---
_id: '10888'
abstract:
- lang: eng
  text: Despite the growing interest in using chemical genetics in plant research,
    small molecule target identification remains a major challenge. The cellular thermal
    shift assay coupled with high-resolution mass spectrometry (CETSA MS) that monitors
    changes in the thermal stability of proteins caused by their interactions with
    small molecules, other proteins, or posttranslational modifications, allows the
    discovery of drug targets or the study of protein–metabolite and protein–protein
    interactions mainly in mammalian cells. To showcase the applicability of this
    method in plants, we applied CETSA MS to intact Arabidopsis thaliana cells and
    identified the thermal proteome of the plant-specific glycogen synthase kinase
    3 (GSK3) inhibitor, bikinin. A comparison between the thermal and the phosphoproteomes
    of bikinin revealed the auxin efflux carrier PIN-FORMED1 (PIN1) as a substrate
    of the Arabidopsis GSK3s that negatively regulate the brassinosteroid signaling.
    We established that PIN1 phosphorylation by the GSK3s is essential for maintaining
    its intracellular polarity that is required for auxin-mediated regulation of vascular
    patterning in the leaf, thus revealing cross-talk between brassinosteroid and
    auxin signaling.
acknowledgement: "We thank Yanhai Yin for providing the anti-BES1 antibody, Johan
  Winne and Brenda Callebaut for synthesizing bikinin, Yuki Kondo and Hiroo Fukuda
  for published materials, Tomasz Nodzy\x03nski for useful advice, and Martine De
  Cock for help in preparing the manuscript. This\r\nwork was supported by the China
  Scholarship Council for predoctoral (Q.L. and X.X.) and postdoctoral (Y.Z.) fellowships;
  the Agency for Innovation by Science and Technology for a predoctoral fellowship
  (W.D.); the Research Foundation-Flanders, Projects G009018N and G002121N (E.R.);
  and the VIB TechWatch Fund (E.R.)."
article_number: e2118220119
article_processing_charge: No
article_type: original
author:
- first_name: Qing
  full_name: Lu, Qing
  last_name: Lu
- first_name: Yonghong
  full_name: Zhang, Yonghong
  last_name: Zhang
- first_name: Joakim
  full_name: Hellner, Joakim
  last_name: Hellner
- first_name: Caterina
  full_name: Giannini, Caterina
  id: e3fdddd5-f6e0-11ea-865d-ca99ee6367f4
  last_name: Giannini
- first_name: Xiangyu
  full_name: Xu, Xiangyu
  last_name: Xu
- first_name: Jarne
  full_name: Pauwels, Jarne
  last_name: Pauwels
- first_name: Qian
  full_name: Ma, Qian
  last_name: Ma
- first_name: Wim
  full_name: Dejonghe, Wim
  last_name: Dejonghe
- first_name: Huibin
  full_name: Han, Huibin
  id: 31435098-F248-11E8-B48F-1D18A9856A87
  last_name: Han
- first_name: Brigitte
  full_name: Van De Cotte, Brigitte
  last_name: Van De Cotte
- first_name: Francis
  full_name: Impens, Francis
  last_name: Impens
- first_name: Kris
  full_name: Gevaert, Kris
  last_name: Gevaert
- first_name: Ive
  full_name: De Smet, Ive
  last_name: De Smet
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Daniel Martinez
  full_name: Molina, Daniel Martinez
  last_name: Molina
- first_name: Eugenia
  full_name: Russinova, Eugenia
  last_name: Russinova
citation:
  ama: Lu Q, Zhang Y, Hellner J, et al. Proteome-wide cellular thermal shift assay
    reveals unexpected cross-talk between brassinosteroid and auxin signaling. <i>Proceedings
    of the National Academy of Sciences of the United States of America</i>. 2022;119(11).
    doi:<a href="https://doi.org/10.1073/pnas.2118220119">10.1073/pnas.2118220119</a>
  apa: Lu, Q., Zhang, Y., Hellner, J., Giannini, C., Xu, X., Pauwels, J., … Russinova,
    E. (2022). Proteome-wide cellular thermal shift assay reveals unexpected cross-talk
    between brassinosteroid and auxin signaling. <i>Proceedings of the National Academy
    of Sciences of the United States of America</i>. Proceedings of the National Academy
    of Sciences. <a href="https://doi.org/10.1073/pnas.2118220119">https://doi.org/10.1073/pnas.2118220119</a>
  chicago: Lu, Qing, Yonghong Zhang, Joakim Hellner, Caterina Giannini, Xiangyu Xu,
    Jarne Pauwels, Qian Ma, et al. “Proteome-Wide Cellular Thermal Shift Assay Reveals Unexpected
    Cross-Talk between Brassinosteroid and Auxin Signaling.” <i>Proceedings of the
    National Academy of Sciences of the United States of America</i>. Proceedings
    of the National Academy of Sciences, 2022. <a href="https://doi.org/10.1073/pnas.2118220119">https://doi.org/10.1073/pnas.2118220119</a>.
  ieee: Q. Lu <i>et al.</i>, “Proteome-wide cellular thermal shift assay reveals unexpected
    cross-talk between brassinosteroid and auxin signaling,” <i>Proceedings of the
    National Academy of Sciences of the United States of America</i>, vol. 119, no.
    11. Proceedings of the National Academy of Sciences, 2022.
  ista: Lu Q, Zhang Y, Hellner J, Giannini C, Xu X, Pauwels J, Ma Q, Dejonghe W, Han
    H, Van De Cotte B, Impens F, Gevaert K, De Smet I, Friml J, Molina DM, Russinova
    E. 2022. Proteome-wide cellular thermal shift assay reveals unexpected cross-talk
    between brassinosteroid and auxin signaling. Proceedings of the National Academy
    of Sciences of the United States of America. 119(11), e2118220119.
  mla: Lu, Qing, et al. “Proteome-Wide Cellular Thermal Shift Assay Reveals Unexpected
    Cross-Talk between Brassinosteroid and Auxin Signaling.” <i>Proceedings of the
    National Academy of Sciences of the United States of America</i>, vol. 119, no.
    11, e2118220119, Proceedings of the National Academy of Sciences, 2022, doi:<a
    href="https://doi.org/10.1073/pnas.2118220119">10.1073/pnas.2118220119</a>.
  short: Q. Lu, Y. Zhang, J. Hellner, C. Giannini, X. Xu, J. Pauwels, Q. Ma, W. Dejonghe,
    H. Han, B. Van De Cotte, F. Impens, K. Gevaert, I. De Smet, J. Friml, D.M. Molina,
    E. Russinova, Proceedings of the National Academy of Sciences of the United States
    of America 119 (2022).
date_created: 2022-03-20T23:01:39Z
date_published: 2022-03-07T00:00:00Z
date_updated: 2023-08-03T06:06:27Z
day: '07'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1073/pnas.2118220119
external_id:
  isi:
  - '000771756300008'
  pmid:
  - '35254915'
file:
- access_level: open_access
  checksum: 83e0fea7919570d0b519b41193342571
  content_type: application/pdf
  creator: dernst
  date_created: 2022-03-21T09:19:47Z
  date_updated: 2022-03-21T09:19:47Z
  file_id: '10910'
  file_name: 2022_PNAS_Lu.pdf
  file_size: 2169534
  relation: main_file
  success: 1
file_date_updated: 2022-03-21T09:19:47Z
has_accepted_license: '1'
intvolume: '       119'
isi: 1
issue: '11'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: Proceedings of the National Academy of Sciences of the United States
  of America
publication_identifier:
  eissn:
  - 1091-6490
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Proteome-wide cellular thermal shift assay reveals unexpected cross-talk between
  brassinosteroid and auxin signaling
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 119
year: '2022'
...
---
_id: '13240'
abstract:
- lang: eng
  text: Ustilago maydis is a biotrophic phytopathogenic fungus that causes corn smut
    disease. As a well-established model system, U. maydis is genetically fully accessible
    with large omics datasets available and subject to various biological questions
    ranging from DNA-repair, RNA-transport, and protein secretion to disease biology.
    For many genetic approaches, tight control of transgene regulation is important.
    Here we established an optimised version of the Tetracycline-ON (TetON) system
    for U. maydis. We demonstrate the Tetracycline concentration-dependent expression
    of fluorescent protein transgenes and the system’s suitability for the induced
    expression of the toxic protein BCL2 Associated X-1 (Bax1). The Golden Gate compatible
    vector system contains a native minimal promoter from the mating factor a-1 encoding
    gene, mfa with ten copies of the tet-regulated operator (tetO) and a codon optimised
    Tet-repressor (tetR*) which is translationally fused to the native transcriptional
    corepressor Mql1 (UMAG_05501). The metabolism-independent transcriptional regulator
    system is functional both, in liquid culture as well as on solid media in the
    presence of the inducer and can become a useful tool for toxin-antitoxin studies,
    identification of antifungal proteins, and to study functions of toxic gene products
    in Ustilago maydis.
acknowledgement: "The research leading to these results received funding from the
  European Research Council under the European Union’s Seventh Framework Programme
  ERC-2013-STG (grant agreement: 335691), the Austrian Science Fund (I 3033-B22),
  the Austrian Academy of Sciences, and the Deutsche Forschungsgemeinschaft (DFG,
  German Research Foundation) under Germany's Excellence Strategy EXC-2070-390732324
  (PhenoRob) and DFG grant (DJ 64/5-1).\r\nWe would like to thank the GMI/IMBA/IMP
  core facilities for their excellent technical support. We would like to acknowledge
  Dr. Sinéad A. O’Sullivan from DZNE, University of Bonn for providing anti-GFP antibodies.
  The authors are thankful to the Excellence University of Bonn for providing infrastructure
  and instrumentation facilities at the INRES-Plant Pathology department."
article_number: '1029114'
article_processing_charge: Yes
article_type: original
author:
- first_name: Kishor D.
  full_name: Ingole, Kishor D.
  last_name: Ingole
- first_name: Nithya
  full_name: Nagarajan, Nithya
  last_name: Nagarajan
- first_name: Simon
  full_name: Uhse, Simon
  last_name: Uhse
- first_name: Caterina
  full_name: Giannini, Caterina
  id: e3fdddd5-f6e0-11ea-865d-ca99ee6367f4
  last_name: Giannini
- first_name: Armin
  full_name: Djamei, Armin
  last_name: Djamei
citation:
  ama: Ingole KD, Nagarajan N, Uhse S, Giannini C, Djamei A. Tetracycline-controlled
    (TetON) gene expression system for the smut fungus Ustilago maydis. <i>Frontiers
    in Fungal Biology</i>. 2022;3. doi:<a href="https://doi.org/10.3389/ffunb.2022.1029114">10.3389/ffunb.2022.1029114</a>
  apa: Ingole, K. D., Nagarajan, N., Uhse, S., Giannini, C., &#38; Djamei, A. (2022).
    Tetracycline-controlled (TetON) gene expression system for the smut fungus Ustilago
    maydis. <i>Frontiers in Fungal Biology</i>. Frontiers Media. <a href="https://doi.org/10.3389/ffunb.2022.1029114">https://doi.org/10.3389/ffunb.2022.1029114</a>
  chicago: Ingole, Kishor D., Nithya Nagarajan, Simon Uhse, Caterina Giannini, and
    Armin Djamei. “Tetracycline-Controlled (TetON) Gene Expression System for the
    Smut Fungus Ustilago Maydis.” <i>Frontiers in Fungal Biology</i>. Frontiers Media,
    2022. <a href="https://doi.org/10.3389/ffunb.2022.1029114">https://doi.org/10.3389/ffunb.2022.1029114</a>.
  ieee: K. D. Ingole, N. Nagarajan, S. Uhse, C. Giannini, and A. Djamei, “Tetracycline-controlled
    (TetON) gene expression system for the smut fungus Ustilago maydis,” <i>Frontiers
    in Fungal Biology</i>, vol. 3. Frontiers Media, 2022.
  ista: Ingole KD, Nagarajan N, Uhse S, Giannini C, Djamei A. 2022. Tetracycline-controlled
    (TetON) gene expression system for the smut fungus Ustilago maydis. Frontiers
    in Fungal Biology. 3, 1029114.
  mla: Ingole, Kishor D., et al. “Tetracycline-Controlled (TetON) Gene Expression
    System for the Smut Fungus Ustilago Maydis.” <i>Frontiers in Fungal Biology</i>,
    vol. 3, 1029114, Frontiers Media, 2022, doi:<a href="https://doi.org/10.3389/ffunb.2022.1029114">10.3389/ffunb.2022.1029114</a>.
  short: K.D. Ingole, N. Nagarajan, S. Uhse, C. Giannini, A. Djamei, Frontiers in
    Fungal Biology 3 (2022).
date_created: 2023-07-16T22:01:12Z
date_published: 2022-10-19T00:00:00Z
date_updated: 2024-03-06T14:01:57Z
day: '19'
ddc:
- '579'
department:
- _id: JiFr
doi: 10.3389/ffunb.2022.1029114
file:
- access_level: open_access
  checksum: 2254e0119c0749d6f7237084fefcece6
  content_type: application/pdf
  creator: dernst
  date_created: 2023-07-17T11:46:34Z
  date_updated: 2023-07-17T11:46:34Z
  file_id: '13242'
  file_name: 2023_FrontiersFungalBio_Ingole.pdf
  file_size: 27966699
  relation: main_file
  success: 1
file_date_updated: 2023-07-17T11:46:34Z
has_accepted_license: '1'
intvolume: '         3'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
publication: Frontiers in Fungal Biology
publication_identifier:
  eissn:
  - 2673-6128
publication_status: published
publisher: Frontiers Media
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tetracycline-controlled (TetON) gene expression system for the smut fungus
  Ustilago maydis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2022'
...
---
_id: '12121'
abstract:
- lang: eng
  text: Autophagosomes are double-membraned vesicles that traffic harmful or unwanted
    cellular macromolecules to the vacuole for recycling. Although autophagosome biogenesis
    has been extensively studied, autophagosome maturation, i.e., delivery and fusion
    with the vacuole, remains largely unknown in plants. Here, we have identified
    an autophagy adaptor, CFS1, that directly interacts with the autophagosome marker
    ATG8 and localizes on both membranes of the autophagosome. Autophagosomes form
    normally in Arabidopsis thaliana cfs1 mutants, but their delivery to the vacuole
    is disrupted. CFS1’s function is evolutionarily conserved in plants, as it also
    localizes to the autophagosomes and plays a role in autophagic flux in the liverwort
    Marchantia polymorpha. CFS1 regulates autophagic flux by bridging autophagosomes
    with the multivesicular body-localized ESCRT-I component VPS23A, leading to the
    formation of amphisomes. Similar to CFS1-ATG8 interaction, disrupting the CFS1-VPS23A
    interaction blocks autophagic flux and renders plants sensitive to nitrogen starvation.
    Altogether, our results reveal a conserved vacuolar sorting hub that regulates
    autophagic flux in plants.
acknowledgement: "We thank Suayip Ustün, Karin Schumacher, Erika Isono, Gerd Juergens,
  Takashi Ueda, Daniel Hofius, and Liwen Jiang for sharing published materials.\r\nWe
  acknowledge funding from Austrian Academy of Sciences, Austrian Science Fund (FWF,
  P 32355, P 34944), Austrian Science Fund (FWF-SFB F79), Vienna Science and Technology\r\nFund
  (WWTF, LS17-047) to Y. Dagdas; Austrian Academy of Sciences DOC Fellowship to J.
  Zhao, Marie Curie VIP2 Fellowship to J.C. De La Concepcion and M. Clavel; Hong Kong
  Research Grant Council (GRF14121019, 14113921, AoE/M-05/12, C4002-17G) to B.-H.
  Kang. We thank Vienna Biocenter Core Facilities (VBCF) Protein Chemistry, Biooptics,
  Plant Sciences, Molecular Biology, and Protein Technologies. We thank J. Matthew
  Watson\r\nand members of the Dagdas lab for the critical reading and editing of
  the manuscript."
article_number: e202203139
article_processing_charge: No
article_type: original
author:
- first_name: Jierui
  full_name: Zhao, Jierui
  last_name: Zhao
- first_name: Mai Thu
  full_name: Bui, Mai Thu
  last_name: Bui
- first_name: Juncai
  full_name: Ma, Juncai
  last_name: Ma
- first_name: Fabian
  full_name: Künzl, Fabian
  last_name: Künzl
- first_name: Lorenzo
  full_name: Picchianti, Lorenzo
  last_name: Picchianti
- first_name: Juan Carlos
  full_name: De La Concepcion, Juan Carlos
  last_name: De La Concepcion
- first_name: Yixuan
  full_name: Chen, Yixuan
  last_name: Chen
- first_name: Sofia
  full_name: Petsangouraki, Sofia
  last_name: Petsangouraki
- first_name: Azadeh
  full_name: Mohseni, Azadeh
  last_name: Mohseni
- first_name: Marta
  full_name: García-Leon, Marta
  last_name: García-Leon
- first_name: Marta Salas
  full_name: Gomez, Marta Salas
  last_name: Gomez
- first_name: Caterina
  full_name: Giannini, Caterina
  id: e3fdddd5-f6e0-11ea-865d-ca99ee6367f4
  last_name: Giannini
- first_name: Dubois
  full_name: Gwennogan, Dubois
  last_name: Gwennogan
- first_name: Roksolana
  full_name: Kobylinska, Roksolana
  last_name: Kobylinska
- first_name: Marion
  full_name: Clavel, Marion
  last_name: Clavel
- first_name: Swen
  full_name: Schellmann, Swen
  last_name: Schellmann
- first_name: Yvon
  full_name: Jaillais, Yvon
  last_name: Jaillais
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Byung-Ho
  full_name: Kang, Byung-Ho
  last_name: Kang
- first_name: Yasin
  full_name: Dagdas, Yasin
  last_name: Dagdas
citation:
  ama: Zhao J, Bui MT, Ma J, et al. Plant autophagosomes mature into amphisomes prior
    to their delivery to the central vacuole. <i>Journal of Cell Biology</i>. 2022;221(12).
    doi:<a href="https://doi.org/10.1083/jcb.202203139">10.1083/jcb.202203139</a>
  apa: Zhao, J., Bui, M. T., Ma, J., Künzl, F., Picchianti, L., De La Concepcion,
    J. C., … Dagdas, Y. (2022). Plant autophagosomes mature into amphisomes prior
    to their delivery to the central vacuole. <i>Journal of Cell Biology</i>. Rockefeller
    University Press. <a href="https://doi.org/10.1083/jcb.202203139">https://doi.org/10.1083/jcb.202203139</a>
  chicago: Zhao, Jierui, Mai Thu Bui, Juncai Ma, Fabian Künzl, Lorenzo Picchianti,
    Juan Carlos De La Concepcion, Yixuan Chen, et al. “Plant Autophagosomes Mature
    into Amphisomes Prior to Their Delivery to the Central Vacuole.” <i>Journal of
    Cell Biology</i>. Rockefeller University Press, 2022. <a href="https://doi.org/10.1083/jcb.202203139">https://doi.org/10.1083/jcb.202203139</a>.
  ieee: J. Zhao <i>et al.</i>, “Plant autophagosomes mature into amphisomes prior
    to their delivery to the central vacuole,” <i>Journal of Cell Biology</i>, vol.
    221, no. 12. Rockefeller University Press, 2022.
  ista: Zhao J, Bui MT, Ma J, Künzl F, Picchianti L, De La Concepcion JC, Chen Y,
    Petsangouraki S, Mohseni A, García-Leon M, Gomez MS, Giannini C, Gwennogan D,
    Kobylinska R, Clavel M, Schellmann S, Jaillais Y, Friml J, Kang B-H, Dagdas Y.
    2022. Plant autophagosomes mature into amphisomes prior to their delivery to the
    central vacuole. Journal of Cell Biology. 221(12), e202203139.
  mla: Zhao, Jierui, et al. “Plant Autophagosomes Mature into Amphisomes Prior to
    Their Delivery to the Central Vacuole.” <i>Journal of Cell Biology</i>, vol. 221,
    no. 12, e202203139, Rockefeller University Press, 2022, doi:<a href="https://doi.org/10.1083/jcb.202203139">10.1083/jcb.202203139</a>.
  short: J. Zhao, M.T. Bui, J. Ma, F. Künzl, L. Picchianti, J.C. De La Concepcion,
    Y. Chen, S. Petsangouraki, A. Mohseni, M. García-Leon, M.S. Gomez, C. Giannini,
    D. Gwennogan, R. Kobylinska, M. Clavel, S. Schellmann, Y. Jaillais, J. Friml,
    B.-H. Kang, Y. Dagdas, Journal of Cell Biology 221 (2022).
date_created: 2023-01-12T11:57:10Z
date_published: 2022-12-01T00:00:00Z
date_updated: 2023-08-03T14:20:15Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1083/jcb.202203139
external_id:
  isi:
  - '000932958800001'
  pmid:
  - '36260289'
file:
- access_level: open_access
  checksum: 050b5cc4b25e6b94fe3e3cbfe0f5c06b
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-23T10:30:11Z
  date_updated: 2023-01-23T10:30:11Z
  file_id: '12342'
  file_name: 2022_JCB_Zhao.pdf
  file_size: 10365777
  relation: main_file
  success: 1
file_date_updated: 2023-01-23T10:30:11Z
has_accepted_license: '1'
intvolume: '       221'
isi: 1
issue: '12'
keyword:
- Cell Biology
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Plant autophagosomes mature into amphisomes prior to their delivery to the
  central vacuole
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 221
year: '2022'
...
---
_id: '12291'
abstract:
- lang: eng
  text: The phytohormone auxin triggers transcriptional reprogramming through a well-characterized
    perception machinery in the nucleus. By contrast, mechanisms that underlie fast
    effects of auxin, such as the regulation of ion fluxes, rapid phosphorylation
    of proteins or auxin feedback on its transport, remain unclear1,2,3. Whether auxin-binding
    protein 1 (ABP1) is an auxin receptor has been a source of debate for decades1,4.
    Here we show that a fraction of Arabidopsis thaliana ABP1 is secreted and binds
    auxin specifically at an acidic pH that is typical of the apoplast. ABP1 and its
    plasma-membrane-localized partner, transmembrane kinase 1 (TMK1), are required
    for the auxin-induced ultrafast global phospho-response and for downstream processes
    that include the activation of H+-ATPase and accelerated cytoplasmic streaming.
    abp1 and tmk mutants cannot establish auxin-transporting channels and show defective
    auxin-induced vasculature formation and regeneration. An ABP1(M2X) variant that
    lacks the capacity to bind auxin is unable to complement these defects in abp1
    mutants. These data indicate that ABP1 is the auxin receptor for TMK1-based cell-surface
    signalling, which mediates the global phospho-response and auxin canalization.
acknowledged_ssus:
- _id: Bio
- _id: EM-Fac
- _id: LifeSc
acknowledgement: We acknowledge K. Kubiasová for excellent technical assistance, J.
  Neuhold, A. Lehner and A. Sedivy for technical assistance with protein production
  and purification at Vienna Biocenter Core Facilities; Creoptix for performing GCI;
  and the Bioimaging, Electron Microscopy and Life Science Facilities at ISTA, the
  Plant Sciences Core Facility of CEITEC Masaryk University, the Core Facility CELLIM
  (MEYS CR, LM2018129 Czech-BioImaging) and J. Sprakel for their assistance. J.F.
  is grateful to R. Napier for many insightful suggestions and support. We thank all
  past and present members of the Friml group for their support and for other contributions
  to this effort to clarify the controversial role of ABP1 over the past seven years.
  The project received funding from the European Research Council (ERC) under the
  European Union’s Horizon 2020 research and innovation program (grant agreement no.
  742985 to J.F. and 833867 to D.W.); the Austrian Science Fund (FWF; P29988 to J.F.);
  the Netherlands Organization for Scientific Research (NWO; VICI grant 865.14.001
  to D.W. and VENI grant VI.Veni.212.003 to A.K.); the Ministry of Education, Science
  and Technological Development of the Republic of Serbia (contract no. 451-03-68/2022-14/200053
  to B.D.Ž.); and the MEXT/JSPS KAKENHI to K.T. (20K06685) and T.K. (20H05687 and
  20H05910).
article_processing_charge: No
article_type: original
author:
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Michelle C
  full_name: Gallei, Michelle C
  id: 35A03822-F248-11E8-B48F-1D18A9856A87
  last_name: Gallei
  orcid: 0000-0003-1286-7368
- first_name: Zuzana
  full_name: Gelová, Zuzana
  id: 0AE74790-0E0B-11E9-ABC7-1ACFE5697425
  last_name: Gelová
  orcid: 0000-0003-4783-1752
- first_name: Alexander J
  full_name: Johnson, Alexander J
  id: 46A62C3A-F248-11E8-B48F-1D18A9856A87
  last_name: Johnson
  orcid: 0000-0002-2739-8843
- first_name: Ewa
  full_name: Mazur, Ewa
  last_name: Mazur
- first_name: Aline
  full_name: Monzer, Aline
  id: 2DB5D88C-D7B3-11E9-B8FD-7907E6697425
  last_name: Monzer
- first_name: Lesia
  full_name: Rodriguez Solovey, Lesia
  id: 3922B506-F248-11E8-B48F-1D18A9856A87
  last_name: Rodriguez Solovey
  orcid: 0000-0002-7244-7237
- first_name: Mark
  full_name: Roosjen, Mark
  last_name: Roosjen
- first_name: Inge
  full_name: Verstraeten, Inge
  id: 362BF7FE-F248-11E8-B48F-1D18A9856A87
  last_name: Verstraeten
  orcid: 0000-0001-7241-2328
- first_name: Branka D.
  full_name: Živanović, Branka D.
  last_name: Živanović
- first_name: Minxia
  full_name: Zou, Minxia
  id: 5c243f41-03f3-11ec-841c-96faf48a7ef9
  last_name: Zou
- first_name: Lukas
  full_name: Fiedler, Lukas
  id: 7c417475-8972-11ed-ae7b-8b674ca26986
  last_name: Fiedler
- first_name: Caterina
  full_name: Giannini, Caterina
  id: e3fdddd5-f6e0-11ea-865d-ca99ee6367f4
  last_name: Giannini
- first_name: Peter
  full_name: Grones, Peter
  last_name: Grones
- first_name: Mónika
  full_name: Hrtyan, Mónika
  id: 45A71A74-F248-11E8-B48F-1D18A9856A87
  last_name: Hrtyan
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: Andre
  full_name: Kuhn, Andre
  last_name: Kuhn
- first_name: Madhumitha
  full_name: Narasimhan, Madhumitha
  id: 44BF24D0-F248-11E8-B48F-1D18A9856A87
  last_name: Narasimhan
  orcid: 0000-0002-8600-0671
- first_name: Marek
  full_name: Randuch, Marek
  id: 6ac4636d-15b2-11ec-abd3-fb8df79972ae
  last_name: Randuch
- first_name: Nikola
  full_name: Rýdza, Nikola
  last_name: Rýdza
- first_name: Koji
  full_name: Takahashi, Koji
  last_name: Takahashi
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Anastasiia
  full_name: Teplova, Anastasiia
  id: e3736151-106c-11ec-b916-c2558e2762c6
  last_name: Teplova
- first_name: Toshinori
  full_name: Kinoshita, Toshinori
  last_name: Kinoshita
- first_name: Dolf
  full_name: Weijers, Dolf
  last_name: Weijers
- first_name: Hana
  full_name: Rakusová, Hana
  last_name: Rakusová
citation:
  ama: Friml J, Gallei MC, Gelová Z, et al. ABP1–TMK auxin perception for global phosphorylation
    and auxin canalization. <i>Nature</i>. 2022;609(7927):575-581. doi:<a href="https://doi.org/10.1038/s41586-022-05187-x">10.1038/s41586-022-05187-x</a>
  apa: Friml, J., Gallei, M. C., Gelová, Z., Johnson, A. J., Mazur, E., Monzer, A.,
    … Rakusová, H. (2022). ABP1–TMK auxin perception for global phosphorylation and
    auxin canalization. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-022-05187-x">https://doi.org/10.1038/s41586-022-05187-x</a>
  chicago: Friml, Jiří, Michelle C Gallei, Zuzana Gelová, Alexander J Johnson, Ewa
    Mazur, Aline Monzer, Lesia Rodriguez Solovey, et al. “ABP1–TMK Auxin Perception
    for Global Phosphorylation and Auxin Canalization.” <i>Nature</i>. Springer Nature,
    2022. <a href="https://doi.org/10.1038/s41586-022-05187-x">https://doi.org/10.1038/s41586-022-05187-x</a>.
  ieee: J. Friml <i>et al.</i>, “ABP1–TMK auxin perception for global phosphorylation
    and auxin canalization,” <i>Nature</i>, vol. 609, no. 7927. Springer Nature, pp.
    575–581, 2022.
  ista: Friml J, Gallei MC, Gelová Z, Johnson AJ, Mazur E, Monzer A, Rodriguez Solovey
    L, Roosjen M, Verstraeten I, Živanović BD, Zou M, Fiedler L, Giannini C, Grones
    P, Hrtyan M, Kaufmann W, Kuhn A, Narasimhan M, Randuch M, Rýdza N, Takahashi K,
    Tan S, Teplova A, Kinoshita T, Weijers D, Rakusová H. 2022. ABP1–TMK auxin perception
    for global phosphorylation and auxin canalization. Nature. 609(7927), 575–581.
  mla: Friml, Jiří, et al. “ABP1–TMK Auxin Perception for Global Phosphorylation and
    Auxin Canalization.” <i>Nature</i>, vol. 609, no. 7927, Springer Nature, 2022,
    pp. 575–81, doi:<a href="https://doi.org/10.1038/s41586-022-05187-x">10.1038/s41586-022-05187-x</a>.
  short: J. Friml, M.C. Gallei, Z. Gelová, A.J. Johnson, E. Mazur, A. Monzer, L. Rodriguez
    Solovey, M. Roosjen, I. Verstraeten, B.D. Živanović, M. Zou, L. Fiedler, C. Giannini,
    P. Grones, M. Hrtyan, W. Kaufmann, A. Kuhn, M. Narasimhan, M. Randuch, N. Rýdza,
    K. Takahashi, S. Tan, A. Teplova, T. Kinoshita, D. Weijers, H. Rakusová, Nature
    609 (2022) 575–581.
date_created: 2023-01-16T10:04:48Z
date_published: 2022-09-15T00:00:00Z
date_updated: 2023-11-07T08:16:09Z
day: '15'
ddc:
- '580'
department:
- _id: JiFr
- _id: GradSch
- _id: EvBe
- _id: EM-Fac
doi: 10.1038/s41586-022-05187-x
ec_funded: 1
external_id:
  isi:
  - '000851357500002'
  pmid:
  - '36071161'
file:
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  date_created: 2023-11-02T17:12:37Z
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file_date_updated: 2023-11-02T17:12:37Z
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intvolume: '       609'
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language:
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month: '09'
oa: 1
oa_version: Submitted Version
page: 575-581
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 262EF96E-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P29988
  name: RNA-directed DNA methylation in plant development
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: ABP1–TMK auxin perception for global phosphorylation and auxin canalization
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 609
year: '2022'
...
