---
_id: '14683'
abstract:
- lang: eng
  text: "Mosaic analysis with double markers (MADM) technology enables the generation
    of genetic mosaic tissue in mice and high-resolution phenotyping at the individual
    cell level. Here, we present a protocol for isolating MADM-labeled cells with
    high yield for downstream molecular analyses using fluorescence-activated cell
    sorting (FACS). We describe steps for generating MADM-labeled mice, perfusion,
    single-cell suspension, and debris removal. We then detail procedures for cell
    sorting by FACS and downstream analysis. This protocol is suitable for embryonic
    to adult mice.\r\nFor complete details on the use and execution of this protocol,
    please refer to Contreras et al. (2021).1"
acknowledged_ssus:
- _id: Bio
- _id: PreCl
acknowledgement: This research was supported by the Scientific Service Units (SSU)
  at IST Austria through resources provided by the Imaging & Optics Facility (IOF)
  and Preclinical Facilities (PCF). N.A. received support from FWF Firnberg-Programme
  (T 1031). G.C. received support from the European Union’s Horizon 2020 research
  and innovation programme under the Marie Skłodowska-Curie grant agreement no. 754411
  as an ISTplus postdoctoral fellow. This work was also supported by IST Austria institutional
  funds, FWF SFB F78 to S.H., and the European Research Council (ERC) under the European
  Union’s Horizon 2020 research and innovation programme (grant agreement no. 725780
  LinPro) to S.H.
article_number: '102771'
article_processing_charge: No
article_type: review
author:
- first_name: Nicole
  full_name: Amberg, Nicole
  id: 4CD6AAC6-F248-11E8-B48F-1D18A9856A87
  last_name: Amberg
  orcid: 0000-0002-3183-8207
- first_name: Giselle T
  full_name: Cheung, Giselle T
  id: 471195F6-F248-11E8-B48F-1D18A9856A87
  last_name: Cheung
  orcid: 0000-0001-8457-2572
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
citation:
  ama: Amberg N, Cheung GT, Hippenmeyer S. Protocol for sorting cells from mouse brains
    labeled with mosaic analysis with double markers by flow cytometry. <i>STAR Protocols</i>.
    2023;5(1). doi:<a href="https://doi.org/10.1016/j.xpro.2023.102771">10.1016/j.xpro.2023.102771</a>
  apa: Amberg, N., Cheung, G. T., &#38; Hippenmeyer, S. (2023). Protocol for sorting
    cells from mouse brains labeled with mosaic analysis with double markers by flow
    cytometry. <i>STAR Protocols</i>. Elsevier. <a href="https://doi.org/10.1016/j.xpro.2023.102771">https://doi.org/10.1016/j.xpro.2023.102771</a>
  chicago: Amberg, Nicole, Giselle T Cheung, and Simon Hippenmeyer. “Protocol for
    Sorting Cells from Mouse Brains Labeled with Mosaic Analysis with Double Markers
    by Flow Cytometry.” <i>STAR Protocols</i>. Elsevier, 2023. <a href="https://doi.org/10.1016/j.xpro.2023.102771">https://doi.org/10.1016/j.xpro.2023.102771</a>.
  ieee: N. Amberg, G. T. Cheung, and S. Hippenmeyer, “Protocol for sorting cells from
    mouse brains labeled with mosaic analysis with double markers by flow cytometry,”
    <i>STAR Protocols</i>, vol. 5, no. 1. Elsevier, 2023.
  ista: Amberg N, Cheung GT, Hippenmeyer S. 2023. Protocol for sorting cells from
    mouse brains labeled with mosaic analysis with double markers by flow cytometry.
    STAR Protocols. 5(1), 102771.
  mla: Amberg, Nicole, et al. “Protocol for Sorting Cells from Mouse Brains Labeled
    with Mosaic Analysis with Double Markers by Flow Cytometry.” <i>STAR Protocols</i>,
    vol. 5, no. 1, 102771, Elsevier, 2023, doi:<a href="https://doi.org/10.1016/j.xpro.2023.102771">10.1016/j.xpro.2023.102771</a>.
  short: N. Amberg, G.T. Cheung, S. Hippenmeyer, STAR Protocols 5 (2023).
date_created: 2023-12-13T11:48:05Z
date_published: 2023-12-08T00:00:00Z
date_updated: 2023-12-18T08:06:14Z
day: '08'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.1016/j.xpro.2023.102771
ec_funded: 1
external_id:
  pmid:
  - '38070137'
intvolume: '         5'
issue: '1'
keyword:
- General Immunology and Microbiology
- General Biochemistry
- Genetics and Molecular Biology
- General Neuroscience
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.xpro.2023.102771
month: '12'
oa: 1
oa_version: Submitted Version
pmid: 1
project:
- _id: 268F8446-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: T0101031
  name: Role of Eed in neural stem cell lineage progression
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: 059F6AB4-7A3F-11EA-A408-12923DDC885E
  grant_number: F07805
  name: Molecular Mechanisms of Neural Stem Cell Lineage Progression
- _id: 260018B0-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '725780'
  name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
publication: STAR Protocols
publication_identifier:
  issn:
  - 2666-1667
publication_status: epub_ahead
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Protocol for sorting cells from mouse brains labeled with mosaic analysis with
  double markers by flow cytometry
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2023'
...
---
_id: '11336'
abstract:
- lang: eng
  text: The generation of a correctly-sized cerebral cortex with all-embracing neuronal
    and glial cell-type diversity critically depends on faithful radial glial progenitor
    (RGP) cell proliferation/differentiation programs. Temporal RGP lineage progression
    is regulated by Polycomb Repressive Complex 2 (PRC2) and loss of PRC2 activity
    results in severe neurogenesis defects and microcephaly. How PRC2-dependent gene
    expression instructs RGP lineage progression is unknown. Here we utilize Mosaic
    Analysis with Double Markers (MADM)-based single cell technology and demonstrate
    that PRC2 is not cell-autonomously required in neurogenic RGPs but rather acts
    at the global tissue-wide level. Conversely, cortical astrocyte production and
    maturation is cell-autonomously controlled by PRC2-dependent transcriptional regulation.
    We thus reveal highly distinct and sequential PRC2 functions in RGP lineage progression
    that are dependent on complex interplays between intrinsic and tissue-wide properties.
    In a broader context our results imply a critical role for the genetic and cellular
    niche environment in neural stem cell behavior.
acknowledged_ssus:
- _id: PreCl
- _id: Bio
- _id: LifeSc
acknowledgement: We thank A. Heger (IST Austria Preclinical Facility), A. Sommer and
  C. Czepe (VBCF GmbH, NGS  Unit)  and  S.  Gharagozlou  for  technical  support.  This  research  was  supported  by  the  Scientific  Service  Units  (SSU)  of  IST  Austria  through  resources  provided  by  the  Imaging  &  Optics
  Facility (IOF), Lab Support Facility (LSF), and Preclinical Facility (PCF). N.A.
  received funding   from   the   FWF   Firnberg-Programm   (T   1031).   The   work   was   supported   by   IST   institutional  funds  and  by  the  European  Research  Council  (ERC)  under  the  European  Union’s  Horizon
  2020 research and innovation program (grant agreement 725780 LinPro) to S.H.
article_number: abq1263
article_processing_charge: No
article_type: original
author:
- first_name: Nicole
  full_name: Amberg, Nicole
  id: 4CD6AAC6-F248-11E8-B48F-1D18A9856A87
  last_name: Amberg
  orcid: 0000-0002-3183-8207
- first_name: Florian
  full_name: Pauler, Florian
  id: 48EA0138-F248-11E8-B48F-1D18A9856A87
  last_name: Pauler
- first_name: Carmen
  full_name: Streicher, Carmen
  id: 36BCB99C-F248-11E8-B48F-1D18A9856A87
  last_name: Streicher
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
citation:
  ama: Amberg N, Pauler F, Streicher C, Hippenmeyer S. Tissue-wide genetic and cellular
    landscape shapes the execution of sequential PRC2 functions in neural stem cell
    lineage progression. <i>Science Advances</i>. 2022;8(44). doi:<a href="https://doi.org/10.1126/sciadv.abq1263">10.1126/sciadv.abq1263</a>
  apa: Amberg, N., Pauler, F., Streicher, C., &#38; Hippenmeyer, S. (2022). Tissue-wide
    genetic and cellular landscape shapes the execution of sequential PRC2 functions
    in neural stem cell lineage progression. <i>Science Advances</i>. American Association
    for the Advancement of Science. <a href="https://doi.org/10.1126/sciadv.abq1263">https://doi.org/10.1126/sciadv.abq1263</a>
  chicago: Amberg, Nicole, Florian Pauler, Carmen Streicher, and Simon Hippenmeyer.
    “Tissue-Wide Genetic and Cellular Landscape Shapes the Execution of Sequential
    PRC2 Functions in Neural Stem Cell Lineage Progression.” <i>Science Advances</i>.
    American Association for the Advancement of Science, 2022. <a href="https://doi.org/10.1126/sciadv.abq1263">https://doi.org/10.1126/sciadv.abq1263</a>.
  ieee: N. Amberg, F. Pauler, C. Streicher, and S. Hippenmeyer, “Tissue-wide genetic
    and cellular landscape shapes the execution of sequential PRC2 functions in neural
    stem cell lineage progression,” <i>Science Advances</i>, vol. 8, no. 44. American
    Association for the Advancement of Science, 2022.
  ista: Amberg N, Pauler F, Streicher C, Hippenmeyer S. 2022. Tissue-wide genetic
    and cellular landscape shapes the execution of sequential PRC2 functions in neural
    stem cell lineage progression. Science Advances. 8(44), abq1263.
  mla: Amberg, Nicole, et al. “Tissue-Wide Genetic and Cellular Landscape Shapes the
    Execution of Sequential PRC2 Functions in Neural Stem Cell Lineage Progression.”
    <i>Science Advances</i>, vol. 8, no. 44, abq1263, American Association for the
    Advancement of Science, 2022, doi:<a href="https://doi.org/10.1126/sciadv.abq1263">10.1126/sciadv.abq1263</a>.
  short: N. Amberg, F. Pauler, C. Streicher, S. Hippenmeyer, Science Advances 8 (2022).
date_created: 2022-04-26T15:04:50Z
date_published: 2022-11-01T00:00:00Z
date_updated: 2023-05-31T12:24:10Z
day: '01'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.1126/sciadv.abq1263
ec_funded: 1
file:
- access_level: open_access
  checksum: 0117023e188542082ca6693cf39e7f03
  content_type: application/pdf
  creator: patrickd
  date_created: 2023-03-21T14:18:10Z
  date_updated: 2023-03-21T14:18:10Z
  file_id: '12742'
  file_name: sciadv.abq1263.pdf
  file_size: 2973998
  relation: main_file
  success: 1
file_date_updated: 2023-03-21T14:18:10Z
has_accepted_license: '1'
intvolume: '         8'
issue: '44'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
project:
- _id: 260018B0-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '725780'
  name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
- _id: 268F8446-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: T0101031
  name: Role of Eed in neural stem cell lineage progression
publication: Science Advances
publication_identifier:
  issn:
  - 2375-2548
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
related_material:
  link:
  - description: News on ISTA website
    relation: press_release
    url: https://ista.ac.at/en/news/whole-tissue-shapes-brain-development/
scopus_import: '1'
status: public
title: Tissue-wide genetic and cellular landscape shapes the execution of sequential
  PRC2 functions in neural stem cell lineage progression
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2022'
...
---
_id: '10321'
abstract:
- lang: eng
  text: Mosaic analysis with double markers (MADM) technology enables the generation
    of genetic mosaic tissue in mice. MADM enables concomitant fluorescent cell labeling
    and introduction of a mutation of a gene of interest with single-cell resolution.
    This protocol highlights major steps for the generation of genetic mosaic tissue
    and the isolation and processing of respective tissues for downstream histological
    analysis. For complete details on the use and execution of this protocol, please
    refer to Contreras et al. (2021).
acknowledged_ssus:
- _id: Bio
- _id: PreCl
acknowledgement: This research was supported by the Scientific Service Units (SSU)
  at IST Austria through resources provided by the Bioimaging (BIF) and Preclinical
  Facilities (PCF). We particularly thank Mohammad Goudarzi for assistance with photography
  of mouse perfusion and dissection. N.A. received support from FWF Firnberg-Programm
  (T 1031). This work was also supported by IST Austria institutional funds; FWF SFB
  F78 to S.H.; and the European Research Council (ERC) under the European Union’s
  Horizon 2020 research and innovation programme (grant agreement no. 725780 LinPro)
  to S.H.
article_number: '100939'
article_processing_charge: Yes
article_type: original
author:
- first_name: Nicole
  full_name: Amberg, Nicole
  id: 4CD6AAC6-F248-11E8-B48F-1D18A9856A87
  last_name: Amberg
  orcid: 0000-0002-3183-8207
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
citation:
  ama: Amberg N, Hippenmeyer S. Genetic mosaic dissection of candidate genes in mice
    using mosaic analysis with double markers. <i>STAR Protocols</i>. 2021;2(4). doi:<a
    href="https://doi.org/10.1016/j.xpro.2021.100939">10.1016/j.xpro.2021.100939</a>
  apa: Amberg, N., &#38; Hippenmeyer, S. (2021). Genetic mosaic dissection of candidate
    genes in mice using mosaic analysis with double markers. <i>STAR Protocols</i>.
    Cell Press. <a href="https://doi.org/10.1016/j.xpro.2021.100939">https://doi.org/10.1016/j.xpro.2021.100939</a>
  chicago: Amberg, Nicole, and Simon Hippenmeyer. “Genetic Mosaic Dissection of Candidate
    Genes in Mice Using Mosaic Analysis with Double Markers.” <i>STAR Protocols</i>.
    Cell Press, 2021. <a href="https://doi.org/10.1016/j.xpro.2021.100939">https://doi.org/10.1016/j.xpro.2021.100939</a>.
  ieee: N. Amberg and S. Hippenmeyer, “Genetic mosaic dissection of candidate genes
    in mice using mosaic analysis with double markers,” <i>STAR Protocols</i>, vol.
    2, no. 4. Cell Press, 2021.
  ista: Amberg N, Hippenmeyer S. 2021. Genetic mosaic dissection of candidate genes
    in mice using mosaic analysis with double markers. STAR Protocols. 2(4), 100939.
  mla: Amberg, Nicole, and Simon Hippenmeyer. “Genetic Mosaic Dissection of Candidate
    Genes in Mice Using Mosaic Analysis with Double Markers.” <i>STAR Protocols</i>,
    vol. 2, no. 4, 100939, Cell Press, 2021, doi:<a href="https://doi.org/10.1016/j.xpro.2021.100939">10.1016/j.xpro.2021.100939</a>.
  short: N. Amberg, S. Hippenmeyer, STAR Protocols 2 (2021).
date_created: 2021-11-21T23:01:28Z
date_published: 2021-11-10T00:00:00Z
date_updated: 2023-11-16T13:08:03Z
day: '10'
ddc:
- '573'
department:
- _id: SiHi
doi: 10.1016/j.xpro.2021.100939
ec_funded: 1
file:
- access_level: open_access
  checksum: 9e3f6d06bf583e7a8b6a9e9a60500a28
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-11-22T08:23:58Z
  date_updated: 2021-11-22T08:23:58Z
  file_id: '10329'
  file_name: 2021_STARProtocols_Amberg.pdf
  file_size: 7309464
  relation: main_file
  success: 1
file_date_updated: 2021-11-22T08:23:58Z
has_accepted_license: '1'
intvolume: '         2'
issue: '4'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
project:
- _id: 260018B0-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '725780'
  name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
- _id: 268F8446-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: T0101031
  name: Role of Eed in neural stem cell lineage progression
- _id: 059F6AB4-7A3F-11EA-A408-12923DDC885E
  grant_number: F07805
  name: Molecular Mechanisms of Neural Stem Cell Lineage Progression
publication: STAR Protocols
publication_identifier:
  eissn:
  - 2666-1667
publication_status: published
publisher: Cell Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Genetic mosaic dissection of candidate genes in mice using mosaic analysis
  with double markers
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2021'
...
---
_id: '7815'
abstract:
- lang: eng
  text: Beginning from a limited pool of progenitors, the mammalian cerebral cortex
    forms highly organized functional neural circuits. However, the underlying cellular
    and molecular mechanisms regulating lineage transitions of neural stem cells (NSCs)
    and eventual production of neurons and glia in the developing neuroepithelium
    remains unclear. Methods to trace NSC division patterns and map the lineage of
    clonally related cells have advanced dramatically. However, many contemporary
    lineage tracing techniques suffer from the lack of cellular resolution of progeny
    cell fate, which is essential for deciphering progenitor cell division patterns.
    Presented is a protocol using mosaic analysis with double markers (MADM) to perform
    in vivo clonal analysis. MADM concomitantly manipulates individual progenitor
    cells and visualizes precise division patterns and lineage progression at unprecedented
    single cell resolution. MADM-based interchromosomal recombination events during
    the G2-X phase of mitosis, together with temporally inducible CreERT2, provide
    exact information on the birth dates of clones and their division patterns. Thus,
    MADM lineage tracing provides unprecedented qualitative and quantitative optical
    readouts of the proliferation mode of stem cell progenitors at the single cell
    level. MADM also allows for examination of the mechanisms and functional requirements
    of candidate genes in NSC lineage progression. This method is unique in that comparative
    analysis of control and mutant subclones can be performed in the same tissue environment
    in vivo. Here, the protocol is described in detail, and experimental paradigms
    to employ MADM for clonal analysis and lineage tracing in the developing cerebral
    cortex are demonstrated. Importantly, this protocol can be adapted to perform
    MADM clonal analysis in any murine stem cell niche, as long as the CreERT2 driver
    is present.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
- _id: PreCl
article_number: e61147
article_processing_charge: No
article_type: original
author:
- first_name: Robert J
  full_name: Beattie, Robert J
  id: 2E26DF60-F248-11E8-B48F-1D18A9856A87
  last_name: Beattie
  orcid: 0000-0002-8483-8753
- first_name: Carmen
  full_name: Streicher, Carmen
  id: 36BCB99C-F248-11E8-B48F-1D18A9856A87
  last_name: Streicher
- first_name: Nicole
  full_name: Amberg, Nicole
  id: 4CD6AAC6-F248-11E8-B48F-1D18A9856A87
  last_name: Amberg
  orcid: 0000-0002-3183-8207
- first_name: Giselle T
  full_name: Cheung, Giselle T
  id: 471195F6-F248-11E8-B48F-1D18A9856A87
  last_name: Cheung
  orcid: 0000-0001-8457-2572
- first_name: Ximena
  full_name: Contreras, Ximena
  id: 475990FE-F248-11E8-B48F-1D18A9856A87
  last_name: Contreras
- first_name: Andi H
  full_name: Hansen, Andi H
  id: 38853E16-F248-11E8-B48F-1D18A9856A87
  last_name: Hansen
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
citation:
  ama: Beattie RJ, Streicher C, Amberg N, et al. Lineage tracing and clonal analysis
    in developing cerebral cortex using mosaic analysis with double markers (MADM).
    <i>Journal of Visual Experiments</i>. 2020;(159). doi:<a href="https://doi.org/10.3791/61147">10.3791/61147</a>
  apa: Beattie, R. J., Streicher, C., Amberg, N., Cheung, G. T., Contreras, X., Hansen,
    A. H., &#38; Hippenmeyer, S. (2020). Lineage tracing and clonal analysis in developing
    cerebral cortex using mosaic analysis with double markers (MADM). <i>Journal of
    Visual Experiments</i>. MyJove Corporation. <a href="https://doi.org/10.3791/61147">https://doi.org/10.3791/61147</a>
  chicago: Beattie, Robert J, Carmen Streicher, Nicole Amberg, Giselle T Cheung, Ximena
    Contreras, Andi H Hansen, and Simon Hippenmeyer. “Lineage Tracing and Clonal Analysis
    in Developing Cerebral Cortex Using Mosaic Analysis with Double Markers (MADM).”
    <i>Journal of Visual Experiments</i>. MyJove Corporation, 2020. <a href="https://doi.org/10.3791/61147">https://doi.org/10.3791/61147</a>.
  ieee: R. J. Beattie <i>et al.</i>, “Lineage tracing and clonal analysis in developing
    cerebral cortex using mosaic analysis with double markers (MADM),” <i>Journal
    of Visual Experiments</i>, no. 159. MyJove Corporation, 2020.
  ista: Beattie RJ, Streicher C, Amberg N, Cheung GT, Contreras X, Hansen AH, Hippenmeyer
    S. 2020. Lineage tracing and clonal analysis in developing cerebral cortex using
    mosaic analysis with double markers (MADM). Journal of Visual Experiments. (159),
    e61147.
  mla: Beattie, Robert J., et al. “Lineage Tracing and Clonal Analysis in Developing
    Cerebral Cortex Using Mosaic Analysis with Double Markers (MADM).” <i>Journal
    of Visual Experiments</i>, no. 159, e61147, MyJove Corporation, 2020, doi:<a href="https://doi.org/10.3791/61147">10.3791/61147</a>.
  short: R.J. Beattie, C. Streicher, N. Amberg, G.T. Cheung, X. Contreras, A.H. Hansen,
    S. Hippenmeyer, Journal of Visual Experiments (2020).
date_created: 2020-05-11T08:31:20Z
date_published: 2020-05-08T00:00:00Z
date_updated: 2024-03-25T23:30:23Z
day: '08'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.3791/61147
ec_funded: 1
external_id:
  isi:
  - '000546406600043'
file:
- access_level: open_access
  checksum: 3154ea7f90b9fb45e084cd1c2770597d
  content_type: application/pdf
  creator: rbeattie
  date_created: 2020-05-11T08:28:38Z
  date_updated: 2020-07-14T12:48:03Z
  file_id: '7816'
  file_name: jove-protocol-61147-lineage-tracing-clonal-analysis-developing-cerebral-cortex-using.pdf
  file_size: 1352186
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file_date_updated: 2020-07-14T12:48:03Z
has_accepted_license: '1'
isi: 1
issue: '159'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
project:
- _id: 264E56E2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: M02416
  name: Molecular Mechanisms Regulating Gliogenesis in the Cerebral Cortex
- _id: 268F8446-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: T0101031
  name: Role of Eed in neural stem cell lineage progression
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: 2625A13E-B435-11E9-9278-68D0E5697425
  grant_number: '24812'
  name: Molecular Mechanisms of Radial Neuronal Migration
- _id: 260018B0-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '725780'
  name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
publication: Journal of Visual Experiments
publication_identifier:
  issn:
  - 1940-087X
publication_status: published
publisher: MyJove Corporation
quality_controlled: '1'
related_material:
  record:
  - id: '7902'
    relation: part_of_dissertation
    status: public
scopus_import: '1'
status: public
title: Lineage tracing and clonal analysis in developing cerebral cortex using mosaic
  analysis with double markers (MADM)
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '8162'
abstract:
- lang: eng
  text: In mammalian genomes, a subset of genes is regulated by genomic imprinting,
    resulting in silencing of one parental allele. Imprinting is essential for cerebral
    cortex development, but prevalence and functional impact in individual cells is
    unclear. Here, we determined allelic expression in cortical cell types and established
    a quantitative platform to interrogate imprinting in single cells. We created
    cells with uniparental chromosome disomy (UPD) containing two copies of either
    the maternal or the paternal chromosome; hence, imprinted genes will be 2-fold
    overexpressed or not expressed. By genetic labeling of UPD, we determined cellular
    phenotypes and transcriptional responses to deregulated imprinted gene expression
    at unprecedented single-cell resolution. We discovered an unexpected degree of
    cell-type specificity and a novel function of imprinting in the regulation of
    cortical astrocyte survival. More generally, our results suggest functional relevance
    of imprinted gene expression in glial astrocyte lineage and thus for generating
    cortical cell-type diversity.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
- _id: PreCl
acknowledgement: We thank A. Heger (IST Austria Preclinical Facility), A. Sommer and
  C. Czepe (VBCF GmbH, NGS Unit), and A. Seitz and P. Moll (Lexogen GmbH) for technical
  support; G. Arque, S. Resch, C. Igler, C. Dotter, C. Yahya, Q. Hudson, and D. Andergassen
  for initial experiments and/or assistance; D. Barlow, O. Bell, and all members of
  the Hippenmeyer lab for discussion; and N. Barton, B. Vicoso, M. Sixt, and L. Luo
  for comments on earlier versions of the manuscript. This research was supported
  by the Scientific Service Units (SSU) of IST Austria through resources provided
  by the Bioimaging Facilities (BIF), Life Science Facilities (LSF), and Preclinical
  Facilities (PCF). A.H.H. is a recipient of a DOC fellowship (24812) of the Austrian
  Academy of Sciences. N.A. received support from the FWF Firnberg-Programm (T 1031).
  R.B. received support from the FWF Meitner-Programm (M 2416). This work was also
  supported by IST Austria institutional funds; a NÖ Forschung und Bildung n[f+b]
  life science call grant (C13-002) to S.H.; a program grant from the Human Frontiers
  Science Program (RGP0053/2014) to S.H.; the People Programme (Marie Curie Actions)
  of the European Union’s Seventh Framework Programme (FP7/2007-2013) under REA grant
  agreement 618444 to S.H.; and the European Research Council (ERC) under the European
  Union’s Horizon 2020 research and innovation program (grant agreement 725780 LinPro)
  to S.H.
article_processing_charge: No
article_type: original
author:
- first_name: Susanne
  full_name: Laukoter, Susanne
  id: 2D6B7A9A-F248-11E8-B48F-1D18A9856A87
  last_name: Laukoter
  orcid: 0000-0002-7903-3010
- first_name: Florian
  full_name: Pauler, Florian
  id: 48EA0138-F248-11E8-B48F-1D18A9856A87
  last_name: Pauler
  orcid: 0000-0002-7462-0048
- first_name: Robert J
  full_name: Beattie, Robert J
  id: 2E26DF60-F248-11E8-B48F-1D18A9856A87
  last_name: Beattie
  orcid: 0000-0002-8483-8753
- first_name: Nicole
  full_name: Amberg, Nicole
  id: 4CD6AAC6-F248-11E8-B48F-1D18A9856A87
  last_name: Amberg
  orcid: 0000-0002-3183-8207
- first_name: Andi H
  full_name: Hansen, Andi H
  id: 38853E16-F248-11E8-B48F-1D18A9856A87
  last_name: Hansen
- first_name: Carmen
  full_name: Streicher, Carmen
  id: 36BCB99C-F248-11E8-B48F-1D18A9856A87
  last_name: Streicher
- first_name: Thomas
  full_name: Penz, Thomas
  last_name: Penz
- first_name: Christoph
  full_name: Bock, Christoph
  last_name: Bock
  orcid: 0000-0001-6091-3088
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
citation:
  ama: Laukoter S, Pauler F, Beattie RJ, et al. Cell-type specificity of genomic imprinting
    in cerebral cortex. <i>Neuron</i>. 2020;107(6):1160-1179.e9. doi:<a href="https://doi.org/10.1016/j.neuron.2020.06.031">10.1016/j.neuron.2020.06.031</a>
  apa: Laukoter, S., Pauler, F., Beattie, R. J., Amberg, N., Hansen, A. H., Streicher,
    C., … Hippenmeyer, S. (2020). Cell-type specificity of genomic imprinting in cerebral
    cortex. <i>Neuron</i>. Elsevier. <a href="https://doi.org/10.1016/j.neuron.2020.06.031">https://doi.org/10.1016/j.neuron.2020.06.031</a>
  chicago: Laukoter, Susanne, Florian Pauler, Robert J Beattie, Nicole Amberg, Andi
    H Hansen, Carmen Streicher, Thomas Penz, Christoph Bock, and Simon Hippenmeyer.
    “Cell-Type Specificity of Genomic Imprinting in Cerebral Cortex.” <i>Neuron</i>.
    Elsevier, 2020. <a href="https://doi.org/10.1016/j.neuron.2020.06.031">https://doi.org/10.1016/j.neuron.2020.06.031</a>.
  ieee: S. Laukoter <i>et al.</i>, “Cell-type specificity of genomic imprinting in
    cerebral cortex,” <i>Neuron</i>, vol. 107, no. 6. Elsevier, p. 1160–1179.e9, 2020.
  ista: Laukoter S, Pauler F, Beattie RJ, Amberg N, Hansen AH, Streicher C, Penz T,
    Bock C, Hippenmeyer S. 2020. Cell-type specificity of genomic imprinting in cerebral
    cortex. Neuron. 107(6), 1160–1179.e9.
  mla: Laukoter, Susanne, et al. “Cell-Type Specificity of Genomic Imprinting in Cerebral
    Cortex.” <i>Neuron</i>, vol. 107, no. 6, Elsevier, 2020, p. 1160–1179.e9, doi:<a
    href="https://doi.org/10.1016/j.neuron.2020.06.031">10.1016/j.neuron.2020.06.031</a>.
  short: S. Laukoter, F. Pauler, R.J. Beattie, N. Amberg, A.H. Hansen, C. Streicher,
    T. Penz, C. Bock, S. Hippenmeyer, Neuron 107 (2020) 1160–1179.e9.
date_created: 2020-07-23T16:03:12Z
date_published: 2020-09-23T00:00:00Z
date_updated: 2023-08-22T08:20:11Z
day: '23'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.1016/j.neuron.2020.06.031
ec_funded: 1
external_id:
  isi:
  - '000579698700006'
file:
- access_level: open_access
  checksum: 7becdc16a6317304304631087ae7dd7f
  content_type: application/pdf
  creator: dernst
  date_created: 2020-12-02T09:26:46Z
  date_updated: 2020-12-02T09:26:46Z
  file_id: '8828'
  file_name: 2020_Neuron_Laukoter.pdf
  file_size: 8911830
  relation: main_file
  success: 1
file_date_updated: 2020-12-02T09:26:46Z
has_accepted_license: '1'
intvolume: '       107'
isi: 1
issue: '6'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 1160-1179.e9
project:
- _id: 2625A13E-B435-11E9-9278-68D0E5697425
  grant_number: '24812'
  name: Molecular Mechanisms of Radial Neuronal Migration
- _id: 268F8446-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: T0101031
  name: Role of Eed in neural stem cell lineage progression
- _id: 264E56E2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: M02416
  name: Molecular Mechanisms Regulating Gliogenesis in the Cerebral Cortex
- _id: 25D92700-B435-11E9-9278-68D0E5697425
  grant_number: LS13-002
  name: Mapping Cell-Type Specificity of the Genomic Imprintome in the Brain
- _id: 25D7962E-B435-11E9-9278-68D0E5697425
  grant_number: RGP0053/2014
  name: Quantitative Structure-Function Analysis of Cerebral Cortex Assembly at Clonal
    Level
- _id: 25D61E48-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '618444'
  name: Molecular Mechanisms of Cerebral Cortex Development
- _id: 260018B0-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '725780'
  name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
publication: Neuron
publication_identifier:
  issn:
  - 0896-6273
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Website
    relation: press_release
    url: https://ist.ac.at/en/news/cells-react-differently-to-genomic-imprinting/
scopus_import: '1'
status: public
title: Cell-type specificity of genomic imprinting in cerebral cortex
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 107
year: '2020'
...
---
_id: '8978'
abstract:
- lang: eng
  text: "Mosaic analysis with double markers (MADM) technology enables concomitant
    fluorescent cell labeling and induction of uniparental chromosome disomy (UPD)
    with single-cell resolution. In UPD, imprinted genes are either overexpressed
    2-fold or are not expressed. Here, the MADM platform is utilized to probe imprinting
    phenotypes at the transcriptional level. This protocol highlights major steps
    for the generation and isolation of projection neurons and astrocytes with MADM-induced
    UPD from mouse cerebral cortex for downstream single-cell and low-input sample
    RNA-sequencing experiments.\r\n\r\nFor complete details on the use and execution
    of this protocol, please refer to Laukoter et al. (2020b)."
acknowledged_ssus:
- _id: Bio
- _id: PreCl
acknowledgement: This research was supported by the Scientific Service Units (SSU)
  at IST Austria through resources provided by the Bioimaging (BIF) and Preclinical
  Facilities (PCF). N.A received support from the FWF Firnberg-Programm (T 1031).
  This work was also supported by IST Austria institutional funds; FWF SFB F78 to
  S.H.; NÖ Forschung und Bildung n[f+b] life science call grant (C13-002) to S.H.;
  the People Programme (Marie Curie Actions) of the European Union’s Seventh Framework
  Programme (FP7/2007-2013) under REA grant agreement no. 618444 to S.H.; and the
  European Research Council (ERC) under the European Union’s Horizon 2020 research
  and innovation programme (grant agreement no. 725780 LinPro) to S.H.
article_number: '100215'
article_processing_charge: No
article_type: original
author:
- first_name: Susanne
  full_name: Laukoter, Susanne
  id: 2D6B7A9A-F248-11E8-B48F-1D18A9856A87
  last_name: Laukoter
- first_name: Nicole
  full_name: Amberg, Nicole
  id: 4CD6AAC6-F248-11E8-B48F-1D18A9856A87
  last_name: Amberg
  orcid: 0000-0002-3183-8207
- first_name: Florian
  full_name: Pauler, Florian
  id: 48EA0138-F248-11E8-B48F-1D18A9856A87
  last_name: Pauler
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
citation:
  ama: Laukoter S, Amberg N, Pauler F, Hippenmeyer S. Generation and isolation of
    single cells from mouse brain with mosaic analysis with double markers-induced
    uniparental chromosome disomy. <i>STAR Protocols</i>. 2020;1(3). doi:<a href="https://doi.org/10.1016/j.xpro.2020.100215">10.1016/j.xpro.2020.100215</a>
  apa: Laukoter, S., Amberg, N., Pauler, F., &#38; Hippenmeyer, S. (2020). Generation
    and isolation of single cells from mouse brain with mosaic analysis with double
    markers-induced uniparental chromosome disomy. <i>STAR Protocols</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.xpro.2020.100215">https://doi.org/10.1016/j.xpro.2020.100215</a>
  chicago: Laukoter, Susanne, Nicole Amberg, Florian Pauler, and Simon Hippenmeyer.
    “Generation and Isolation of Single Cells from Mouse Brain with Mosaic Analysis
    with Double Markers-Induced Uniparental Chromosome Disomy.” <i>STAR Protocols</i>.
    Elsevier, 2020. <a href="https://doi.org/10.1016/j.xpro.2020.100215">https://doi.org/10.1016/j.xpro.2020.100215</a>.
  ieee: S. Laukoter, N. Amberg, F. Pauler, and S. Hippenmeyer, “Generation and isolation
    of single cells from mouse brain with mosaic analysis with double markers-induced
    uniparental chromosome disomy,” <i>STAR Protocols</i>, vol. 1, no. 3. Elsevier,
    2020.
  ista: Laukoter S, Amberg N, Pauler F, Hippenmeyer S. 2020. Generation and isolation
    of single cells from mouse brain with mosaic analysis with double markers-induced
    uniparental chromosome disomy. STAR Protocols. 1(3), 100215.
  mla: Laukoter, Susanne, et al. “Generation and Isolation of Single Cells from Mouse
    Brain with Mosaic Analysis with Double Markers-Induced Uniparental Chromosome
    Disomy.” <i>STAR Protocols</i>, vol. 1, no. 3, 100215, Elsevier, 2020, doi:<a
    href="https://doi.org/10.1016/j.xpro.2020.100215">10.1016/j.xpro.2020.100215</a>.
  short: S. Laukoter, N. Amberg, F. Pauler, S. Hippenmeyer, STAR Protocols 1 (2020).
date_created: 2020-12-30T10:17:07Z
date_published: 2020-12-18T00:00:00Z
date_updated: 2021-01-12T08:21:36Z
day: '18'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.1016/j.xpro.2020.100215
ec_funded: 1
external_id:
  pmid:
  - '33377108'
file:
- access_level: open_access
  checksum: f1e9a433e9cb0f41f7b6df6b76db1f6e
  content_type: application/pdf
  creator: dernst
  date_created: 2021-01-07T15:57:27Z
  date_updated: 2021-01-07T15:57:27Z
  file_id: '8996'
  file_name: 2020_STARProtocols_Laukoter.pdf
  file_size: 4031449
  relation: main_file
  success: 1
file_date_updated: 2021-01-07T15:57:27Z
has_accepted_license: '1'
intvolume: '         1'
issue: '3'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 268F8446-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: T0101031
  name: Role of Eed in neural stem cell lineage progression
- _id: 059F6AB4-7A3F-11EA-A408-12923DDC885E
  grant_number: F07805
  name: Molecular Mechanisms of Neural Stem Cell Lineage Progression
- _id: 25D92700-B435-11E9-9278-68D0E5697425
  grant_number: LS13-002
  name: Mapping Cell-Type Specificity of the Genomic Imprintome in the Brain
- _id: 25D61E48-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '618444'
  name: Molecular Mechanisms of Cerebral Cortex Development
- _id: 260018B0-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '725780'
  name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
publication: STAR Protocols
publication_identifier:
  issn:
  - 2666-1667
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Generation and isolation of single cells from mouse brain with mosaic analysis
  with double markers-induced uniparental chromosome disomy
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2020'
...
---
_id: '7253'
abstract:
- lang: eng
  text: The cyclin-dependent kinase inhibitor p57KIP2 is encoded by the imprinted
    Cdkn1c locus, exhibits maternal expression, and is essential for cerebral cortex
    development. How Cdkn1c regulates corticogenesis is however not clear. To this
    end we employ Mosaic Analysis with Double Markers (MADM) technology to genetically
    dissect Cdkn1c gene function in corticogenesis at single cell resolution. We find
    that the previously described growth-inhibitory Cdkn1c function is a non-cell-autonomous
    one, acting on the whole organism. In contrast we reveal a growth-promoting cell-autonomous
    Cdkn1c function which at the mechanistic level mediates radial glial progenitor
    cell and nascent projection neuron survival. Strikingly, the growth-promoting
    function of Cdkn1c is highly dosage sensitive but not subject to genomic imprinting.
    Collectively, our results suggest that the Cdkn1c locus regulates cortical development
    through distinct cell-autonomous and non-cell-autonomous mechanisms. More generally,
    our study highlights the importance to probe the relative contributions of cell
    intrinsic gene function and tissue-wide mechanisms to the overall phenotype.
acknowledged_ssus:
- _id: PreCl
article_number: '195'
article_processing_charge: No
article_type: original
author:
- first_name: Susanne
  full_name: Laukoter, Susanne
  id: 2D6B7A9A-F248-11E8-B48F-1D18A9856A87
  last_name: Laukoter
  orcid: 0000-0002-7903-3010
- first_name: Robert J
  full_name: Beattie, Robert J
  id: 2E26DF60-F248-11E8-B48F-1D18A9856A87
  last_name: Beattie
  orcid: 0000-0002-8483-8753
- first_name: Florian
  full_name: Pauler, Florian
  id: 48EA0138-F248-11E8-B48F-1D18A9856A87
  last_name: Pauler
  orcid: 0000-0002-7462-0048
- first_name: Nicole
  full_name: Amberg, Nicole
  id: 4CD6AAC6-F248-11E8-B48F-1D18A9856A87
  last_name: Amberg
  orcid: 0000-0002-3183-8207
- first_name: Keiichi I.
  full_name: Nakayama, Keiichi I.
  last_name: Nakayama
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
citation:
  ama: Laukoter S, Beattie RJ, Pauler F, Amberg N, Nakayama KI, Hippenmeyer S. Imprinted
    Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex
    development. <i>Nature Communications</i>. 2020;11. doi:<a href="https://doi.org/10.1038/s41467-019-14077-2">10.1038/s41467-019-14077-2</a>
  apa: Laukoter, S., Beattie, R. J., Pauler, F., Amberg, N., Nakayama, K. I., &#38;
    Hippenmeyer, S. (2020). Imprinted Cdkn1c genomic locus cell-autonomously promotes
    cell survival in cerebral cortex development. <i>Nature Communications</i>. Springer
    Nature. <a href="https://doi.org/10.1038/s41467-019-14077-2">https://doi.org/10.1038/s41467-019-14077-2</a>
  chicago: Laukoter, Susanne, Robert J Beattie, Florian Pauler, Nicole Amberg, Keiichi
    I. Nakayama, and Simon Hippenmeyer. “Imprinted Cdkn1c Genomic Locus Cell-Autonomously
    Promotes Cell Survival in Cerebral Cortex Development.” <i>Nature Communications</i>.
    Springer Nature, 2020. <a href="https://doi.org/10.1038/s41467-019-14077-2">https://doi.org/10.1038/s41467-019-14077-2</a>.
  ieee: S. Laukoter, R. J. Beattie, F. Pauler, N. Amberg, K. I. Nakayama, and S. Hippenmeyer,
    “Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral
    cortex development,” <i>Nature Communications</i>, vol. 11. Springer Nature, 2020.
  ista: Laukoter S, Beattie RJ, Pauler F, Amberg N, Nakayama KI, Hippenmeyer S. 2020.
    Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral
    cortex development. Nature Communications. 11, 195.
  mla: Laukoter, Susanne, et al. “Imprinted Cdkn1c Genomic Locus Cell-Autonomously
    Promotes Cell Survival in Cerebral Cortex Development.” <i>Nature Communications</i>,
    vol. 11, 195, Springer Nature, 2020, doi:<a href="https://doi.org/10.1038/s41467-019-14077-2">10.1038/s41467-019-14077-2</a>.
  short: S. Laukoter, R.J. Beattie, F. Pauler, N. Amberg, K.I. Nakayama, S. Hippenmeyer,
    Nature Communications 11 (2020).
date_created: 2020-01-11T10:42:48Z
date_published: 2020-01-10T00:00:00Z
date_updated: 2023-08-17T14:23:41Z
day: '10'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.1038/s41467-019-14077-2
ec_funded: 1
external_id:
  isi:
  - '000551459000005'
file:
- access_level: open_access
  checksum: ebf1ed522f4e0be8d94c939c1806a709
  content_type: application/pdf
  creator: dernst
  date_created: 2020-01-13T07:42:31Z
  date_updated: 2020-07-14T12:47:54Z
  file_id: '7261'
  file_name: 2020_NatureComm_Laukoter.pdf
  file_size: 8063333
  relation: main_file
file_date_updated: 2020-07-14T12:47:54Z
has_accepted_license: '1'
intvolume: '        11'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 268F8446-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: T0101031
  name: Role of Eed in neural stem cell lineage progression
- _id: 264E56E2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: M02416
  name: Molecular Mechanisms Regulating Gliogenesis in the Cerebral Cortex
- _id: 260018B0-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '725780'
  name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
- _id: 25D92700-B435-11E9-9278-68D0E5697425
  grant_number: LS13-002
  name: Mapping Cell-Type Specificity of the Genomic Imprintome in the Brain
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/new-function-for-potential-tumour-suppressor-in-brain-development/
scopus_import: '1'
status: public
title: Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in
  cerebral cortex development
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2020'
...
---
_id: '6455'
abstract:
- lang: eng
  text: During corticogenesis, distinct subtypes of neurons are sequentially born
    from ventricular zone progenitors. How these cells are molecularly temporally
    patterned is poorly understood. We used single-cell RNA sequencing at high temporal
    resolution to trace the lineage of the molecular identities of successive generations
    of apical progenitors (APs) and their daughter neurons in mouse embryos. We identified
    a core set of evolutionarily conserved, temporally patterned genes that drive
    APs from internally driven to more exteroceptive states. We found that the Polycomb
    repressor complex 2 (PRC2) epigenetically regulates AP temporal progression. Embryonic
    age–dependent AP molecular states are transmitted to their progeny as successive
    ground states, onto which essentially conserved early postmitotic differentiation
    programs are applied, and are complemented by later-occurring environment-dependent
    signals. Thus, epigenetically regulated temporal molecular birthmarks present
    in progenitors act in their postmitotic progeny to seed adult neuronal diversity.
article_number: eaav2522
article_processing_charge: No
article_type: original
author:
- first_name: L
  full_name: Telley, L
  last_name: Telley
- first_name: G
  full_name: Agirman, G
  last_name: Agirman
- first_name: J
  full_name: Prados, J
  last_name: Prados
- first_name: Nicole
  full_name: Amberg, Nicole
  id: 4CD6AAC6-F248-11E8-B48F-1D18A9856A87
  last_name: Amberg
  orcid: 0000-0002-3183-8207
- first_name: S
  full_name: Fièvre, S
  last_name: Fièvre
- first_name: P
  full_name: Oberst, P
  last_name: Oberst
- first_name: G
  full_name: Bartolini, G
  last_name: Bartolini
- first_name: I
  full_name: Vitali, I
  last_name: Vitali
- first_name: C
  full_name: Cadilhac, C
  last_name: Cadilhac
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
- first_name: L
  full_name: Nguyen, L
  last_name: Nguyen
- first_name: A
  full_name: Dayer, A
  last_name: Dayer
- first_name: D
  full_name: Jabaudon, D
  last_name: Jabaudon
citation:
  ama: Telley L, Agirman G, Prados J, et al. Temporal patterning of apical progenitors
    and their daughter neurons in the developing neocortex. <i>Science</i>. 2019;364(6440).
    doi:<a href="https://doi.org/10.1126/science.aav2522">10.1126/science.aav2522</a>
  apa: Telley, L., Agirman, G., Prados, J., Amberg, N., Fièvre, S., Oberst, P., …
    Jabaudon, D. (2019). Temporal patterning of apical progenitors and their daughter
    neurons in the developing neocortex. <i>Science</i>. AAAS. <a href="https://doi.org/10.1126/science.aav2522">https://doi.org/10.1126/science.aav2522</a>
  chicago: Telley, L, G Agirman, J Prados, Nicole Amberg, S Fièvre, P Oberst, G Bartolini,
    et al. “Temporal Patterning of Apical Progenitors and Their Daughter Neurons in
    the Developing Neocortex.” <i>Science</i>. AAAS, 2019. <a href="https://doi.org/10.1126/science.aav2522">https://doi.org/10.1126/science.aav2522</a>.
  ieee: L. Telley <i>et al.</i>, “Temporal patterning of apical progenitors and their
    daughter neurons in the developing neocortex,” <i>Science</i>, vol. 364, no. 6440.
    AAAS, 2019.
  ista: Telley L, Agirman G, Prados J, Amberg N, Fièvre S, Oberst P, Bartolini G,
    Vitali I, Cadilhac C, Hippenmeyer S, Nguyen L, Dayer A, Jabaudon D. 2019. Temporal
    patterning of apical progenitors and their daughter neurons in the developing
    neocortex. Science. 364(6440), eaav2522.
  mla: Telley, L., et al. “Temporal Patterning of Apical Progenitors and Their Daughter
    Neurons in the Developing Neocortex.” <i>Science</i>, vol. 364, no. 6440, eaav2522,
    AAAS, 2019, doi:<a href="https://doi.org/10.1126/science.aav2522">10.1126/science.aav2522</a>.
  short: L. Telley, G. Agirman, J. Prados, N. Amberg, S. Fièvre, P. Oberst, G. Bartolini,
    I. Vitali, C. Cadilhac, S. Hippenmeyer, L. Nguyen, A. Dayer, D. Jabaudon, Science
    364 (2019).
date_created: 2019-05-14T13:07:47Z
date_published: 2019-05-10T00:00:00Z
date_updated: 2023-09-05T11:51:09Z
day: '10'
department:
- _id: SiHi
doi: 10.1126/science.aav2522
ec_funded: 1
external_id:
  isi:
  - '000467631800034'
  pmid:
  - '31073041'
intvolume: '       364'
isi: 1
issue: '6440'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://orbi.uliege.be/bitstream/2268/239604/1/Telley_Agirman_Science2019.pdf
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 260018B0-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '725780'
  name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
- _id: 268F8446-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: T0101031
  name: Role of Eed in neural stem cell lineage progression
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: AAAS
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/how-to-generate-a-brain-of-correct-size-and-composition/
scopus_import: '1'
status: public
title: Temporal patterning of apical progenitors and their daughter neurons in the
  developing neocortex
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 364
year: '2019'
...
