---
_id: '4615'
abstract:
- lang: eng
  text: We introduce the class of event- recording timed automata (ERA). An event-recording
    automaton contains, for every event a, a clock that records the time of the last
    occurrence of a. The class ERA is, on one hand, expressive enough to model (finite)
    timed transition systems and, on the other hand, determinizable and closed under
    all boolean operations. As a result, the language inclusion problem is decidable
    for event-recording automata. We present a translation from timed transition systems
    to event-recording automata, which leads to an algorithm for checking if two timed
    transition systems have the same set of timed behaviors. We also consider event-predicting
    timed automata (EPA), which contain clocks that predict the time of the next occurrence
    of an event. The class of event-clock automata (ECA), which contain both event-recording
    and event-predicting clocks, is a suitable specification language for real-time
    properties. We provide an algorithm for checking if a timed automaton meets a
    specification that is given as an event-clock automaton.
acknowledgement: "Supported in part by the Office of Naval Research under contract
  N00014-91-J-1219, the National Science Foundation under grant CCR-8701103, and by
  DARPA/NSF under grant CCR-9014363.\r\nSupported in part by the National Science
  Foundation under grant CCR-9200794 and by the United States Air Force Office of
  Scientific Research under contract F49620-93-1-0056."
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Rajeev
  full_name: Alur, Rajeev
  last_name: Alur
- first_name: Limor
  full_name: Fix, Limor
  last_name: Fix
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
citation:
  ama: 'Alur R, Fix L, Henzinger TA. A determinizable class of timed automata. In:
    <i>International Conference on Computer Aided Verification</i>. Vol 818. Springer;
    1994:1-13. doi:<a href="https://doi.org/10.1007/3-540-58179-0_39">10.1007/3-540-58179-0_39</a>'
  apa: 'Alur, R., Fix, L., &#38; Henzinger, T. A. (1994). A determinizable class of
    timed automata. In <i>International Conference on Computer Aided Verification</i>
    (Vol. 818, pp. 1–13). Stanford, CA, United States of America: Springer. <a href="https://doi.org/10.1007/3-540-58179-0_39">https://doi.org/10.1007/3-540-58179-0_39</a>'
  chicago: Alur, Rajeev, Limor Fix, and Thomas A Henzinger. “A Determinizable Class
    of Timed Automata.” In <i>International Conference on Computer Aided Verification</i>,
    818:1–13. Springer, 1994. <a href="https://doi.org/10.1007/3-540-58179-0_39">https://doi.org/10.1007/3-540-58179-0_39</a>.
  ieee: R. Alur, L. Fix, and T. A. Henzinger, “A determinizable class of timed automata,”
    in <i>International Conference on Computer Aided Verification</i>, Stanford, CA,
    United States of America, 1994, vol. 818, pp. 1–13.
  ista: 'Alur R, Fix L, Henzinger TA. 1994. A determinizable class of timed automata.
    International Conference on Computer Aided Verification. CAV: Computer Aided Verification,
    LNCS, vol. 818, 1–13.'
  mla: Alur, Rajeev, et al. “A Determinizable Class of Timed Automata.” <i>International
    Conference on Computer Aided Verification</i>, vol. 818, Springer, 1994, pp. 1–13,
    doi:<a href="https://doi.org/10.1007/3-540-58179-0_39">10.1007/3-540-58179-0_39</a>.
  short: R. Alur, L. Fix, T.A. Henzinger, in:, International Conference on Computer
    Aided Verification, Springer, 1994, pp. 1–13.
conference:
  end_date: 1994-06-23
  location: Stanford, CA, United States of America
  name: 'CAV: Computer Aided Verification'
  start_date: 1994-06-21
date_created: 2018-12-11T12:09:46Z
date_published: 1994-01-01T00:00:00Z
date_updated: 2022-06-01T14:37:25Z
day: '01'
doi: 10.1007/3-540-58179-0_39
extern: '1'
intvolume: '       818'
language:
- iso: eng
main_file_link:
- url: https://link.springer.com/chapter/10.1007/3-540-58179-0_39
month: '01'
oa_version: None
page: 1 - 13
publication: International Conference on Computer Aided Verification
publication_identifier:
  isbn:
  - '9783540484691'
publication_status: published
publisher: Springer
publist_id: '92'
quality_controlled: '1'
scopus_import: '1'
status: public
title: A determinizable class of timed automata
type: conference
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 818
year: '1994'
...
---
_id: '4617'
abstract:
- lang: eng
  text: 'We extend the timed-automaton model for real-time systems [AD90] to a formal
    model for hybrid systems: while the continuous variables of a timed automaton
    are clocks that measure time, the continuous variables of a hybrid system are
    governed by arbitrary differential equations. We then adopt the verification methodology
    for timed automata [ACD90, ACD+92, HNSY92] to analyze hybrid systems: while the
    verification problem is decidable for timed automata, we obtain semidecision procedures
    for the class of hybrid systems whose continuous variables change in a piecewise
    linear fashion. '
alternative_title:
- LNCIS
article_processing_charge: No
author:
- first_name: Rajeev
  full_name: Alur, Rajeev
  last_name: Alur
- first_name: Costas
  full_name: Courcoubetis, Costas
  last_name: Courcoubetis
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Pei
  full_name: Ho, Pei
  last_name: Ho
- first_name: Xavier
  full_name: Nicollin, Xavier
  last_name: Nicollin
- first_name: Alfredo
  full_name: Olivero, Alfredo
  last_name: Olivero
- first_name: Joseph
  full_name: Sifakis, Joseph
  last_name: Sifakis
- first_name: Sergio
  full_name: Yovine, Sergio
  last_name: Yovine
citation:
  ama: 'Alur R, Courcoubetis C, Henzinger TA, et al. The algorithmic analysis of hybrid
    systems. In: <i>11th International Conference on Analysis and Optimization of
    Systems Discrete Event Systems</i>. Vol 199. Springer; 1994:331-351. doi:<a href="https://doi.org/10.1007/BFb0033565">10.1007/BFb0033565</a>'
  apa: 'Alur, R., Courcoubetis, C., Henzinger, T. A., Ho, P., Nicollin, X., Olivero,
    A., … Yovine, S. (1994). The algorithmic analysis of hybrid systems. In <i>11th
    International Conference on Analysis and Optimization of Systems Discrete Event
    Systems</i> (Vol. 199, pp. 331–351). Sophia-Antipolis, France: Springer. <a href="https://doi.org/10.1007/BFb0033565">https://doi.org/10.1007/BFb0033565</a>'
  chicago: Alur, Rajeev, Costas Courcoubetis, Thomas A Henzinger, Pei Ho, Xavier Nicollin,
    Alfredo Olivero, Joseph Sifakis, and Sergio Yovine. “The Algorithmic Analysis
    of Hybrid Systems.” In <i>11th International Conference on Analysis and Optimization
    of Systems Discrete Event Systems</i>, 199:331–51. Springer, 1994. <a href="https://doi.org/10.1007/BFb0033565">https://doi.org/10.1007/BFb0033565</a>.
  ieee: R. Alur <i>et al.</i>, “The algorithmic analysis of hybrid systems,” in <i>11th
    International Conference on Analysis and Optimization of Systems Discrete Event
    Systems</i>, Sophia-Antipolis, France, 1994, vol. 199, pp. 331–351.
  ista: 'Alur R, Courcoubetis C, Henzinger TA, Ho P, Nicollin X, Olivero A, Sifakis
    J, Yovine S. 1994. The algorithmic analysis of hybrid systems. 11th International
    Conference on Analysis and Optimization of Systems Discrete Event Systems. ICAOS:
    Analysis and Optimization of Systems - Discrete-Event Systems, LNCIS, vol. 199,
    331–351.'
  mla: Alur, Rajeev, et al. “The Algorithmic Analysis of Hybrid Systems.” <i>11th
    International Conference on Analysis and Optimization of Systems Discrete Event
    Systems</i>, vol. 199, Springer, 1994, pp. 331–51, doi:<a href="https://doi.org/10.1007/BFb0033565">10.1007/BFb0033565</a>.
  short: R. Alur, C. Courcoubetis, T.A. Henzinger, P. Ho, X. Nicollin, A. Olivero,
    J. Sifakis, S. Yovine, in:, 11th International Conference on Analysis and Optimization
    of Systems Discrete Event Systems, Springer, 1994, pp. 331–351.
conference:
  end_date: 1994-06-17
  location: Sophia-Antipolis, France
  name: 'ICAOS: Analysis and Optimization of Systems - Discrete-Event Systems'
  start_date: 1994-06-15
date_created: 2018-12-11T12:09:46Z
date_published: 1994-01-01T00:00:00Z
date_updated: 2022-06-01T14:14:31Z
day: '01'
doi: 10.1007/BFb0033565
extern: '1'
intvolume: '       199'
language:
- iso: eng
main_file_link:
- url: https://link.springer.com/chapter/10.1007/BFb0033565
month: '01'
oa_version: None
page: 331 - 351
publication: 11th International Conference on Analysis and Optimization of Systems
  Discrete Event Systems
publication_identifier:
  isbn:
  - 978-3-540-19896-3
publication_status: published
publisher: Springer
publist_id: '91'
quality_controlled: '1'
status: public
title: The algorithmic analysis of hybrid systems
type: conference
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 199
year: '1994'
...
---
_id: '6167'
abstract:
- lang: eng
  text: The tra-1 gene is the terminal regulator in the sex determination pathway
    in C. elegans, directing all aspects of somatic sexual differentiation. Recessive
    loss-of-function (lf) mutations in tra-1 masculinize XX animals (normally somatically
    female), while dominant gain-of-function mutations feminize XO animals (normally
    male). Most tra-1 (lf) mutations can be fitted into a simple allelic series of
    somatic masculinization, but a small number of lf alleles do not fit into this
    series. Here we show that three of these mutations are associated with DNA rearrangements
    5' to the coding region. One allele is an inversion that may be subject to a position
    effect. We also report the isolation of a new class of tra-1 alleles that are
    responsive to mutations in the smg system of RNA surveillance. We show that two
    of these express RNAs of aberrant size. We suggest that the smg-sensitive mutations
    may identify a carboxy-terminal domain required for negative regulation of tra-1
    activity.
author:
- first_name: David
  full_name: Zarkower, David
  last_name: Zarkower
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
- first_name: Rachel
  full_name: Aronoff, Rachel
  last_name: Aronoff
- first_name: Jonathan
  full_name: Hodgkin, Jonathan
  last_name: Hodgkin
citation:
  ama: Zarkower D, de Bono M, Aronoff R, Hodgkin J. Regulatory rearrangements and
    smg-sensitive allels of the C. elegans sex-determining gene tra-1. <i>Developmental
    Genetics</i>. 1994;15(3):240-250. doi:<a href="https://doi.org/10.1002/dvg.1020150306">10.1002/dvg.1020150306</a>
  apa: Zarkower, D., de Bono, M., Aronoff, R., &#38; Hodgkin, J. (1994). Regulatory
    rearrangements and smg-sensitive allels of the C. elegans sex-determining gene
    tra-1. <i>Developmental Genetics</i>. Wiley. <a href="https://doi.org/10.1002/dvg.1020150306">https://doi.org/10.1002/dvg.1020150306</a>
  chicago: Zarkower, David, Mario de Bono, Rachel Aronoff, and Jonathan Hodgkin. “Regulatory
    Rearrangements and Smg-Sensitive Allels of the C. Elegans Sex-Determining Gene
    Tra-1.” <i>Developmental Genetics</i>. Wiley, 1994. <a href="https://doi.org/10.1002/dvg.1020150306">https://doi.org/10.1002/dvg.1020150306</a>.
  ieee: D. Zarkower, M. de Bono, R. Aronoff, and J. Hodgkin, “Regulatory rearrangements
    and smg-sensitive allels of the C. elegans sex-determining gene tra-1,” <i>Developmental
    Genetics</i>, vol. 15, no. 3. Wiley, pp. 240–250, 1994.
  ista: Zarkower D, de Bono M, Aronoff R, Hodgkin J. 1994. Regulatory rearrangements
    and smg-sensitive allels of the C. elegans sex-determining gene tra-1. Developmental
    Genetics. 15(3), 240–250.
  mla: Zarkower, David, et al. “Regulatory Rearrangements and Smg-Sensitive Allels
    of the C. Elegans Sex-Determining Gene Tra-1.” <i>Developmental Genetics</i>,
    vol. 15, no. 3, Wiley, 1994, pp. 240–50, doi:<a href="https://doi.org/10.1002/dvg.1020150306">10.1002/dvg.1020150306</a>.
  short: D. Zarkower, M. de Bono, R. Aronoff, J. Hodgkin, Developmental Genetics 15
    (1994) 240–250.
date_created: 2019-03-22T08:38:41Z
date_published: 1994-01-13T00:00:00Z
date_updated: 2021-01-12T08:06:30Z
day: '13'
doi: 10.1002/dvg.1020150306
extern: '1'
external_id:
  pmid:
  - '7520378'
intvolume: '        15'
issue: '3'
language:
- iso: eng
month: '01'
oa_version: None
page: 240-250
pmid: 1
publication: Developmental Genetics
publication_identifier:
  issn:
  - 0192-253X
  - 1520-6408
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Regulatory rearrangements and smg-sensitive allels of the C. elegans sex-determining
  gene tra-1
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '1994'
...
---
_id: '11857'
abstract:
- lang: eng
  text: Two edges e/sub 1/ and e/sub 2/ of an undirected graph are cycle-equivalent
    iff all cycles that contain e/sub 1/ also contain e/sub 2/, i.e., iff e/sub 1/
    and e/sub 2/ are a cut-edge pair. The cycle-equivalence classes of the control-flow
    graph are used in optimizing compilers to speed up existing control-flow and data-flow
    algorithms. While the cycle-equivalence classes can be computed in linear time,
    we present the first fully dynamic algorithm for maintaining the cycle-equivalence
    relation. In an n-node graph our data structure executes an edge insertion or
    deletion in O(/spl radic/n log n) time and answers the query whether two given
    edges are cycle-equivalent in O(log/sup 2/ n) time. We also present an algorithm
    for plane graphs with O(log n) update and query time and for planar graphs with
    O(log n) insertion time and O(log/sup 2/ n) query and deletion time. Additionally,
    we show a lower bound of /spl Omega/(log n/log log n) for the amortized time per
    operation for the dynamic cycle-equivalence problem in the cell probe model.<
    >
article_processing_charge: No
author:
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
citation:
  ama: 'Henzinger MH. Fully dynamic cycle-equivalence in graphs. In: <i>35th Annual
    Symposium on Foundations of Computer Science</i>. Institute of Electrical and
    Electronics Engineers; 1994:744-755. doi:<a href="https://doi.org/10.1109/sfcs.1994.365718">10.1109/sfcs.1994.365718</a>'
  apa: 'Henzinger, M. H. (1994). Fully dynamic cycle-equivalence in graphs. In <i>35th
    Annual Symposium on Foundations of Computer Science</i> (pp. 744–755). Santa Fe,
    NM, United States: Institute of Electrical and Electronics Engineers. <a href="https://doi.org/10.1109/sfcs.1994.365718">https://doi.org/10.1109/sfcs.1994.365718</a>'
  chicago: Henzinger, Monika H. “Fully Dynamic Cycle-Equivalence in Graphs.” In <i>35th
    Annual Symposium on Foundations of Computer Science</i>, 744–55. Institute of
    Electrical and Electronics Engineers, 1994. <a href="https://doi.org/10.1109/sfcs.1994.365718">https://doi.org/10.1109/sfcs.1994.365718</a>.
  ieee: M. H. Henzinger, “Fully dynamic cycle-equivalence in graphs,” in <i>35th Annual
    Symposium on Foundations of Computer Science</i>, Santa Fe, NM, United States,
    1994, pp. 744–755.
  ista: 'Henzinger MH. 1994. Fully dynamic cycle-equivalence in graphs. 35th Annual
    Symposium on Foundations of Computer Science. FOCS: Symposium on Foundations of
    Computer Science, 744–755.'
  mla: Henzinger, Monika H. “Fully Dynamic Cycle-Equivalence in Graphs.” <i>35th Annual
    Symposium on Foundations of Computer Science</i>, Institute of Electrical and
    Electronics Engineers, 1994, pp. 744–55, doi:<a href="https://doi.org/10.1109/sfcs.1994.365718">10.1109/sfcs.1994.365718</a>.
  short: M.H. Henzinger, in:, 35th Annual Symposium on Foundations of Computer Science,
    Institute of Electrical and Electronics Engineers, 1994, pp. 744–755.
conference:
  end_date: 1994-11-22
  location: Santa Fe, NM, United States
  name: 'FOCS: Symposium on Foundations of Computer Science'
  start_date: 1994-11-20
date_created: 2022-08-16T08:29:08Z
date_published: 1994-11-01T00:00:00Z
date_updated: 2023-02-17T09:58:04Z
day: '01'
doi: 10.1109/sfcs.1994.365718
extern: '1'
language:
- iso: eng
month: '11'
oa_version: None
page: 744 - 755
publication: 35th Annual Symposium on Foundations of Computer Science
publication_identifier:
  isbn:
  - 0-8186-6580-7
publication_status: published
publisher: Institute of Electrical and Electronics Engineers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fully dynamic cycle-equivalence in graphs
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '1994'
...
---
_id: '3453'
alternative_title:
- Advances in second messenger and phosphoprotein research
article_processing_charge: No
author:
- first_name: Eberhard
  full_name: Von Kitzing, Eberhard
  last_name: Von Kitzing
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
- first_name: Bert
  full_name: Sakmann, Bert
  last_name: Sakmann
citation:
  ama: Von Kitzing E, Jonas PM, Sakmann B. Quantal analysis of excitatory postsynaptic
    currents at the hippocampal mossy fiber-CA3 pyramidal cell synapse. <i>Molecular
    and cellular mechanisms of neurotransmitter release</i>. 1994;29:235-260. doi:<a
    href="https://doi.org/10.1016/0166-2236(95)90088-8">10.1016/0166-2236(95)90088-8</a>
  apa: Von Kitzing, E., Jonas, P. M., &#38; Sakmann, B. (1994). Quantal analysis of
    excitatory postsynaptic currents at the hippocampal mossy fiber-CA3 pyramidal
    cell synapse. <i>Molecular and Cellular Mechanisms of Neurotransmitter Release</i>.
    Raven Press. <a href="https://doi.org/10.1016/0166-2236(95)90088-8">https://doi.org/10.1016/0166-2236(95)90088-8</a>
  chicago: Von Kitzing, Eberhard, Peter M Jonas, and Bert Sakmann. “Quantal Analysis
    of Excitatory Postsynaptic Currents at the Hippocampal Mossy Fiber-CA3 Pyramidal
    Cell Synapse.” <i>Molecular and Cellular Mechanisms of Neurotransmitter Release</i>.
    Raven Press, 1994. <a href="https://doi.org/10.1016/0166-2236(95)90088-8">https://doi.org/10.1016/0166-2236(95)90088-8</a>.
  ieee: E. Von Kitzing, P. M. Jonas, and B. Sakmann, “Quantal analysis of excitatory
    postsynaptic currents at the hippocampal mossy fiber-CA3 pyramidal cell synapse,”
    <i>Molecular and cellular mechanisms of neurotransmitter release</i>, vol. 29.
    Raven Press, pp. 235–260, 1994.
  ista: Von Kitzing E, Jonas PM, Sakmann B. 1994. Quantal analysis of excitatory postsynaptic
    currents at the hippocampal mossy fiber-CA3 pyramidal cell synapse. Molecular
    and cellular mechanisms of neurotransmitter release. 29, 235–260.
  mla: Von Kitzing, Eberhard, et al. “Quantal Analysis of Excitatory Postsynaptic
    Currents at the Hippocampal Mossy Fiber-CA3 Pyramidal Cell Synapse.” <i>Molecular
    and Cellular Mechanisms of Neurotransmitter Release</i>, vol. 29, Raven Press,
    1994, pp. 235–60, doi:<a href="https://doi.org/10.1016/0166-2236(95)90088-8">10.1016/0166-2236(95)90088-8</a>.
  short: E. Von Kitzing, P.M. Jonas, B. Sakmann, Molecular and Cellular Mechanisms
    of Neurotransmitter Release 29 (1994) 235–260.
date_created: 2018-12-11T12:03:24Z
date_published: 1994-01-01T00:00:00Z
date_updated: 2022-06-03T11:46:09Z
day: '01'
doi: 10.1016/0166-2236(95)90088-8
extern: '1'
external_id:
  pmid:
  - '7848714 '
intvolume: '        29'
language:
- iso: eng
main_file_link:
- url: https://www.sciencedirect.com/science/article/pii/0166223695900888?via%3Dihub
month: '01'
oa_version: None
page: 235 - 260
pmid: 1
publication: Molecular and cellular mechanisms of neurotransmitter release
publication_identifier:
  isbn:
  - '0781702208'
publication_status: published
publisher: Raven Press
publist_id: '2934'
quality_controlled: '1'
status: public
title: Quantal analysis of excitatory postsynaptic currents at the hippocampal mossy
  fiber-CA3 pyramidal cell synapse
type: review
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 29
year: '1994'
...
---
_id: '3460'
abstract:
- lang: eng
  text: Excitatory postsynaptic currents in neurones of the central nervous system
    have a dual-component time course that results from the co-activation of AMPA/kainate-type
    and NMDA-type glutamate receptors. New approaches in electrophysiology and molecular
    biology have provided a better understanding of the factors that determine the
    kinectics of excitatory postsynaptic currents. Recent studies suggest that the
    time course of neurotransmitter concentration in the synaptic cleft, the gating
    properties of the native channels, and the glutamate receptor subunit composition
    all appear to be important factors.
acknowledgement: 'We thank JGG Borst, N Burnashev, M Häusser, G Stuart and A Viilarroel
  for critically reading the manuscript and E von Kitzing and A Roth for doing the
  simulations and for many helpful discussions. Supported by the Deutsche Forschungsgemeinschaft
  (SFB 317-B14) and the Alexander von Humboldt Foundation. '
article_processing_charge: No
article_type: original
author:
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
- first_name: Nelson
  full_name: Spruston, Nelson
  last_name: Spruston
citation:
  ama: Jonas PM, Spruston N. Mechanisms shaping glutamate-mediated excitatory postsynaptic
    currents in the CNS. <i>Current Opinion in Neurobiology</i>. 1994;4(3):366-372.
    doi:<a href="https://doi.org/10.1016/0959-4388(94)90098-1">10.1016/0959-4388(94)90098-1</a>
  apa: Jonas, P. M., &#38; Spruston, N. (1994). Mechanisms shaping glutamate-mediated
    excitatory postsynaptic currents in the CNS. <i>Current Opinion in Neurobiology</i>.
    Elsevier. <a href="https://doi.org/10.1016/0959-4388(94)90098-1">https://doi.org/10.1016/0959-4388(94)90098-1</a>
  chicago: Jonas, Peter M, and Nelson Spruston. “Mechanisms Shaping Glutamate-Mediated
    Excitatory Postsynaptic Currents in the CNS.” <i>Current Opinion in Neurobiology</i>.
    Elsevier, 1994. <a href="https://doi.org/10.1016/0959-4388(94)90098-1">https://doi.org/10.1016/0959-4388(94)90098-1</a>.
  ieee: P. M. Jonas and N. Spruston, “Mechanisms shaping glutamate-mediated excitatory
    postsynaptic currents in the CNS,” <i>Current Opinion in Neurobiology</i>, vol.
    4, no. 3. Elsevier, pp. 366–372, 1994.
  ista: Jonas PM, Spruston N. 1994. Mechanisms shaping glutamate-mediated excitatory
    postsynaptic currents in the CNS. Current Opinion in Neurobiology. 4(3), 366–372.
  mla: Jonas, Peter M., and Nelson Spruston. “Mechanisms Shaping Glutamate-Mediated
    Excitatory Postsynaptic Currents in the CNS.” <i>Current Opinion in Neurobiology</i>,
    vol. 4, no. 3, Elsevier, 1994, pp. 366–72, doi:<a href="https://doi.org/10.1016/0959-4388(94)90098-1">10.1016/0959-4388(94)90098-1</a>.
  short: P.M. Jonas, N. Spruston, Current Opinion in Neurobiology 4 (1994) 366–372.
date_created: 2018-12-11T12:03:27Z
date_published: 1994-06-01T00:00:00Z
date_updated: 2022-06-03T11:26:52Z
day: '01'
doi: 10.1016/0959-4388(94)90098-1
extern: '1'
external_id:
  pmid:
  - '7522678 '
intvolume: '         4'
issue: '3'
language:
- iso: eng
main_file_link:
- url: https://www.sciencedirect.com/science/article/pii/0959438894900981?via%3Dihub
month: '06'
oa_version: None
page: 366 - 372
pmid: 1
publication: Current Opinion in Neurobiology
publication_identifier:
  issn:
  - 0959-4388
publication_status: published
publisher: Elsevier
publist_id: '2927'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mechanisms shaping glutamate-mediated excitatory postsynaptic currents in the
  CNS
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 4
year: '1994'
...
---
_id: '3475'
abstract:
- lang: eng
  text: '1. A potassium channel activated by internal Na+ ions (K+Na channel) was
    identified in peripheral myelinated axons of Xenopus laevis using the cell-attached
    and excised configurations of the patch clamp technique. 2. The single-channel
    conductance for the main open state was 88 pS with [K+]o = 105 mM and pS with
    [K+]o = 2.5 mM ([K+]i = 105 mM). The channel was selectively permeable to K+ over
    Na+ ions. A characteristic feature of the K+Na channel was the frequent occurrence
    of subconductance states. 3. The open probability of the channel was strongly
    dependent on the concentration of Na+ ions at the inner side of the membrane.
    The half-maximal activating Na+ concentration and the Hill coefficient were 33
    mM and 2.9, respectively. The open probability of the channel showed only weak
    potential dependence. 4. The K+Na channel was relatively insensitive to external
    tetraethylammonium (TEA+) in comparison with voltage-dependent axonal K+ channels;
    the half-maximal inhibitory concentration (IC50) was 21.3 mM (at -90 mV). In contrast,
    the channel was blocked by low concentrations of external Ba2+ and Cs+ ions, with
    IC50 values of 0.7 and 1.1 mM, respectively (at -90 mV). The block by Ba2+ and
    Cs+ was more pronounced at negative than at positive membrane potentials. 5. A
    comparison of the number of K+Na channels in nodal and paranodal patches from
    the same axon revealed that the channel density was about 10-fold higher at the
    node of Ranvier than at the paranode. Moreover, a correlation between the number
    of K+Na channels and voltage-dependent Na+ channels in the same patches was found,
    suggesting co-localization of both channel types. 6. As weakly potential-dependent
    (''leakage'') channels, axonal K+Na channels may be involved in setting the resting
    potential of vertebrate axons. Simulations of Na+ ion diffusion suggest two possible
    mechanisms of activation of K+Na channels: the local increase of Na+ concentration
    in a cluster of Na+ channels during a single action potential or the accumulation
    in the intracellular axonal compartment during a train of action potentials.'
acknowledgement: 'We thank Drs M.Häusser and A. Villarroel for critically reading
  the manuscript, Dr E. v. Kitzing and A. Roth for many helpful discussions. This
  work was supported by the Deutsche Forschungsgemeinschaft (Vo188/13-2). '
article_processing_charge: No
article_type: original
author:
- first_name: Duk
  full_name: Koh, Duk
  last_name: Koh
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
- first_name: Werner
  full_name: Vogel, Werner
  last_name: Vogel
citation:
  ama: Koh D, Jonas PM, Vogel W. Na+-activated K+ channels localized in the nodal
    region of myelinated axons of Xenopus. <i>Journal of Physiology</i>. 1994;479:183-197.
    doi:<a href="https://doi.org/10.1113/jphysiol.1994.sp020287">10.1113/jphysiol.1994.sp020287</a>
  apa: Koh, D., Jonas, P. M., &#38; Vogel, W. (1994). Na+-activated K+ channels localized
    in the nodal region of myelinated axons of Xenopus. <i>Journal of Physiology</i>.
    Wiley-Blackwell. <a href="https://doi.org/10.1113/jphysiol.1994.sp020287">https://doi.org/10.1113/jphysiol.1994.sp020287</a>
  chicago: Koh, Duk, Peter M Jonas, and Werner Vogel. “Na+-Activated K+ Channels Localized
    in the Nodal Region of Myelinated Axons of Xenopus.” <i>Journal of Physiology</i>.
    Wiley-Blackwell, 1994. <a href="https://doi.org/10.1113/jphysiol.1994.sp020287">https://doi.org/10.1113/jphysiol.1994.sp020287</a>.
  ieee: D. Koh, P. M. Jonas, and W. Vogel, “Na+-activated K+ channels localized in
    the nodal region of myelinated axons of Xenopus,” <i>Journal of Physiology</i>,
    vol. 479. Wiley-Blackwell, pp. 183–197, 1994.
  ista: Koh D, Jonas PM, Vogel W. 1994. Na+-activated K+ channels localized in the
    nodal region of myelinated axons of Xenopus. Journal of Physiology. 479, 183–197.
  mla: Koh, Duk, et al. “Na+-Activated K+ Channels Localized in the Nodal Region of
    Myelinated Axons of Xenopus.” <i>Journal of Physiology</i>, vol. 479, Wiley-Blackwell,
    1994, pp. 183–97, doi:<a href="https://doi.org/10.1113/jphysiol.1994.sp020287">10.1113/jphysiol.1994.sp020287</a>.
  short: D. Koh, P.M. Jonas, W. Vogel, Journal of Physiology 479 (1994) 183–197.
date_created: 2018-12-11T12:03:31Z
date_published: 1994-01-01T00:00:00Z
date_updated: 2022-06-03T11:09:21Z
day: '01'
doi: 10.1113/jphysiol.1994.sp020287
extern: '1'
external_id:
  pmid:
  - '7799220 '
intvolume: '       479'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1155738/
month: '01'
oa: 1
oa_version: Published Version
page: 183 - 197
pmid: 1
publication: Journal of Physiology
publication_identifier:
  issn:
  - 0022-3751
publication_status: published
publisher: Wiley-Blackwell
publist_id: '2912'
quality_controlled: '1'
status: public
title: Na+-activated K+ channels localized in the nodal region of myelinated axons
  of Xenopus
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 479
year: '1994'
...
---
_id: '3476'
abstract:
- lang: eng
  text: Tight-seal whole-cell recordings were made from cleaned somata of CA3 pyramidal
    cells deep in hippocampal slices from 19–21-d-old rats. The cells were filled
    with biocytin, and their voltage responses to short current pulses were recorded.
    After washout of initial sag, responses scaled linearly with injected current
    and were stable over time. The dendritic and axonal arbors of four cells were
    reconstructed and measured using light microscopy. Dendritic spines and axonal
    boutons were counted and the additional membrane area was incorporated into the
    relevant segments. The morphology of each neuron was converted into a detailed
    branching cable model by assuming values for specific membrane capacitance Cm
    and resistance Rm, and cytoplasmic resistivity Ri. These parameters were optimized
    for each cell by directly matching the model's response to that of the real cell
    by means of a modified weighted least-squares fitting procedure. By comparing
    the deviations between model and experimental responses to control noise recordings,
    approximate 95% confidence intervals were established for each parameter. If a
    somatic shunt was allowed, a wide range of possible Rm values produced acceptable
    fits. With zero shunt, Cm was 0.7–0.8 microFcm-2, Ri was 170–340 omega cm, and
    Rm ranged between 120 and 200 k omega cm2. The electrotonic lengths of the basal
    and oblique dendrites were 0.2–0.3 space constants, and those of the apical tufts
    were 0.4–0.7 space constants. The steady-state electrical geometry of these cells
    was therefore compact; average dendritic tip/soma relative synaptic efficacies
    were &gt; 93% for the basal and oblique dendrites, and &gt; 81% for the tufts.
    With fast transient synaptic inputs, however, the models produced a wide range
    of postsynaptic potential shapes and marked filtering of voltage-clamp currents.
acknowledgement: 'logy Training Fellowship. A.L. was supported by a Royal Society
  Fellowship. The Oxford part of the collaboration was funded by a Wellcome Trust
  Programme Grant, the Heidelberg part by the Max-Planck Gesellschaft. We are grateful
  to Sir David Cox for his comments on the statistics, to K. Stratford, M. Hausser,
  D. Flitney, M. O’Neill, S. Gough, G. Stuart, N. Spruston, P. Stem, and K. Bauer
  for their help and useful discussions, and to M. Kaiser for technical assistance. '
article_processing_charge: No
article_type: original
author:
- first_name: Guy
  full_name: Major, Guy
  last_name: Major
- first_name: Alan
  full_name: Larkman, Alan
  last_name: Larkman
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
- first_name: Bert
  full_name: Sakmann, Bert
  last_name: Sakmann
- first_name: Julian
  full_name: Jack, Julian
  last_name: Jack
citation:
  ama: Major G, Larkman A, Jonas PM, Sakmann B, Jack J. Detailed passive cable models
    of whole-cell recorded CA3 pyramidal neurons in rat hippocampal slices. <i>Journal
    of Neuroscience</i>. 1994;14(8):4613-4638. doi:<a href="https://doi.org/10.1523/JNEUROSCI.14-08-04613.1994">10.1523/JNEUROSCI.14-08-04613.1994</a>
  apa: Major, G., Larkman, A., Jonas, P. M., Sakmann, B., &#38; Jack, J. (1994). Detailed
    passive cable models of whole-cell recorded CA3 pyramidal neurons in rat hippocampal
    slices. <i>Journal of Neuroscience</i>. Society for Neuroscience. <a href="https://doi.org/10.1523/JNEUROSCI.14-08-04613.1994">https://doi.org/10.1523/JNEUROSCI.14-08-04613.1994</a>
  chicago: Major, Guy, Alan Larkman, Peter M Jonas, Bert Sakmann, and Julian Jack.
    “Detailed Passive Cable Models of Whole-Cell Recorded CA3 Pyramidal Neurons in
    Rat Hippocampal Slices.” <i>Journal of Neuroscience</i>. Society for Neuroscience,
    1994. <a href="https://doi.org/10.1523/JNEUROSCI.14-08-04613.1994">https://doi.org/10.1523/JNEUROSCI.14-08-04613.1994</a>.
  ieee: G. Major, A. Larkman, P. M. Jonas, B. Sakmann, and J. Jack, “Detailed passive
    cable models of whole-cell recorded CA3 pyramidal neurons in rat hippocampal slices,”
    <i>Journal of Neuroscience</i>, vol. 14, no. 8. Society for Neuroscience, pp.
    4613–4638, 1994.
  ista: Major G, Larkman A, Jonas PM, Sakmann B, Jack J. 1994. Detailed passive cable
    models of whole-cell recorded CA3 pyramidal neurons in rat hippocampal slices.
    Journal of Neuroscience. 14(8), 4613–4638.
  mla: Major, Guy, et al. “Detailed Passive Cable Models of Whole-Cell Recorded CA3
    Pyramidal Neurons in Rat Hippocampal Slices.” <i>Journal of Neuroscience</i>,
    vol. 14, no. 8, Society for Neuroscience, 1994, pp. 4613–38, doi:<a href="https://doi.org/10.1523/JNEUROSCI.14-08-04613.1994">10.1523/JNEUROSCI.14-08-04613.1994</a>.
  short: G. Major, A. Larkman, P.M. Jonas, B. Sakmann, J. Jack, Journal of Neuroscience
    14 (1994) 4613–4638.
date_created: 2018-12-11T12:03:32Z
date_published: 1994-08-01T00:00:00Z
date_updated: 2022-06-03T09:36:43Z
day: '01'
doi: 10.1523/JNEUROSCI.14-08-04613.1994
extern: '1'
external_id:
  pmid:
  - '8046439 '
intvolume: '        14'
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://europepmc.org/article/med/8046439
month: '08'
oa: 1
oa_version: Published Version
page: 4613 - 4638
pmid: 1
publication: Journal of Neuroscience
publication_identifier:
  issn:
  - 0270-6474
publication_status: published
publisher: Society for Neuroscience
publist_id: '2911'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Detailed passive cable models of whole-cell recorded CA3 pyramidal neurons
  in rat hippocampal slices
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 14
year: '1994'
...
---
_id: '3477'
abstract:
- lang: eng
  text: Fast excitatory synaptic transmission in the CNS is mediated by AMPA-type
    glutamate receptor (GluR) channels. Heterologous expression suggested that the
    Ca2+ permeability of these receptors critically depends on the subunit composition.
    Using patch-clamp techniques in brain slices, we found that the Ca2+ permeability
    of native AMPA-type GluRs was markedly higher in nonpyramidal (P(Ca)/P(K) ≃ 0.63)
    than in pyramidal (P(Ca)/P(K) ≃ 0.05) neurons of rat neocortex. Analysis of mRNA
    in single cells indicated that the relative abundance of GluR-B-specific mRNA
    was significantly lower in nonpyramidal (GluR-B/GluR-non-B ≃ 0.3) than in pyramidal
    (GluR-B/GluR-non-B ≃ 3) cells. This suggests that differences in relative abundance
    of GluR-B- specific mRNA generate functional diversity of AMPA-type GluRs in neurons
    with respect to Ca2+ permeability.
acknowledgement: We thank Drs. B. Lambolez and J. Rossier for helping to establish
  the method of single-cell PCR, Dr. M. Frotscher for help with cell identification,
  Dr. N. Spruston for critically reading the manuscript, and M. Kaiser and U. Keller
  for technical assistance. This work was supported in part by BMFT grant BCT 364
  AZ 3211 7291 (P. H. S.) and by DFG grant SFB-317/B14 (P. J.). The costs of publication
  of this article were defrayed in part by the payment of page charges. This article
  must therefore be hereby marked “advertisement” in accordance with 18 USC Section
  1734 solely to indicate this fact.
article_processing_charge: No
article_type: original
author:
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
- first_name: Claudia
  full_name: Racca, Claudia
  last_name: Racca
- first_name: Bert
  full_name: Sakmann, Bert
  last_name: Sakmann
- first_name: Peter
  full_name: Seeburg, Peter
  last_name: Seeburg
- first_name: Hannah
  full_name: Monyer, Hannah
  last_name: Monyer
citation:
  ama: Jonas PM, Racca C, Sakmann B, Seeburg P, Monyer H. Differences in Ca(2+) permeability
    of AMPA-type glutamate receptor channels in neocortical neurons caused by differential
    GluR-B subunit expression. <i>Neuron</i>. 1994;12(6):1281-1289. doi:<a href="https://doi.org/10.1016/0896-6273(94)90444-8">10.1016/0896-6273(94)90444-8</a>
  apa: Jonas, P. M., Racca, C., Sakmann, B., Seeburg, P., &#38; Monyer, H. (1994).
    Differences in Ca(2+) permeability of AMPA-type glutamate receptor channels in
    neocortical neurons caused by differential GluR-B subunit expression. <i>Neuron</i>.
    Elsevier. <a href="https://doi.org/10.1016/0896-6273(94)90444-8">https://doi.org/10.1016/0896-6273(94)90444-8</a>
  chicago: Jonas, Peter M, Claudia Racca, Bert Sakmann, Peter Seeburg, and Hannah
    Monyer. “Differences in Ca(2+) Permeability of AMPA-Type Glutamate Receptor Channels
    in Neocortical Neurons Caused by Differential GluR-B Subunit Expression.” <i>Neuron</i>.
    Elsevier, 1994. <a href="https://doi.org/10.1016/0896-6273(94)90444-8">https://doi.org/10.1016/0896-6273(94)90444-8</a>.
  ieee: P. M. Jonas, C. Racca, B. Sakmann, P. Seeburg, and H. Monyer, “Differences
    in Ca(2+) permeability of AMPA-type glutamate receptor channels in neocortical
    neurons caused by differential GluR-B subunit expression,” <i>Neuron</i>, vol.
    12, no. 6. Elsevier, pp. 1281–1289, 1994.
  ista: Jonas PM, Racca C, Sakmann B, Seeburg P, Monyer H. 1994. Differences in Ca(2+)
    permeability of AMPA-type glutamate receptor channels in neocortical neurons caused
    by differential GluR-B subunit expression. Neuron. 12(6), 1281–1289.
  mla: Jonas, Peter M., et al. “Differences in Ca(2+) Permeability of AMPA-Type Glutamate
    Receptor Channels in Neocortical Neurons Caused by Differential GluR-B Subunit
    Expression.” <i>Neuron</i>, vol. 12, no. 6, Elsevier, 1994, pp. 1281–89, doi:<a
    href="https://doi.org/10.1016/0896-6273(94)90444-8">10.1016/0896-6273(94)90444-8</a>.
  short: P.M. Jonas, C. Racca, B. Sakmann, P. Seeburg, H. Monyer, Neuron 12 (1994)
    1281–1289.
date_created: 2018-12-11T12:03:32Z
date_published: 1994-06-01T00:00:00Z
date_updated: 2022-06-03T09:29:36Z
day: '01'
doi: 10.1016/0896-6273(94)90444-8
extern: '1'
external_id:
  pmid:
  - '8011338 '
intvolume: '        12'
issue: '6'
language:
- iso: eng
main_file_link:
- url: https://www.sciencedirect.com/science/article/pii/0896627394904448?via%3Dihub
month: '06'
oa_version: None
page: 1281 - 1289
pmid: 1
publication: Neuron
publication_identifier:
  issn:
  - 0896-6273
publication_status: published
publisher: Elsevier
publist_id: '2910'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Differences in Ca(2+) permeability of AMPA-type glutamate receptor channels
  in neocortical neurons caused by differential GluR-B subunit expression
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 12
year: '1994'
...
---
_id: '3550'
acknowledgement: This work is partially supported by the National Science Foundation,
  under grant ASC-9200301 and the Alan T. Waterman award, grant CCR-9118874
article_processing_charge: No
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
citation:
  ama: 'Edelsbrunner H. Modeling with simplicial complexes (topology, geometry and
    algorithms). In: <i>Proceedings of the 6th Canadian Conference on Computational
    Geometry</i>. ; 1994:36-44.'
  apa: Edelsbrunner, H. (1994). Modeling with simplicial complexes (topology, geometry
    and algorithms). In <i>Proceedings of the 6th Canadian Conference on Computational
    Geometry</i> (pp. 36–44). Saskatoon, Canada.
  chicago: Edelsbrunner, Herbert. “Modeling with Simplicial Complexes (Topology, Geometry
    and Algorithms).” In <i>Proceedings of the 6th Canadian Conference on Computational
    Geometry</i>, 36–44, 1994.
  ieee: H. Edelsbrunner, “Modeling with simplicial complexes (topology, geometry and
    algorithms),” in <i>Proceedings of the 6th Canadian Conference on Computational
    Geometry</i>, Saskatoon, Canada, 1994, pp. 36–44.
  ista: 'Edelsbrunner H. 1994. Modeling with simplicial complexes (topology, geometry
    and algorithms). Proceedings of the 6th Canadian Conference on Computational Geometry.
    CCCG: Canadian Conference on Computational Geometry, 36–44.'
  mla: Edelsbrunner, Herbert. “Modeling with Simplicial Complexes (Topology, Geometry
    and Algorithms).” <i>Proceedings of the 6th Canadian Conference on Computational
    Geometry</i>, 1994, pp. 36–44.
  short: H. Edelsbrunner, in:, Proceedings of the 6th Canadian Conference on Computational
    Geometry, 1994, pp. 36–44.
conference:
  location: Saskatoon, Canada
  name: 'CCCG: Canadian Conference on Computational Geometry'
date_created: 2018-12-11T12:03:55Z
date_published: 1994-08-01T00:00:00Z
date_updated: 2022-06-03T08:50:45Z
day: '01'
extern: '1'
language:
- iso: eng
month: '08'
oa_version: None
page: 36 - 44
publication: Proceedings of the 6th Canadian Conference on Computational Geometry
publication_status: published
publist_id: '2835'
quality_controlled: '1'
status: public
title: Modeling with simplicial complexes (topology, geometry and algorithms)
type: conference
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
year: '1994'
...
---
_id: '3641'
abstract:
- lang: eng
  text: The probability of fixation of a mutation with selective advantage s will
    be reduced by substitutions at other loci. The effect of a single substitution,
    with selective advantage S0016672300032857inline1, can be approximated as a sudden
    reduction in the frequency of the favourable allele, by a fraction w = 1 −(s/S)r/s
    (where r is the recombination rate). An expression for the effect of a given sequence
    of such catastrophes is derived. This also applies to the ecological prxoblem
    of finding the probability that a small population will survive, despite occasional
    disasters. It is shown that if substitutions occur at a rate Δ, and are scattered
    randomly over a genetic map of length R, then an allele is unlikely to be fixed
    if its advantage is less than a critical value, Scrit = (π2/6)(2ΔS/(Rlog(S/s))).
    This threshold depends primarily on the variance in fitness per unit map length
    dueto substitutions, var(W)/R = 2ΔS/R. With no recombination, the fixation probability
    can be calculated for a finite population. If Δ &gt; s, it is of the same order
    as for a neutral allele ( ≈ Δ/(2N(Δ−s))), whilst if S0016672300032857inline2,
    fixation probability is much higher than for a neutral allele, but much lower
    than in the absence of hitch-hiking S0016672300032857inline3. These results suggest
    that hitch-hiking may substantially impede the accumulation of weakly favoured
    adaptations.
article_processing_charge: No
article_type: original
author:
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: Barton NH. The reduction in fixation probability caused by substitutions at
    linked loci. <i>Genetical Research</i>. 1994;64(3):199-208. doi:<a href="https://doi.org/10.1017/S0016672300032857
    ">10.1017/S0016672300032857 </a>
  apa: Barton, N. H. (1994). The reduction in fixation probability caused by substitutions
    at linked loci. <i>Genetical Research</i>. Cambridge University Press. <a href="https://doi.org/10.1017/S0016672300032857
    ">https://doi.org/10.1017/S0016672300032857 </a>
  chicago: Barton, Nicholas H. “The Reduction in Fixation Probability Caused by Substitutions
    at Linked Loci.” <i>Genetical Research</i>. Cambridge University Press, 1994.
    <a href="https://doi.org/10.1017/S0016672300032857 ">https://doi.org/10.1017/S0016672300032857
    </a>.
  ieee: N. H. Barton, “The reduction in fixation probability caused by substitutions
    at linked loci,” <i>Genetical Research</i>, vol. 64, no. 3. Cambridge University
    Press, pp. 199–208, 1994.
  ista: Barton NH. 1994. The reduction in fixation probability caused by substitutions
    at linked loci. Genetical Research. 64(3), 199–208.
  mla: Barton, Nicholas H. “The Reduction in Fixation Probability Caused by Substitutions
    at Linked Loci.” <i>Genetical Research</i>, vol. 64, no. 3, Cambridge University
    Press, 1994, pp. 199–208, doi:<a href="https://doi.org/10.1017/S0016672300032857
    ">10.1017/S0016672300032857 </a>.
  short: N.H. Barton, Genetical Research 64 (1994) 199–208.
date_created: 2018-12-11T12:04:23Z
date_published: 1994-12-01T00:00:00Z
date_updated: 2022-06-03T08:34:32Z
day: '01'
doi: '10.1017/S0016672300032857 '
extern: '1'
intvolume: '        64'
issue: '3'
language:
- iso: eng
main_file_link:
- url: https://www.cambridge.org/core/journals/genetics-research/article/reduction-in-fixation-probability-caused-by-substitutions-at-linked-loci/458BBF3E7FE92E4EA6AFB2B000A98945
month: '12'
oa_version: None
page: 199 - 208
publication: Genetical Research
publication_identifier:
  issn:
  - 0016-6723
publication_status: published
publisher: Cambridge University Press
publist_id: '2742'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The reduction in fixation probability caused by substitutions at linked loci
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 64
year: '1994'
...
---
_id: '3642'
abstract:
- lang: eng
  text: We develop a general population genetic framework for analyzing selection
    on many loci, and apply it to strong truncation and disruptive selection on an
    additive polygenic trait. We first present statistical methods for analyzing the
    infinitesimal model, in which offspring breeding values are normally distributed
    around the mean of the parents, with fixed variance. These show that the usual
    assumption of a Gaussian distribution of breeding values in the population gives
    remarkably accurate predictions for the mean and the variance, even when disruptive
    selection generates substantial deviations from normality. We then set out a general
    genetic analysis of selection and recombination. The population is represented
    by multilocus cumulants describing the distribution of haploid genotypes, and
    selection is described by the relation between mean fitness and these cumulants.
    We provide exact recursions in terms of generating functions for the effects of
    selection on non-central moments. The effects of recombination are simply calculated
    as a weighted sum over all the permutations produced by meiosis. Finally, the
    new cumulants that describe the next generation are computed from the non-central
    moments. Although this scheme is applied here in detail only to selection on an
    additive trait, it is quite general. For arbitrary epistasis and linkage, we describe
    a consistent infinitesimal limit in which the short-term selection response is
    dominated by infinitesimal allele frequency changes and linkage disequilibria.
    Numerical multilocus results show that the standard Gaussian approximation gives
    accurate predictions for the dynamics of the mean and genetic variance in this
    limit. Even with intense truncation selection, linkage disequilibria of order
    three and higher never cause much deviation from normality. Thus, the empirical
    deviations frequently found between predicted and observed responses to artificial
    selection are not caused by linkage-disequilibrium-induced departures from normality.
    Disruptive selection can generate substantial four-way disequilibria, and hence
    kurtosis; but even then, the Gaussian assumption predicts the variance accurately.
    In contrast to the apparent simplicity of the infinitesimal limit, data suggest
    that changes in genetic variance after 10 or more generations of selection are
    likely to be dominated by allele frequency dynamics that depend on genetic details.
article_processing_charge: No
article_type: original
author:
- first_name: Michael
  full_name: Turelli, Michael
  last_name: Turelli
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: 'Turelli M, Barton NH. Genetic and statistical analyses of strong selection
    on polygenic traits: What, me normal? <i>Genetics</i>. 1994;138(3):913-941. doi:<a
    href="https://doi.org/10.1093/genetics/138.3.913">10.1093/genetics/138.3.913</a>'
  apa: 'Turelli, M., &#38; Barton, N. H. (1994). Genetic and statistical analyses
    of strong selection on polygenic traits: What, me normal? <i>Genetics</i>. Genetics
    Society of America. <a href="https://doi.org/10.1093/genetics/138.3.913">https://doi.org/10.1093/genetics/138.3.913</a>'
  chicago: 'Turelli, Michael, and Nicholas H Barton. “Genetic and Statistical Analyses
    of Strong Selection on Polygenic Traits: What, Me Normal?” <i>Genetics</i>. Genetics
    Society of America, 1994. <a href="https://doi.org/10.1093/genetics/138.3.913">https://doi.org/10.1093/genetics/138.3.913</a>.'
  ieee: 'M. Turelli and N. H. Barton, “Genetic and statistical analyses of strong
    selection on polygenic traits: What, me normal?,” <i>Genetics</i>, vol. 138, no.
    3. Genetics Society of America, pp. 913–941, 1994.'
  ista: 'Turelli M, Barton NH. 1994. Genetic and statistical analyses of strong selection
    on polygenic traits: What, me normal? Genetics. 138(3), 913–941.'
  mla: 'Turelli, Michael, and Nicholas H. Barton. “Genetic and Statistical Analyses
    of Strong Selection on Polygenic Traits: What, Me Normal?” <i>Genetics</i>, vol.
    138, no. 3, Genetics Society of America, 1994, pp. 913–41, doi:<a href="https://doi.org/10.1093/genetics/138.3.913">10.1093/genetics/138.3.913</a>.'
  short: M. Turelli, N.H. Barton, Genetics 138 (1994) 913–941.
date_created: 2018-12-11T12:04:24Z
date_published: 1994-11-01T00:00:00Z
date_updated: 2022-06-03T08:18:54Z
day: '01'
doi: 10.1093/genetics/138.3.913
extern: '1'
external_id:
  pmid:
  - '7851785'
intvolume: '       138'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://pubmed.ncbi.nlm.nih.gov/7851785/
month: '11'
oa: 1
oa_version: Published Version
page: 913 - 941
pmid: 1
publication: Genetics
publication_identifier:
  issn:
  - 0016-6731
publication_status: published
publisher: Genetics Society of America
publist_id: '2741'
quality_controlled: '1'
status: public
title: 'Genetic and statistical analyses of strong selection on polygenic traits:
  What, me normal?'
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 138
year: '1994'
...
---
_id: '4032'
abstract:
- lang: eng
  text: Every collection of t≥2 n2 triangles with a total of n vertices in ℝ3 has
    Ω(t4/n6) crossing pairs. This implies that one of their edges meets Ω(t3/n6) of
    the triangles. From this it follows that n points in ℝ3 have only O(n8/3) halving
    planes.
acknowledgement: The research of H. Edelsbrunner was supported by the National Science
  Foundation under Grant CCR-8921421 and under an Alan T. Waterman award, Grant CCR-9118874.
  Any opinions, findings and conclusions or recommendations expressed in this publication
  are those of the authors and do not necessarily reflect the view of the National
  Science Foundation.
article_processing_charge: No
article_type: original
author:
- first_name: Tamal
  full_name: Dey, Tamal
  last_name: Dey
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
citation:
  ama: Dey T, Edelsbrunner H. Counting triangle crossings and halving planes. <i>Discrete
    &#38; Computational Geometry</i>. 1994;12(1):281-289. doi:<a href="https://doi.org/10.1007/BF02574381">10.1007/BF02574381</a>
  apa: Dey, T., &#38; Edelsbrunner, H. (1994). Counting triangle crossings and halving
    planes. <i>Discrete &#38; Computational Geometry</i>. Springer. <a href="https://doi.org/10.1007/BF02574381">https://doi.org/10.1007/BF02574381</a>
  chicago: Dey, Tamal, and Herbert Edelsbrunner. “Counting Triangle Crossings and
    Halving Planes.” <i>Discrete &#38; Computational Geometry</i>. Springer, 1994.
    <a href="https://doi.org/10.1007/BF02574381">https://doi.org/10.1007/BF02574381</a>.
  ieee: T. Dey and H. Edelsbrunner, “Counting triangle crossings and halving planes,”
    <i>Discrete &#38; Computational Geometry</i>, vol. 12, no. 1. Springer, pp. 281–289,
    1994.
  ista: Dey T, Edelsbrunner H. 1994. Counting triangle crossings and halving planes.
    Discrete &#38; Computational Geometry. 12(1), 281–289.
  mla: Dey, Tamal, and Herbert Edelsbrunner. “Counting Triangle Crossings and Halving
    Planes.” <i>Discrete &#38; Computational Geometry</i>, vol. 12, no. 1, Springer,
    1994, pp. 281–89, doi:<a href="https://doi.org/10.1007/BF02574381">10.1007/BF02574381</a>.
  short: T. Dey, H. Edelsbrunner, Discrete &#38; Computational Geometry 12 (1994)
    281–289.
date_created: 2018-12-11T12:06:33Z
date_published: 1994-09-01T00:00:00Z
date_updated: 2022-06-02T12:53:01Z
day: '01'
doi: 10.1007/BF02574381
extern: '1'
intvolume: '        12'
issue: '1'
language:
- iso: eng
main_file_link:
- url: https://link.springer.com/article/10.1007/BF02574381
month: '09'
oa_version: None
page: 281 - 289
publication: Discrete & Computational Geometry
publication_identifier:
  issn:
  - 0179-5376
publication_status: published
publisher: Springer
publist_id: '2091'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Counting triangle crossings and halving planes
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 12
year: '1994'
...
---
_id: '4033'
abstract:
- lang: eng
  text: 'A collection of geometric selection lemmas is proved, such as the following:
    For any set P of n points in three-dimensional space and any set S of m spheres,
    where each sphere passes through a distinct point pair in P. there exists a point
    x, not necessarily in P, that is enclosed by Ω(m2/(n2 log6 n2/m)) of the spheres
    in S. Similar results apply in arbitrary fixed dimensions, and for geometric bodies
    other than spheres. The results have applications in reducing the size of geometric
    structures, such as three-dimensional Delaunay triangulations and Gabriel graphs,
    by adding extra points to their defining sets.'
article_processing_charge: No
article_type: original
author:
- first_name: Bernard
  full_name: Chazelle, Bernard
  last_name: Chazelle
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Leonidas
  full_name: Guibas, Leonidas
  last_name: Guibas
- first_name: John
  full_name: Hershberger, John
  last_name: Hershberger
- first_name: Raimund
  full_name: Seidel, Raimund
  last_name: Seidel
- first_name: Micha
  full_name: Sharir, Micha
  last_name: Sharir
citation:
  ama: Chazelle B, Edelsbrunner H, Guibas L, Hershberger J, Seidel R, Sharir M. Selecting
    heavily covered points. <i>SIAM Journal on Computing</i>. 1994;23(6):1138-1151.
    doi:<a href="https://doi.org/10.1137/S0097539790179919 ">10.1137/S0097539790179919
    </a>
  apa: Chazelle, B., Edelsbrunner, H., Guibas, L., Hershberger, J., Seidel, R., &#38;
    Sharir, M. (1994). Selecting heavily covered points. <i>SIAM Journal on Computing</i>.
    SIAM. <a href="https://doi.org/10.1137/S0097539790179919 ">https://doi.org/10.1137/S0097539790179919
    </a>
  chicago: Chazelle, Bernard, Herbert Edelsbrunner, Leonidas Guibas, John Hershberger,
    Raimund Seidel, and Micha Sharir. “Selecting Heavily Covered Points.” <i>SIAM
    Journal on Computing</i>. SIAM, 1994. <a href="https://doi.org/10.1137/S0097539790179919
    ">https://doi.org/10.1137/S0097539790179919 </a>.
  ieee: B. Chazelle, H. Edelsbrunner, L. Guibas, J. Hershberger, R. Seidel, and M.
    Sharir, “Selecting heavily covered points,” <i>SIAM Journal on Computing</i>,
    vol. 23, no. 6. SIAM, pp. 1138–1151, 1994.
  ista: Chazelle B, Edelsbrunner H, Guibas L, Hershberger J, Seidel R, Sharir M. 1994.
    Selecting heavily covered points. SIAM Journal on Computing. 23(6), 1138–1151.
  mla: Chazelle, Bernard, et al. “Selecting Heavily Covered Points.” <i>SIAM Journal
    on Computing</i>, vol. 23, no. 6, SIAM, 1994, pp. 1138–51, doi:<a href="https://doi.org/10.1137/S0097539790179919
    ">10.1137/S0097539790179919 </a>.
  short: B. Chazelle, H. Edelsbrunner, L. Guibas, J. Hershberger, R. Seidel, M. Sharir,
    SIAM Journal on Computing 23 (1994) 1138–1151.
date_created: 2018-12-11T12:06:33Z
date_published: 1994-12-01T00:00:00Z
date_updated: 2022-06-03T06:41:56Z
day: '01'
doi: '10.1137/S0097539790179919 '
extern: '1'
intvolume: '        23'
issue: '6'
language:
- iso: eng
main_file_link:
- url: https://epubs.siam.org/doi/10.1137/S0097539790179919
month: '12'
oa_version: None
page: 1138 - 1151
publication: SIAM Journal on Computing
publication_identifier:
  issn:
  - 0097-5397
publication_status: published
publisher: SIAM
publist_id: '2092'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Selecting heavily covered points
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 23
year: '1994'
...
---
_id: '4037'
abstract:
- lang: eng
  text: Frequently, data in scientific computing is in its abstract form a finite
    point set in space, and it is sometimes useful or required to compute what one
    might call the `'shape” of the set. For that purpose, this article introduces
    the formal notion of the family of alpha-shapes of a finite point set in R3. Each
    shape is a well-defined polytope, derived from the Delaunay triangulation of the
    point set, with a parameter alpha is-an-element-of R controlling the desired level
    of detail. An algorithm is presented that constructs the entire family of shapes
    for a given set of size n in time O(n2), worst case. A robust implementation of
    the algorithm is discussed, and several applications in the area of scientific
    computing are mentioned.
acknowledgement: National Science Foundation under grant CCR-8921421 and  Alan T.
  Waterman award, grant CCR-9118874.
article_processing_charge: No
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Ernst
  full_name: Mücke, Ernst
  last_name: Mücke
citation:
  ama: Edelsbrunner H, Mücke E. Three-dimensional alpha shapes. <i>ACM Transactions
    on Graphics</i>. 1994;13(1):43-72. doi:<a href="https://doi.org/10.1145/174462.156635">10.1145/174462.156635</a>
  apa: Edelsbrunner, H., &#38; Mücke, E. (1994). Three-dimensional alpha shapes. <i>ACM
    Transactions on Graphics</i>. ACM. <a href="https://doi.org/10.1145/174462.156635">https://doi.org/10.1145/174462.156635</a>
  chicago: Edelsbrunner, Herbert, and Ernst Mücke. “Three-Dimensional Alpha Shapes.”
    <i>ACM Transactions on Graphics</i>. ACM, 1994. <a href="https://doi.org/10.1145/174462.156635">https://doi.org/10.1145/174462.156635</a>.
  ieee: H. Edelsbrunner and E. Mücke, “Three-dimensional alpha shapes,” <i>ACM Transactions
    on Graphics</i>, vol. 13, no. 1. ACM, pp. 43–72, 1994.
  ista: Edelsbrunner H, Mücke E. 1994. Three-dimensional alpha shapes. ACM Transactions
    on Graphics. 13(1), 43–72.
  mla: Edelsbrunner, Herbert, and Ernst Mücke. “Three-Dimensional Alpha Shapes.” <i>ACM
    Transactions on Graphics</i>, vol. 13, no. 1, ACM, 1994, pp. 43–72, doi:<a href="https://doi.org/10.1145/174462.156635">10.1145/174462.156635</a>.
  short: H. Edelsbrunner, E. Mücke, ACM Transactions on Graphics 13 (1994) 43–72.
date_created: 2018-12-11T12:06:34Z
date_published: 1994-01-01T00:00:00Z
date_updated: 2022-06-02T12:00:42Z
day: '01'
doi: 10.1145/174462.156635
extern: '1'
intvolume: '        13'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://dl.acm.org/doi/10.1145/174462.156635
month: '01'
oa: 1
oa_version: None
page: 43 - 72
publication: ACM Transactions on Graphics
publication_status: published
publisher: ACM
publist_id: '2088'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Three-dimensional alpha shapes
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 13
year: '1994'
...
---
_id: '4038'
abstract:
- lang: eng
  text: We consider a variety of problems on the interaction between two sets of line
    segments in two and three dimensions. These problems range from counting the number
    of intersecting pairs between m blue segments and n red segments in the plane
    (assuming that two line segments are disjoint if they have the same color) to
    finding the smallest vertical distance between two nonintersecting polyhedral
    terrains in three-dimensional space. We solve these problems efficiently by using
    a variant of the segment tree. For the three-dimensional problems we also apply
    a variety of recent combinatorial and algorithmic techniques involving arrangements
    of lines in three-dimensional space, as developed in a companion paper.
acknowledgement: Supported in part by the National Science Foundation under Grant
  CCR-8714565.
article_processing_charge: No
article_type: original
author:
- first_name: Bernard
  full_name: Chazelle, Bernard
  last_name: Chazelle
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Leonidas
  full_name: Guibas, Leonidas
  last_name: Guibas
- first_name: Micha
  full_name: Sharir, Micha
  last_name: Sharir
citation:
  ama: Chazelle B, Edelsbrunner H, Guibas L, Sharir M. Algorithms for bichromatic
    line-segment problems and polyhedral terrains. <i>Algorithmica</i>. 1994;11(2):116-132.
    doi:<a href="https://doi.org/10.1007/BF01182771">10.1007/BF01182771</a>
  apa: Chazelle, B., Edelsbrunner, H., Guibas, L., &#38; Sharir, M. (1994). Algorithms
    for bichromatic line-segment problems and polyhedral terrains. <i>Algorithmica</i>.
    Springer. <a href="https://doi.org/10.1007/BF01182771">https://doi.org/10.1007/BF01182771</a>
  chicago: Chazelle, Bernard, Herbert Edelsbrunner, Leonidas Guibas, and Micha Sharir.
    “Algorithms for Bichromatic Line-Segment Problems and Polyhedral Terrains.” <i>Algorithmica</i>.
    Springer, 1994. <a href="https://doi.org/10.1007/BF01182771">https://doi.org/10.1007/BF01182771</a>.
  ieee: B. Chazelle, H. Edelsbrunner, L. Guibas, and M. Sharir, “Algorithms for bichromatic
    line-segment problems and polyhedral terrains,” <i>Algorithmica</i>, vol. 11,
    no. 2. Springer, pp. 116–132, 1994.
  ista: Chazelle B, Edelsbrunner H, Guibas L, Sharir M. 1994. Algorithms for bichromatic
    line-segment problems and polyhedral terrains. Algorithmica. 11(2), 116–132.
  mla: Chazelle, Bernard, et al. “Algorithms for Bichromatic Line-Segment Problems
    and Polyhedral Terrains.” <i>Algorithmica</i>, vol. 11, no. 2, Springer, 1994,
    pp. 116–32, doi:<a href="https://doi.org/10.1007/BF01182771">10.1007/BF01182771</a>.
  short: B. Chazelle, H. Edelsbrunner, L. Guibas, M. Sharir, Algorithmica 11 (1994)
    116–132.
date_created: 2018-12-11T12:06:34Z
date_published: 1994-02-01T00:00:00Z
date_updated: 2022-06-02T12:25:29Z
day: '01'
doi: 10.1007/BF01182771
extern: '1'
intvolume: '        11'
issue: '2'
language:
- iso: eng
main_file_link:
- url: https://link.springer.com/article/10.1007/BF01182771
month: '02'
oa_version: None
page: 116 - 132
publication: Algorithmica
publication_identifier:
  issn:
  - 0178-4617
publication_status: published
publisher: Springer
publist_id: '2089'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Algorithms for bichromatic line-segment problems and polyhedral terrains
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 11
year: '1994'
...
---
_id: '4039'
abstract:
- lang: eng
  text: Let P be a simple polygon with n vertices. We present a simple decomposition
    scheme that partitions the interior of P into O(n) so-called geodesic triangles,
    so that any line segment interior to P crosses at most 2 log n of these triangles.
    This decomposition can be used to preprocess P in a very simple manner, so that
    any ray-shooting query can be answered in time O(log n). The data structure requires
    O(n) storage and O(n log n) preprocessing time. By using more sophisticated techniques,
    we can reduce the preprocessing time to O(n). We also extend our general technique
    to the case of ray shooting amidst k polygonal obstacles with a total of n edges,
    so that a query can be answered in O(√ log n) time.
acknowledgement: Work by Bernard Chazelle has been supported by NSF Grant CCR-87-00917.
  Work by Herbert Edelsbrunner has been supported by NSF Grant CCR-89-21421. Work
  by Micha Sharir has been supported by ONR Grants N00014-89-J-3042 and N00014-90-J-1284,
  by NSF Grant CCR-89-01484, and by grants from the U.S.-Israeli Binational Science
  Foundation, the Fund for Basic Research administered by the Israeli Academy of Sciences,
  and the G.I.F., the German-Israeli Foundation for Scientific Research and Development.
article_processing_charge: No
article_type: original
author:
- first_name: Bernard
  full_name: Chazelle, Bernard
  last_name: Chazelle
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Michelangelo
  full_name: Grigni, Michelangelo
  last_name: Grigni
- first_name: Leonidas
  full_name: Guibas, Leonidas
  last_name: Guibas
- first_name: John
  full_name: Hershberger, John
  last_name: Hershberger
- first_name: Micha
  full_name: Sharir, Micha
  last_name: Sharir
- first_name: Jack
  full_name: Snoeyink, Jack
  last_name: Snoeyink
citation:
  ama: Chazelle B, Edelsbrunner H, Grigni M, et al. Ray shooting in polygons using
    geodesic triangulations. <i>Algorithmica</i>. 1994;12(1):54-68. doi:<a href="https://doi.org/10.1007/BF01377183">10.1007/BF01377183</a>
  apa: Chazelle, B., Edelsbrunner, H., Grigni, M., Guibas, L., Hershberger, J., Sharir,
    M., &#38; Snoeyink, J. (1994). Ray shooting in polygons using geodesic triangulations.
    <i>Algorithmica</i>. Springer. <a href="https://doi.org/10.1007/BF01377183">https://doi.org/10.1007/BF01377183</a>
  chicago: Chazelle, Bernard, Herbert Edelsbrunner, Michelangelo Grigni, Leonidas
    Guibas, John Hershberger, Micha Sharir, and Jack Snoeyink. “Ray Shooting in Polygons
    Using Geodesic Triangulations.” <i>Algorithmica</i>. Springer, 1994. <a href="https://doi.org/10.1007/BF01377183">https://doi.org/10.1007/BF01377183</a>.
  ieee: B. Chazelle <i>et al.</i>, “Ray shooting in polygons using geodesic triangulations,”
    <i>Algorithmica</i>, vol. 12, no. 1. Springer, pp. 54–68, 1994.
  ista: Chazelle B, Edelsbrunner H, Grigni M, Guibas L, Hershberger J, Sharir M, Snoeyink
    J. 1994. Ray shooting in polygons using geodesic triangulations. Algorithmica.
    12(1), 54–68.
  mla: Chazelle, Bernard, et al. “Ray Shooting in Polygons Using Geodesic Triangulations.”
    <i>Algorithmica</i>, vol. 12, no. 1, Springer, 1994, pp. 54–68, doi:<a href="https://doi.org/10.1007/BF01377183">10.1007/BF01377183</a>.
  short: B. Chazelle, H. Edelsbrunner, M. Grigni, L. Guibas, J. Hershberger, M. Sharir,
    J. Snoeyink, Algorithmica 12 (1994) 54–68.
date_created: 2018-12-11T12:06:35Z
date_published: 1994-07-01T00:00:00Z
date_updated: 2022-06-02T12:41:07Z
day: '01'
doi: 10.1007/BF01377183
extern: '1'
intvolume: '        12'
issue: '1'
language:
- iso: eng
main_file_link:
- url: https://link.springer.com/article/10.1007/BF01377183
month: '07'
oa_version: None
page: 54 - 68
publication: Algorithmica
publication_identifier:
  issn:
  - 0178-4617
publication_status: published
publisher: Springer
publist_id: '2090'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ray shooting in polygons using geodesic triangulations
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 12
year: '1994'
...
---
_id: '4179'
abstract:
- lang: eng
  text: Neurotrophin-3 (NT-3) is a member of the neurotrophin gene family and is highly
    expressed in the developing rat cerebellum. Here we show that brain-derived neurotrophic
    factor (BDNF) increased by approximately 10-fold the NT-3 mRNA levels in cultured
    cerebellar granule neurons isolated from postnatal rats, whereas nerve growth
    factor (NGF) and NT-3 itself had no effect. The effect of BDNF was additive to
    that of triiodothyronine (T3), which also increased NT-3 mRNA in these neurons.
    The drug K252a inhibited the BDNF-mediated stimulation of NT-3 expression, suggesting
    an involvement of trkB receptors. Nuclear run-on experiments showed that BDNF
    enhanced NT-3 transcription, whereas the stability of NT-3 mRNA remained unchanged.
    The data presented are the first demonstration that one neurotrophin regulates
    the expression of another and provide evidence that NT-3 production in granule
    neurons is regulated by both BDNF and T3.
acknowledgement: We thank Dorothea Stratmann and Karin Angermayer for skillful technical
  assistance.
article_processing_charge: No
article_type: original
author:
- first_name: Axel
  full_name: Leingärtner, Axel
  last_name: Leingärtner
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
- first_name: Roland
  full_name: Kolbeck, Roland
  last_name: Kolbeck
- first_name: Hans
  full_name: Thoenen, Hans
  last_name: Thoenen
- first_name: Dan
  full_name: Lindholm, Dan
  last_name: Lindholm
citation:
  ama: Leingärtner A, Heisenberg C-PJ, Kolbeck R, Thoenen H, Lindholm D. Brain-derived
    neurotrophic factor increases neurotrophin-3 expression in cerebellar granule
    neurons. <i>Journal of Biological Chemistry</i>. 1994;269(2):828-830. doi:<a href="https://doi.org/10.1016/s0021-9258(17)42186-7">10.1016/s0021-9258(17)42186-7</a>
  apa: Leingärtner, A., Heisenberg, C.-P. J., Kolbeck, R., Thoenen, H., &#38; Lindholm,
    D. (1994). Brain-derived neurotrophic factor increases neurotrophin-3 expression
    in cerebellar granule neurons. <i>Journal of Biological Chemistry</i>. American
    Society for Biochemistry and Molecular Biology. <a href="https://doi.org/10.1016/s0021-9258(17)42186-7">https://doi.org/10.1016/s0021-9258(17)42186-7</a>
  chicago: Leingärtner, Axel, Carl-Philipp J Heisenberg, Roland Kolbeck, Hans Thoenen,
    and Dan Lindholm. “Brain-Derived Neurotrophic Factor Increases Neurotrophin-3
    Expression in Cerebellar Granule Neurons.” <i>Journal of Biological Chemistry</i>.
    American Society for Biochemistry and Molecular Biology, 1994. <a href="https://doi.org/10.1016/s0021-9258(17)42186-7">https://doi.org/10.1016/s0021-9258(17)42186-7</a>.
  ieee: A. Leingärtner, C.-P. J. Heisenberg, R. Kolbeck, H. Thoenen, and D. Lindholm,
    “Brain-derived neurotrophic factor increases neurotrophin-3 expression in cerebellar
    granule neurons,” <i>Journal of Biological Chemistry</i>, vol. 269, no. 2. American
    Society for Biochemistry and Molecular Biology, pp. 828–830, 1994.
  ista: Leingärtner A, Heisenberg C-PJ, Kolbeck R, Thoenen H, Lindholm D. 1994. Brain-derived
    neurotrophic factor increases neurotrophin-3 expression in cerebellar granule
    neurons. Journal of Biological Chemistry. 269(2), 828–830.
  mla: Leingärtner, Axel, et al. “Brain-Derived Neurotrophic Factor Increases Neurotrophin-3
    Expression in Cerebellar Granule Neurons.” <i>Journal of Biological Chemistry</i>,
    vol. 269, no. 2, American Society for Biochemistry and Molecular Biology, 1994,
    pp. 828–30, doi:<a href="https://doi.org/10.1016/s0021-9258(17)42186-7">10.1016/s0021-9258(17)42186-7</a>.
  short: A. Leingärtner, C.-P.J. Heisenberg, R. Kolbeck, H. Thoenen, D. Lindholm,
    Journal of Biological Chemistry 269 (1994) 828–830.
date_created: 2018-12-11T12:07:25Z
date_published: 1994-01-14T00:00:00Z
date_updated: 2022-06-02T10:23:48Z
day: '14'
doi: 10.1016/s0021-9258(17)42186-7
extern: '1'
intvolume: '       269'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.sciencedirect.com/science/article/pii/S0021925817421867?via%3Dihub
month: '01'
oa: 1
oa_version: None
page: 828 - 830
publication: Journal of Biological Chemistry
publication_identifier:
  eissn:
  - 1083-351X
  issn:
  - 0021-9258
publication_status: published
publisher: American Society for Biochemistry and Molecular Biology
publist_id: '1941'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Brain-derived neurotrophic factor increases neurotrophin-3 expression in cerebellar
  granule neurons
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 269
year: '1994'
...
---
_id: '4202'
abstract:
- lang: eng
  text: NERVE growth factor (NGF) injected into the otherwise unlesioned adult rat
    septum induced sprouting of presumptive cholinergic fibres positive for p75(NGFR)
    and acetylcholinesterase (AChE). These fibres did not stain for tyrosine hydroxylase
    and therefore did not represent sympathetic ingrowth. Neurofilament staining on
    adjacent sections revealed fibres with similar morphology, suggesting new outgrowth
    in the form of sprouting rather than the upregulation of p75(NGFR) and AChE in
    pre-existing fibres. Simultaneous injections of subneurotoxic doses of N-methyl-D-aspartate
    (NMDA) significantly potentiated the effect of NGF on cholinergic fibre sprouting
    and caused pronounced glial fibrillary acidic protein (GFAP)positive astrocytosis.
    Application of NMDA alone did not elicit sprouting of this type. These findings
    indicate that NGF can induce the sprouting of uninjured adult rat septal cholinergic
    fibres in vivo and suggest that reactive astrocytes are not inhibitory to cholinergic
    axonal outgrowth, and might serve as a substrate for growing axons in the presence
    of NGF.
article_processing_charge: No
article_type: original
author:
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
- first_name: John
  full_name: Cooper, John
  last_name: Cooper
- first_name: J
  full_name: Berke, J
  last_name: Berke
- first_name: Michael
  full_name: Sofroniew, Michael
  last_name: Sofroniew
citation:
  ama: Heisenberg C-PJ, Cooper J, Berke J, Sofroniew M. NMDA potentiates NGF-induced
    sprouting of septal cholinergic fibres. <i>Neuroreport</i>. 1994;5(4):413-416.
    doi:<a href="https://doi.org/10.1097/00001756-199401120-00010 ">10.1097/00001756-199401120-00010
    </a>
  apa: Heisenberg, C.-P. J., Cooper, J., Berke, J., &#38; Sofroniew, M. (1994). NMDA
    potentiates NGF-induced sprouting of septal cholinergic fibres. <i>Neuroreport</i>.
    Lippincott, Williams &#38; Wilkins. <a href="https://doi.org/10.1097/00001756-199401120-00010
    ">https://doi.org/10.1097/00001756-199401120-00010 </a>
  chicago: Heisenberg, Carl-Philipp J, John Cooper, J Berke, and Michael Sofroniew.
    “NMDA Potentiates NGF-Induced Sprouting of Septal Cholinergic Fibres.” <i>Neuroreport</i>.
    Lippincott, Williams &#38; Wilkins, 1994. <a href="https://doi.org/10.1097/00001756-199401120-00010
    ">https://doi.org/10.1097/00001756-199401120-00010 </a>.
  ieee: C.-P. J. Heisenberg, J. Cooper, J. Berke, and M. Sofroniew, “NMDA potentiates
    NGF-induced sprouting of septal cholinergic fibres,” <i>Neuroreport</i>, vol.
    5, no. 4. Lippincott, Williams &#38; Wilkins, pp. 413–416, 1994.
  ista: Heisenberg C-PJ, Cooper J, Berke J, Sofroniew M. 1994. NMDA potentiates NGF-induced
    sprouting of septal cholinergic fibres. Neuroreport. 5(4), 413–416.
  mla: Heisenberg, Carl-Philipp J., et al. “NMDA Potentiates NGF-Induced Sprouting
    of Septal Cholinergic Fibres.” <i>Neuroreport</i>, vol. 5, no. 4, Lippincott,
    Williams &#38; Wilkins, 1994, pp. 413–16, doi:<a href="https://doi.org/10.1097/00001756-199401120-00010
    ">10.1097/00001756-199401120-00010 </a>.
  short: C.-P.J. Heisenberg, J. Cooper, J. Berke, M. Sofroniew, Neuroreport 5 (1994)
    413–416.
date_created: 2018-12-11T12:07:33Z
date_published: 1994-01-12T00:00:00Z
date_updated: 2022-06-02T10:07:25Z
day: '12'
doi: '10.1097/00001756-199401120-00010 '
extern: '1'
intvolume: '         5'
issue: '4'
language:
- iso: eng
main_file_link:
- url: https://journals.lww.com/neuroreport/Abstract/1994/01120/NMDA_potentiates_NGF_induced_sprouting_of_septal.10.aspx
month: '01'
oa_version: None
page: 413 - 416
publication: Neuroreport
publication_identifier:
  issn:
  - 0959-4965
publication_status: published
publisher: Lippincott, Williams & Wilkins
publist_id: '1915'
quality_controlled: '1'
scopus_import: '1'
status: public
title: NMDA potentiates NGF-induced sprouting of septal cholinergic fibres
type: journal_article
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 5
year: '1994'
...
---
_id: '4420'
abstract:
- lang: eng
  text: We propose a methodology for the specification, verification, and design of
    hybrid systems. The methodology consists of the computational model of Concrete
    Phase Transition Systems (cptss), the specification language of Hybrid Temporal
    Logic (htl), the graphical system description language of Hybrid Automata, and
    a proof system for verifying that hybrid automata satisfy their HTL specifications.
    The novelty of the approach lies in the continuous-time logic, which allows specification
    of both point-based and interval-based properties (i.e., properties which describe
    changes over an interval) and provides direct references to derivatives of variables,
    and in the proof system that supports verification of point-based and interval-based
    properties. The proof rules demonstrate that sound and convenient induction rules
    can be established for continuous-time logics. The proof rules are illustrated
    on several examples.
acknowledgement: Supported in part by the National Science Foundation under grants
  CCR-92-23226 and CCR-9200794, by the Defense Advanced Research Projects Agency under
  grants NAG2-703 and NAG2-892, by the United States Air Force Office of Scientific
  Research under contracts F49620-93-1-0139 and F49620-93-1-0056, and by the European
  Community ESPRIT Basic Research Action Project 6021 (REACT). Supported in part by
  a National Science Foundation Graduate Research Fellowship.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Arjun
  full_name: Kapur, Arjun
  last_name: Kapur
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Zohar
  full_name: Manna, Zohar
  last_name: Manna
- first_name: Amir
  full_name: Pnueli, Amir
  last_name: Pnueli
citation:
  ama: 'Kapur A, Henzinger TA, Manna Z, Pnueli A. Proving safety properties of hybrid
    systems. In: <i>3rd International Symposium on Formal Techniques in Real-Time
    and Fault-Tolerant Systems</i>. Vol 863. Springer; 1994:431-454. doi:<a href="https://doi.org/10.1007/3-540-58468-4_177">10.1007/3-540-58468-4_177</a>'
  apa: 'Kapur, A., Henzinger, T. A., Manna, Z., &#38; Pnueli, A. (1994). Proving safety
    properties of hybrid systems. In <i>3rd International Symposium on Formal Techniques
    in Real-Time and Fault-Tolerant Systems</i> (Vol. 863, pp. 431–454). Lübeck, Germany:
    Springer. <a href="https://doi.org/10.1007/3-540-58468-4_177">https://doi.org/10.1007/3-540-58468-4_177</a>'
  chicago: Kapur, Arjun, Thomas A Henzinger, Zohar Manna, and Amir Pnueli. “Proving
    Safety Properties of Hybrid Systems.” In <i>3rd International Symposium on Formal
    Techniques in Real-Time and Fault-Tolerant Systems</i>, 863:431–54. Springer,
    1994. <a href="https://doi.org/10.1007/3-540-58468-4_177">https://doi.org/10.1007/3-540-58468-4_177</a>.
  ieee: A. Kapur, T. A. Henzinger, Z. Manna, and A. Pnueli, “Proving safety properties
    of hybrid systems,” in <i>3rd International Symposium on Formal Techniques in
    Real-Time and Fault-Tolerant Systems</i>, Lübeck, Germany, 1994, vol. 863, pp.
    431–454.
  ista: 'Kapur A, Henzinger TA, Manna Z, Pnueli A. 1994. Proving safety properties
    of hybrid systems. 3rd International Symposium on Formal Techniques in Real-Time
    and Fault-Tolerant Systems. FTRTFT: Formal Techniques in Real-Time and Fault-Tolerant
    Systems, LNCS, vol. 863, 431–454.'
  mla: Kapur, Arjun, et al. “Proving Safety Properties of Hybrid Systems.” <i>3rd
    International Symposium on Formal Techniques in Real-Time and Fault-Tolerant Systems</i>,
    vol. 863, Springer, 1994, pp. 431–54, doi:<a href="https://doi.org/10.1007/3-540-58468-4_177">10.1007/3-540-58468-4_177</a>.
  short: A. Kapur, T.A. Henzinger, Z. Manna, A. Pnueli, in:, 3rd International Symposium
    on Formal Techniques in Real-Time and Fault-Tolerant Systems, Springer, 1994,
    pp. 431–454.
conference:
  end_date: 1994-09-23
  location: Lübeck, Germany
  name: 'FTRTFT: Formal Techniques in Real-Time and Fault-Tolerant Systems'
  start_date: 1994-09-19
date_created: 2018-12-11T12:08:46Z
date_published: 1994-01-01T00:00:00Z
date_updated: 2022-06-02T09:46:37Z
day: '01'
doi: 10.1007/3-540-58468-4_177
extern: '1'
intvolume: '       863'
language:
- iso: eng
main_file_link:
- url: https://link.springer.com/chapter/10.1007/3-540-58468-4_177
month: '01'
oa_version: None
page: 431 - 454
publication: 3rd International Symposium on Formal Techniques in Real-Time and Fault-Tolerant
  Systems
publication_status: published
publisher: Springer
publist_id: '309'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Proving safety properties of hybrid systems
type: conference
user_id: ea97e931-d5af-11eb-85d4-e6957dddbf17
volume: 863
year: '1994'
...
