---
_id: '1449'
abstract:
- lang: eng
  text: In this paper we consider a canonical compactification of M, the moduli space
    of stable Higgs bundles with fixed determinant of odd degree over a Riemann surface
    Σ, producing a projective variety M̄ = M ∪ Z. We give a detailed study of the
    spaces M̄, Z and M. In doing so we reprove some assertions of Laumon and Thaddeus
    on the nilpotent cone.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Tamas
  full_name: Hausel, Tamas
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
citation:
  ama: Hausel T. Compactification of moduli of Higgs bundles. <i>Journal fur die Reine
    und Angewandte Mathematik</i>. 1998;1998(503):169-192. doi:<a href="https://doi.org/10.1515/crll.1998.096">10.1515/crll.1998.096</a>
  apa: Hausel, T. (1998). Compactification of moduli of Higgs bundles. <i>Journal
    Fur Die Reine Und Angewandte Mathematik</i>. Walter de Gruyter. <a href="https://doi.org/10.1515/crll.1998.096">https://doi.org/10.1515/crll.1998.096</a>
  chicago: Hausel, Tamás. “Compactification of Moduli of Higgs Bundles.” <i>Journal
    Fur Die Reine Und Angewandte Mathematik</i>. Walter de Gruyter, 1998. <a href="https://doi.org/10.1515/crll.1998.096">https://doi.org/10.1515/crll.1998.096</a>.
  ieee: T. Hausel, “Compactification of moduli of Higgs bundles,” <i>Journal fur die
    Reine und Angewandte Mathematik</i>, vol. 1998, no. 503. Walter de Gruyter, pp.
    169–192, 1998.
  ista: Hausel T. 1998. Compactification of moduli of Higgs bundles. Journal fur die
    Reine und Angewandte Mathematik. 1998(503), 169–192.
  mla: Hausel, Tamás. “Compactification of Moduli of Higgs Bundles.” <i>Journal Fur
    Die Reine Und Angewandte Mathematik</i>, vol. 1998, no. 503, Walter de Gruyter,
    1998, pp. 169–92, doi:<a href="https://doi.org/10.1515/crll.1998.096">10.1515/crll.1998.096</a>.
  short: T. Hausel, Journal Fur Die Reine Und Angewandte Mathematik 1998 (1998) 169–192.
date_created: 2018-12-11T11:52:05Z
date_published: 1998-10-01T00:00:00Z
date_updated: 2022-09-01T13:51:07Z
day: '01'
doi: 10.1515/crll.1998.096
extern: '1'
external_id:
  arxiv:
  - math/9804083
intvolume: '      1998'
issue: '503'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/math/9804083
month: '10'
oa: 1
oa_version: Preprint
page: 169 - 192
publication: Journal fur die Reine und Angewandte Mathematik
publication_identifier:
  issn:
  - 1435-5345
publication_status: published
publisher: Walter de Gruyter
publist_id: '5746'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Compactification of moduli of Higgs bundles
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 1998
year: '1998'
...
---
_id: '1450'
abstract:
- lang: eng
  text: In this paper we consider the topological side of a problem which is the analogue
    of Sen's S-duality testing conjecture for Hitchin's moduli space M of rank 2 stable
    Higgs bundles of fixed determinant of odd degree over a Riemann surface ∑. We
    prove that all intersection numbers in the compactly supported cohomology of M
    vanish, i.e. &quot;there are no topological L2 harmonic forms on M&quot;. This
    result generalizes the well known vanishing of the Euler characteristic of the
    moduli space of rank 2 stable bundles N of fixed determinant of odd degree over
    ∑. Our proof shows that the vanishing of all intersection numbers of H* cpt(M)
    is given by relations analogous to the Mumford relations in the cohomology ring
    of N.
acknowledgement: "First of all I would like to thank my supervisor Nigel Hitchin for
  suggesting Problem 1, and for his help and \r\n encouragement. I am grateful to
  Michael Thaddeus for his inspiring paper [Thai], enlightening communications and
  his constant interest in my work. I am also indebted to Manfred Lehn for the idea
  of the proof of Theorem 6.2. I have found\r\nconversations with Michael Atiyah,
  Frances Kirwan and Graeme Segal very stimulating. I thank the Mathematical Institute
  and St. Catherine's College, Oxford for their hospitality during the preparation
  of this work. Finally I thank Trinity College, Cambridge for financial support."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Tamas
  full_name: Hausel, Tamas
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
citation:
  ama: Hausel T. Vanishing of intersection numbers on the moduli space of Higgs bundles.
    <i>Advances in Theoretical and Mathematical Physics</i>. 1998;2(5):1011-1040.
    doi:<a href="https://doi.org/10.4310/ATMP.1998.v2.n5.a3">10.4310/ATMP.1998.v2.n5.a3</a>
  apa: Hausel, T. (1998). Vanishing of intersection numbers on the moduli space of
    Higgs bundles. <i>Advances in Theoretical and Mathematical Physics</i>. International
    Press. <a href="https://doi.org/10.4310/ATMP.1998.v2.n5.a3">https://doi.org/10.4310/ATMP.1998.v2.n5.a3</a>
  chicago: Hausel, Tamás. “Vanishing of Intersection Numbers on the Moduli Space of
    Higgs Bundles.” <i>Advances in Theoretical and Mathematical Physics</i>. International
    Press, 1998. <a href="https://doi.org/10.4310/ATMP.1998.v2.n5.a3">https://doi.org/10.4310/ATMP.1998.v2.n5.a3</a>.
  ieee: T. Hausel, “Vanishing of intersection numbers on the moduli space of Higgs
    bundles,” <i>Advances in Theoretical and Mathematical Physics</i>, vol. 2, no.
    5. International Press, pp. 1011–1040, 1998.
  ista: Hausel T. 1998. Vanishing of intersection numbers on the moduli space of Higgs
    bundles. Advances in Theoretical and Mathematical Physics. 2(5), 1011–1040.
  mla: Hausel, Tamás. “Vanishing of Intersection Numbers on the Moduli Space of Higgs
    Bundles.” <i>Advances in Theoretical and Mathematical Physics</i>, vol. 2, no.
    5, International Press, 1998, pp. 1011–40, doi:<a href="https://doi.org/10.4310/ATMP.1998.v2.n5.a3">10.4310/ATMP.1998.v2.n5.a3</a>.
  short: T. Hausel, Advances in Theoretical and Mathematical Physics 2 (1998) 1011–1040.
date_created: 2018-12-11T11:52:06Z
date_published: 1998-09-01T00:00:00Z
date_updated: 2022-09-01T14:09:49Z
day: '01'
doi: 10.4310/ATMP.1998.v2.n5.a3
extern: '1'
external_id:
  arxiv:
  - math/9805071
intvolume: '         2'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/math/9805071
month: '09'
oa: 1
oa_version: Preprint
page: 1011 - 1040
publication: Advances in Theoretical and Mathematical Physics
publication_identifier:
  issn:
  - 1095-0761
publication_status: published
publisher: International Press
publist_id: '5747'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Vanishing of intersection numbers on the moduli space of Higgs bundles
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 2
year: '1998'
...
---
_id: '11926'
abstract:
- lang: eng
  text: "We present the first polylog-competitive online algorithm for the general
    multicast problem in the throughput model. The ratio of the number of requests
    accepted by the optimum offline alaorithm to the exoected number of reauests accepted
    by our algorithm is O(jlog n + log log M)(log n + log M) log n), where M is the
    number of multicast groups and n is the number of nodes in the nraoh. We show
    that this is close to optimum by presenting-an*R(log nlog M) lower\r\nbound on
    this ratio for anv randomized online algorithm against an oblivious adversary,
    when M is much lar&r than the link capacities. Our lower bound applies even in
    the restricted case where the link capacities are much larger than bandwidth requested
    by a single multicast. We also present a simple proof showing that it is impossible
    to be competitive against an adaptive online adversary. As in the previous online
    routing algorithms, our algorithm uses edge-costs when deciding on which is the
    best path to use. In contrast to the nrevious comnetitive aleorithms in the throughput
    modei, our cost is-not a direct function of the edne load. The new cost definition
    allows us to decouple the effects of routing and admission decisions of different
    multicast groups.  "
article_processing_charge: No
author:
- first_name: Ashish
  full_name: Goel, Ashish
  last_name: Goel
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Serge
  full_name: Plotkin, Serge
  last_name: Plotkin
citation:
  ama: 'Goel A, Henzinger MH, Plotkin S. An online throughput-competitive algorithm
    for multicast routing and admission control. In: <i>9th Annual ACM SIAM Symposium
    on Discrete Algorithms</i>. Society for Industrial and Applied Mathematics; 1998:97-106.'
  apa: 'Goel, A., Henzinger, M. H., &#38; Plotkin, S. (1998). An online throughput-competitive
    algorithm for multicast routing and admission control. In <i>9th Annual ACM SIAM
    Symposium on Discrete Algorithms</i> (pp. 97–106). San Francisco, CA, United States:
    Society for Industrial and Applied Mathematics.'
  chicago: Goel, Ashish, Monika H Henzinger, and Serge Plotkin. “An Online Throughput-Competitive
    Algorithm for Multicast Routing and Admission Control.” In <i>9th Annual ACM SIAM
    Symposium on Discrete Algorithms</i>, 97–106. Society for Industrial and Applied
    Mathematics, 1998.
  ieee: A. Goel, M. H. Henzinger, and S. Plotkin, “An online throughput-competitive
    algorithm for multicast routing and admission control,” in <i>9th Annual ACM SIAM
    Symposium on Discrete Algorithms</i>, San Francisco, CA, United States, 1998,
    pp. 97–106.
  ista: 'Goel A, Henzinger MH, Plotkin S. 1998. An online throughput-competitive algorithm
    for multicast routing and admission control. 9th Annual ACM SIAM Symposium on
    Discrete Algorithms. SODA: Symposium on Discrete Algorithms, 97–106.'
  mla: Goel, Ashish, et al. “An Online Throughput-Competitive Algorithm for Multicast
    Routing and Admission Control.” <i>9th Annual ACM SIAM Symposium on Discrete Algorithms</i>,
    Society for Industrial and Applied Mathematics, 1998, pp. 97–106.
  short: A. Goel, M.H. Henzinger, S. Plotkin, in:, 9th Annual ACM SIAM Symposium on
    Discrete Algorithms, Society for Industrial and Applied Mathematics, 1998, pp.
    97–106.
conference:
  end_date: 1998-01-27
  location: San Francisco, CA, United States
  name: 'SODA: Symposium on Discrete Algorithms'
  start_date: 1998-01-25
date_created: 2022-08-19T06:22:30Z
date_published: 1998-01-01T00:00:00Z
date_updated: 2023-02-21T16:27:22Z
day: '01'
extern: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 97-106
publication: 9th Annual ACM SIAM Symposium on Discrete Algorithms
publication_identifier:
  isbn:
  - '0898714109'
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
related_material:
  record:
  - id: '11763'
    relation: later_version
    status: public
scopus_import: '1'
status: public
title: An online throughput-competitive algorithm for multicast routing and admission
  control
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '1998'
...
---
_id: '3487'
abstract:
- lang: eng
  text: It is widely accepted that individual neurons in the central nervous system
    release only a single fast transmitter. The possibility of corelease of fast neurotransmitters
    was examined by making paired recordings from synaptically connected neurons in
    spinal cord slices. Unitary inhibitory postsynaptic currents generated at interneuron-motoneuron
    synapses consisted of a strychnine-sensitive, glycine receptor-mediated component
    and a bicuculline-sensitive, γ-aminobutyric acid (GABA)(A) receptor-mediated component.
    These results indicate that spinal interneurons release both glycine and GABA
    to activate functionally distinct receptors in their postsynaptic target cells.
    A subset of miniature synaptic currents also showed both components, consistent
    with corelease from individual synaptic vesicles.
acknowledgement: "See comment by Nicoll RA, Malenka RC (1998) Science 281:360-361\r\n"
article_processing_charge: No
article_type: original
author:
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
- first_name: Joseph
  full_name: Bischofberger, Joseph
  last_name: Bischofberger
- first_name: Jürgen
  full_name: Sandkühler, Jürgen
  last_name: Sandkühler
citation:
  ama: Jonas PM, Bischofberger J, Sandkühler J. Corelease of two fast neurotransmitters
    at a central synapse. <i>Science</i>. 1998;281(5375):419-424. doi:<a href="https://doi.org/10.1126/science.281.5375.419">10.1126/science.281.5375.419</a>
  apa: Jonas, P. M., Bischofberger, J., &#38; Sandkühler, J. (1998). Corelease of
    two fast neurotransmitters at a central synapse. <i>Science</i>. American Association
    for the Advancement of Science. <a href="https://doi.org/10.1126/science.281.5375.419">https://doi.org/10.1126/science.281.5375.419</a>
  chicago: Jonas, Peter M, Joseph Bischofberger, and Jürgen Sandkühler. “Corelease
    of Two Fast Neurotransmitters at a Central Synapse.” <i>Science</i>. American
    Association for the Advancement of Science, 1998. <a href="https://doi.org/10.1126/science.281.5375.419">https://doi.org/10.1126/science.281.5375.419</a>.
  ieee: P. M. Jonas, J. Bischofberger, and J. Sandkühler, “Corelease of two fast neurotransmitters
    at a central synapse,” <i>Science</i>, vol. 281, no. 5375. American Association
    for the Advancement of Science, pp. 419–424, 1998.
  ista: Jonas PM, Bischofberger J, Sandkühler J. 1998. Corelease of two fast neurotransmitters
    at a central synapse. Science. 281(5375), 419–424.
  mla: Jonas, Peter M., et al. “Corelease of Two Fast Neurotransmitters at a Central
    Synapse.” <i>Science</i>, vol. 281, no. 5375, American Association for the Advancement
    of Science, 1998, pp. 419–24, doi:<a href="https://doi.org/10.1126/science.281.5375.419">10.1126/science.281.5375.419</a>.
  short: P.M. Jonas, J. Bischofberger, J. Sandkühler, Science 281 (1998) 419–424.
date_created: 2018-12-11T12:03:35Z
date_published: 1998-07-17T00:00:00Z
date_updated: 2022-08-29T14:52:38Z
day: '17'
doi: 10.1126/science.281.5375.419
extern: '1'
external_id:
  pmid:
  - '9665886 '
intvolume: '       281'
issue: '5375'
language:
- iso: eng
month: '07'
oa_version: None
page: 419 - 424
pmid: 1
publication: Science
publication_identifier:
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '2900'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Corelease of two fast neurotransmitters at a central synapse
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 281
year: '1998'
...
---
_id: '3488'
abstract:
- lang: eng
  text: We have examined gating and pharmacological characteristics of somatic K+
    channels in fast-spiking interneurons and regularly spiking principal neurons
    of hippocampal slices. In nucleated patches isolated from basket cells of the
    dentate gyrus, a fast delayed rectifier K+ current component that was highly sensitive
    to tetraethylammonium (TEA) and 4-aminopyridine (4- AP) (half-maximal inhibitory
    concentrations &lt;0.1 mM) predominated, contributing an average of 58% to the
    total K+ current in these cells. By contrast, in pyramidal neurons of the CA1
    region a rapidly inactivating A- type K+ current component that was TEA-resistant
    prevailed, contributing 61% to the total K+ current. Both types of neurons also
    showed small amounts of the K+ current component mainly found in the other type
    of neuron and, in addition, a slow delayed rectifier K+ current component with
    intermediate properties (sow inactivation, intermediate sensitivity to TEA). Single-cell
    RT-PCR analysis of mRNA revealed that Kv3 (Kv3.1, Kv3.2) subunit transcripts were
    expressed in almost all (89%) of the interneurons but only in 17% of the pyramidal
    neurons. In contrast, Kv4 (Kv4.2, Kv4.3) subunit mRNAs were present in 87% of
    pyramidal neurons but only in 55% of interneurons. Selective block of fast delayed
    rectifier K+ channels, presumably assembled from Kv3 subunits, by 4-AP reduced
    substantially the action potential frequency in interneurons. These results indicate
    that the differential expression of Kv3 and Kv4 subunits shapes the action potential
    phenotypes of principal neurons and interneurons in the cortex.
acknowledgement: Supported by German Israeli Foundation Grant I 0352–073.01/94 to
  P.J. and Deutsche Forschungsgemeinschaft Grant Mo 432/3–1 to H.M. We thank Drs.
  L. Y. Jan, D. McKinnon, O. Pongs, L. Salkoff, S. H. Snyder, and J. S. Trimmer for
  providing plasmids, Dr. D. J. Surmeier for sharing unpublished data, and Drs. J.
  Bischofberger and J. R. P. Geiger for critically reading this manuscript. M.M. and
  J.H.S. contributed equally to this work.
article_processing_charge: No
article_type: original
author:
- first_name: Marco
  full_name: Martina, Marco
  last_name: Martina
- first_name: Jobst
  full_name: Schultz, Jobst
  last_name: Schultz
- first_name: Heimo
  full_name: Ehmke, Heimo
  last_name: Ehmke
- first_name: Hannah
  full_name: Monyer, Hannah
  last_name: Monyer
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
citation:
  ama: Martina M, Schultz J, Ehmke H, Monyer H, Jonas PM. Functional and molecular
    differences between voltage-gated K+ channels of fast-spiking interneurons and
    pyramidal neurons of rat hippocampus. <i>Journal of Neuroscience</i>. 1998;18(20):8111-8125.
    doi:<a href="https://doi.org/10.1523/JNEUROSCI.18-20-08111.1998">10.1523/JNEUROSCI.18-20-08111.1998</a>
  apa: Martina, M., Schultz, J., Ehmke, H., Monyer, H., &#38; Jonas, P. M. (1998).
    Functional and molecular differences between voltage-gated K+ channels of fast-spiking
    interneurons and pyramidal neurons of rat hippocampus. <i>Journal of Neuroscience</i>.
    Society for Neuroscience. <a href="https://doi.org/10.1523/JNEUROSCI.18-20-08111.1998">https://doi.org/10.1523/JNEUROSCI.18-20-08111.1998</a>
  chicago: Martina, Marco, Jobst Schultz, Heimo Ehmke, Hannah Monyer, and Peter M
    Jonas. “Functional and Molecular Differences between Voltage-Gated K+ Channels
    of Fast-Spiking Interneurons and Pyramidal Neurons of Rat Hippocampus.” <i>Journal
    of Neuroscience</i>. Society for Neuroscience, 1998. <a href="https://doi.org/10.1523/JNEUROSCI.18-20-08111.1998">https://doi.org/10.1523/JNEUROSCI.18-20-08111.1998</a>.
  ieee: M. Martina, J. Schultz, H. Ehmke, H. Monyer, and P. M. Jonas, “Functional
    and molecular differences between voltage-gated K+ channels of fast-spiking interneurons
    and pyramidal neurons of rat hippocampus,” <i>Journal of Neuroscience</i>, vol.
    18, no. 20. Society for Neuroscience, pp. 8111–8125, 1998.
  ista: Martina M, Schultz J, Ehmke H, Monyer H, Jonas PM. 1998. Functional and molecular
    differences between voltage-gated K+ channels of fast-spiking interneurons and
    pyramidal neurons of rat hippocampus. Journal of Neuroscience. 18(20), 8111–8125.
  mla: Martina, Marco, et al. “Functional and Molecular Differences between Voltage-Gated
    K+ Channels of Fast-Spiking Interneurons and Pyramidal Neurons of Rat Hippocampus.”
    <i>Journal of Neuroscience</i>, vol. 18, no. 20, Society for Neuroscience, 1998,
    pp. 8111–25, doi:<a href="https://doi.org/10.1523/JNEUROSCI.18-20-08111.1998">10.1523/JNEUROSCI.18-20-08111.1998</a>.
  short: M. Martina, J. Schultz, H. Ehmke, H. Monyer, P.M. Jonas, Journal of Neuroscience
    18 (1998) 8111–8125.
date_created: 2018-12-11T12:03:35Z
date_published: 1998-10-15T00:00:00Z
date_updated: 2022-08-29T14:20:39Z
day: '15'
doi: 10.1523/JNEUROSCI.18-20-08111.1998
extern: '1'
external_id:
  pmid:
  - '9763458'
intvolume: '        18'
issue: '20'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6792860/
month: '10'
oa: 1
oa_version: None
page: 8111 - 8125
pmid: 1
publication: Journal of Neuroscience
publication_identifier:
  issn:
  - 0270-6474
publication_status: published
publisher: Society for Neuroscience
publist_id: '2899'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Functional and molecular differences between voltage-gated K+ channels of fast-spiking
  interneurons and pyramidal neurons of rat hippocampus
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 18
year: '1998'
...
---
_id: '3506'
abstract:
- lang: eng
  text: A method of geometric morphing between a first object having a first shape
    and a second object having a second shape. The method includes the steps of generating
    a first Delaunay complex corresponding to the first shape and a second Delaunay
    complex corresponding to the second shape and generating a plurality of intermediary
    Delaunay complexes defined by a continuous family of mixed shapes corresponding
    to a mixing of the first shape and the second shape. The method further includes
    the steps of constructing a first skin corresponding to the first Delaunay complex
    and a second skin corresponding to the second Delaunay complex and constructing
    a plurality of intermediary skins corresponding to the plurality of intermediary
    Delaunay complexes. The first skin, second skin and plurality of intermediary
    skins may be visually displayed on an output device.
applicant:
- Raindrop Geomagic, Inc.
article_processing_charge: No
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Ping
  full_name: Fu, Ping
  last_name: Fu
citation:
  ama: Edelsbrunner H, Fu P. Apparatus and method for geometric morphing. 1998.
  apa: Edelsbrunner, H., &#38; Fu, P. (1998). Apparatus and method for geometric morphing.
  chicago: Edelsbrunner, Herbert, and Ping Fu. “Apparatus and Method for Geometric
    Morphing,” 1998.
  ieee: H. Edelsbrunner and P. Fu, “Apparatus and method for geometric morphing.”
    1998.
  ista: Edelsbrunner H, Fu P. 1998. Apparatus and method for geometric morphing.
  mla: Edelsbrunner, Herbert, and Ping Fu. <i>Apparatus and Method for Geometric Morphing</i>.
    1998.
  short: H. Edelsbrunner, P. Fu, (1998).
date_created: 2018-12-11T12:03:41Z
date_published: 1998-12-15T00:00:00Z
date_updated: 2022-01-05T15:16:35Z
day: '15'
extern: '1'
ipc: G06T13/20 ; G06T2210/44
ipn: US5850229A
main_file_link:
- open_access: '1'
  url: https://patents.google.com/patent/US5850229A
month: '12'
oa: 1
oa_version: Published Version
publication_date: 1998-12-15
publist_id: '2881'
status: public
title: Apparatus and method for geometric morphing
type: patent
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '1998'
...
---
_id: '3521'
abstract:
- lang: eng
  text: Spike transmission probability between pyramidal cells and interneurons in
    the CA1 pyramidal layer was investigated in the behaving rat by the simultaneous
    recording of neuronal ensembles. Population synchrony was strongest during sharp
    wave (SPW) bursts. However, the increase was three times larger for pyramidal
    cells than for interneurons. The contribution of single pyramidal cells to the
    discharge of interneurons was often large (up to 0.6 probability), as assessed
    by the presence of significant (&lt;3 ms) peaks in the cross-correlogram. Complex-spike
    bursts were more effective than single spikes. Single cell contribution was higher
    between SPW bursts than during SPWs or theta activity. Hence, single pyramidal
    cells can reliably discharge interneurons, and the probability of spike transmission
    is behavior dependent.
acknowledgement: We thank C. King, R. Miles, M. Recce, and the anonymous reviewers
  for their constructive comments on the manuscript. This work was supported by the
  National Institutes of Health (NS34994, MH54671 1P41RR09754), the Human Frontier
  Science Program, and the Whitehall Foundation.
article_processing_charge: No
article_type: original
author:
- first_name: Jozsef L
  full_name: Csicsvari, Jozsef L
  id: 3FA14672-F248-11E8-B48F-1D18A9856A87
  last_name: Csicsvari
  orcid: 0000-0002-5193-4036
- first_name: Hajima
  full_name: Hirase, Hajima
  last_name: Hirase
- first_name: András
  full_name: Czurkó, András
  last_name: Czurkó
- first_name: György
  full_name: Buzsáki, György
  last_name: Buzsáki
citation:
  ama: 'Csicsvari JL, Hirase H, Czurkó A, Buzsáki G. Reliability and state dependence
    of pyramidal cell-interneuron synapses in the hippocampus: an ensemble approach
    in the behaving rat. <i>Neuron</i>. 1998;21(1):179-189. doi:<a href="https://doi.org/10.1016/S0896-6273(00)80525-5">10.1016/S0896-6273(00)80525-5</a>'
  apa: 'Csicsvari, J. L., Hirase, H., Czurkó, A., &#38; Buzsáki, G. (1998). Reliability
    and state dependence of pyramidal cell-interneuron synapses in the hippocampus:
    an ensemble approach in the behaving rat. <i>Neuron</i>. Elsevier. <a href="https://doi.org/10.1016/S0896-6273(00)80525-5">https://doi.org/10.1016/S0896-6273(00)80525-5</a>'
  chicago: 'Csicsvari, Jozsef L, Hajima Hirase, András Czurkó, and György Buzsáki.
    “Reliability and State Dependence of Pyramidal Cell-Interneuron Synapses in the
    Hippocampus: An Ensemble Approach in the Behaving Rat.” <i>Neuron</i>. Elsevier,
    1998. <a href="https://doi.org/10.1016/S0896-6273(00)80525-5">https://doi.org/10.1016/S0896-6273(00)80525-5</a>.'
  ieee: 'J. L. Csicsvari, H. Hirase, A. Czurkó, and G. Buzsáki, “Reliability and state
    dependence of pyramidal cell-interneuron synapses in the hippocampus: an ensemble
    approach in the behaving rat,” <i>Neuron</i>, vol. 21, no. 1. Elsevier, pp. 179–189,
    1998.'
  ista: 'Csicsvari JL, Hirase H, Czurkó A, Buzsáki G. 1998. Reliability and state
    dependence of pyramidal cell-interneuron synapses in the hippocampus: an ensemble
    approach in the behaving rat. Neuron. 21(1), 179–189.'
  mla: 'Csicsvari, Jozsef L., et al. “Reliability and State Dependence of Pyramidal
    Cell-Interneuron Synapses in the Hippocampus: An Ensemble Approach in the Behaving
    Rat.” <i>Neuron</i>, vol. 21, no. 1, Elsevier, 1998, pp. 179–89, doi:<a href="https://doi.org/10.1016/S0896-6273(00)80525-5">10.1016/S0896-6273(00)80525-5</a>.'
  short: J.L. Csicsvari, H. Hirase, A. Czurkó, G. Buzsáki, Neuron 21 (1998) 179–189.
date_created: 2018-12-11T12:03:46Z
date_published: 1998-07-01T00:00:00Z
date_updated: 2022-08-29T14:03:55Z
day: '01'
doi: 10.1016/S0896-6273(00)80525-5
extern: '1'
external_id:
  pmid:
  - '9697862 '
intvolume: '        21'
issue: '1'
language:
- iso: eng
month: '07'
oa_version: None
page: 179 - 189
pmid: 1
publication: Neuron
publication_identifier:
  issn:
  - 0896-6273
publication_status: published
publisher: Elsevier
publist_id: '2865'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Reliability and state dependence of pyramidal cell-interneuron synapses in
  the hippocampus: an ensemble approach in the behaving rat'
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 21
year: '1998'
...
---
_id: '3525'
author:
- first_name: Zoltán
  full_name: Nádasdy, Zoltán
  last_name: Nádasdy
- first_name: Jozsef L
  full_name: Jozsef Csicsvari
  id: 3FA14672-F248-11E8-B48F-1D18A9856A87
  last_name: Csicsvari
  orcid: 0000-0002-5193-4036
- first_name: Hajima
  full_name: Hirase, Hajima
  last_name: Hirase
- first_name: András
  full_name: Czurkó, András
  last_name: Czurkó
- first_name: György
  full_name: Buzsáki, György
  last_name: Buzsáki
citation:
  ama: Nádasdy Z, Csicsvari JL, Hirase H, Czurkó A, Buzsáki G. Persistence and temporal
    compression of spike sequences during fast field oscillation in the hippocampus.
    <i>European Journal of Neuroscience</i>. 1998;10(Suppl. 10):9409-9409.
  apa: Nádasdy, Z., Csicsvari, J. L., Hirase, H., Czurkó, A., &#38; Buzsáki, G. (1998).
    Persistence and temporal compression of spike sequences during fast field oscillation
    in the hippocampus. <i>European Journal of Neuroscience</i>. Wiley-Blackwell.
  chicago: Nádasdy, Zoltán, Jozsef L Csicsvari, Hajima Hirase, András Czurkó, and
    György Buzsáki. “Persistence and Temporal Compression of Spike Sequences during
    Fast Field Oscillation in the Hippocampus.” <i>European Journal of Neuroscience</i>.
    Wiley-Blackwell, 1998.
  ieee: Z. Nádasdy, J. L. Csicsvari, H. Hirase, A. Czurkó, and G. Buzsáki, “Persistence
    and temporal compression of spike sequences during fast field oscillation in the
    hippocampus,” <i>European Journal of Neuroscience</i>, vol. 10, no. Suppl. 10.
    Wiley-Blackwell, pp. 9409–9409, 1998.
  ista: Nádasdy Z, Csicsvari JL, Hirase H, Czurkó A, Buzsáki G. 1998. Persistence
    and temporal compression of spike sequences during fast field oscillation in the
    hippocampus. European Journal of Neuroscience. 10(Suppl. 10), 9409–9409.
  mla: Nádasdy, Zoltán, et al. “Persistence and Temporal Compression of Spike Sequences
    during Fast Field Oscillation in the Hippocampus.” <i>European Journal of Neuroscience</i>,
    vol. 10, no. Suppl. 10, Wiley-Blackwell, 1998, pp. 9409–9409.
  short: Z. Nádasdy, J.L. Csicsvari, H. Hirase, A. Czurkó, G. Buzsáki, European Journal
    of Neuroscience 10 (1998) 9409–9409.
date_created: 2018-12-11T12:03:47Z
date_published: 1998-06-01T00:00:00Z
date_updated: 2021-01-12T07:44:04Z
day: '01'
extern: 1
intvolume: '        10'
issue: Suppl. 10
month: '06'
page: 9409 - 9409
publication: European Journal of Neuroscience
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2861'
quality_controlled: 0
status: public
title: Persistence and temporal compression of spike sequences during fast field oscillation
  in the hippocampus
type: journal_article
volume: 10
year: '1998'
...
---
_id: '3527'
author:
- first_name: Jozsef L
  full_name: Jozsef Csicsvari
  id: 3FA14672-F248-11E8-B48F-1D18A9856A87
  last_name: Csicsvari
  orcid: 0000-0002-5193-4036
- first_name: András
  full_name: Czurkó, András
  last_name: Czurkó
- first_name: Hajima
  full_name: Hirase, Hajima
  last_name: Hirase
- first_name: György
  full_name: Buzsáki, György
  last_name: Buzsáki
citation:
  ama: Csicsvari JL, Czurkó A, Hirase H, Buzsáki G. Monosynaptic interactions between
    CA1 Pyramidal cells and interneuron in the behaving rat. <i>European Journal of
    Neuroscience</i>. 1998;10(Suppl. 10):2553-2553.
  apa: Csicsvari, J. L., Czurkó, A., Hirase, H., &#38; Buzsáki, G. (1998). Monosynaptic
    interactions between CA1 Pyramidal cells and interneuron in the behaving rat.
    <i>European Journal of Neuroscience</i>. Wiley-Blackwell.
  chicago: Csicsvari, Jozsef L, András Czurkó, Hajima Hirase, and György Buzsáki.
    “Monosynaptic Interactions between CA1 Pyramidal Cells and Interneuron in the
    Behaving Rat.” <i>European Journal of Neuroscience</i>. Wiley-Blackwell, 1998.
  ieee: J. L. Csicsvari, A. Czurkó, H. Hirase, and G. Buzsáki, “Monosynaptic interactions
    between CA1 Pyramidal cells and interneuron in the behaving rat,” <i>European
    Journal of Neuroscience</i>, vol. 10, no. Suppl. 10. Wiley-Blackwell, pp. 2553–2553,
    1998.
  ista: Csicsvari JL, Czurkó A, Hirase H, Buzsáki G. 1998. Monosynaptic interactions
    between CA1 Pyramidal cells and interneuron in the behaving rat. European Journal
    of Neuroscience. 10(Suppl. 10), 2553–2553.
  mla: Csicsvari, Jozsef L., et al. “Monosynaptic Interactions between CA1 Pyramidal
    Cells and Interneuron in the Behaving Rat.” <i>European Journal of Neuroscience</i>,
    vol. 10, no. Suppl. 10, Wiley-Blackwell, 1998, pp. 2553–2553.
  short: J.L. Csicsvari, A. Czurkó, H. Hirase, G. Buzsáki, European Journal of Neuroscience
    10 (1998) 2553–2553.
date_created: 2018-12-11T12:03:48Z
date_published: 1998-06-01T00:00:00Z
date_updated: 2021-01-12T07:44:05Z
day: '01'
extern: 1
intvolume: '        10'
issue: Suppl. 10
month: '06'
page: 2553 - 2553
publication: European Journal of Neuroscience
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2858'
quality_controlled: 0
status: public
title: Monosynaptic interactions between CA1 Pyramidal cells and interneuron in the
  behaving rat
type: journal_article
volume: 10
year: '1998'
...
---
_id: '3535'
author:
- first_name: Hajima
  full_name: Hirase, Hajima
  last_name: Hirase
- first_name: András
  full_name: Czurkó, András
  last_name: Czurkó
- first_name: Jozsef L
  full_name: Jozsef Csicsvari
  id: 3FA14672-F248-11E8-B48F-1D18A9856A87
  last_name: Csicsvari
  orcid: 0000-0002-5193-4036
- first_name: György
  full_name: Buzsáki, György
  last_name: Buzsáki
citation:
  ama: 'Hirase H, Czurkó A, Csicsvari JL, Buzsáki G. Hippocampal pyramidal neutrons
    “space-clamped” in a running wheel task: Place cells or path integrators? <i>European
    Journal of Neuroscience</i>. 1998;10(Suppl. 10):9932-9932.'
  apa: 'Hirase, H., Czurkó, A., Csicsvari, J. L., &#38; Buzsáki, G. (1998). Hippocampal
    pyramidal neutrons “space-clamped” in a running wheel task: Place cells or path
    integrators? <i>European Journal of Neuroscience</i>. Wiley-Blackwell.'
  chicago: 'Hirase, Hajima, András Czurkó, Jozsef L Csicsvari, and György Buzsáki.
    “Hippocampal Pyramidal Neutrons ‘Space-Clamped’ in a Running Wheel Task: Place
    Cells or Path Integrators?” <i>European Journal of Neuroscience</i>. Wiley-Blackwell,
    1998.'
  ieee: 'H. Hirase, A. Czurkó, J. L. Csicsvari, and G. Buzsáki, “Hippocampal pyramidal
    neutrons ‘space-clamped’ in a running wheel task: Place cells or path integrators?,”
    <i>European Journal of Neuroscience</i>, vol. 10, no. Suppl. 10. Wiley-Blackwell,
    pp. 9932–9932, 1998.'
  ista: 'Hirase H, Czurkó A, Csicsvari JL, Buzsáki G. 1998. Hippocampal pyramidal
    neutrons “space-clamped” in a running wheel task: Place cells or path integrators?
    European Journal of Neuroscience. 10(Suppl. 10), 9932–9932.'
  mla: 'Hirase, Hajima, et al. “Hippocampal Pyramidal Neutrons ‘Space-Clamped’ in
    a Running Wheel Task: Place Cells or Path Integrators?” <i>European Journal of
    Neuroscience</i>, vol. 10, no. Suppl. 10, Wiley-Blackwell, 1998, pp. 9932–9932.'
  short: H. Hirase, A. Czurkó, J.L. Csicsvari, G. Buzsáki, European Journal of Neuroscience
    10 (1998) 9932–9932.
date_created: 2018-12-11T12:03:50Z
date_published: 1998-01-01T00:00:00Z
date_updated: 2021-01-12T07:44:08Z
day: '01'
extern: 1
intvolume: '        10'
issue: Suppl. 10
month: '01'
page: 9932 - 9932
publication: European Journal of Neuroscience
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2850'
quality_controlled: 0
status: public
title: 'Hippocampal pyramidal neutrons “space-clamped” in a running wheel task: Place
  cells or path integrators?'
type: journal_article
volume: 10
year: '1998'
...
---
_id: '3570'
abstract:
- lang: eng
  text: Visualization of high-dimensional or large geometric data sets is inherently
    difficult, so we experiment with the use of audio to display the shape and connectivity
    of these data sets. Sonification is used as both an addition to and a substitution
    for the visual display. We describe a new algorithm called wave traversal that
    provides a necessary intermediate step to sonification of the data; it produces
    an ordered sequence of subsets, called waves, that allows us to map the data to
    time. In this paper we focus in detail on the mathematics of wave traversal, in
    particular, how wave traversal can be used as a discrete Morse function.
article_processing_charge: No
author:
- first_name: Ulrike
  full_name: Axen, Ulrike
  last_name: Axen
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
citation:
  ama: 'Axen U, Edelsbrunner H. Auditory Morse analysis of triangulated manifolds.
    In: <i>Mathematical Visualization</i>. Springer; 1998:223-236. doi:<a href="https://doi.org/10.1007/978-3-662-03567-2_17">10.1007/978-3-662-03567-2_17</a>'
  apa: Axen, U., &#38; Edelsbrunner, H. (1998). Auditory Morse analysis of triangulated
    manifolds. In <i>Mathematical Visualization</i> (pp. 223–236). Springer. <a href="https://doi.org/10.1007/978-3-662-03567-2_17">https://doi.org/10.1007/978-3-662-03567-2_17</a>
  chicago: Axen, Ulrike, and Herbert Edelsbrunner. “Auditory Morse Analysis of Triangulated
    Manifolds.” In <i>Mathematical Visualization</i>, 223–36. Springer, 1998. <a href="https://doi.org/10.1007/978-3-662-03567-2_17">https://doi.org/10.1007/978-3-662-03567-2_17</a>.
  ieee: U. Axen and H. Edelsbrunner, “Auditory Morse analysis of triangulated manifolds,”
    in <i>Mathematical Visualization</i>, Springer, 1998, pp. 223–236.
  ista: 'Axen U, Edelsbrunner H. 1998.Auditory Morse analysis of triangulated manifolds.
    In: Mathematical Visualization. , 223–236.'
  mla: Axen, Ulrike, and Herbert Edelsbrunner. “Auditory Morse Analysis of Triangulated
    Manifolds.” <i>Mathematical Visualization</i>, Springer, 1998, pp. 223–36, doi:<a
    href="https://doi.org/10.1007/978-3-662-03567-2_17">10.1007/978-3-662-03567-2_17</a>.
  short: U. Axen, H. Edelsbrunner, in:, Mathematical Visualization, Springer, 1998,
    pp. 223–236.
date_created: 2018-12-11T12:04:01Z
date_published: 1998-10-20T00:00:00Z
date_updated: 2022-08-29T12:47:32Z
day: '20'
doi: 10.1007/978-3-662-03567-2_17
extern: '1'
language:
- iso: eng
month: '10'
oa_version: None
page: 223 - 236
publication: Mathematical Visualization
publication_identifier:
  isbn:
  - '9783662035672'
publication_status: published
publisher: Springer
publist_id: '2815'
quality_controlled: '1'
status: public
title: Auditory Morse analysis of triangulated manifolds
type: book_chapter
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
year: '1998'
...
---
_id: '3627'
abstract:
- lang: eng
  text: When a favourable mutation sweeps to fixation, those genes initially linked
    to it increase in frequency; on average, this reduces diversity in the surrounding
    region of the genome. In the first analysis of this 'hitch-hiking' effect, Maynard-Smith
    and Haigh followed the increase of the neutral allele that chanced to be associated
    with the new mutation in the first generation, and assumed that the subsequent
    increase was deterministic. Later analyses, based on either coalescence arguments,
    or on diffusion equations for the mean and variance of allele frequency, have
    also made one or both of these assumptions. In the early generations, stochastic
    fluctuations in the frequency of the selected allele, and coalescence of neutral
    lineages, can be accounted for correctly by following relationships between genes
    conditional on the number of copies of the favourable allele. This analysis shows
    that the hitch-hiking effect is increased because an allele that is destined to
    fix tends to increase more rapidly than exponentially. However, the identity generated
    by the selective sweep has the same form as in previous work, h[r/s] (2 Ns)(-2r/s),
    where h[r/s] tends to 1 with tight linkage. This analysis is extended to samples
    of many genes; then, genes may trace back to several families of lineages, each
    related through a common ancestor early in the selective sweep. Simulations show
    that the number and sizes of these families can (in principle) be used to make
    separate estimates of r/s and Ns.
acknowledgement: S. P. Otto kindly supplied the simulation results shown in Fig. 1.
  I would like to thank B. Charlesworth, A. Etheridge and S. P. Otto for their comments
  on the manuscript. This work was supported by the Biotechnology and Biological Sciences
  Research Council, and by the Darwin Trust of Edinburgh.
article_processing_charge: No
article_type: original
author:
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: Barton NH. The effect of hitch-hiking on neutral genealogies. <i>Genetical
    Research</i>. 1998;72(2):123-133. doi:<a href="https://doi.org/10.1017/S0016672398003462">10.1017/S0016672398003462</a>
  apa: Barton, N. H. (1998). The effect of hitch-hiking on neutral genealogies. <i>Genetical
    Research</i>. Cambridge University Press. <a href="https://doi.org/10.1017/S0016672398003462">https://doi.org/10.1017/S0016672398003462</a>
  chicago: Barton, Nicholas H. “The Effect of Hitch-Hiking on Neutral Genealogies.”
    <i>Genetical Research</i>. Cambridge University Press, 1998. <a href="https://doi.org/10.1017/S0016672398003462">https://doi.org/10.1017/S0016672398003462</a>.
  ieee: N. H. Barton, “The effect of hitch-hiking on neutral genealogies,” <i>Genetical
    Research</i>, vol. 72, no. 2. Cambridge University Press, pp. 123–133, 1998.
  ista: Barton NH. 1998. The effect of hitch-hiking on neutral genealogies. Genetical
    Research. 72(2), 123–133.
  mla: Barton, Nicholas H. “The Effect of Hitch-Hiking on Neutral Genealogies.” <i>Genetical
    Research</i>, vol. 72, no. 2, Cambridge University Press, 1998, pp. 123–33, doi:<a
    href="https://doi.org/10.1017/S0016672398003462">10.1017/S0016672398003462</a>.
  short: N.H. Barton, Genetical Research 72 (1998) 123–133.
date_created: 2018-12-11T12:04:19Z
date_published: 1998-10-01T00:00:00Z
date_updated: 2022-08-29T12:42:44Z
day: '01'
doi: 10.1017/S0016672398003462
extern: '1'
intvolume: '        72'
issue: '2'
language:
- iso: eng
month: '10'
oa_version: None
page: 123 - 133
publication: Genetical Research
publication_identifier:
  issn:
  - 0016-6723
publication_status: published
publisher: Cambridge University Press
publist_id: '2756'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The effect of hitch-hiking on neutral genealogies
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 72
year: '1998'
...
---
_id: '3628'
abstract:
- lang: eng
  text: 'Determining the way in which deleterious mutations interact in their effects
    on fitness is crucial to numerous areas in population genetics and evolutionary
    biology. For example, if each additional mutation leads to a greater decrease
    in log fitness than the last (synergistic epistasis), then the evolution of sex
    and recombination may be favored to facilitate the elimination of deleterious
    mutations. However, there is a severe shortage of relevant data. Three relatively
    simple experimental methods to test for epistasis between deleterious mutations
    in haploid species have recently been proposed. These methods involve crossing
    individuals and examining the mean and/or skew in log fitness of the offspring
    and parents. The main aim of this paper is to formalize these methods, and determine
    the most effective way in which tests for epistasis could be carried out. We show
    that only one of these methods is likely to give useful results: crossing individuals
    that have very different numbers of deleterious mutations, and comparing the mean
    log fitness of the parents with that of their offspring. We also reconsider experimental
    data collected on Chlamydomonas moewussi using two of the three methods. Finally,
    we suggest how the test could be applied to diploid species.'
acknowledgement: We thank BRIAN  CHARLESWORTH, ANDREW  CLARK, LAURENCE  HURST, PETER  KEIGHTLEY,
  ALEXEY  KONDRASHOV, CURT  LIVELY, MARGARET  MACKINNON, KATRINA  LYTHGOE, SALLY  OTTO,
  ANDREW  READ and ARJAN DE  VISSER for useful discussion and comments on the manuscript.
  This work was supported by the Biotechnology and Biological Sciences Research Council.
article_processing_charge: No
article_type: original
author:
- first_name: Stuart
  full_name: West, Stuart
  last_name: West
- first_name: Andrew
  full_name: Peters, Andrew
  last_name: Peters
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: West S, Peters A, Barton NH. Testing for epistasis between deleterious mutations.
    <i>Genetics</i>. 1998;149(1):435-444. doi:<a href="https://doi.org/10.1093/genetics/149.1.435">10.1093/genetics/149.1.435</a>
  apa: West, S., Peters, A., &#38; Barton, N. H. (1998). Testing for epistasis between
    deleterious mutations. <i>Genetics</i>. Genetics Society of America. <a href="https://doi.org/10.1093/genetics/149.1.435">https://doi.org/10.1093/genetics/149.1.435</a>
  chicago: West, Stuart, Andrew Peters, and Nicholas H Barton. “Testing for Epistasis
    between Deleterious Mutations.” <i>Genetics</i>. Genetics Society of America,
    1998. <a href="https://doi.org/10.1093/genetics/149.1.435">https://doi.org/10.1093/genetics/149.1.435</a>.
  ieee: S. West, A. Peters, and N. H. Barton, “Testing for epistasis between deleterious
    mutations,” <i>Genetics</i>, vol. 149, no. 1. Genetics Society of America, pp.
    435–444, 1998.
  ista: West S, Peters A, Barton NH. 1998. Testing for epistasis between deleterious
    mutations. Genetics. 149(1), 435–444.
  mla: West, Stuart, et al. “Testing for Epistasis between Deleterious Mutations.”
    <i>Genetics</i>, vol. 149, no. 1, Genetics Society of America, 1998, pp. 435–44,
    doi:<a href="https://doi.org/10.1093/genetics/149.1.435">10.1093/genetics/149.1.435</a>.
  short: S. West, A. Peters, N.H. Barton, Genetics 149 (1998) 435–444.
date_created: 2018-12-11T12:04:19Z
date_published: 1998-05-01T00:00:00Z
date_updated: 2022-08-29T08:53:09Z
day: '01'
doi: 10.1093/genetics/149.1.435
extern: '1'
external_id:
  pmid:
  - '9584115'
intvolume: '       149'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://academic.oup.com/genetics/article/149/1/435/6034229
month: '05'
oa: 1
oa_version: None
page: 435 - 444
pmid: 1
publication: Genetics
publication_identifier:
  issn:
  - 0016-6731
publication_status: published
publisher: Genetics Society of America
publist_id: '2755'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Testing for epistasis between deleterious mutations
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 149
year: '1998'
...
---
_id: '3629'
abstract:
- lang: eng
  text: 'This paper demonstrates the effect of habitat heterogeneity and a habitat
    preference on the genetic structure of a hybrid zone between the toads Bombina
    bombina and B. variegata (Anura: Discoglossidae); 1613 toads from 85 sites across
    a transect near Pešćenica, Croatia, were scored for five unlinked diagnostic allozyme
    markers. These were found to be largely concordant. Aside from minor systematic
    deviations, there was little variance in allele frequency among loci within sites.
    Yet the allele frequencies did not follow a smooth cline, but formed a mosaic
    in the center, such that neighboring sites could differ markedly in their enzyme
    score. A detailed ecological survey revealed a correlation between this pattern
    and habitat. In keeping with the typical breeding sites of the parental taxa,
    B. bombina-like hybrids were found more often in ponds, whereas B. variegata-like
    hybrids were more common in puddles. In addition, there was significant heterozygote
    deficit (FIS) and strong linkage disequilibrium (R), both of which were stronger
    on the B. bombina side of the transect, and stronger in puddles than ponds. Mark-recapture
    data showed: (1) that the animals disperse beyond the scale of the habitat pattern;
    (2) frequent turn-over of individuals within sites; and (3) nonrandom movement
    between two sites of different habitat type. We conclude that an active habitat
    preference must contribute to the observed association between marker alleles
    and habitat. As a consequence, there is incomplete mixing of the two gene pools,
    which could explain the high level of FIS and R. The asymmetry in these parameters
    may reflect asymmetry in the preference or in the distribution of habitats across
    the zone. We discuss the implications of habitat preference for the dynamics of
    hybrid zones.'
acknowledgement: This work was supported by a NERC studentshipto CJM, by NERC grants
  GR3/9353, GR3/8002, andGR9/1909A to NHB,  and by KBN grant 193/P04/95/09to JMS.
  We are grateful to J. W.Arntzen, L.Kruuk, R. G.Harrison, J. W.Sites, and an anonymous
  reviewer for their comments on the manuscript.
article_processing_charge: No
article_type: original
author:
- first_name: Catriona
  full_name: Maccallum, Catriona
  last_name: Maccallum
- first_name: Beate
  full_name: Nürnberger, Beate
  last_name: Nürnberger
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
- first_name: Jacek
  full_name: Szymura, Jacek
  last_name: Szymura
citation:
  ama: Maccallum C, Nürnberger B, Barton NH, Szymura J. Habitat preference in the
    Bombina hybrid zone in Croatia. <i>Evolution</i>. 1998;52(1):227-239. doi:<a href="https://doi.org/10.1111/j.1558-5646.1998.tb05156.x">10.1111/j.1558-5646.1998.tb05156.x</a>
  apa: Maccallum, C., Nürnberger, B., Barton, N. H., &#38; Szymura, J. (1998). Habitat
    preference in the Bombina hybrid zone in Croatia. <i>Evolution</i>. Wiley-Blackwell.
    <a href="https://doi.org/10.1111/j.1558-5646.1998.tb05156.x">https://doi.org/10.1111/j.1558-5646.1998.tb05156.x</a>
  chicago: Maccallum, Catriona, Beate Nürnberger, Nicholas H Barton, and Jacek Szymura.
    “Habitat Preference in the Bombina Hybrid Zone in Croatia.” <i>Evolution</i>.
    Wiley-Blackwell, 1998. <a href="https://doi.org/10.1111/j.1558-5646.1998.tb05156.x">https://doi.org/10.1111/j.1558-5646.1998.tb05156.x</a>.
  ieee: C. Maccallum, B. Nürnberger, N. H. Barton, and J. Szymura, “Habitat preference
    in the Bombina hybrid zone in Croatia,” <i>Evolution</i>, vol. 52, no. 1. Wiley-Blackwell,
    pp. 227–239, 1998.
  ista: Maccallum C, Nürnberger B, Barton NH, Szymura J. 1998. Habitat preference
    in the Bombina hybrid zone in Croatia. Evolution. 52(1), 227–239.
  mla: Maccallum, Catriona, et al. “Habitat Preference in the Bombina Hybrid Zone
    in Croatia.” <i>Evolution</i>, vol. 52, no. 1, Wiley-Blackwell, 1998, pp. 227–39,
    doi:<a href="https://doi.org/10.1111/j.1558-5646.1998.tb05156.x">10.1111/j.1558-5646.1998.tb05156.x</a>.
  short: C. Maccallum, B. Nürnberger, N.H. Barton, J. Szymura, Evolution 52 (1998)
    227–239.
date_created: 2018-12-11T12:04:20Z
date_published: 1998-02-01T00:00:00Z
date_updated: 2022-08-26T11:00:17Z
day: '01'
doi: 10.1111/j.1558-5646.1998.tb05156.x
extern: '1'
external_id:
  pmid:
  - '28568140'
intvolume: '        52'
issue: '1'
language:
- iso: eng
month: '02'
oa_version: None
page: 227 - 239
pmid: 1
publication: Evolution
publication_identifier:
  issn:
  - 0014-3820
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2754'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Habitat preference in the Bombina hybrid zone in Croatia
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 52
year: '1998'
...
---
_id: '3926'
abstract:
- lang: eng
  text: 'Two components of sexual selection in the lesser wax moth, Achroia grisella,
    are clearly defined: females choose males based on characters of their ultrasonic
    advertisement signals, and males display agonistic behaviour patterns in contests
    over signalling stations. We conducted a series of laboratory trials to determine
    whether successes in these two sexual selection arenas were related. Our trials
    showed that winners in contests over signalling stations were characterized by
    earlier initiation of both signalling and aggression. These characteristics may
    indicate higher levels of ‘motivation,’ but it is unclear whether this level is
    a fixed trait. There was no relationship, however, between any measure of a male''s
    attractiveness to females and his success in winning competition trials. Thus,
    inter- and intra-sexual selection may be acting on different, uncorrelated traits
    in A. grisella.'
acknowledgement: We thank Robert MINCKI-EY for collecting A. griseh from infested
  honeybee colonies and Yikweon J,4M;. Feng-You JIA, James MCLLOUGH and Kelly WILLAMS
  for indispensable laboratory assistaiice. Analyses of the ultrasonic advertisement
  signals was made possible by digital signal-processing programs written by Tom PETERS
  and Ric ROGERO (both of the University of Kansas Instrumentation Development Laboratory)
  and Martin CREMER. Marc BRANHAM and Klaus-Gerhardt HELLER offered valuable discussion
  during the project and Yikweon JAG, Klaus REINHOLD and several anonymous referees
  provided critical  reviews of the manuscript. Financial support was provided by
  US National Science Foundation grant IBN-9407162.
article_processing_charge: No
article_type: original
author:
- first_name: Sylvia
  full_name: Cremer, Sylvia
  id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
  last_name: Cremer
  orcid: 0000-0002-2193-3868
- first_name: Michael
  full_name: Greenfield, Michael
  last_name: Greenfield
citation:
  ama: 'Cremer S, Greenfield M. Partitioning the components of sexual selection: attractiveness
    and agonistic behaviour in male wax moths, Achroia grisella (Lepidoptera, Pyralidae).
    <i>Ethology</i>. 1998;104(1):1-9. doi:<a href="https://doi.org/10.1111/j.1439-0310.1998.tb00025.x">10.1111/j.1439-0310.1998.tb00025.x</a>'
  apa: 'Cremer, S., &#38; Greenfield, M. (1998). Partitioning the components of sexual
    selection: attractiveness and agonistic behaviour in male wax moths, Achroia grisella
    (Lepidoptera, Pyralidae). <i>Ethology</i>. Wiley-Blackwell. <a href="https://doi.org/10.1111/j.1439-0310.1998.tb00025.x">https://doi.org/10.1111/j.1439-0310.1998.tb00025.x</a>'
  chicago: 'Cremer, Sylvia, and Michael Greenfield. “Partitioning the Components of
    Sexual Selection: Attractiveness and Agonistic Behaviour in Male Wax Moths, Achroia
    Grisella (Lepidoptera, Pyralidae).” <i>Ethology</i>. Wiley-Blackwell, 1998. <a
    href="https://doi.org/10.1111/j.1439-0310.1998.tb00025.x">https://doi.org/10.1111/j.1439-0310.1998.tb00025.x</a>.'
  ieee: 'S. Cremer and M. Greenfield, “Partitioning the components of sexual selection:
    attractiveness and agonistic behaviour in male wax moths, Achroia grisella (Lepidoptera,
    Pyralidae),” <i>Ethology</i>, vol. 104, no. 1. Wiley-Blackwell, pp. 1–9, 1998.'
  ista: 'Cremer S, Greenfield M. 1998. Partitioning the components of sexual selection:
    attractiveness and agonistic behaviour in male wax moths, Achroia grisella (Lepidoptera,
    Pyralidae). Ethology. 104(1), 1–9.'
  mla: 'Cremer, Sylvia, and Michael Greenfield. “Partitioning the Components of Sexual
    Selection: Attractiveness and Agonistic Behaviour in Male Wax Moths, Achroia Grisella
    (Lepidoptera, Pyralidae).” <i>Ethology</i>, vol. 104, no. 1, Wiley-Blackwell,
    1998, pp. 1–9, doi:<a href="https://doi.org/10.1111/j.1439-0310.1998.tb00025.x">10.1111/j.1439-0310.1998.tb00025.x</a>.'
  short: S. Cremer, M. Greenfield, Ethology 104 (1998) 1–9.
date_created: 2018-12-11T12:05:56Z
date_published: 1998-01-01T00:00:00Z
date_updated: 2022-08-26T09:11:08Z
day: '01'
doi: 10.1111/j.1439-0310.1998.tb00025.x
extern: '1'
intvolume: '       104'
issue: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 1 - 9
publication: Ethology
publication_identifier:
  issn:
  - 0044-3573
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2227'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Partitioning the components of sexual selection: attractiveness and agonistic
  behaviour in male wax moths, Achroia grisella (Lepidoptera, Pyralidae)'
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 104
year: '1998'
...
---
_id: '4011'
abstract:
- lang: eng
  text: The size and shape of macromolecules such as proteins and nucleic acids play
    an important role in their functions. Prior efforts to quantify these properties
    have been based on various discretization or tessellation procedures involving
    analytical or numerical computations. In this article, we present an analytically
    exact method for computing the metric properties of macromolecules based on the
    alpha shape theory. This method uses the duality between alpha complex and the
    weighted Voronoi decomposition of a molecule. We describe the intuitive ideas
    and concepts behind the alpha shape theory and the algorithm for computing areas
    and volumes of macromolecules. We apply our method to compute areas and volumes
    of a number of protein systems. We also discuss several difficulties commonly
    encountered in molecular shape computations and outline methods to overcome these
    problems. (C) 1998 Wiley-Liss, Inc.
acknowledgement: We thank Michael Facello for the torus area formula and suggestion
  regarding computation of MS model from  SA model. We thank Nataraj Akkiraju, Patrick
  Moran, and Marcus Wagner for interesting discussionson the topic of this article
  and for help in the generationof two- and three-dimensional illustrations. We thank
  NSF Meta Center Allocation  for providing computational resources. The software
  VOLBL is available at:http://alpha.ncsa.uiuc.edu/alpha.
article_processing_charge: No
article_type: original
author:
- first_name: Jie
  full_name: Liang, Jie
  last_name: Liang
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Ping
  full_name: Fu, Ping
  last_name: Fu
- first_name: Pamidighantam
  full_name: Sudhakar, Pamidighantam
  last_name: Sudhakar
- first_name: Shankar
  full_name: Subramaniam, Shankar
  last_name: Subramaniam
citation:
  ama: 'Liang J, Edelsbrunner H, Fu P, Sudhakar P, Subramaniam S. Analytical shape
    computation of macromolecules: I. molecular area and volume through alpha shape.
    <i>Proteins: Structure, Function and Bioinformatics</i>. 1998;33(1):1-17. doi:<a
    href="https://doi.org/10.1002/(SICI)1097-0134(19981001)33:1&#38;lt;1::AID-PROT1&#38;gt;3.0.CO;2-O">10.1002/(SICI)1097-0134(19981001)33:1&#38;lt;1::AID-PROT1&#38;gt;3.0.CO;2-O</a>'
  apa: 'Liang, J., Edelsbrunner, H., Fu, P., Sudhakar, P., &#38; Subramaniam, S. (1998).
    Analytical shape computation of macromolecules: I. molecular area and volume through
    alpha shape. <i>Proteins: Structure, Function and Bioinformatics</i>. Wiley-Blackwell.
    <a href="https://doi.org/10.1002/(SICI)1097-0134(19981001)33:1&#38;lt;1::AID-PROT1&#38;gt;3.0.CO;2-O">https://doi.org/10.1002/(SICI)1097-0134(19981001)33:1&#38;lt;1::AID-PROT1&#38;gt;3.0.CO;2-O</a>'
  chicago: 'Liang, Jie, Herbert Edelsbrunner, Ping Fu, Pamidighantam Sudhakar, and
    Shankar Subramaniam. “Analytical Shape Computation of Macromolecules: I. Molecular
    Area and Volume through Alpha Shape.” <i>Proteins: Structure, Function and Bioinformatics</i>.
    Wiley-Blackwell, 1998. <a href="https://doi.org/10.1002/(SICI)1097-0134(19981001)33:1&#38;lt;1::AID-PROT1&#38;gt;3.0.CO;2-O">https://doi.org/10.1002/(SICI)1097-0134(19981001)33:1&#38;lt;1::AID-PROT1&#38;gt;3.0.CO;2-O</a>.'
  ieee: 'J. Liang, H. Edelsbrunner, P. Fu, P. Sudhakar, and S. Subramaniam, “Analytical
    shape computation of macromolecules: I. molecular area and volume through alpha
    shape,” <i>Proteins: Structure, Function and Bioinformatics</i>, vol. 33, no.
    1. Wiley-Blackwell, pp. 1–17, 1998.'
  ista: 'Liang J, Edelsbrunner H, Fu P, Sudhakar P, Subramaniam S. 1998. Analytical
    shape computation of macromolecules: I. molecular area and volume through alpha
    shape. Proteins: Structure, Function and Bioinformatics. 33(1), 1–17.'
  mla: 'Liang, Jie, et al. “Analytical Shape Computation of Macromolecules: I. Molecular
    Area and Volume through Alpha Shape.” <i>Proteins: Structure, Function and Bioinformatics</i>,
    vol. 33, no. 1, Wiley-Blackwell, 1998, pp. 1–17, doi:<a href="https://doi.org/10.1002/(SICI)1097-0134(19981001)33:1&#38;lt;1::AID-PROT1&#38;gt;3.0.CO;2-O">10.1002/(SICI)1097-0134(19981001)33:1&#38;lt;1::AID-PROT1&#38;gt;3.0.CO;2-O</a>.'
  short: 'J. Liang, H. Edelsbrunner, P. Fu, P. Sudhakar, S. Subramaniam, Proteins:
    Structure, Function and Bioinformatics 33 (1998) 1–17.'
date_created: 2018-12-11T12:06:25Z
date_published: 1998-10-01T00:00:00Z
date_updated: 2022-08-25T13:32:59Z
day: '01'
doi: 10.1002/(SICI)1097-0134(19981001)33:1&lt;1::AID-PROT1&gt;3.0.CO;2-O
extern: '1'
intvolume: '        33'
issue: '1'
language:
- iso: eng
month: '10'
oa_version: None
page: 1 - 17
publication: 'Proteins: Structure, Function and Bioinformatics'
publication_identifier:
  issn:
  - 0887-3585
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2112'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Analytical shape computation of macromolecules: I. molecular area and volume
  through alpha shape'
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 33
year: '1998'
...
---
_id: '4012'
abstract:
- lang: eng
  text: The structures of proteins are well-packed, yet they contain numerous cavities
    which play key roles in accommodating small molecules, or enabling conformational
    changes. From high-resolution structures it is possible to identify these cavities.
    We have developed a precise algorithm based on alpha shapes for measuring space-filling-based
    molecular models (such as van der Waals, solvent accessible, and molecular surface
    descriptions). We applied this method for accurate computation of the surface
    area and volume of cavities in several proteins. In addition, all of the atoms/residues
    Lining the cavities are identified, We use this method to study the structure
    and the stability of proteins, as well as to locate cavities that could contain
    structural water molecules in the proton transport pathway in the membrane protein
    bacteriorhodopsin.
acknowledgement: The software for constructing weighted Delaunay complexes and the
  alpha shape filters was written by Ernst Mücke and Michael Facello. We thank them
  forcreating reliable and robust software so that wecan build on their results. The
  authors thank NSF Meta Center Allocation for providing computational resources.
  The software VOLBL is part of the standard distribution of the alpha shapes software,
  andis available at http://alpha.ncsa.uiuc.edu/alpha.
article_processing_charge: No
article_type: original
author:
- first_name: Jie
  full_name: Liang, Jie
  last_name: Liang
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Ping
  full_name: Fu, Ping
  last_name: Fu
- first_name: Pamidighantam
  full_name: Sudhakar, Pamidighantam
  last_name: Sudhakar
- first_name: Shankar
  full_name: Subramaniam, Shankar
  last_name: Subramaniam
citation:
  ama: 'Liang J, Edelsbrunner H, Fu P, Sudhakar P, Subramaniam S. Analytical shape
    computation of macromolecules: II. Inaccessible cavities in proteins. <i>Proteins:
    Structure, Function and Bioinformatics</i>. 1998;33(1):18-29. doi:<a href="https://doi.org/10.1002/(SICI)1097-0134(19981001)33:1&#38;lt;18::AID-PROT2&#38;gt;3.0.CO;2-H">10.1002/(SICI)1097-0134(19981001)33:1&#38;lt;18::AID-PROT2&#38;gt;3.0.CO;2-H</a>'
  apa: 'Liang, J., Edelsbrunner, H., Fu, P., Sudhakar, P., &#38; Subramaniam, S. (1998).
    Analytical shape computation of macromolecules: II. Inaccessible cavities in proteins.
    <i>Proteins: Structure, Function and Bioinformatics</i>. Wiley-Blackwell. <a href="https://doi.org/10.1002/(SICI)1097-0134(19981001)33:1&#38;lt;18::AID-PROT2&#38;gt;3.0.CO;2-H">https://doi.org/10.1002/(SICI)1097-0134(19981001)33:1&#38;lt;18::AID-PROT2&#38;gt;3.0.CO;2-H</a>'
  chicago: 'Liang, Jie, Herbert Edelsbrunner, Ping Fu, Pamidighantam Sudhakar, and
    Shankar Subramaniam. “Analytical Shape Computation of Macromolecules: II. Inaccessible
    Cavities in Proteins.” <i>Proteins: Structure, Function and Bioinformatics</i>.
    Wiley-Blackwell, 1998. <a href="https://doi.org/10.1002/(SICI)1097-0134(19981001)33:1&#38;lt;18::AID-PROT2&#38;gt;3.0.CO;2-H">https://doi.org/10.1002/(SICI)1097-0134(19981001)33:1&#38;lt;18::AID-PROT2&#38;gt;3.0.CO;2-H</a>.'
  ieee: 'J. Liang, H. Edelsbrunner, P. Fu, P. Sudhakar, and S. Subramaniam, “Analytical
    shape computation of macromolecules: II. Inaccessible cavities in proteins,” <i>Proteins:
    Structure, Function and Bioinformatics</i>, vol. 33, no. 1. Wiley-Blackwell, pp.
    18–29, 1998.'
  ista: 'Liang J, Edelsbrunner H, Fu P, Sudhakar P, Subramaniam S. 1998. Analytical
    shape computation of macromolecules: II. Inaccessible cavities in proteins. Proteins:
    Structure, Function and Bioinformatics. 33(1), 18–29.'
  mla: 'Liang, Jie, et al. “Analytical Shape Computation of Macromolecules: II. Inaccessible
    Cavities in Proteins.” <i>Proteins: Structure, Function and Bioinformatics</i>,
    vol. 33, no. 1, Wiley-Blackwell, 1998, pp. 18–29, doi:<a href="https://doi.org/10.1002/(SICI)1097-0134(19981001)33:1&#38;lt;18::AID-PROT2&#38;gt;3.0.CO;2-H">10.1002/(SICI)1097-0134(19981001)33:1&#38;lt;18::AID-PROT2&#38;gt;3.0.CO;2-H</a>.'
  short: 'J. Liang, H. Edelsbrunner, P. Fu, P. Sudhakar, S. Subramaniam, Proteins:
    Structure, Function and Bioinformatics 33 (1998) 18–29.'
date_created: 2018-12-11T12:06:26Z
date_published: 1998-10-01T00:00:00Z
date_updated: 2022-08-25T13:35:41Z
day: '01'
doi: 10.1002/(SICI)1097-0134(19981001)33:1&lt;18::AID-PROT2&gt;3.0.CO;2-H
extern: '1'
intvolume: '        33'
issue: '1'
language:
- iso: eng
month: '10'
oa_version: None
page: 18 - 29
publication: 'Proteins: Structure, Function and Bioinformatics'
publication_identifier:
  issn:
  - 0887-3585
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2113'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Analytical shape computation of macromolecules: II. Inaccessible cavities
  in proteins'
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 33
year: '1998'
...
---
_id: '4013'
abstract:
- lang: eng
  text: The shape of a protein is important for its functions, This includes the location
    and size of identifiable regions in its complement space. We formally define pockets
    as regions in the complement with limited accessibility from the outside. Pockets
    can be efficiently constructed by an algorithm based on alpha complexes. The algorithm
    is implemented and applied to proteins with known three-dimensional conformations.
    1998 Published by Elsevier Science B.V. All rights reserved.
acknowledgement: 'The authors thank Ping Fu and Ernst Miicke for their contributions
  to the alpha shapes software in which the pockets software is embedded. '
article_processing_charge: No
article_type: original
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Michael
  full_name: Facello, Michael
  last_name: Facello
- first_name: Jie
  full_name: Liang, Jie
  last_name: Liang
citation:
  ama: Edelsbrunner H, Facello M, Liang J. On the definition and the construction
    of pockets in macromolecules. <i>Discrete Applied Mathematics</i>. 1998;88(1-3):83-102.
    doi:<a href="https://doi.org/10.1016/S0166-218X(98)00067-5">10.1016/S0166-218X(98)00067-5</a>
  apa: Edelsbrunner, H., Facello, M., &#38; Liang, J. (1998). On the definition and
    the construction of pockets in macromolecules. <i>Discrete Applied Mathematics</i>.
    Elsevier. <a href="https://doi.org/10.1016/S0166-218X(98)00067-5">https://doi.org/10.1016/S0166-218X(98)00067-5</a>
  chicago: Edelsbrunner, Herbert, Michael Facello, and Jie Liang. “On the Definition
    and the Construction of Pockets in Macromolecules.” <i>Discrete Applied Mathematics</i>.
    Elsevier, 1998. <a href="https://doi.org/10.1016/S0166-218X(98)00067-5">https://doi.org/10.1016/S0166-218X(98)00067-5</a>.
  ieee: H. Edelsbrunner, M. Facello, and J. Liang, “On the definition and the construction
    of pockets in macromolecules,” <i>Discrete Applied Mathematics</i>, vol. 88, no.
    1–3. Elsevier, pp. 83–102, 1998.
  ista: Edelsbrunner H, Facello M, Liang J. 1998. On the definition and the construction
    of pockets in macromolecules. Discrete Applied Mathematics. 88(1–3), 83–102.
  mla: Edelsbrunner, Herbert, et al. “On the Definition and the Construction of Pockets
    in Macromolecules.” <i>Discrete Applied Mathematics</i>, vol. 88, no. 1–3, Elsevier,
    1998, pp. 83–102, doi:<a href="https://doi.org/10.1016/S0166-218X(98)00067-5">10.1016/S0166-218X(98)00067-5</a>.
  short: H. Edelsbrunner, M. Facello, J. Liang, Discrete Applied Mathematics 88 (1998)
    83–102.
date_created: 2018-12-11T12:06:26Z
date_published: 1998-11-09T00:00:00Z
date_updated: 2022-08-25T15:06:30Z
day: '09'
doi: 10.1016/S0166-218X(98)00067-5
extern: '1'
external_id:
  pmid:
  - '9390238'
intvolume: '        88'
issue: 1-3
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.sciencedirect.com/science/article/pii/S0166218X98000675?via%3Dihub
month: '11'
oa: 1
oa_version: Published Version
page: 83 - 102
pmid: 1
publication: Discrete Applied Mathematics
publication_identifier:
  issn:
  - 0166-218X
publication_status: published
publisher: Elsevier
publist_id: '2114'
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the definition and the construction of pockets in macromolecules
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 88
year: '1998'
...
---
_id: '4015'
abstract:
- lang: eng
  text: The reconstruction of a shape or surface from a finite set of points is a
    practically significant and theoretically challenging problem. This paper presents
    a unified view of algorithmic solutions proposed in the computer science literature
    that are based on the Delaunay complex of the points.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
citation:
  ama: 'Edelsbrunner H. Shape reconstruction with Delaunay complex. In: <i>Proceedingsof
    the 3rd Latin American Symposium on Theoretical Informatics</i>. Vol 1380. Springer;
    1998:119-132. doi:<a href="https://doi.org/10.1007/BFb0054315">10.1007/BFb0054315</a>'
  apa: 'Edelsbrunner, H. (1998). Shape reconstruction with Delaunay complex. In <i>Proceedingsof
    the 3rd Latin American Symposium on Theoretical Informatics</i> (Vol. 1380, pp.
    119–132). Campinas, Brazil: Springer. <a href="https://doi.org/10.1007/BFb0054315">https://doi.org/10.1007/BFb0054315</a>'
  chicago: Edelsbrunner, Herbert. “Shape Reconstruction with Delaunay Complex.” In
    <i>Proceedingsof the 3rd Latin American Symposium on Theoretical Informatics</i>,
    1380:119–32. Springer, 1998. <a href="https://doi.org/10.1007/BFb0054315">https://doi.org/10.1007/BFb0054315</a>.
  ieee: H. Edelsbrunner, “Shape reconstruction with Delaunay complex,” in <i>Proceedingsof
    the 3rd Latin American Symposium on Theoretical Informatics</i>, Campinas, Brazil,
    1998, vol. 1380, pp. 119–132.
  ista: 'Edelsbrunner H. 1998. Shape reconstruction with Delaunay complex. Proceedingsof
    the 3rd Latin American Symposium on Theoretical Informatics. LATIN: Latin American
    Symposium on Theoretical Informatics , LNCS, vol. 1380, 119–132.'
  mla: Edelsbrunner, Herbert. “Shape Reconstruction with Delaunay Complex.” <i>Proceedingsof
    the 3rd Latin American Symposium on Theoretical Informatics</i>, vol. 1380, Springer,
    1998, pp. 119–32, doi:<a href="https://doi.org/10.1007/BFb0054315">10.1007/BFb0054315</a>.
  short: H. Edelsbrunner, in:, Proceedingsof the 3rd Latin American Symposium on Theoretical
    Informatics, Springer, 1998, pp. 119–132.
conference:
  end_date: 1998-04-24
  location: Campinas, Brazil
  name: 'LATIN: Latin American Symposium on Theoretical Informatics '
  start_date: 1998-04-20
date_created: 2018-12-11T12:06:27Z
date_published: 1998-03-25T00:00:00Z
date_updated: 2022-08-25T12:22:10Z
day: '25'
doi: 10.1007/BFb0054315
extern: '1'
intvolume: '      1380'
language:
- iso: eng
month: '03'
oa_version: None
page: 119 - 132
publication: Proceedingsof the 3rd Latin American Symposium on Theoretical Informatics
publication_identifier:
  isbn:
  - '9783540642756'
publication_status: published
publisher: Springer
publist_id: '2109'
quality_controlled: '1'
status: public
title: Shape reconstruction with Delaunay complex
type: conference
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 1380
year: '1998'
...
---
_id: '4016'
abstract:
- lang: eng
  text: Geomagic Wrap™ is a commercially available software for reconstructing shapes
    and surfaces from 3D scanning data. The data can be any arbitrary finite point
    set in 3D, and there are no requirements on local density or organization in slices
    etc. The software contains components for surface reconstruction, improvement,
    and analysis, and it supports a variety of input and output formats that make
    it compatible with scanning hardware and CAD and graphics software.
alternative_title:
- SPIE
article_processing_charge: No
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Michael
  full_name: Facello, Michael
  last_name: Facello
- first_name: Ping
  full_name: Fu, Ping
  last_name: Fu
- first_name: Jiang
  full_name: Qian, Jiang
  last_name: Qian
- first_name: Dmitry
  full_name: Nekhayev, Dmitry
  last_name: Nekhayev
citation:
  ama: 'Edelsbrunner H, Facello M, Fu P, Qian J, Nekhayev D. Wrapping 3D scanning
    data. In: Vol 3313. SPIE; 1998:148-158. doi:<a href="https://doi.org/10.1117/12.302448">10.1117/12.302448</a>'
  apa: Edelsbrunner, H., Facello, M., Fu, P., Qian, J., &#38; Nekhayev, D. (1998).
    Wrapping 3D scanning data (Vol. 3313, pp. 148–158). Presented at the Three-Dimensional
    Image Capture and Applications, SPIE. <a href="https://doi.org/10.1117/12.302448">https://doi.org/10.1117/12.302448</a>
  chicago: Edelsbrunner, Herbert, Michael Facello, Ping Fu, Jiang Qian, and Dmitry
    Nekhayev. “Wrapping 3D Scanning Data,” 3313:148–58. SPIE, 1998. <a href="https://doi.org/10.1117/12.302448">https://doi.org/10.1117/12.302448</a>.
  ieee: H. Edelsbrunner, M. Facello, P. Fu, J. Qian, and D. Nekhayev, “Wrapping 3D
    scanning data,” presented at the Three-Dimensional Image Capture and Applications,
    1998, vol. 3313, pp. 148–158.
  ista: Edelsbrunner H, Facello M, Fu P, Qian J, Nekhayev D. 1998. Wrapping 3D scanning
    data. Three-Dimensional Image Capture and Applications, SPIE, vol. 3313, 148–158.
  mla: Edelsbrunner, Herbert, et al. <i>Wrapping 3D Scanning Data</i>. Vol. 3313,
    SPIE, 1998, pp. 148–58, doi:<a href="https://doi.org/10.1117/12.302448">10.1117/12.302448</a>.
  short: H. Edelsbrunner, M. Facello, P. Fu, J. Qian, D. Nekhayev, in:, SPIE, 1998,
    pp. 148–158.
conference:
  name: Three-Dimensional Image Capture and Applications
date_created: 2018-12-11T12:06:27Z
date_published: 1998-01-01T00:00:00Z
date_updated: 2022-08-25T12:37:01Z
day: '01'
doi: 10.1117/12.302448
extern: '1'
intvolume: '      3313'
language:
- iso: eng
month: '01'
oa_version: None
page: 148 - 158
publication_status: published
publisher: SPIE
publist_id: '2110'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Wrapping 3D scanning data
type: conference
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 3313
year: '1998'
...
