Katsaros"},{"full_name":"Catalano, Vincent J","first_name":"Vincent","last_name":"Catalano"},{"first_name":"Raif","full_name":"Kurtaran, Raif","last_name":"Kurtaran"},{"full_name":"Hugot-Le Goff, Anne","first_name":"Anne","last_name":"Hugot Le Goff"},{"last_name":"Bernard","full_name":"Bernard, Marie C","first_name":"Marie"}],"year":"2002"},{"abstract":[{"lang":"eng","text":"Poly(ethylene oxide)/titania polymer electrolyte based photoelectrochemical cells have been fabricated with Ru(dcbpy)2(NCS)2 complex as the sensitizer and nanoporous TiO2 films as photoanodes. The introduction of the titania filler into the poly(ethylene oxide) matrix reduces the crystallinity of the polymer and enhances the mobility of the 1-/13 - redox couple, resulting in outstanding overall conversion efficiency (4.2% under direct sunlight illumination) of the corresponding dye-sensitized nanocrystalline TiO2 solar cell, one of the best efficiencies reported to date for a solid-state device."}],"_id":"1739","publication":"Nano Letters","title":"Binary Polyethylene Oxide/Titania Solid-State Redox Electrolyte for Highly Efficient Nanocrystalline TiO2 Photoelectrochemical Cells","date_updated":"2021-01-12T06:52:53Z","publisher":"American Chemical Society","doi":"10.1021/nl025798u","month":"11","acknowledgement":"Financial support from NCSR “Demokritos” and GSRT-Greece is greatly acknowledged. ","extern":1,"quality_controlled":0,"volume":2,"type":"journal_article","date_published":"2002-11-01T00:00:00Z","status":"public","intvolume":"         2","citation":{"apa":"Stergiopoulos, T., Arabatzis, I., Katsaros, G., &#38; Falaras, P. (2002). Binary Polyethylene Oxide/Titania Solid-State Redox Electrolyte for Highly Efficient Nanocrystalline TiO2 Photoelectrochemical Cells. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/nl025798u\">https://doi.org/10.1021/nl025798u</a>","ista":"Stergiopoulos T, Arabatzis I, Katsaros G, Falaras P. 2002. Binary Polyethylene Oxide/Titania Solid-State Redox Electrolyte for Highly Efficient Nanocrystalline TiO2 Photoelectrochemical Cells. Nano Letters. 2(11), 1259–1261.","ieee":"T. Stergiopoulos, I. Arabatzis, G. Katsaros, and P. Falaras, “Binary Polyethylene Oxide/Titania Solid-State Redox Electrolyte for Highly Efficient Nanocrystalline TiO2 Photoelectrochemical Cells,” <i>Nano Letters</i>, vol. 2, no. 11. American Chemical Society, pp. 1259–1261, 2002.","short":"T. Stergiopoulos, I. Arabatzis, G. Katsaros, P. Falaras, Nano Letters 2 (2002) 1259–1261.","mla":"Stergiopoulos, Thomas, et al. “Binary Polyethylene Oxide/Titania Solid-State Redox Electrolyte for Highly Efficient Nanocrystalline TiO2 Photoelectrochemical Cells.” <i>Nano Letters</i>, vol. 2, no. 11, American Chemical Society, 2002, pp. 1259–61, doi:<a href=\"https://doi.org/10.1021/nl025798u\">10.1021/nl025798u</a>.","ama":"Stergiopoulos T, Arabatzis I, Katsaros G, Falaras P. Binary Polyethylene Oxide/Titania Solid-State Redox Electrolyte for Highly Efficient Nanocrystalline TiO2 Photoelectrochemical Cells. <i>Nano Letters</i>. 2002;2(11):1259-1261. doi:<a href=\"https://doi.org/10.1021/nl025798u\">10.1021/nl025798u</a>","chicago":"Stergiopoulos, Thomas, Iannis Arabatzis, Georgios Katsaros, and Polycarpos Falaras. “Binary Polyethylene Oxide/Titania Solid-State Redox Electrolyte for Highly Efficient Nanocrystalline TiO2 Photoelectrochemical Cells.” <i>Nano Letters</i>. American Chemical Society, 2002. <a href=\"https://doi.org/10.1021/nl025798u\">https://doi.org/10.1021/nl025798u</a>."},"year":"2002","author":[{"last_name":"Stergiopoulos","first_name":"Thomas","full_name":"Stergiopoulos, Thomas"},{"last_name":"Arabatzis","full_name":"Arabatzis, Iannis M","first_name":"Iannis"},{"full_name":"Georgios Katsaros","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios","last_name":"Katsaros"},{"last_name":"Falaras","first_name":"Polycarpos","full_name":"Falaras, Polycarpos"}],"issue":"11","page":"1259 - 1261","date_created":"2018-12-11T11:53:45Z","publication_status":"published","publist_id":"5386","day":"01"},{"author":[{"full_name":"Browning, Timothy D","first_name":"Timothy D","id":"35827D50-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8314-0177","last_name":"Browning"}],"page":"293 - 318","date_created":"2018-12-11T11:45:11Z","day":"02","publication_status":"published","publist_id":"7708","language":[{"iso":"eng"}],"year":"2002","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"date_published":"2002-10-02T00:00:00Z","type":"journal_article","volume":96,"oa_version":"Published Version","article_type":"original","article_processing_charge":"No","doi":"10.1006/jnth.2002.2800","publisher":"Academic Press","date_updated":"2023-07-26T12:15:14Z","publication":"Journal of Number Theory","month":"10","quality_controlled":"1","extern":"1","issue":"2","publication_identifier":{"issn":["0022-314X"]},"scopus_import":"1","status":"public","citation":{"ieee":"T. D. Browning, “Equal Sums of Two kth Powers,” <i>Journal of Number Theory</i>, vol. 96, no. 2. Academic Press, pp. 293–318, 2002.","short":"T.D. Browning, Journal of Number Theory 96 (2002) 293–318.","apa":"Browning, T. D. (2002). Equal Sums of Two kth Powers. <i>Journal of Number Theory</i>. Academic Press. <a href=\"https://doi.org/10.1006/jnth.2002.2800\">https://doi.org/10.1006/jnth.2002.2800</a>","ista":"Browning TD. 2002. Equal Sums of Two kth Powers. Journal of Number Theory. 96(2), 293–318.","chicago":"Browning, Timothy D. “Equal Sums of Two Kth Powers.” <i>Journal of Number Theory</i>. Academic Press, 2002. <a href=\"https://doi.org/10.1006/jnth.2002.2800\">https://doi.org/10.1006/jnth.2002.2800</a>.","mla":"Browning, Timothy D. “Equal Sums of Two Kth Powers.” <i>Journal of Number Theory</i>, vol. 96, no. 2, Academic Press, 2002, pp. 293–318, doi:<a href=\"https://doi.org/10.1006/jnth.2002.2800\">10.1006/jnth.2002.2800</a>.","ama":"Browning TD. Equal Sums of Two kth Powers. <i>Journal of Number Theory</i>. 2002;96(2):293-318. doi:<a href=\"https://doi.org/10.1006/jnth.2002.2800\">10.1006/jnth.2002.2800</a>"},"intvolume":"        96","user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","abstract":[{"lang":"eng","text":"Let k⩾5 be an integer, and let x⩾1 be an arbitrary real number. We derive a bound[Formula presented] for the number of positive integers less than or equal to x which can be represented as a sum of two non-negative coprime kth powers, in essentially more than one way."}],"title":"Equal Sums of Two kth Powers","_id":"204"},{"scopus_import":"1","file_date_updated":"2023-08-01T12:44:09Z","issue":"6","publication_identifier":{"issn":["0021-9258"]},"_id":"13438","title":"ICln Ion channel splice variants in Caenorhabditis elegans","abstract":[{"text":"ICln is an ion channel identified by expression cloning using a cDNA library from Madin-Darby canine kidney cells. In all organisms tested so far, only one transcript for the ICln protein could be identified. Here we show that two splice variants of the ICln ion channel can be found in Caenorhabditis elegans. Moreover, we show that these two splice variants of the ICln channel protein, which we termed IClnN1 and IClnN2, can be functionally reconstituted and tested in an artificial lipid bilayer. In these experiments, the IClnN1-induced currents showed no voltage-dependent inactivation, whereas the IClnN2-induced currents fully inactivated at positive potentials. The molecular entity responsible for the voltage-dependent inactivation of IClnN2 is a cluster of positively charged amino acids encoded by exon 2a, which is absent in IClnN1. Our experiments suggest a mechanism of channel inactivation that is similar to the “ball and chain” model proposed for the Shaker potassium channel,i.e. a cluster of positively charged amino acids hinders ion permeation through the channel by a molecular and voltage-dependent interaction at the inner vestibulum of the pore. This hypothesis is supported by the finding that synthetic peptides with the same amino acid sequence as the positive cluster can transform the IClnN1-induced current to the current observed after reconstitution of IClnN2. Furthermore, we show that the nematode ICln gene is embedded in an operon harboring two additional genes, which we termed Nx and Ny. Co-reconstitution of Nx and IClnN2 and functional analysis of the related currents revealed a functional interaction between the two proteins, as evidenced by the fact that the IClnN2-induced current in the presence of Nx was no longer voltage-sensitive. The experiments described indicate that the genome organization in nematodes allows an effective approach for the identification of functional partner proteins of ion channels.","lang":"eng"}],"user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","acknowledgement":"We are grateful to D. E. Clapham, E. Wöll, G. Meyer, and G. Botta for helpful discussion and/or reading of the manuscript. We also thank T. Stiernagle for providing the N2 strain of C. elegans and A. Wimmer and M. Frick for technical assistance","pmid":1,"status":"public","has_accepted_license":"1","intvolume":"       277","citation":{"apa":"Fürst, J., Ritter, M., Rudzki, J., Danzl, J. G., Gschwentner, M., Scandella, E., … Paulmichl, M. (2002). ICln Ion channel splice variants in Caenorhabditis elegans. <i>Journal of Biological Chemistry</i>. Elsevier. <a href=\"https://doi.org/10.1074/jbc.m107372200\">https://doi.org/10.1074/jbc.m107372200</a>","ista":"Fürst J, Ritter M, Rudzki J, Danzl JG, Gschwentner M, Scandella E, Jakab M, König M, Oehl B, Lang F, Deetjen P, Paulmichl M. 2002. ICln Ion channel splice variants in Caenorhabditis elegans. Journal of Biological Chemistry. 277(6), 4435–4445.","short":"J. Fürst, M. Ritter, J. Rudzki, J.G. Danzl, M. Gschwentner, E. Scandella, M. Jakab, M. König, B. Oehl, F. Lang, P. Deetjen, M. Paulmichl, Journal of Biological Chemistry 277 (2002) 4435–4445.","ieee":"J. Fürst <i>et al.</i>, “ICln Ion channel splice variants in Caenorhabditis elegans,” <i>Journal of Biological Chemistry</i>, vol. 277, no. 6. Elsevier, pp. 4435–4445, 2002.","mla":"Fürst, Johannes, et al. “ICln Ion Channel Splice Variants in Caenorhabditis Elegans.” <i>Journal of Biological Chemistry</i>, vol. 277, no. 6, Elsevier, 2002, pp. 4435–45, doi:<a href=\"https://doi.org/10.1074/jbc.m107372200\">10.1074/jbc.m107372200</a>.","ama":"Fürst J, Ritter M, Rudzki J, et al. ICln Ion channel splice variants in Caenorhabditis elegans. <i>Journal of Biological Chemistry</i>. 2002;277(6):4435-4445. doi:<a href=\"https://doi.org/10.1074/jbc.m107372200\">10.1074/jbc.m107372200</a>","chicago":"Fürst, Johannes, Markus Ritter, Jakob Rudzki, Johann G Danzl, Martin Gschwentner, Elke Scandella, Martin Jakab, et al. “ICln Ion Channel Splice Variants in Caenorhabditis Elegans.” <i>Journal of Biological Chemistry</i>. Elsevier, 2002. <a href=\"https://doi.org/10.1074/jbc.m107372200\">https://doi.org/10.1074/jbc.m107372200</a>."},"ddc":["570"],"language":[{"iso":"eng"}],"year":"2002","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"page":"4435-4445","author":[{"last_name":"Fürst","first_name":"Johannes","full_name":"Fürst, Johannes"},{"last_name":"Ritter","first_name":"Markus","full_name":"Ritter, Markus"},{"last_name":"Rudzki","full_name":"Rudzki, Jakob","first_name":"Jakob"},{"full_name":"Danzl, Johann G","first_name":"Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8559-3973","last_name":"Danzl"},{"last_name":"Gschwentner","full_name":"Gschwentner, Martin","first_name":"Martin"},{"first_name":"Elke","full_name":"Scandella, Elke","last_name":"Scandella"},{"full_name":"Jakab, Martin","first_name":"Martin","last_name":"Jakab"},{"full_name":"König, Matthias","first_name":"Matthias","last_name":"König"},{"last_name":"Oehl","full_name":"Oehl, Bernhard","first_name":"Bernhard"},{"last_name":"Lang","first_name":"Florian","full_name":"Lang, Florian"},{"last_name":"Deetjen","full_name":"Deetjen, Peter","first_name":"Peter"},{"last_name":"Paulmichl","first_name":"Markus","full_name":"Paulmichl, Markus"}],"keyword":["Cell Biology","Molecular Biology","Biochemistry"],"publication_status":"published","day":"08","date_created":"2023-08-01T12:37:50Z","publication":"Journal of Biological Chemistry","doi":"10.1074/jbc.m107372200","publisher":"Elsevier","date_updated":"2023-08-01T12:55:54Z","article_processing_charge":"No","extern":"1","file":[{"file_size":798920,"date_updated":"2023-08-01T12:44:09Z","checksum":"13abe20f78eb37ab62beb006f62c69b7","access_level":"open_access","file_name":"2002_JBC_Fuerst.pdf","success":1,"relation":"main_file","creator":"alisjak","file_id":"13439","date_created":"2023-08-01T12:44:09Z","content_type":"application/pdf"}],"oa":1,"quality_controlled":"1","month":"02","volume":277,"date_published":"2002-02-08T00:00:00Z","type":"journal_article","external_id":{"pmid":["11706026"]},"article_type":"original","oa_version":"Published Version"},{"publication_identifier":{"issn":["1431-0635"]},"issue":"1","scopus_import":"1","main_file_link":[{"url":"https://ems.press/journals/dm/articles/8965058","open_access":"1"}],"citation":{"ama":"Hausel T, Sturmfels B. Toric hyperkähler varieties. <i>Documenta Mathematica</i>. 2002;7(1):495-534. doi:<a href=\"https://doi.org/10.4171/DM/130\">10.4171/DM/130</a>","mla":"Hausel, Tamás, and Bernd Sturmfels. “Toric Hyperkähler Varieties.” <i>Documenta Mathematica</i>, vol. 7, no. 1, Deutsche Mathematiker Vereinigung, 2002, pp. 495–534, doi:<a href=\"https://doi.org/10.4171/DM/130\">10.4171/DM/130</a>.","chicago":"Hausel, Tamás, and Bernd Sturmfels. “Toric Hyperkähler Varieties.” <i>Documenta Mathematica</i>. Deutsche Mathematiker Vereinigung, 2002. <a href=\"https://doi.org/10.4171/DM/130\">https://doi.org/10.4171/DM/130</a>.","ista":"Hausel T, Sturmfels B. 2002. Toric hyperkähler varieties. Documenta Mathematica. 7(1), 495–534.","apa":"Hausel, T., &#38; Sturmfels, B. (2002). Toric hyperkähler varieties. <i>Documenta Mathematica</i>. Deutsche Mathematiker Vereinigung. <a href=\"https://doi.org/10.4171/DM/130\">https://doi.org/10.4171/DM/130</a>","ieee":"T. Hausel and B. Sturmfels, “Toric hyperkähler varieties,” <i>Documenta Mathematica</i>, vol. 7, no. 1. Deutsche Mathematiker Vereinigung, pp. 495–534, 2002.","short":"T. Hausel, B. Sturmfels, Documenta Mathematica 7 (2002) 495–534."},"intvolume":"         7","status":"public","acknowledgement":"Both authors were supported by the Miller Institute for Basic Research in Science, in the form of a Miller Research Fellowship (1999-2002) for the first author and a Miller Professorship (2000-2001) for the second author. The second author was also supported by the National Science\r\nFoundation (DMS-9970254).","_id":"1451","title":"Toric hyperkähler varieties","abstract":[{"text":"Extending work of Bielawski-Dancer 3 and Konno 14, we develop a theory of toric hyperkähler varieties, which involves toric geometry, matroid theory and convex polyhedra. The framework is a detailed study of semi-projective toric varieties, meaning GIT quotients of affine spaces by torus actions, and specifically, of Lawrence toric varieties, meaning GIT quotients of even-dimensional affine spaces by symplectic torus actions. A toric hyperkähler variety is a complete intersection in a Lawrence toric variety. Both varieties are non-compact, and they share the same cohomology ring, namely, the Stanley-Reisner ring of a matroid modulo a linear system of parameters. Familiar applications of toric geometry to combinatorics, including the Hard Lefschetz Theorem and the volume polynomials of Khovanskii-Pukhlikov 11, are extended to the hyperkähler setting. When the matroid is graphic, our construction gives the toric quiver varieties, in the sense of Nakajima 17.","lang":"eng"}],"user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","publist_id":"5741","publication_status":"published","day":"01","date_created":"2018-12-11T11:52:06Z","arxiv":1,"page":"495 - 534","author":[{"last_name":"Hausel","first_name":"Tamas","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","full_name":"Hausel, Tamas"},{"last_name":"Sturmfels","full_name":"Sturmfels, Bernd","first_name":"Bernd"}],"year":"2002","language":[{"iso":"eng"}],"external_id":{"arxiv":["math/0203096"]},"oa_version":"Published Version","article_type":"original","volume":7,"date_published":"2002-01-01T00:00:00Z","type":"journal_article","extern":"1","quality_controlled":"1","oa":1,"month":"01","publication":"Documenta Mathematica","doi":"10.4171/DM/130","date_updated":"2023-07-26T09:16:33Z","publisher":"Deutsche Mathematiker Vereinigung","article_processing_charge":"No"},{"oa_version":"None","external_id":{"pmid":["12410311"]},"intvolume":"       419","citation":{"chicago":"Coates, Juliet C., and Mario de Bono. “Antagonistic Pathways in Neurons Exposed to Body Fluid Regulate Social Feeding in Caenorhabditis Elegans.” <i>Nature</i>. Springer Nature, 2002. <a href=\"https://doi.org/10.1038/nature01170\">https://doi.org/10.1038/nature01170</a>.","ama":"Coates JC, de Bono M. Antagonistic pathways in neurons exposed to body fluid regulate social feeding in Caenorhabditis elegans. <i>Nature</i>. 2002;419(6910):925-929. doi:<a href=\"https://doi.org/10.1038/nature01170\">10.1038/nature01170</a>","mla":"Coates, Juliet C., and Mario de Bono. “Antagonistic Pathways in Neurons Exposed to Body Fluid Regulate Social Feeding in Caenorhabditis Elegans.” <i>Nature</i>, vol. 419, no. 6910, Springer Nature, 2002, pp. 925–29, doi:<a href=\"https://doi.org/10.1038/nature01170\">10.1038/nature01170</a>.","ieee":"J. C. Coates and M. de Bono, “Antagonistic pathways in neurons exposed to body fluid regulate social feeding in Caenorhabditis elegans,” <i>Nature</i>, vol. 419, no. 6910. Springer Nature, pp. 925–929, 2002.","short":"J.C. Coates, M. de Bono, Nature 419 (2002) 925–929.","ista":"Coates JC, de Bono M. 2002. Antagonistic pathways in neurons exposed to body fluid regulate social feeding in Caenorhabditis elegans. Nature. 419(6910), 925–929.","apa":"Coates, J. C., &#38; de Bono, M. (2002). Antagonistic pathways in neurons exposed to body fluid regulate social feeding in Caenorhabditis elegans. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nature01170\">https://doi.org/10.1038/nature01170</a>"},"volume":419,"type":"journal_article","date_published":"2002-10-31T00:00:00Z","status":"public","pmid":1,"month":"10","extern":"1","quality_controlled":"1","abstract":[{"lang":"eng","text":"Wild isolates of Caenorhabditis elegans can feed either alone or in groups1,2. This natural variation in behaviour is associated with a single residue difference in NPR-1, a predicted G-protein-coupled neuropeptide receptor related to Neuropeptide Y receptors2. Here we show that the NPR-1 isoform associated with solitary feeding acts in neurons exposed to the body fluid to inhibit social feeding. Furthermore, suppressing the activity of these neurons, called AQR, PQR and URX, using an activated K+ channel, inhibits social feeding. NPR-1 activity in AQR, PQR and URX neurons seems to suppress social feeding by antagonizing signalling through a cyclic GMP-gated ion channel encoded by tax-2 and tax-4. We show that mutations in tax-2 or tax-4 disrupt social feeding, and that tax-4 is required in several neurons for social feeding, including one or more of AQR, PQR and URX. The AQR, PQR and URX neurons are unusual in C. elegans because they are directly exposed to the pseudocoelomic body fluid3. Our data suggest a model in which these neurons integrate antagonistic signals to control the choice between social and solitary feeding behaviour."}],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","_id":"6158","publication":"Nature","publisher":"Springer Nature","title":"Antagonistic pathways in neurons exposed to body fluid regulate social feeding in Caenorhabditis elegans","date_updated":"2021-01-12T08:06:26Z","doi":"10.1038/nature01170","publication_identifier":{"issn":["0028-0836"]},"date_created":"2019-03-21T10:09:20Z","publication_status":"published","day":"31","issue":"6910","author":[{"first_name":"Juliet C.","full_name":"Coates, Juliet C.","last_name":"Coates"},{"orcid":"0000-0001-8347-0443","last_name":"de Bono","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","first_name":"Mario","full_name":"de Bono, Mario"}],"page":"925-929","year":"2002","language":[{"iso":"eng"}]},{"year":"2002","language":[{"iso":"eng"}],"issue":"6910","author":[{"id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","first_name":"Mario","full_name":"de Bono, Mario","last_name":"de Bono","orcid":"0000-0001-8347-0443"},{"last_name":"Tobin","full_name":"Tobin, David M.","first_name":"David M."},{"last_name":"Davis","first_name":"M. Wayne","full_name":"Davis, M. Wayne"},{"last_name":"Avery","first_name":"Leon","full_name":"Avery, Leon"},{"first_name":"Cornelia I.","full_name":"Bargmann, Cornelia I.","last_name":"Bargmann"}],"page":"899-903","publication_identifier":{"issn":["0028-0836"]},"date_created":"2019-03-21T10:27:04Z","day":"31","publication_status":"published","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","abstract":[{"text":"Natural Caenorhabditis elegans isolates exhibit either social or solitary feeding on bacteria. We show here that social feeding is induced by nociceptive neurons that detect adverse or stressful conditions. Ablation of the nociceptive neurons ASH and ADL transforms social animals into solitary feeders. Social feeding is probably due to the sensation of noxious chemicals by ASH and ADL neurons; it requires the genes ocr-2 and osm-9, which encode TRP-related transduction channels, and odr-4 and odr-8, which are required to localize sensory chemoreceptors to cilia. Other sensory neurons may suppress social feeding, as social feeding in ocr-2 and odr-4 mutants is restored by mutations in osm-3, a gene required for the development of 26 ciliated sensory neurons. Our data suggest a model for regulation of social feeding by opposing sensory inputs: aversive inputs to nociceptive neurons promote social feeding, whereas antagonistic inputs from neurons that express osm-3 inhibit aggregation.","lang":"eng"}],"title":"Social feeding in Caenorhabditis elegans is induced by neurons that detect aversive stimuli","date_updated":"2021-01-12T08:06:27Z","doi":"10.1038/nature01169","publisher":"Springer Nature","_id":"6159","publication":"Nature","month":"10","pmid":1,"quality_controlled":"1","extern":"1","type":"journal_article","date_published":"2002-10-31T00:00:00Z","volume":419,"status":"public","oa_version":"None","external_id":{"pmid":["12410303"]},"intvolume":"       419","citation":{"chicago":"Bono, Mario de, David M. Tobin, M. Wayne Davis, Leon Avery, and Cornelia I. Bargmann. “Social Feeding in Caenorhabditis Elegans Is Induced by Neurons That Detect Aversive Stimuli.” <i>Nature</i>. Springer Nature, 2002. <a href=\"https://doi.org/10.1038/nature01169\">https://doi.org/10.1038/nature01169</a>.","mla":"de Bono, Mario, et al. “Social Feeding in Caenorhabditis Elegans Is Induced by Neurons That Detect Aversive Stimuli.” <i>Nature</i>, vol. 419, no. 6910, Springer Nature, 2002, pp. 899–903, doi:<a href=\"https://doi.org/10.1038/nature01169\">10.1038/nature01169</a>.","ama":"de Bono M, Tobin DM, Davis MW, Avery L, Bargmann CI. Social feeding in Caenorhabditis elegans is induced by neurons that detect aversive stimuli. <i>Nature</i>. 2002;419(6910):899-903. doi:<a href=\"https://doi.org/10.1038/nature01169\">10.1038/nature01169</a>","ieee":"M. de Bono, D. M. Tobin, M. W. Davis, L. Avery, and C. I. Bargmann, “Social feeding in Caenorhabditis elegans is induced by neurons that detect aversive stimuli,” <i>Nature</i>, vol. 419, no. 6910. Springer Nature, pp. 899–903, 2002.","short":"M. de Bono, D.M. Tobin, M.W. Davis, L. Avery, C.I. Bargmann, Nature 419 (2002) 899–903.","apa":"de Bono, M., Tobin, D. M., Davis, M. W., Avery, L., &#38; Bargmann, C. I. (2002). Social feeding in Caenorhabditis elegans is induced by neurons that detect aversive stimuli. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nature01169\">https://doi.org/10.1038/nature01169</a>","ista":"de Bono M, Tobin DM, Davis MW, Avery L, Bargmann CI. 2002. Social feeding in Caenorhabditis elegans is induced by neurons that detect aversive stimuli. Nature. 419(6910), 899–903."}},{"oa_version":"None","article_type":"review","external_id":{"pmid":["12225775"]},"date_published":"2002-05-01T00:00:00Z","type":"journal_article","volume":79,"quality_controlled":"1","extern":"1","month":"05","date_updated":"2023-07-17T11:36:32Z","doi":"10.1016/S0079-6107(02)00009-3","publisher":"Elsevier","publication":"Progress in Biophysics and Molecular Biology","article_processing_charge":"No","day":"01","publist_id":"2980","publication_status":"published","date_created":"2018-12-11T12:03:14Z","page":"1 - 43","author":[{"last_name":"Mueller","full_name":"Mueller, Daniel","first_name":"Daniel"},{"id":"33BA6C30-F248-11E8-B48F-1D18A9856A87","first_name":"Harald L","full_name":"Janovjak, Harald L","last_name":"Janovjak","orcid":"0000-0002-8023-9315"},{"first_name":"Tiina","full_name":"Lehto, Tiina","last_name":"Lehto"},{"last_name":"Kuerschner","first_name":"Lars","full_name":"Kuerschner, Lars"},{"last_name":"Anderson","full_name":"Anderson, Kurt","first_name":"Kurt"}],"language":[{"iso":"eng"}],"year":"2002","citation":{"ieee":"D. Mueller, H. L. Janovjak, T. Lehto, L. Kuerschner, and K. Anderson, “Observing structure, function and assembly of single proteins by AFM,” <i>Progress in Biophysics and Molecular Biology</i>, vol. 79, no. 1–3. Elsevier, pp. 1–43, 2002.","short":"D. Mueller, H.L. Janovjak, T. Lehto, L. Kuerschner, K. Anderson, Progress in Biophysics and Molecular Biology 79 (2002) 1–43.","apa":"Mueller, D., Janovjak, H. L., Lehto, T., Kuerschner, L., &#38; Anderson, K. (2002). Observing structure, function and assembly of single proteins by AFM. <i>Progress in Biophysics and Molecular Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/S0079-6107(02)00009-3\">https://doi.org/10.1016/S0079-6107(02)00009-3</a>","ista":"Mueller D, Janovjak HL, Lehto T, Kuerschner L, Anderson K. 2002. Observing structure, function and assembly of single proteins by AFM. Progress in Biophysics and Molecular Biology. 79(1–3), 1–43.","chicago":"Mueller, Daniel, Harald L Janovjak, Tiina Lehto, Lars Kuerschner, and Kurt Anderson. “Observing Structure, Function and Assembly of Single Proteins by AFM.” <i>Progress in Biophysics and Molecular Biology</i>. Elsevier, 2002. <a href=\"https://doi.org/10.1016/S0079-6107(02)00009-3\">https://doi.org/10.1016/S0079-6107(02)00009-3</a>.","mla":"Mueller, Daniel, et al. “Observing Structure, Function and Assembly of Single Proteins by AFM.” <i>Progress in Biophysics and Molecular Biology</i>, vol. 79, no. 1–3, Elsevier, 2002, pp. 1–43, doi:<a href=\"https://doi.org/10.1016/S0079-6107(02)00009-3\">10.1016/S0079-6107(02)00009-3</a>.","ama":"Mueller D, Janovjak HL, Lehto T, Kuerschner L, Anderson K. Observing structure, function and assembly of single proteins by AFM. <i>Progress in Biophysics and Molecular Biology</i>. 2002;79(1-3):1-43. doi:<a href=\"https://doi.org/10.1016/S0079-6107(02)00009-3\">10.1016/S0079-6107(02)00009-3</a>"},"intvolume":"        79","status":"public","pmid":1,"title":"Observing structure, function and assembly of single proteins by AFM","_id":"3421","user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","abstract":[{"lang":"eng","text":"Single molecule experiments provide insight into the individuality of biological macromolecules, their unique function, reaction pathways, trajectories and molecular interactions. The exceptional signal-to-noise ratio of the atomic force microscope allows individual proteins to be imaged under physiologically relevant conditions at a lateral resolution of 0.5–1 nm and a vertical resolution of 0.1–0.2 nm. Recently, it has become possible to observe single molecule events using this technique. This capability is reviewed on various water-soluble and membrane proteins. Examples of the observation of function, variability, and assembly of single proteins are discussed. Statistical analysis is important to extend conclusions derived from single molecule experiments to protein species. Such approaches allow the classification of protein conformations and movements. Recent developments of probe microscopy techniques allow simultaneous measurement of multiple signals on individual macromolecules, and greatly extend the range of experiments possible for probing biological systems at the molecular level. Biologists exploring molecular mechanisms will benefit from a burgeoning of scanning probe microscopes and of their future combination with molecular biological experiments."}],"publication_identifier":{"issn":["0079-6107"]},"issue":"1-3","scopus_import":"1"},{"quality_controlled":"1","extern":"1","month":"06","date_updated":"2023-07-17T11:29:06Z","publisher":"Informa Healthcare","publication":"Biotechniques","article_processing_charge":"No","article_type":"original","oa_version":"None","external_id":{"pmid":["12074169"]},"date_published":"2002-06-01T00:00:00Z","type":"journal_article","volume":32,"year":"2002","language":[{"iso":"eng"}],"day":"01","publist_id":"2979","publication_status":"published","date_created":"2018-12-11T12:03:15Z","page":"1372 - 1379","author":[{"last_name":"Müller","first_name":"Patrick","full_name":"Müller, Patrick"},{"id":"33BA6C30-F248-11E8-B48F-1D18A9856A87","first_name":"Harald L","full_name":"Janovjak, Harald L","last_name":"Janovjak","orcid":"0000-0002-8023-9315"},{"full_name":"Miserez, Andre","first_name":"Andre","last_name":"Miserez"},{"full_name":"Dobbie, Zuzana","first_name":"Zuzana","last_name":"Dobbie"}],"pmid":1,"title":"Processing of gene expression data generated by quantitative real-time RT-PCR","_id":"3422","user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","abstract":[{"text":"Quantitative real-time PCR represents a highly sensitive and powerful technique for the quantitation of nucleic acids. It has a tremendous potential for the high-throughput analysis of gene expression in research and routine diagnostics. However, the major hurdle is not the practical performance of the experiments themselves but rather the efficient evaluation and the mathematical and statistical analysis of the enormous amount of data gained by this technology, as these functions are not included in the software provided by the manufacturers of the detection systems. In this work, we focus on the mathematical evaluation and analysis of the data generated by quantitative real-time PCR, the calculation of the final results, the propagation of experimental variation of the measured values to the final results, and the statistical analysis. We developed a Microsoft Excel-based software application coded in Visual Basic for Applications, called Q-Gene, which addresses these points. Q-Gene manages and expedites the planning, performance, and evaluation of quantitative real-time PCR experiments, as well as the mathematical and statistical analysis, storage, and graphical presentation of the data. The Q-Gene software application is a tool to cope with complex quantitative real-time PCR experiments at a high-throughput scale and considerably expedites and rationalizes the experimental setup, data analysis, and data management while ensuring highest reproducibility.","lang":"eng"}],"intvolume":"        32","citation":{"ista":"Müller P, Janovjak HL, Miserez A, Dobbie Z. 2002. Processing of gene expression data generated by quantitative real-time RT-PCR. Biotechniques. 32(6), 1372–1379.","apa":"Müller, P., Janovjak, H. L., Miserez, A., &#38; Dobbie, Z. (2002). Processing of gene expression data generated by quantitative real-time RT-PCR. <i>Biotechniques</i>. Informa Healthcare.","ieee":"P. Müller, H. L. Janovjak, A. Miserez, and Z. Dobbie, “Processing of gene expression data generated by quantitative real-time RT-PCR,” <i>Biotechniques</i>, vol. 32, no. 6. Informa Healthcare, pp. 1372–1379, 2002.","short":"P. Müller, H.L. Janovjak, A. Miserez, Z. Dobbie, Biotechniques 32 (2002) 1372–1379.","ama":"Müller P, Janovjak HL, Miserez A, Dobbie Z. Processing of gene expression data generated by quantitative real-time RT-PCR. <i>Biotechniques</i>. 2002;32(6):1372-1379.","mla":"Müller, Patrick, et al. “Processing of Gene Expression Data Generated by Quantitative Real-Time RT-PCR.” <i>Biotechniques</i>, vol. 32, no. 6, Informa Healthcare, 2002, pp. 1372–79.","chicago":"Müller, Patrick, Harald L Janovjak, Andre Miserez, and Zuzana Dobbie. “Processing of Gene Expression Data Generated by Quantitative Real-Time RT-PCR.” <i>Biotechniques</i>. Informa Healthcare, 2002."},"status":"public","scopus_import":"1","publication_identifier":{"issn":["0736-6205"]},"issue":"6"},{"date_created":"2018-12-11T12:03:15Z","day":"01","publication_status":"published","publist_id":"2978","author":[{"full_name":"Bauer, Wolfgang","first_name":"Wolfgang","last_name":"Bauer"},{"orcid":"0000-0003-4398-476X","last_name":"Bollenbach","id":"3E6DB97A-F248-11E8-B48F-1D18A9856A87","first_name":"Mark Tobias","full_name":"Bollenbach, Mark Tobias"},{"first_name":"Marko","full_name":"Kleine Berkenbusch, Marko","last_name":"Kleine Berkenbusch"},{"full_name":"Harreis, Holger","first_name":"Holger","last_name":"Harreis"}],"conference":{"start_date":"2002-01-20","name":"Winter Workshop on Nuclear Dynamics","location":"Nassau, Bahamas","end_date":"2002-01-22"},"page":"111 - 118","year":"2002","language":[{"iso":"eng"}],"oa_version":"None","citation":{"ama":"Bauer W, Bollenbach MT, Kleine Berkenbusch M, Harreis H. The percolation interpretation of the nuclear fragmentation phase transition. In: <i>Proceedings of the 18th Winter Workshop on Nuclear Dynamics</i>. EP Systema; 2002:111-118.","mla":"Bauer, Wolfgang, et al. “The Percolation Interpretation of the Nuclear Fragmentation Phase Transition.” <i>Proceedings of the 18th Winter Workshop on Nuclear Dynamics</i>, EP Systema, 2002, pp. 111–18.","chicago":"Bauer, Wolfgang, Mark Tobias Bollenbach, Marko Kleine Berkenbusch, and Holger Harreis. “The Percolation Interpretation of the Nuclear Fragmentation Phase Transition.” In <i>Proceedings of the 18th Winter Workshop on Nuclear Dynamics</i>, 111–18. EP Systema, 2002.","ista":"Bauer W, Bollenbach MT, Kleine Berkenbusch M, Harreis H. 2002. The percolation interpretation of the nuclear fragmentation phase transition. Proceedings of the 18th Winter Workshop on Nuclear Dynamics. Winter Workshop on Nuclear Dynamics, 111–118.","apa":"Bauer, W., Bollenbach, M. T., Kleine Berkenbusch, M., &#38; Harreis, H. (2002). The percolation interpretation of the nuclear fragmentation phase transition. In <i>Proceedings of the 18th Winter Workshop on Nuclear Dynamics</i> (pp. 111–118). Nassau, Bahamas: EP Systema.","short":"W. Bauer, M.T. Bollenbach, M. Kleine Berkenbusch, H. Harreis, in:, Proceedings of the 18th Winter Workshop on Nuclear Dynamics, EP Systema, 2002, pp. 111–118.","ieee":"W. Bauer, M. T. Bollenbach, M. Kleine Berkenbusch, and H. Harreis, “The percolation interpretation of the nuclear fragmentation phase transition,” in <i>Proceedings of the 18th Winter Workshop on Nuclear Dynamics</i>, Nassau, Bahamas, 2002, pp. 111–118."},"type":"conference","date_published":"2002-01-01T00:00:00Z","status":"public","month":"01","extern":"1","user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","article_processing_charge":"No","publisher":"EP Systema","date_updated":"2023-07-17T11:15:14Z","title":"The percolation interpretation of the nuclear fragmentation phase transition","publication":"Proceedings of the 18th Winter Workshop on Nuclear Dynamics","_id":"3423"},{"language":[{"iso":"eng"}],"year":"2002","author":[{"orcid":"0000-0003-4398-476X","last_name":"Bollenbach","full_name":"Bollenbach, Mark Tobias","first_name":"Mark Tobias","id":"3E6DB97A-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Wolfgang","full_name":"Bauer, Wolfgang","last_name":"Bauer"}],"page":"219 - 232","alternative_title":["Exotic Clustering, American Institute of Physics Conference Proceedings"],"conference":{"end_date":"2002-06-14","location":"Catania, Italy","name":"CRIS: Catania Relativistic Ion Studies ","start_date":"2002-06-10"},"publication_identifier":{"isbn":["9781510832008"]},"date_created":"2018-12-11T12:03:15Z","publist_id":"2977","publication_status":"published","day":"26","abstract":[{"text":"We give a brief overview of the current understanding of the explosion mechanism of core collapse supernovae. Our main focus is the impact of rotation on the explosion. Recent observations of the polarization of the light emitted by supernova explosions indicate that there are large deviations from spherical symmetry in the very heart of the explosion the origin of which is unknown. We use the new approach of a three dimensional test particle based simulation to simulate the infall phase of a supernova event. The underlying microphysics is simplified to make this computationally possible. A systematic study of the influence of rotation mainly during the infall phase of the collapse of a typical iron core is performed. Indications for significant deviations from spherical symmetry are found in our very rapidly rotating models. © 2002 American Institute of Physics\r\n","lang":"eng"}],"user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","article_processing_charge":"No","_id":"3424","publisher":"American Institute of Physics","date_updated":"2023-07-17T11:05:27Z","doi":"10.1063/1.1523196 ","title":"3d supernovae collapse calculations","month":"11","extern":"1","quality_controlled":"1","volume":644,"date_published":"2002-11-26T00:00:00Z","type":"conference","status":"public","oa_version":"None","intvolume":"       644","citation":{"apa":"Bollenbach, M. T., &#38; Bauer, W. (2002). 3d supernovae collapse calculations (Vol. 644, pp. 219–232). Presented at the CRIS: Catania Relativistic Ion Studies , Catania, Italy: American Institute of Physics. <a href=\"https://doi.org/10.1063/1.1523196 \">https://doi.org/10.1063/1.1523196 </a>","ista":"Bollenbach MT, Bauer W. 2002. 3d supernovae collapse calculations. CRIS: Catania Relativistic Ion Studies , Exotic Clustering, American Institute of Physics Conference Proceedings, vol. 644, 219–232.","short":"M.T. Bollenbach, W. Bauer, in:, American Institute of Physics, 2002, pp. 219–232.","ieee":"M. T. Bollenbach and W. Bauer, “3d supernovae collapse calculations,” presented at the CRIS: Catania Relativistic Ion Studies , Catania, Italy, 2002, vol. 644, pp. 219–232.","mla":"Bollenbach, Mark Tobias, and Wolfgang Bauer. <i>3d Supernovae Collapse Calculations</i>. Vol. 644, American Institute of Physics, 2002, pp. 219–32, doi:<a href=\"https://doi.org/10.1063/1.1523196 \">10.1063/1.1523196 </a>.","ama":"Bollenbach MT, Bauer W. 3d supernovae collapse calculations. In: Vol 644. American Institute of Physics; 2002:219-232. doi:<a href=\"https://doi.org/10.1063/1.1523196 \">10.1063/1.1523196 </a>","chicago":"Bollenbach, Mark Tobias, and Wolfgang Bauer. “3d Supernovae Collapse Calculations,” 644:219–32. American Institute of Physics, 2002. <a href=\"https://doi.org/10.1063/1.1523196 \">https://doi.org/10.1063/1.1523196 </a>."}},{"quality_controlled":0,"extern":1,"month":"01","publisher":"Elsevier","date_updated":"2021-01-12T07:43:31Z","title":"Implementation of shape grammar for plan analysis","_id":"3448","citation":{"short":"S. Mallick, K. Chatterjee, A. Merchant, P. Dasgupta, in:, Elsevier, 2002.","ieee":"S. Mallick, K. Chatterjee, A. Merchant, and P. Dasgupta, “Implementation of shape grammar for plan analysis,” presented at the IT-Built: Information Technology For Built Environment, 2002.","ista":"Mallick S, Chatterjee K, Merchant A, Dasgupta P. 2002. Implementation of shape grammar for plan analysis. IT-Built: Information Technology For Built Environment.","apa":"Mallick, S., Chatterjee, K., Merchant, A., &#38; Dasgupta, P. (2002). Implementation of shape grammar for plan analysis. Presented at the IT-Built: Information Technology For Built Environment, Elsevier.","chicago":"Mallick, Sanhita, Krishnendu Chatterjee, Arif Merchant, and Pallab Dasgupta. “Implementation of Shape Grammar for Plan Analysis.” Elsevier, 2002.","ama":"Mallick S, Chatterjee K, Merchant A, Dasgupta P. Implementation of shape grammar for plan analysis. In: Elsevier; 2002.","mla":"Mallick, Sanhita, et al. <i>Implementation of Shape Grammar for Plan Analysis</i>. Elsevier, 2002."},"status":"public","date_published":"2002-01-15T00:00:00Z","type":"conference","year":"2002","day":"15","publication_status":"published","publist_id":"2939","date_created":"2018-12-11T12:03:23Z","conference":{"name":"IT-Built: Information Technology For Built Environment"},"author":[{"last_name":"Mallick","first_name":"Sanhita","full_name":"Mallick, Sanhita"},{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu","full_name":"Krishnendu Chatterjee","last_name":"Chatterjee","orcid":"0000-0002-4561-241X"},{"last_name":"Merchant","first_name":"Arif","full_name":"Merchant, Arif N"},{"full_name":"Dasgupta, Pallab","first_name":"Pallab","last_name":"Dasgupta"}]},{"scopus_import":"1","issue":"3","publication_identifier":{"issn":["0031-6768"]},"title":"Patch-clamp recording in brain slices with improved slicer technology","_id":"3497","user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","abstract":[{"text":"The use of advanced patch-clamp recording techniques in brain slices, such as simultaneous recording from multiple neurons and recording from dendrites or presynaptic terminals, demands slices of the highest quality. In this context the mechanics of the tissue slicer are an important factor. Ideally, a tissue slicer should generate large-amplitude and high-frequency movements of the cutting blade in a horizontal axis, with minimal vibrations in the vertical axis. We developed a vibroslicer that fulfils these in part conflicting requirements. The oscillator is a permanent-magnet-coil-leaf-spring system. Using an auto-resonant mechano-electrical feedback circuit, large horizontal oscillations (up to 3 mm peak-to-peak) with high frequency (,90 Hz) are generated. To minimize vertical vibrations, an adjustment mechanism was employed that allowed alignment of the cutting edge of the blade with the major axis of the oscillation. A vibroprobe device was used to monitor vertical vibrations during adjustment. The system is based on the shading of the light path between a light-emitting diode (LED) and a photodiode. Vibroprobe monitoring revealed that the vibroslicer, after appropriate adjustment, generated vertical vibrations of &lt;1 µm, significantly less than many commercial tissue slicers. Light- and electron-microscopic analysis of surface layers of slices cut with the vibroslicer showed that cellular elements, dendritic processes and presynaptic terminals are well preserved under these conditions, as required for patch-clamp recording from these structures.","lang":"eng"}],"acknowledgement":"We thank Dr. M. Frotscher for reading the manuscript, and H. Kressner, R. Laufersweiler, and A. Bühler for help with the construction of several prototypes of vibroslicer and vibroprobe. We also thank A. Blomenkamp, K. Winterhalter, B. Joch, and A. Schneider for technical assistance. This work was supported by grants of the Deutsche Forschungsgemeinschaft\r\n(SFB 505/C5, C6) and the Human Frontiers Science Program Organization (RG0017/1998-B).","pmid":1,"status":"public","citation":{"ama":"Geiger J, Bischofberger J, Vida I, et al. Patch-clamp recording in brain slices with improved slicer technology. <i>Pflugers Archiv : European Journal of Physiology</i>. 2002;443(3):491-501. doi:<a href=\"https://doi.org/10.1007/s00424-001-0735-3\">10.1007/s00424-001-0735-3</a>","mla":"Geiger, Jörg, et al. “Patch-Clamp Recording in Brain Slices with Improved Slicer Technology.” <i>Pflugers Archiv : European Journal of Physiology</i>, vol. 443, no. 3, Springer, 2002, pp. 491–501, doi:<a href=\"https://doi.org/10.1007/s00424-001-0735-3\">10.1007/s00424-001-0735-3</a>.","chicago":"Geiger, Jörg, Joseph Bischofberger, Imre Vida, Ulrich Fröbe, S Pfitzinger, H. Weber, Klaus Haverkampf, and Peter M Jonas. “Patch-Clamp Recording in Brain Slices with Improved Slicer Technology.” <i>Pflugers Archiv : European Journal of Physiology</i>. Springer, 2002. <a href=\"https://doi.org/10.1007/s00424-001-0735-3\">https://doi.org/10.1007/s00424-001-0735-3</a>.","ista":"Geiger J, Bischofberger J, Vida I, Fröbe U, Pfitzinger S, Weber H, Haverkampf K, Jonas PM. 2002. Patch-clamp recording in brain slices with improved slicer technology. Pflugers Archiv : European Journal of Physiology. 443(3), 491–501.","apa":"Geiger, J., Bischofberger, J., Vida, I., Fröbe, U., Pfitzinger, S., Weber, H., … Jonas, P. M. (2002). Patch-clamp recording in brain slices with improved slicer technology. <i>Pflugers Archiv : European Journal of Physiology</i>. Springer. <a href=\"https://doi.org/10.1007/s00424-001-0735-3\">https://doi.org/10.1007/s00424-001-0735-3</a>","short":"J. Geiger, J. Bischofberger, I. Vida, U. Fröbe, S. Pfitzinger, H. Weber, K. Haverkampf, P.M. Jonas, Pflugers Archiv : European Journal of Physiology 443 (2002) 491–501.","ieee":"J. Geiger <i>et al.</i>, “Patch-clamp recording in brain slices with improved slicer technology,” <i>Pflugers Archiv : European Journal of Physiology</i>, vol. 443, no. 3. Springer, pp. 491–501, 2002."},"intvolume":"       443","year":"2002","language":[{"iso":"eng"}],"page":"491 - 501","author":[{"full_name":"Geiger, Jörg","first_name":"Jörg","last_name":"Geiger"},{"first_name":"Joseph","full_name":"Bischofberger, Joseph","last_name":"Bischofberger"},{"last_name":"Vida","first_name":"Imre","full_name":"Vida, Imre"},{"last_name":"Fröbe","first_name":"Ulrich","full_name":"Fröbe, Ulrich"},{"full_name":"Pfitzinger, S","first_name":"S","last_name":"Pfitzinger"},{"first_name":"H.","full_name":"Weber, H.","last_name":"Weber"},{"last_name":"Haverkampf","first_name":"Klaus","full_name":"Haverkampf, Klaus"},{"first_name":"Peter M","id":"353C1B58-F248-11E8-B48F-1D18A9856A87","full_name":"Jonas, Peter M","last_name":"Jonas","orcid":"0000-0001-5001-4804"}],"day":"01","publication_status":"published","publist_id":"2890","date_created":"2018-12-11T12:03:38Z","publisher":"Springer","date_updated":"2023-07-17T07:36:37Z","doi":"10.1007/s00424-001-0735-3","publication":"Pflugers Archiv : European Journal of Physiology","article_processing_charge":"No","quality_controlled":"1","extern":"1","month":"01","type":"journal_article","date_published":"2002-01-01T00:00:00Z","volume":443,"article_type":"original","external_id":{"pmid":["11810221"]},"oa_version":"None"},{"oa":1,"ipc":"G16Z99/00 ; G06K9/28 ; G06T17/10 ; G06T17/20","extern":"1","month":"04","title":"Methods of generating three-dimensional digital models of objects by wrapping point cloud data points","date_updated":"2022-01-05T14:09:36Z","_id":"3508","article_processing_charge":"No","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","abstract":[{"lang":"eng","text":"A method of automatic conversion of a physical object into a three-dimensional digital model. The method acquires a set of measured data points on the surface of a physical model. From the measured data points, the method reconstructs a digital model of the physical object using a Delaunay complex of the points, a flow strcuture of the simplicies in the Delaunay complex and retracting the Delaunay complex into a digital model of the physical object using the flow structure. The method then outputs the digital model of the physical object."}],"citation":{"chicago":"Edelsbrunner, Herbert, and Ping Fu. “Methods of Generating Three-Dimensional Digital Models of Objects by Wrapping Point Cloud Data Points,” 2002.","mla":"Edelsbrunner, Herbert, and Ping Fu. <i>Methods of Generating Three-Dimensional Digital Models of Objects by Wrapping Point Cloud Data Points</i>. 2002.","ama":"Edelsbrunner H, Fu P. Methods of generating three-dimensional digital models of objects by wrapping point cloud data points. 2002.","short":"H. Edelsbrunner, P. Fu, (2002).","ieee":"H. Edelsbrunner and P. Fu, “Methods of generating three-dimensional digital models of objects by wrapping point cloud data points.” 2002.","apa":"Edelsbrunner, H., &#38; Fu, P. (2002). Methods of generating three-dimensional digital models of objects by wrapping point cloud data points.","ista":"Edelsbrunner H, Fu P. 2002. Methods of generating three-dimensional digital models of objects by wrapping point cloud data points."},"publication_date":"2002-04-23","main_file_link":[{"open_access":"1","url":"https://patents.google.com/patent/US6377865B1"}],"oa_version":"Published Version","status":"public","ipn":"US6377865B1","date_published":"2002-04-23T00:00:00Z","type":"patent","year":"2002","day":"23","publist_id":"2879","date_created":"2018-12-11T12:03:42Z","applicant":["Raindrop Geomagic, Inc."],"author":[{"full_name":"Edelsbrunner, Herbert","first_name":"Herbert","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","last_name":"Edelsbrunner","orcid":"0000-0002-9823-6833"},{"last_name":"Fu","first_name":"Ping","full_name":"Fu, Ping"}]}]