---
_id: '14843'
abstract:
- lang: eng
  text: The coupling between Ca2+ channels and release sensors is a key factor defining
    the signaling properties of a synapse. However, the coupling nanotopography at
    many synapses remains unknown, and it is unclear how it changes during development.
    To address these questions, we examined coupling at the cerebellar inhibitory
    basket cell (BC)-Purkinje cell (PC) synapse. Biophysical analysis of transmission
    by paired recording and intracellular pipette perfusion revealed that the effects
    of exogenous Ca2+ chelators decreased during development, despite constant reliance
    of release on P/Q-type Ca2+ channels. Structural analysis by freeze-fracture replica
    labeling (FRL) and transmission electron microscopy (EM) indicated that presynaptic
    P/Q-type Ca2+ channels formed nanoclusters throughout development, whereas docked
    vesicles were only clustered at later developmental stages. Modeling suggested
    a developmental transformation from a more random to a more clustered coupling
    nanotopography. Thus, presynaptic signaling developmentally approaches a point-to-point
    configuration, optimizing speed, reliability, and energy efficiency of synaptic
    transmission.
acknowledged_ssus:
- _id: EM-Fac
- _id: PreCl
- _id: M-Shop
acknowledgement: We thank Drs. David DiGregorio and Erwin Neher for critically reading
  an earlier version of the manuscript, Ralf Schneggenburger for helpful discussions,
  Benjamin Suter and Katharina Lichter for support with image analysis, Chris Wojtan
  for advice on numerical solution of partial differential equations, Maria Reva for
  help with Ripley analysis, Alois Schlögl for programming, and Akari Hagiwara and
  Toshihisa Ohtsuka for anti-ELKS antibody. We are grateful to Florian Marr, Christina
  Altmutter, and Vanessa Zheden for excellent technical assistance and to Eleftheria
  Kralli-Beller for manuscript editing. This research was supported by the Scientific
  Services Units (SSUs) of ISTA (Electron Microscopy Facility, Preclinical Facility,
  and Machine Shop). The project received funding from the European Research Council
  (ERC) under the European Union’s Horizon 2020 research and innovation program (grant
  agreement no. 692692), the Fonds zur Förderung der Wissenschaftlichen Forschung
  (Z 312-B27, Wittgenstein award; P 36232-B), all to P.J., and a DOC fellowship of
  the Austrian Academy of Sciences to J.-J.C.
article_processing_charge: No
article_type: original
author:
- first_name: JingJing
  full_name: Chen, JingJing
  id: 2C4E65C8-F248-11E8-B48F-1D18A9856A87
  last_name: Chen
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: Chong
  full_name: Chen, Chong
  id: 3DFD581A-F248-11E8-B48F-1D18A9856A87
  last_name: Chen
- first_name: Itaru
  full_name: Arai, Itaru
  id: 32A73F6C-F248-11E8-B48F-1D18A9856A87
  last_name: Arai
- first_name: Olena
  full_name: Kim, Olena
  id: 3F8ABDDA-F248-11E8-B48F-1D18A9856A87
  last_name: Kim
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
citation:
  ama: Chen J, Kaufmann W, Chen C, et al. Developmental transformation of Ca2+ channel-vesicle
    nanotopography at a central GABAergic synapse. <i>Neuron</i>. doi:<a href="https://doi.org/10.1016/j.neuron.2023.12.002">10.1016/j.neuron.2023.12.002</a>
  apa: Chen, J., Kaufmann, W., Chen, C., Arai,  itaru, Kim, O., Shigemoto, R., &#38;
    Jonas, P. M. (n.d.). Developmental transformation of Ca2+ channel-vesicle nanotopography
    at a central GABAergic synapse. <i>Neuron</i>. Elsevier. <a href="https://doi.org/10.1016/j.neuron.2023.12.002">https://doi.org/10.1016/j.neuron.2023.12.002</a>
  chicago: Chen, JingJing, Walter Kaufmann, Chong Chen, itaru Arai, Olena Kim, Ryuichi
    Shigemoto, and Peter M Jonas. “Developmental Transformation of Ca2+ Channel-Vesicle
    Nanotopography at a Central GABAergic Synapse.” <i>Neuron</i>. Elsevier, n.d.
    <a href="https://doi.org/10.1016/j.neuron.2023.12.002">https://doi.org/10.1016/j.neuron.2023.12.002</a>.
  ieee: J. Chen <i>et al.</i>, “Developmental transformation of Ca2+ channel-vesicle
    nanotopography at a central GABAergic synapse,” <i>Neuron</i>. Elsevier.
  ista: Chen J, Kaufmann W, Chen C, Arai  itaru, Kim O, Shigemoto R, Jonas PM. Developmental
    transformation of Ca2+ channel-vesicle nanotopography at a central GABAergic synapse.
    Neuron.
  mla: Chen, JingJing, et al. “Developmental Transformation of Ca2+ Channel-Vesicle
    Nanotopography at a Central GABAergic Synapse.” <i>Neuron</i>, Elsevier, doi:<a
    href="https://doi.org/10.1016/j.neuron.2023.12.002">10.1016/j.neuron.2023.12.002</a>.
  short: J. Chen, W. Kaufmann, C. Chen,  itaru Arai, O. Kim, R. Shigemoto, P.M. Jonas,
    Neuron (n.d.).
date_created: 2024-01-21T23:00:56Z
date_published: 2024-01-11T00:00:00Z
date_updated: 2024-03-05T09:31:24Z
day: '11'
department:
- _id: PeJo
- _id: EM-Fac
- _id: RySh
doi: 10.1016/j.neuron.2023.12.002
ec_funded: 1
external_id:
  pmid:
  - '38215739'
language:
- iso: eng
month: '01'
oa_version: None
pmid: 1
project:
- _id: 25B7EB9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '692692'
  name: Biophysics and circuit function of a giant cortical glumatergic synapse
- _id: 25C5A090-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00312
  name: The Wittgenstein Prize
- _id: bd88be38-d553-11ed-ba76-81d5a70a6ef5
  grant_number: P36232
  name: Mechanisms of GABA release in hippocampal circuits
- _id: 26B66A3E-B435-11E9-9278-68D0E5697425
  grant_number: '25383'
  name: Development of nanodomain coupling between Ca2+ channels and release sensors
    at a central inhibitory synapse
publication: Neuron
publication_identifier:
  eissn:
  - 1097-4199
  issn:
  - 0896-6273
publication_status: inpress
publisher: Elsevier
quality_controlled: '1'
related_material:
  link:
  - description: News on ISTA Website
    relation: press_release
    url: https://ista.ac.at/en/news/synapses-brought-to-the-point/
scopus_import: '1'
status: public
title: Developmental transformation of Ca2+ channel-vesicle nanotopography at a central
  GABAergic synapse
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
_id: '12875'
abstract:
- lang: eng
  text: The superior colliculus (SC) in the mammalian midbrain is essential for multisensory
    integration and is composed of a rich diversity of excitatory and inhibitory neurons
    and glia. However, the developmental principles directing the generation of SC
    cell-type diversity are not understood. Here, we pursued systematic cell lineage
    tracing in silico and in vivo, preserving full spatial information, using genetic
    mosaic analysis with double markers (MADM)-based clonal analysis with single-cell
    sequencing (MADM-CloneSeq). The analysis of clonally related cell lineages revealed
    that radial glial progenitors (RGPs) in SC are exceptionally multipotent. Individual
    resident RGPs have the capacity to produce all excitatory and inhibitory SC neuron
    types, even at the stage of terminal division. While individual clonal units show
    no pre-defined cellular composition, the establishment of appropriate relative
    proportions of distinct neuronal types occurs in a PTEN-dependent manner. Collectively,
    our findings provide an inaugural framework at the single-RGP/-cell level of the
    mammalian SC ontogeny.
acknowledged_ssus:
- _id: Bio
- _id: M-Shop
- _id: LifeSc
- _id: PreCl
acknowledgement: "We thank Liqun Luo for his continued support, for providing essential
  resources for generating Fzd10-CreER mice which were generated in his laboratory,
  and for comments on the manuscript; W. Zhong for providing Nestin-Cre transgenic
  mouse line for this study; A. Heger for mouse colony management; R. Beattie and
  T. Asenov for designing and producing components of acute slice recovery chamber
  for MADM-CloneSeq experiments; and K. Leopold, J. Rodarte and N. Amberg for initial
  experiments, technical support and/or assistance. This study was supported by the
  Scientific Service Units (SSU) of IST Austria through resources provided by the
  Imaging & Optics Facility (IOF), Laboratory Support Facility (LSF), Miba Machine
  Shop, and Pre-clinical Facility (PCF). G.C. received funding from European Commission
  (IST plus postdoctoral fellowship). This work was supported by ISTA institutional\r\nfunds;
  the Austrian Science Fund Special Research Programmes (FWF SFB F78 Neuro Stem Modulation)
  to S.H. "
article_processing_charge: Yes (via OA deal)
article_type: comment
author:
- first_name: Giselle T
  full_name: Cheung, Giselle T
  id: 471195F6-F248-11E8-B48F-1D18A9856A87
  last_name: Cheung
  orcid: 0000-0001-8457-2572
- first_name: Florian
  full_name: Pauler, Florian
  id: 48EA0138-F248-11E8-B48F-1D18A9856A87
  last_name: Pauler
  orcid: 0000-0002-7462-0048
- first_name: Peter
  full_name: Koppensteiner, Peter
  id: 3B8B25A8-F248-11E8-B48F-1D18A9856A87
  last_name: Koppensteiner
  orcid: 0000-0002-3509-1948
- first_name: Thomas
  full_name: Krausgruber, Thomas
  last_name: Krausgruber
- first_name: Carmen
  full_name: Streicher, Carmen
  id: 36BCB99C-F248-11E8-B48F-1D18A9856A87
  last_name: Streicher
- first_name: Martin
  full_name: Schrammel, Martin
  id: f13e7cae-e8bd-11ed-841a-96dedf69f46d
  last_name: Schrammel
- first_name: Natalie Y
  full_name: Özgen, Natalie Y
  id: e68ece33-f6e0-11ea-865d-ae1031dcc090
  last_name: Özgen
- first_name: Alexis
  full_name: Ivec, Alexis
  id: 1d144691-e8be-11ed-9b33-bdd3077fad4c
  last_name: Ivec
- first_name: Christoph
  full_name: Bock, Christoph
  last_name: Bock
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
date_created: 2023-04-27T09:41:48Z
date_published: 2024-01-17T00:00:00Z
date_updated: 2025-05-14T09:39:37Z
day: '17'
ddc:
- '570'
department:
- _id: SiHi
- _id: RySh
doi: 10.1016/j.neuron.2023.11.009
external_id:
  pmid:
  - '38096816'
file:
- access_level: open_access
  checksum: 32b3788f7085cf44a84108d8faaff3ce
  content_type: application/pdf
  creator: dernst
  date_created: 2024-02-06T13:56:15Z
  date_updated: 2024-02-06T13:56:15Z
  file_id: '14944'
  file_name: 2024_Neuron_Cheung.pdf
  file_size: 5942467
  relation: main_file
  success: 1
file_date_updated: 2024-02-06T13:56:15Z
has_accepted_license: '1'
intvolume: '       112'
issue: '2'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '01'
oa: 1
oa_version: Published Version
page: 230-246.e11
pmid: 1
project:
- _id: 059F6AB4-7A3F-11EA-A408-12923DDC885E
  grant_number: F07805
  name: Molecular Mechanisms of Neural Stem Cell Lineage Progression
publication: Neuron
publication_identifier:
  eisbn:
  - '1234995621'
  issn:
  - 0896-6273
  issnl:
  - 1234-5678
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  link:
  - description: News on ISTA Website
    relation: press_release
    url: https://ista.ac.at/en/news/the-pedigree-of-brain-cells/
scopus_import: '1'
status: public
title: Multipotent progenitors instruct ontogeny of the superior colliculus
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 112
year: '2024'
...
---
_id: '13173'
abstract:
- lang: eng
  text: GABAB receptor (GBR) activation inhibits neurotransmitter release in axon
    terminals in the brain, except in medial habenula (MHb) terminals, which show
    robust potentiation. However, mechanisms underlying this enigmatic potentiation
    remain elusive. Here, we report that GBR activation on MHb terminals induces an
    activity-dependent transition from a facilitating, tonic to a depressing, phasic
    neurotransmitter release mode. This transition is accompanied by a 4.1-fold increase
    in readily releasable vesicle pool (RRP) size and a 3.5-fold increase of docked
    synaptic vesicles at the presynaptic active zone (AZ). Strikingly, tonic and phasic
    release exhibit distinct coupling distances and are selectively affected by deletion
    of synaptoporin (SPO) and Ca2+-dependent activator protein for secretion 2 (CAPS2),
    respectively. SPO modulates augmentation, the short-term plasticity associated
    with tonic release, and CAPS2 retains the increased RRP for initial responses
    in phasic response trains. Double pre-embedding immunolabeling confirmed the co-localization
    of CAPS2 and SPO inside the same terminal. The cytosolic protein CAPS2 showed
    a synaptic vesicle (SV)-associated distribution similar to the vesicular transmembrane
    protein SPO. A newly developed “Flash and Freeze-fracture” method revealed the
    release of SPO-associated vesicles in both tonic and phasic modes and activity-dependent
    recruitment of CAPS2 to the AZ during phasic release, which lasted several minutes.
    Overall, these results indicate that GBR activation translocates CAPS2 to the
    AZ along with the fusion of CAPS2-associated SVs, contributing to a persistent
    RRP increase. Thus, we discovered structural and molecular mechanisms underlying
    tonic and phasic neurotransmitter release and their transition by GBR activation
    in MHb terminals.
article_processing_charge: No
author:
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: Shigemoto R. Transition from tonic to phasic neurotransmitter release by presynaptic
    GABAB receptor activation in medial habenula terminals. 2023. doi:<a href="https://doi.org/10.15479/AT:ISTA:13173">10.15479/AT:ISTA:13173</a>
  apa: Shigemoto, R. (2023). Transition from tonic to phasic neurotransmitter release
    by presynaptic GABAB receptor activation in medial habenula terminals. Institute
    of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:13173">https://doi.org/10.15479/AT:ISTA:13173</a>
  chicago: Shigemoto, Ryuichi. “Transition from Tonic to Phasic Neurotransmitter Release
    by Presynaptic GABAB Receptor Activation in Medial Habenula Terminals.” Institute
    of Science and Technology Austria, 2023. <a href="https://doi.org/10.15479/AT:ISTA:13173">https://doi.org/10.15479/AT:ISTA:13173</a>.
  ieee: R. Shigemoto, “Transition from tonic to phasic neurotransmitter release by
    presynaptic GABAB receptor activation in medial habenula terminals.” Institute
    of Science and Technology Austria, 2023.
  ista: Shigemoto R. 2023. Transition from tonic to phasic neurotransmitter release
    by presynaptic GABAB receptor activation in medial habenula terminals, Institute
    of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:13173">10.15479/AT:ISTA:13173</a>.
  mla: Shigemoto, Ryuichi. <i>Transition from Tonic to Phasic Neurotransmitter Release
    by Presynaptic GABAB Receptor Activation in Medial Habenula Terminals</i>. Institute
    of Science and Technology Austria, 2023, doi:<a href="https://doi.org/10.15479/AT:ISTA:13173">10.15479/AT:ISTA:13173</a>.
  short: R. Shigemoto, (2023).
date_created: 2023-06-29T13:16:42Z
date_published: 2023-07-29T00:00:00Z
date_updated: 2024-02-21T12:19:26Z
day: '29'
ddc:
- '571'
department:
- _id: RySh
doi: 10.15479/AT:ISTA:13173
file:
- access_level: closed
  checksum: ed59170869ba621f89f7c1894092192f
  content_type: application/x-zip-compressed
  creator: shigemot
  date_created: 2023-06-29T13:11:22Z
  date_updated: 2023-11-17T14:30:44Z
  description: After review an updated version of the data is provided
  file_id: '13174'
  file_name: Raw data for Koppensteiner et al.zip
  file_size: 542873672
  relation: main_file
  title: Outdated Version
- access_level: open_access
  checksum: c07860eb82b4d367245f1b589fe5c250
  content_type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
  creator: patrickd
  date_created: 2023-11-17T14:13:02Z
  date_updated: 2023-11-17T14:13:02Z
  file_id: '14550'
  file_name: 11-17-23 Updated Koppensteiner et al. raw data.xlsx
  file_size: 915079
  relation: main_file
  success: 1
- access_level: open_access
  checksum: abf84b1699edac4349dc3a92d466fb7b
  content_type: application/x-zip-compressed
  creator: dernst
  date_created: 2024-02-06T07:21:43Z
  date_updated: 2024-02-06T07:21:43Z
  file_id: '14942'
  file_name: EM_Images.zip
  file_size: 544868924
  relation: main_file
  success: 1
file_date_updated: 2024-02-06T07:21:43Z
has_accepted_license: '1'
keyword:
- medial habenula
- GABAB receptor
- vesicle release
- Flash and Freeze
- Flash and Freeze-fracture
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '07'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
status: public
title: Transition from tonic to phasic neurotransmitter release by presynaptic GABAB
  receptor activation in medial habenula terminals
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '13202'
abstract:
- lang: eng
  text: Phosphatidylinositol-4,5-bisphosphate (PI(4,5)P2) plays an essential role
    in neuronal activities through interaction with various proteins involved in signaling
    at membranes. However, the distribution pattern of PI(4,5)P2 and the association
    with these proteins on the neuronal cell membranes remain elusive. In this study,
    we established a method for visualizing PI(4,5)P2 by SDS-digested freeze-fracture
    replica labeling (SDS-FRL) to investigate the quantitative nanoscale distribution
    of PI(4,5)P2 in cryo-fixed brain. We demonstrate that PI(4,5)P2 forms tiny clusters
    with a mean size of ∼1000 nm2 rather than randomly distributed in cerebellar neuronal
    membranes in male C57BL/6J mice. These clusters show preferential accumulation
    in specific membrane compartments of different cell types, in particular, in Purkinje
    cell (PC) spines and granule cell (GC) presynaptic active zones. Furthermore,
    we revealed extensive association of PI(4,5)P2 with CaV2.1 and GIRK3 across different
    membrane compartments, whereas its association with mGluR1α was compartment specific.
    These results suggest that our SDS-FRL method provides valuable insights into
    the physiological functions of PI(4,5)P2 in neurons.
acknowledged_ssus:
- _id: EM-Fac
acknowledgement: This work was supported by The Institute of Science and Technology
  (IST) Austria, the European Union's Horizon 2020 Research and Innovation Program
  under the Marie Skłodowska-Curie Grant Agreement No. 793482 (to K.E.) and by the
  European Research Council (ERC) Grant Agreement No. 694539 (to R.S.). We thank Nicoleta
  Condruz (IST Austria, Klosterneuburg, Austria) for technical assistance with sample
  preparation, the Electron Microscopy Facility of IST Austria (Klosterneuburg, Austria)
  for technical support with EM works, Natalia Baranova (University of Vienna, Vienna,
  Austria) and Martin Loose (IST Austria, Klosterneuburg, Austria) for advice on liposome
  preparation, and Yugo Fukazawa (University of Fukui, Fukui, Japan) for comments.
article_processing_charge: No
article_type: original
author:
- first_name: Kohgaku
  full_name: Eguchi, Kohgaku
  id: 2B7846DC-F248-11E8-B48F-1D18A9856A87
  last_name: Eguchi
  orcid: 0000-0002-6170-2546
- first_name: Elodie
  full_name: Le Monnier, Elodie
  id: 3B59276A-F248-11E8-B48F-1D18A9856A87
  last_name: Le Monnier
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: Eguchi K, Le Monnier E, Shigemoto R. Nanoscale phosphoinositide distribution
    on cell membranes of mouse cerebellar neurons. <i>The Journal of Neuroscience</i>.
    2023;43(23):4197-4216. doi:<a href="https://doi.org/10.1523/JNEUROSCI.1514-22.2023">10.1523/JNEUROSCI.1514-22.2023</a>
  apa: Eguchi, K., Le Monnier, E., &#38; Shigemoto, R. (2023). Nanoscale phosphoinositide
    distribution on cell membranes of mouse cerebellar neurons. <i>The Journal of
    Neuroscience</i>. Society for Neuroscience. <a href="https://doi.org/10.1523/JNEUROSCI.1514-22.2023">https://doi.org/10.1523/JNEUROSCI.1514-22.2023</a>
  chicago: Eguchi, Kohgaku, Elodie Le Monnier, and Ryuichi Shigemoto. “Nanoscale Phosphoinositide
    Distribution on Cell Membranes of Mouse Cerebellar Neurons.” <i>The Journal of
    Neuroscience</i>. Society for Neuroscience, 2023. <a href="https://doi.org/10.1523/JNEUROSCI.1514-22.2023">https://doi.org/10.1523/JNEUROSCI.1514-22.2023</a>.
  ieee: K. Eguchi, E. Le Monnier, and R. Shigemoto, “Nanoscale phosphoinositide distribution
    on cell membranes of mouse cerebellar neurons,” <i>The Journal of Neuroscience</i>,
    vol. 43, no. 23. Society for Neuroscience, pp. 4197–4216, 2023.
  ista: Eguchi K, Le Monnier E, Shigemoto R. 2023. Nanoscale phosphoinositide distribution
    on cell membranes of mouse cerebellar neurons. The Journal of Neuroscience. 43(23),
    4197–4216.
  mla: Eguchi, Kohgaku, et al. “Nanoscale Phosphoinositide Distribution on Cell Membranes
    of Mouse Cerebellar Neurons.” <i>The Journal of Neuroscience</i>, vol. 43, no.
    23, Society for Neuroscience, 2023, pp. 4197–216, doi:<a href="https://doi.org/10.1523/JNEUROSCI.1514-22.2023">10.1523/JNEUROSCI.1514-22.2023</a>.
  short: K. Eguchi, E. Le Monnier, R. Shigemoto, The Journal of Neuroscience 43 (2023)
    4197–4216.
date_created: 2023-07-09T22:01:12Z
date_published: 2023-06-07T00:00:00Z
date_updated: 2023-10-18T07:12:47Z
day: '07'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1523/JNEUROSCI.1514-22.2023
ec_funded: 1
external_id:
  isi:
  - '001020132100005'
  pmid:
  - '37160366'
file:
- access_level: open_access
  checksum: 70b2141870e0bf1c94fd343e18fdbc32
  content_type: application/pdf
  creator: alisjak
  date_created: 2023-07-10T09:04:58Z
  date_updated: 2023-07-10T09:04:58Z
  file_id: '13205'
  file_name: 2023_JN_Eguchi.pdf
  file_size: 7794425
  relation: main_file
  success: 1
file_date_updated: 2023-07-10T09:04:58Z
has_accepted_license: '1'
intvolume: '        43'
isi: 1
issue: '23'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 4197-4216
pmid: 1
project:
- _id: 2659CC84-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '793482'
  name: 'Ultrastructural analysis of phosphoinositides in nerve terminals: distribution,
    dynamics and physiological roles in synaptic transmission'
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
publication: The Journal of Neuroscience
publication_identifier:
  eissn:
  - 1529-2401
  issn:
  - 0270-6474
publication_status: published
publisher: Society for Neuroscience
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nanoscale phosphoinositide distribution on cell membranes of mouse cerebellar
  neurons
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 43
year: '2023'
...
---
_id: '14253'
abstract:
- lang: eng
  text: Junctions between the endoplasmic reticulum (ER) and the plasma membrane (PM)
    are specialized membrane contacts ubiquitous in eukaryotic cells. Concentration
    of intracellular signaling machinery near ER-PM junctions allows these domains
    to serve critical roles in lipid and Ca2+ signaling and homeostasis. Subcellular
    compartmentalization of protein kinase A (PKA) signaling also regulates essential
    cellular functions, however, no specific association between PKA and ER-PM junctional
    domains is known. Here, we show that in brain neurons type I PKA is directed to
    Kv2.1 channel-dependent ER-PM junctional domains via SPHKAP, a type I PKA-specific
    anchoring protein. SPHKAP association with type I PKA regulatory subunit RI and
    ER-resident VAP proteins results in the concentration of type I PKA between stacked
    ER cisternae associated with ER-PM junctions. This ER-associated PKA signalosome
    enables reciprocal regulation between PKA and Ca2+ signaling machinery to support
    Ca2+ influx and excitation-transcription coupling. These data reveal that neuronal
    ER-PM junctions support a receptor-independent form of PKA signaling driven by
    membrane depolarization and intracellular Ca2+, allowing conversion of information
    encoded in electrical signals into biochemical changes universally recognized
    throughout the cell.
acknowledgement: We thank Kayla Templeton and Peter Turcanu for technical assistance,
  Michelle Salemi for assistance with LC-MS data acquisition and analysis, Dr. Belvin
  Gong for advice on monoclonal antibody generation, Drs. Maria Casas Prat and Eamonn
  Dickson for assistance with super-resolution TIRF microscopy, Dr. Oscar Cerda for
  assistance with the design of TAT-FFAT peptides, Dr. Fernando Santana for helpful
  discussions, and Dr. Jodi Nunnari for a careful reading of our manuscript. We also
  thank Dr. Alan Howe, Dr. Sohum Mehta, and Dr. Jin Zhang for providing plasmids used
  in this study. This project was funded by NIH Grants R01NS114210 and R21NS101648
  (J.S.T.), and F32NS108519 (N.C.V.).
article_number: '5231'
article_processing_charge: Yes
article_type: original
author:
- first_name: Nicholas C.
  full_name: Vierra, Nicholas C.
  last_name: Vierra
- first_name: Luisa
  full_name: Ribeiro-Silva, Luisa
  last_name: Ribeiro-Silva
- first_name: Michael
  full_name: Kirmiz, Michael
  last_name: Kirmiz
- first_name: Deborah
  full_name: Van Der List, Deborah
  last_name: Van Der List
- first_name: Pradeep
  full_name: Bhandari, Pradeep
  id: 45EDD1BC-F248-11E8-B48F-1D18A9856A87
  last_name: Bhandari
  orcid: 0000-0003-0863-4481
- first_name: Olivia A.
  full_name: Mack, Olivia A.
  last_name: Mack
- first_name: James
  full_name: Carroll, James
  last_name: Carroll
- first_name: Elodie
  full_name: Le Monnier, Elodie
  id: 3B59276A-F248-11E8-B48F-1D18A9856A87
  last_name: Le Monnier
- first_name: Sue A.
  full_name: Aicher, Sue A.
  last_name: Aicher
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: James S.
  full_name: Trimmer, James S.
  last_name: Trimmer
citation:
  ama: Vierra NC, Ribeiro-Silva L, Kirmiz M, et al. Neuronal ER-plasma membrane junctions
    couple excitation to Ca2+-activated PKA signaling. <i>Nature Communications</i>.
    2023;14. doi:<a href="https://doi.org/10.1038/s41467-023-40930-6">10.1038/s41467-023-40930-6</a>
  apa: Vierra, N. C., Ribeiro-Silva, L., Kirmiz, M., Van Der List, D., Bhandari, P.,
    Mack, O. A., … Trimmer, J. S. (2023). Neuronal ER-plasma membrane junctions couple
    excitation to Ca2+-activated PKA signaling. <i>Nature Communications</i>. Springer
    Nature. <a href="https://doi.org/10.1038/s41467-023-40930-6">https://doi.org/10.1038/s41467-023-40930-6</a>
  chicago: Vierra, Nicholas C., Luisa Ribeiro-Silva, Michael Kirmiz, Deborah Van Der
    List, Pradeep Bhandari, Olivia A. Mack, James Carroll, et al. “Neuronal ER-Plasma
    Membrane Junctions Couple Excitation to Ca2+-Activated PKA Signaling.” <i>Nature
    Communications</i>. Springer Nature, 2023. <a href="https://doi.org/10.1038/s41467-023-40930-6">https://doi.org/10.1038/s41467-023-40930-6</a>.
  ieee: N. C. Vierra <i>et al.</i>, “Neuronal ER-plasma membrane junctions couple
    excitation to Ca2+-activated PKA signaling,” <i>Nature Communications</i>, vol.
    14. Springer Nature, 2023.
  ista: Vierra NC, Ribeiro-Silva L, Kirmiz M, Van Der List D, Bhandari P, Mack OA,
    Carroll J, Le Monnier E, Aicher SA, Shigemoto R, Trimmer JS. 2023. Neuronal ER-plasma
    membrane junctions couple excitation to Ca2+-activated PKA signaling. Nature Communications.
    14, 5231.
  mla: Vierra, Nicholas C., et al. “Neuronal ER-Plasma Membrane Junctions Couple Excitation
    to Ca2+-Activated PKA Signaling.” <i>Nature Communications</i>, vol. 14, 5231,
    Springer Nature, 2023, doi:<a href="https://doi.org/10.1038/s41467-023-40930-6">10.1038/s41467-023-40930-6</a>.
  short: N.C. Vierra, L. Ribeiro-Silva, M. Kirmiz, D. Van Der List, P. Bhandari, O.A.
    Mack, J. Carroll, E. Le Monnier, S.A. Aicher, R. Shigemoto, J.S. Trimmer, Nature
    Communications 14 (2023).
date_created: 2023-09-03T22:01:14Z
date_published: 2023-08-26T00:00:00Z
date_updated: 2023-09-06T06:53:32Z
day: '26'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1038/s41467-023-40930-6
external_id:
  pmid:
  - '37633939'
file:
- access_level: open_access
  checksum: 6ab8aab4e957f626a09a1c73db3388fb
  content_type: application/pdf
  creator: dernst
  date_created: 2023-09-06T06:50:07Z
  date_updated: 2023-09-06T06:50:07Z
  file_id: '14270'
  file_name: 2023_NatureComm_Vierra.pdf
  file_size: 9412549
  relation: main_file
  success: 1
file_date_updated: 2023-09-06T06:50:07Z
has_accepted_license: '1'
intvolume: '        14'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Neuronal ER-plasma membrane junctions couple excitation to Ca2+-activated PKA
  signaling
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2023'
...
---
_id: '10889'
abstract:
- lang: eng
  text: Genetically encoded tags have introduced extensive lines of application from
    purification of tagged proteins to their visualization at the single molecular,
    cellular, histological and whole-body levels. Combined with other rapidly developing
    technologies such as clustered regularly interspaced palindromic repeats (CRISPR)/CRISPR-associated
    protein 9 (Cas9) system, proteomics, super-resolution microscopy and proximity
    labeling, a large variety of genetically encoded tags have been developed in the
    last two decades. In this review, I focus on the current status of tag development
    for electron microscopic (EM) visualization of proteins with metal particle labeling.
    Compared with conventional immunoelectron microscopy using gold particles, tag-mediated
    metal particle labeling has several advantages that could potentially improve
    the sensitivity, spatial and temporal resolution, and applicability to a wide
    range of proteins of interest (POIs). It may enable researchers to detect single
    molecules in situ, allowing the quantitative measurement of absolute numbers and
    exact localization patterns of POI in the ultrastructural context. Thus, genetically
    encoded tags for EM could revolutionize the field as green fluorescence protein
    did for light microscopy, although we still have many challenges to overcome before
    reaching this goal.
acknowledgement: European Research Council Advanced Grant (694539 to R.S.).
article_processing_charge: No
article_type: original
author:
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: Shigemoto R. Electron microscopic visualization of single molecules by tag-mediated
    metal particle labeling. <i>Microscopy</i>. 2022;71(Supplement_1):i72-i80. doi:<a
    href="https://doi.org/10.1093/jmicro/dfab048">10.1093/jmicro/dfab048</a>
  apa: Shigemoto, R. (2022). Electron microscopic visualization of single molecules
    by tag-mediated metal particle labeling. <i>Microscopy</i>. Oxford Academic. <a
    href="https://doi.org/10.1093/jmicro/dfab048">https://doi.org/10.1093/jmicro/dfab048</a>
  chicago: Shigemoto, Ryuichi. “Electron Microscopic Visualization of Single Molecules
    by Tag-Mediated Metal Particle Labeling.” <i>Microscopy</i>. Oxford Academic,
    2022. <a href="https://doi.org/10.1093/jmicro/dfab048">https://doi.org/10.1093/jmicro/dfab048</a>.
  ieee: R. Shigemoto, “Electron microscopic visualization of single molecules by tag-mediated
    metal particle labeling,” <i>Microscopy</i>, vol. 71, no. Supplement_1. Oxford
    Academic, pp. i72–i80, 2022.
  ista: Shigemoto R. 2022. Electron microscopic visualization of single molecules
    by tag-mediated metal particle labeling. Microscopy. 71(Supplement_1), i72–i80.
  mla: Shigemoto, Ryuichi. “Electron Microscopic Visualization of Single Molecules
    by Tag-Mediated Metal Particle Labeling.” <i>Microscopy</i>, vol. 71, no. Supplement_1,
    Oxford Academic, 2022, pp. i72–80, doi:<a href="https://doi.org/10.1093/jmicro/dfab048">10.1093/jmicro/dfab048</a>.
  short: R. Shigemoto, Microscopy 71 (2022) i72–i80.
date_created: 2022-03-20T23:01:39Z
date_published: 2022-03-01T00:00:00Z
date_updated: 2023-08-03T06:08:01Z
day: '01'
department:
- _id: RySh
doi: 10.1093/jmicro/dfab048
ec_funded: 1
external_id:
  isi:
  - '000768384100011'
  pmid:
  - '35275179'
intvolume: '        71'
isi: 1
issue: Supplement_1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1093/jmicro/dfab048
month: '03'
oa: 1
oa_version: Published Version
page: i72-i80
pmid: 1
project:
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
publication: Microscopy
publication_identifier:
  eissn:
  - 2050-5701
  issn:
  - 2050-5698
publication_status: published
publisher: Oxford Academic
quality_controlled: '1'
scopus_import: '1'
status: public
title: Electron microscopic visualization of single molecules by tag-mediated metal
  particle labeling
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 71
year: '2022'
...
---
_id: '10890'
abstract:
- lang: eng
  text: Upon the arrival of action potentials at nerve terminals, neurotransmitters
    are released from synaptic vesicles (SVs) by exocytosis. CaV2.1, 2.2, and 2.3
    are the major subunits of the voltage-gated calcium channel (VGCC) responsible
    for increasing intraterminal calcium levels and triggering SV exocytosis in the
    central nervous system (CNS) synapses. The two-dimensional analysis of CaV2 distributions
    using sodium dodecyl sulfate (SDS)-digested freeze-fracture replica labeling (SDS-FRL)
    has revealed their numbers, densities, and nanoscale clustering patterns in individual
    presynaptic active zones. The variation in these properties affects the coupling
    of VGCCs with calcium sensors on SVs, synaptic efficacy, and temporal precision
    of transmission. In this study, we summarize how the morphological parameters
    of CaV2 distribution obtained using SDS-FRL differ depending on the different
    types of synapses and could correspond to functional properties in synaptic transmission.
acknowledgement: "This work was supported by the European Research Council advanced
  grant No. 694539 and the joint German-Austrian DFG and FWF project SYNABS (FWF:
  I-4638-B) to RS.\r\nThe authors thank Walter Kaufmann for his critical comments
  on the manuscript."
article_number: '846615'
article_processing_charge: No
article_type: original
author:
- first_name: Kohgaku
  full_name: Eguchi, Kohgaku
  id: 2B7846DC-F248-11E8-B48F-1D18A9856A87
  last_name: Eguchi
  orcid: 0000-0002-6170-2546
- first_name: Jacqueline-Claire
  full_name: Montanaro-Punzengruber, Jacqueline-Claire
  id: 3786AB44-F248-11E8-B48F-1D18A9856A87
  last_name: Montanaro-Punzengruber
- first_name: Elodie
  full_name: Le Monnier, Elodie
  id: 3B59276A-F248-11E8-B48F-1D18A9856A87
  last_name: Le Monnier
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: Eguchi K, Montanaro-Punzengruber J-C, Le Monnier E, Shigemoto R. The number
    and distinct clustering patterns of voltage-gated Calcium channels in nerve terminals.
    <i>Frontiers in Neuroanatomy</i>. 2022;16. doi:<a href="https://doi.org/10.3389/fnana.2022.846615">10.3389/fnana.2022.846615</a>
  apa: Eguchi, K., Montanaro-Punzengruber, J.-C., Le Monnier, E., &#38; Shigemoto,
    R. (2022). The number and distinct clustering patterns of voltage-gated Calcium
    channels in nerve terminals. <i>Frontiers in Neuroanatomy</i>. Frontiers. <a href="https://doi.org/10.3389/fnana.2022.846615">https://doi.org/10.3389/fnana.2022.846615</a>
  chicago: Eguchi, Kohgaku, Jacqueline-Claire Montanaro-Punzengruber, Elodie Le Monnier,
    and Ryuichi Shigemoto. “The Number and Distinct Clustering Patterns of Voltage-Gated
    Calcium Channels in Nerve Terminals.” <i>Frontiers in Neuroanatomy</i>. Frontiers,
    2022. <a href="https://doi.org/10.3389/fnana.2022.846615">https://doi.org/10.3389/fnana.2022.846615</a>.
  ieee: K. Eguchi, J.-C. Montanaro-Punzengruber, E. Le Monnier, and R. Shigemoto,
    “The number and distinct clustering patterns of voltage-gated Calcium channels
    in nerve terminals,” <i>Frontiers in Neuroanatomy</i>, vol. 16. Frontiers, 2022.
  ista: Eguchi K, Montanaro-Punzengruber J-C, Le Monnier E, Shigemoto R. 2022. The
    number and distinct clustering patterns of voltage-gated Calcium channels in nerve
    terminals. Frontiers in Neuroanatomy. 16, 846615.
  mla: Eguchi, Kohgaku, et al. “The Number and Distinct Clustering Patterns of Voltage-Gated
    Calcium Channels in Nerve Terminals.” <i>Frontiers in Neuroanatomy</i>, vol. 16,
    846615, Frontiers, 2022, doi:<a href="https://doi.org/10.3389/fnana.2022.846615">10.3389/fnana.2022.846615</a>.
  short: K. Eguchi, J.-C. Montanaro-Punzengruber, E. Le Monnier, R. Shigemoto, Frontiers
    in Neuroanatomy 16 (2022).
date_created: 2022-03-20T23:01:39Z
date_published: 2022-02-24T00:00:00Z
date_updated: 2024-10-29T07:57:26Z
day: '24'
ddc:
- '570'
department:
- _id: RySh
doi: 10.3389/fnana.2022.846615
ec_funded: 1
external_id:
  isi:
  - '000766662700001'
  pmid:
  - '35280978'
file:
- access_level: open_access
  checksum: 51ec9b90e7da919e22c01a15489eaacd
  content_type: application/pdf
  creator: dernst
  date_created: 2022-03-21T09:41:19Z
  date_updated: 2022-03-21T09:41:19Z
  file_id: '10911'
  file_name: 2022_FrontiersNeuroanatomy_Eguchi.pdf
  file_size: 2416395
  relation: main_file
  success: 1
file_date_updated: 2022-03-21T09:41:19Z
has_accepted_license: '1'
intvolume: '        16'
isi: 1
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
- _id: 05970B30-7A3F-11EA-A408-12923DDC885E
  grant_number: I04638
  name: LGI1 antibody-induced pathophysiology in synapses
publication: Frontiers in Neuroanatomy
publication_identifier:
  eissn:
  - '16625129'
publication_status: published
publisher: Frontiers
quality_controlled: '1'
scopus_import: '1'
status: public
title: The number and distinct clustering patterns of voltage-gated Calcium channels
  in nerve terminals
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 16
year: '2022'
...
---
_id: '12212'
abstract:
- lang: eng
  text: Alzheimer’s disease (AD) is characterized by a reorganization of brain activity
    determining network hyperexcitability and loss of synaptic plasticity. Precisely,
    a dysfunction in metabotropic GABAB receptor signalling through G protein-gated
    inwardly rectifying K+ (GIRK or Kir3) channels on the hippocampus has been postulated.
    Thus, we determined the impact of amyloid-β (Aβ) pathology in GIRK channel density,
    subcellular distribution, and its association with GABAB receptors in hippocampal
    CA1 pyramidal neurons from the APP/PS1 mouse model using quantitative SDS-digested
    freeze-fracture replica labelling (SDS-FRL) and proximity ligation in situ assay
    (P-LISA). In wild type mice, single SDS-FRL detection revealed a similar dendritic
    gradient for GIRK1 and GIRK2 in CA1 pyramidal cells, with higher densities in
    spines, and GIRK3 showed a lower and uniform distribution. Double SDS-FRL showed
    a co-clustering of GIRK2 and GIRK1 in post- and presynaptic compartments, but
    not for GIRK2 and GIRK3. Likewise, double GABAB1 and GIRK2 SDS-FRL detection displayed
    a high degree of co-clustering in nanodomains (40–50 nm) mostly in spines and
    axon terminals. In APP/PS1 mice, the density of GIRK2 and GIRK1, but not for GIRK3,
    was significantly reduced along the neuronal surface of CA1 pyramidal cells and
    in axon terminals contacting them. Importantly, GABAB1 and GIRK2 co-clustering
    was not present in APP/PS1 mice. Similarly, P-LISA experiments revealed a significant
    reduction in GABAB1 and GIRK2 interaction on the hippocampus of this animal model.
    Overall, our results provide compelling evidence showing a significant reduction
    on the cell surface density of pre- and postsynaptic GIRK1 and GIRK2, but not
    GIRK3, and a decline in GABAB receptors and GIRK2 channels co-clustering in hippocampal
    pyramidal neurons from APP/PS1 mice, thus suggesting that a disruption in the
    GABAB receptor–GIRK channel membrane assembly causes dysregulation in the GABAB
    signalling via GIRK channels in this AD animal model.
acknowledgement: "We thank Ms. Diane Latawiec for the English revision of the manuscript.
  Funding sources were the Spanish Ministerio de Economía y Competitividad, Junta
  de Comunidades de Castilla-La Mancha (Spain), and Life Science Innovation Center
  at University of Fukui. We thank Centres de Recerca de Catalunya (CERCA) Programme/Generalitat
  de Catalunya for IDIBELL institutional support. We thank Hitoshi Takagi and Takako
  Maegawa at the University of Fukui for their technical assistance on SDS-FRL experiments.\r\nThis
  work was supported by grants from the Spanish Ministerio de Economía y Competitividad
  (BFU2015-63769-R, RTI2018-095812-B-I00, and PID2021-125875OB-I00) and Junta de Comunidades
  de Castilla-La Mancha (SBPLY/17/180501/000229 and SBPLY/21/180501/000064) to RL,
  Life Science Innovation Center at University of Fukui and JSPS KAKENHI (Grant Numbers
  16H04662, 19H03323, and 20H05058) to YF, and Margarita Salas fellowship from Ministerio
  de Universidades and Universidad de Castilla-La Mancha to AMB."
article_number: '136'
article_processing_charge: No
article_type: original
author:
- first_name: Alejandro
  full_name: Martín-Belmonte, Alejandro
  last_name: Martín-Belmonte
- first_name: Carolina
  full_name: Aguado, Carolina
  last_name: Aguado
- first_name: Rocío
  full_name: Alfaro-Ruiz, Rocío
  last_name: Alfaro-Ruiz
- first_name: Ana Esther
  full_name: Moreno-Martínez, Ana Esther
  last_name: Moreno-Martínez
- first_name: Luis
  full_name: de la Ossa, Luis
  last_name: de la Ossa
- first_name: Ester
  full_name: Aso, Ester
  last_name: Aso
- first_name: Laura
  full_name: Gómez-Acero, Laura
  last_name: Gómez-Acero
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Francisco
  full_name: Ciruela, Francisco
  last_name: Ciruela
- first_name: Rafael
  full_name: Luján, Rafael
  last_name: Luján
citation:
  ama: Martín-Belmonte A, Aguado C, Alfaro-Ruiz R, et al. Nanoscale alterations in
    GABAB receptors and GIRK channel organization on the hippocampus of APP/PS1 mice.
    <i>Alzheimer’s Research &#38; Therapy</i>. 2022;14. doi:<a href="https://doi.org/10.1186/s13195-022-01078-5">10.1186/s13195-022-01078-5</a>
  apa: Martín-Belmonte, A., Aguado, C., Alfaro-Ruiz, R., Moreno-Martínez, A. E., de
    la Ossa, L., Aso, E., … Luján, R. (2022). Nanoscale alterations in GABAB receptors
    and GIRK channel organization on the hippocampus of APP/PS1 mice. <i>Alzheimer’s
    Research &#38; Therapy</i>. Springer Nature. <a href="https://doi.org/10.1186/s13195-022-01078-5">https://doi.org/10.1186/s13195-022-01078-5</a>
  chicago: Martín-Belmonte, Alejandro, Carolina Aguado, Rocío Alfaro-Ruiz, Ana Esther
    Moreno-Martínez, Luis de la Ossa, Ester Aso, Laura Gómez-Acero, et al. “Nanoscale
    Alterations in GABAB Receptors and GIRK Channel Organization on the Hippocampus
    of APP/PS1 Mice.” <i>Alzheimer’s Research &#38; Therapy</i>. Springer Nature,
    2022. <a href="https://doi.org/10.1186/s13195-022-01078-5">https://doi.org/10.1186/s13195-022-01078-5</a>.
  ieee: A. Martín-Belmonte <i>et al.</i>, “Nanoscale alterations in GABAB receptors
    and GIRK channel organization on the hippocampus of APP/PS1 mice,” <i>Alzheimer’s
    Research &#38; Therapy</i>, vol. 14. Springer Nature, 2022.
  ista: Martín-Belmonte A, Aguado C, Alfaro-Ruiz R, Moreno-Martínez AE, de la Ossa
    L, Aso E, Gómez-Acero L, Shigemoto R, Fukazawa Y, Ciruela F, Luján R. 2022. Nanoscale
    alterations in GABAB receptors and GIRK channel organization on the hippocampus
    of APP/PS1 mice. Alzheimer’s Research &#38; Therapy. 14, 136.
  mla: Martín-Belmonte, Alejandro, et al. “Nanoscale Alterations in GABAB Receptors
    and GIRK Channel Organization on the Hippocampus of APP/PS1 Mice.” <i>Alzheimer’s
    Research &#38; Therapy</i>, vol. 14, 136, Springer Nature, 2022, doi:<a href="https://doi.org/10.1186/s13195-022-01078-5">10.1186/s13195-022-01078-5</a>.
  short: A. Martín-Belmonte, C. Aguado, R. Alfaro-Ruiz, A.E. Moreno-Martínez, L. de
    la Ossa, E. Aso, L. Gómez-Acero, R. Shigemoto, Y. Fukazawa, F. Ciruela, R. Luján,
    Alzheimer’s Research &#38; Therapy 14 (2022).
date_created: 2023-01-16T09:45:51Z
date_published: 2022-09-21T00:00:00Z
date_updated: 2023-08-04T09:23:10Z
day: '21'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1186/s13195-022-01078-5
external_id:
  isi:
  - '000857985500001'
file:
- access_level: open_access
  checksum: 88e49715ad6a1abf0fdb27efd65368dc
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-27T07:53:18Z
  date_updated: 2023-01-27T07:53:18Z
  file_id: '12413'
  file_name: 2022_AlzheimersResearch_MartinBelmont.pdf
  file_size: 11013325
  relation: main_file
  success: 1
file_date_updated: 2023-01-27T07:53:18Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
keyword:
- Cognitive Neuroscience
- Neurology (clinical)
- Neurology
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
publication: Alzheimer's Research & Therapy
publication_identifier:
  issn:
  - 1758-9193
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nanoscale alterations in GABAB receptors and GIRK channel organization on the
  hippocampus of APP/PS1 mice
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 14
year: '2022'
...
---
_id: '7551'
abstract:
- lang: eng
  text: Novelty facilitates formation of memories. The detection of novelty and storage
    of contextual memories are both mediated by the hippocampus, yet the mechanisms
    that link these two functions remain to be defined. Dentate granule cells (GCs)
    of the dorsal hippocampus fire upon novelty exposure forming engrams of contextual
    memory. However, their key excitatory inputs from the entorhinal cortex are not
    responsive to novelty and are insufficient to make dorsal GCs fire reliably. Here
    we uncover a powerful glutamatergic pathway to dorsal GCs from ventral hippocampal
    mossy cells (MCs) that relays novelty, and is necessary and sufficient for driving
    dorsal GCs activation. Furthermore, manipulation of ventral MCs activity bidirectionally
    regulates novelty-induced contextual memory acquisition. Our results show that
    ventral MCs activity controls memory formation through an intra-hippocampal interaction
    mechanism gated by novelty.
acknowledgement: We thank Peter Jonas and Peter Somogyi for critically reading the
  manuscript, Satoshi Kida for helpful discussion, Taijia Makinen for providing the
  Prox1-creERT2 mouse line, and Hiromu Yawo for the VAMP2-Venus construct. We also
  thank Vivek Jayaraman, Ph.D.; Rex A. Kerr, Ph.D.; Douglas S. Kim, Ph.D.; Loren L.
  Looger, Ph.D.; and Karel Svoboda, Ph.D. from the GENIE Project, Janelia Farm Research
  Campus, Howard Hughes Medical Institute for the viral constructs used for GCaMP6s
  expression. We also thank Jacqueline Montanaro, Vanessa Zheden, David Kleindienst,
  and Laura Burnett for technical assistance, as well as Robert Beattie for imaging
  assistance. This work was supported by a European Research Council Advanced Grant
  694539 to R.S.
article_processing_charge: No
article_type: original
author:
- first_name: Felipe A
  full_name: Fredes Tolorza, Felipe A
  id: 384825DA-F248-11E8-B48F-1D18A9856A87
  last_name: Fredes Tolorza
- first_name: Maria A
  full_name: Silva Sifuentes, Maria A
  id: 371B3D6E-F248-11E8-B48F-1D18A9856A87
  last_name: Silva Sifuentes
- first_name: Peter
  full_name: Koppensteiner, Peter
  id: 3B8B25A8-F248-11E8-B48F-1D18A9856A87
  last_name: Koppensteiner
- first_name: Kenta
  full_name: Kobayashi, Kenta
  last_name: Kobayashi
- first_name: Maximilian A
  full_name: Jösch, Maximilian A
  id: 2BD278E6-F248-11E8-B48F-1D18A9856A87
  last_name: Jösch
  orcid: 0000-0002-3937-1330
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: Fredes Tolorza FA, Silva Sifuentes MA, Koppensteiner P, Kobayashi K, Jösch
    MA, Shigemoto R. Ventro-dorsal hippocampal pathway gates novelty-induced contextual
    memory formation. <i>Current Biology</i>. 2021;31(1):P25-38.E5. doi:<a href="https://doi.org/10.1016/j.cub.2020.09.074">10.1016/j.cub.2020.09.074</a>
  apa: Fredes Tolorza, F. A., Silva Sifuentes, M. A., Koppensteiner, P., Kobayashi,
    K., Jösch, M. A., &#38; Shigemoto, R. (2021). Ventro-dorsal hippocampal pathway
    gates novelty-induced contextual memory formation. <i>Current Biology</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.cub.2020.09.074">https://doi.org/10.1016/j.cub.2020.09.074</a>
  chicago: Fredes Tolorza, Felipe A, Maria A Silva Sifuentes, Peter Koppensteiner,
    Kenta Kobayashi, Maximilian A Jösch, and Ryuichi Shigemoto. “Ventro-Dorsal Hippocampal
    Pathway Gates Novelty-Induced Contextual Memory Formation.” <i>Current Biology</i>.
    Elsevier, 2021. <a href="https://doi.org/10.1016/j.cub.2020.09.074">https://doi.org/10.1016/j.cub.2020.09.074</a>.
  ieee: F. A. Fredes Tolorza, M. A. Silva Sifuentes, P. Koppensteiner, K. Kobayashi,
    M. A. Jösch, and R. Shigemoto, “Ventro-dorsal hippocampal pathway gates novelty-induced
    contextual memory formation,” <i>Current Biology</i>, vol. 31, no. 1. Elsevier,
    p. P25–38.E5, 2021.
  ista: Fredes Tolorza FA, Silva Sifuentes MA, Koppensteiner P, Kobayashi K, Jösch
    MA, Shigemoto R. 2021. Ventro-dorsal hippocampal pathway gates novelty-induced
    contextual memory formation. Current Biology. 31(1), P25–38.E5.
  mla: Fredes Tolorza, Felipe A., et al. “Ventro-Dorsal Hippocampal Pathway Gates
    Novelty-Induced Contextual Memory Formation.” <i>Current Biology</i>, vol. 31,
    no. 1, Elsevier, 2021, p. P25–38.E5, doi:<a href="https://doi.org/10.1016/j.cub.2020.09.074">10.1016/j.cub.2020.09.074</a>.
  short: F.A. Fredes Tolorza, M.A. Silva Sifuentes, P. Koppensteiner, K. Kobayashi,
    M.A. Jösch, R. Shigemoto, Current Biology 31 (2021) P25–38.E5.
date_created: 2020-02-28T10:56:18Z
date_published: 2021-01-11T00:00:00Z
date_updated: 2023-08-04T10:47:11Z
day: '11'
ddc:
- '570'
department:
- _id: MaJö
- _id: RySh
doi: 10.1016/j.cub.2020.09.074
ec_funded: 1
external_id:
  isi:
  - '000614361000020'
file:
- access_level: open_access
  checksum: b7b9c8bc84a08befce365c675229a7d1
  content_type: application/pdf
  creator: dernst
  date_created: 2020-10-19T13:31:28Z
  date_updated: 2020-10-19T13:31:28Z
  file_id: '8678'
  file_name: 2021_CurrentBiology_Fredes.pdf
  file_size: 4915964
  relation: main_file
  success: 1
file_date_updated: 2020-10-19T13:31:28Z
has_accepted_license: '1'
intvolume: '        31'
isi: 1
issue: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '01'
oa: 1
oa_version: Published Version
page: P25-38.E5
project:
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
publication: Current Biology
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/remembering-novelty/
status: public
title: Ventro-dorsal hippocampal pathway gates novelty-induced contextual memory formation
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 31
year: '2021'
...
---
_id: '9330'
abstract:
- lang: eng
  text: In nerve cells the genes encoding for α2δ subunits of voltage-gated calcium
    channels have been linked to synaptic functions and neurological disease. Here
    we show that α2δ subunits are essential for the formation and organization of
    glutamatergic synapses. Using a cellular α2δ subunit triple-knockout/knockdown
    model, we demonstrate a failure in presynaptic differentiation evidenced by defective
    presynaptic calcium channel clustering and calcium influx, smaller presynaptic
    active zones, and a strongly reduced accumulation of presynaptic vesicle-associated
    proteins (synapsin and vGLUT). The presynaptic defect is associated with the downscaling
    of postsynaptic AMPA receptors and the postsynaptic density. The role of α2δ isoforms
    as synaptic organizers is highly redundant, as each individual α2δ isoform can
    rescue presynaptic calcium channel trafficking and expression of synaptic proteins.
    Moreover, α2δ-2 and α2δ-3 with mutated metal ion-dependent adhesion sites can
    fully rescue presynaptic synapsin expression but only partially calcium channel
    trafficking, suggesting that the regulatory role of α2δ subunits is independent
    from its role as a calcium channel subunit. Our findings influence the current
    view on excitatory synapse formation. First, our study suggests that postsynaptic
    differentiation is secondary to presynaptic differentiation. Second, the dependence
    of presynaptic differentiation on α2δ implicates α2δ subunits as potential nucleation
    points for the organization of synapses. Finally, our results suggest that α2δ
    subunits act as transsynaptic organizers of glutamatergic synapses, thereby aligning
    the synaptic active zone with the postsynaptic density.
acknowledged_ssus:
- _id: EM-Fac
acknowledgement: "We thank Arnold Schwartz for providing α2δ-1 knockout mice; Ariane
  Benedetti, Sabine Baumgartner, Sandra Demetz, and Irene Mahlknecht for technical
  support; Nadine Ortner and Andreas Lieb for electrophysiological experiments; the
  team of the Electron Microscopy Facility at the Institute of Science and Technology
  Austria for technical support related to ultrastructural analysis; Hermann Dietrich
  and Anja Beierfuß and her team for animal care; Jutta Engel and Jörg Striessnig
  for critical discussions; and Bruno Benedetti and Bernhard Flucher for critical
  discussions and reading the manuscript. This study was supported by Austrian Science
  Fund Grants P24079, F44060, F44150, and DOC30-B30 (to G.J.O.) and T855 (to M.C.),
  European Research Council Grant AdG 694539 (to R.S.), Deutsche Forschungsgemeinschaft\r\nGrant
  SFB1348-TP A03 (to M.M.), and Interdisziplinäre Zentrum für Klinische Forschung
  Münster Grant Mi3/004/19 (to M.M.). This work is part of the PhD theses of C.L.S.,
  S.M.G., and C.A."
article_processing_charge: No
article_type: original
author:
- first_name: Clemens L.
  full_name: Schöpf, Clemens L.
  last_name: Schöpf
- first_name: Cornelia
  full_name: Ablinger, Cornelia
  last_name: Ablinger
- first_name: Stefanie M.
  full_name: Geisler, Stefanie M.
  last_name: Geisler
- first_name: Ruslan I.
  full_name: Stanika, Ruslan I.
  last_name: Stanika
- first_name: Marta
  full_name: Campiglio, Marta
  last_name: Campiglio
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: Benedikt
  full_name: Nimmervoll, Benedikt
  last_name: Nimmervoll
- first_name: Bettina
  full_name: Schlick, Bettina
  last_name: Schlick
- first_name: Johannes
  full_name: Brockhaus, Johannes
  last_name: Brockhaus
- first_name: Markus
  full_name: Missler, Markus
  last_name: Missler
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Gerald J.
  full_name: Obermair, Gerald J.
  last_name: Obermair
citation:
  ama: Schöpf CL, Ablinger C, Geisler SM, et al. Presynaptic α2δ subunits are key
    organizers of glutamatergic synapses. <i>PNAS</i>. 2021;118(14). doi:<a href="https://doi.org/10.1073/pnas.1920827118">10.1073/pnas.1920827118</a>
  apa: Schöpf, C. L., Ablinger, C., Geisler, S. M., Stanika, R. I., Campiglio, M.,
    Kaufmann, W., … Obermair, G. J. (2021). Presynaptic α2δ subunits are key organizers
    of glutamatergic synapses. <i>PNAS</i>. National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.1920827118">https://doi.org/10.1073/pnas.1920827118</a>
  chicago: Schöpf, Clemens L., Cornelia Ablinger, Stefanie M. Geisler, Ruslan I. Stanika,
    Marta Campiglio, Walter Kaufmann, Benedikt Nimmervoll, et al. “Presynaptic Α2δ
    Subunits Are Key Organizers of Glutamatergic Synapses.” <i>PNAS</i>. National
    Academy of Sciences, 2021. <a href="https://doi.org/10.1073/pnas.1920827118">https://doi.org/10.1073/pnas.1920827118</a>.
  ieee: C. L. Schöpf <i>et al.</i>, “Presynaptic α2δ subunits are key organizers of
    glutamatergic synapses,” <i>PNAS</i>, vol. 118, no. 14. National Academy of Sciences,
    2021.
  ista: Schöpf CL, Ablinger C, Geisler SM, Stanika RI, Campiglio M, Kaufmann W, Nimmervoll
    B, Schlick B, Brockhaus J, Missler M, Shigemoto R, Obermair GJ. 2021. Presynaptic
    α2δ subunits are key organizers of glutamatergic synapses. PNAS. 118(14).
  mla: Schöpf, Clemens L., et al. “Presynaptic Α2δ Subunits Are Key Organizers of
    Glutamatergic Synapses.” <i>PNAS</i>, vol. 118, no. 14, National Academy of Sciences,
    2021, doi:<a href="https://doi.org/10.1073/pnas.1920827118">10.1073/pnas.1920827118</a>.
  short: C.L. Schöpf, C. Ablinger, S.M. Geisler, R.I. Stanika, M. Campiglio, W. Kaufmann,
    B. Nimmervoll, B. Schlick, J. Brockhaus, M. Missler, R. Shigemoto, G.J. Obermair,
    PNAS 118 (2021).
date_created: 2021-04-18T22:01:40Z
date_published: 2021-04-06T00:00:00Z
date_updated: 2023-08-08T13:08:47Z
day: '06'
ddc:
- '570'
department:
- _id: EM-Fac
- _id: RySh
doi: 10.1073/pnas.1920827118
ec_funded: 1
external_id:
  isi:
  - '000637398300002'
file:
- access_level: open_access
  checksum: dd014f68ae9d7d8d8fc4139a24e04506
  content_type: application/pdf
  creator: dernst
  date_created: 2021-04-19T10:10:56Z
  date_updated: 2021-04-19T10:10:56Z
  file_id: '9340'
  file_name: 2021_PNAS_Schoepf.pdf
  file_size: 2603911
  relation: main_file
  success: 1
file_date_updated: 2021-04-19T10:10:56Z
has_accepted_license: '1'
intvolume: '       118'
isi: 1
issue: '14'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
publication: PNAS
publication_identifier:
  eissn:
  - 1091-6490
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Presynaptic α2δ subunits are key organizers of glutamatergic synapses
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 118
year: '2021'
...
---
_id: '9437'
abstract:
- lang: eng
  text: The synaptic connection from medial habenula (MHb) to interpeduncular nucleus
    (IPN) is critical for emotion-related behaviors and uniquely expresses R-type
    Ca2+ channels (Cav2.3) and auxiliary GABAB receptor (GBR) subunits, the K+-channel
    tetramerization domain-containing proteins (KCTDs). Activation of GBRs facilitates
    or inhibits transmitter release from MHb terminals depending on the IPN subnucleus,
    but the role of KCTDs is unknown. We therefore examined the localization and function
    of Cav2.3, GBRs, and KCTDs in this pathway in mice. We show in heterologous cells
    that KCTD8 and KCTD12b directly bind to Cav2.3 and that KCTD8 potentiates Cav2.3
    currents in the absence of GBRs. In the rostral IPN, KCTD8, KCTD12b, and Cav2.3
    co-localize at the presynaptic active zone. Genetic deletion indicated a bidirectional
    modulation of Cav2.3-mediated release by these KCTDs with a compensatory increase
    of KCTD8 in the active zone in KCTD12b-deficient mice. The interaction of Cav2.3
    with KCTDs therefore scales synaptic strength independent of GBR activation.
acknowledgement: We are grateful to Akari Hagiwara and Toshihisa Ohtsuka for CAST
  antibody, and Masahiko Watanabe for neurexin antibody. We thank David Adams for
  kindly providing the stable Cav2.3 cell line. Cav2.3 KO mice were kindly provided
  by Tsutomu Tanabe. This project has received funding from the European Research
  Council (ERC) and European Commission (EC), under the European Union’s Horizon 2020
  research and innovation programme (ERC grant agreement no. 694539 to Ryuichi Shigemoto,
  no. 692692 to Peter Jonas, and the Marie Skłodowska-Curie grant agreement no. 665385
  to Cihan Önal), the Swiss National Science Foundation Grant 31003A-172881 to Bernhard
  Bettler and Deutsche Forschungsgemeinschaft (For 2143) and BIOSS-2 to Akos Kulik.
article_number: e68274
article_processing_charge: No
article_type: original
author:
- first_name: Pradeep
  full_name: Bhandari, Pradeep
  id: 45EDD1BC-F248-11E8-B48F-1D18A9856A87
  last_name: Bhandari
  orcid: 0000-0003-0863-4481
- first_name: David H
  full_name: Vandael, David H
  id: 3AE48E0A-F248-11E8-B48F-1D18A9856A87
  last_name: Vandael
  orcid: 0000-0001-7577-1676
- first_name: Diego
  full_name: Fernández-Fernández, Diego
  last_name: Fernández-Fernández
- first_name: Thorsten
  full_name: Fritzius, Thorsten
  last_name: Fritzius
- first_name: David
  full_name: Kleindienst, David
  id: 42E121A4-F248-11E8-B48F-1D18A9856A87
  last_name: Kleindienst
- first_name: Hüseyin C
  full_name: Önal, Hüseyin C
  id: 4659D740-F248-11E8-B48F-1D18A9856A87
  last_name: Önal
  orcid: 0000-0002-2771-2011
- first_name: Jacqueline-Claire
  full_name: Montanaro-Punzengruber, Jacqueline-Claire
  id: 3786AB44-F248-11E8-B48F-1D18A9856A87
  last_name: Montanaro-Punzengruber
- first_name: Martin
  full_name: Gassmann, Martin
  last_name: Gassmann
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
- first_name: Akos
  full_name: Kulik, Akos
  last_name: Kulik
- first_name: Bernhard
  full_name: Bettler, Bernhard
  last_name: Bettler
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Peter
  full_name: Koppensteiner, Peter
  id: 3B8B25A8-F248-11E8-B48F-1D18A9856A87
  last_name: Koppensteiner
  orcid: 0000-0002-3509-1948
citation:
  ama: Bhandari P, Vandael DH, Fernández-Fernández D, et al. GABAB receptor auxiliary
    subunits modulate Cav2.3-mediated release from medial habenula terminals. <i>eLife</i>.
    2021;10. doi:<a href="https://doi.org/10.7554/ELIFE.68274">10.7554/ELIFE.68274</a>
  apa: Bhandari, P., Vandael, D. H., Fernández-Fernández, D., Fritzius, T., Kleindienst,
    D., Önal, H. C., … Koppensteiner, P. (2021). GABAB receptor auxiliary subunits
    modulate Cav2.3-mediated release from medial habenula terminals. <i>ELife</i>.
    eLife Sciences Publications. <a href="https://doi.org/10.7554/ELIFE.68274">https://doi.org/10.7554/ELIFE.68274</a>
  chicago: Bhandari, Pradeep, David H Vandael, Diego Fernández-Fernández, Thorsten
    Fritzius, David Kleindienst, Hüseyin C Önal, Jacqueline-Claire Montanaro-Punzengruber,
    et al. “GABAB Receptor Auxiliary Subunits Modulate Cav2.3-Mediated Release from
    Medial Habenula Terminals.” <i>ELife</i>. eLife Sciences Publications, 2021. <a
    href="https://doi.org/10.7554/ELIFE.68274">https://doi.org/10.7554/ELIFE.68274</a>.
  ieee: P. Bhandari <i>et al.</i>, “GABAB receptor auxiliary subunits modulate Cav2.3-mediated
    release from medial habenula terminals,” <i>eLife</i>, vol. 10. eLife Sciences
    Publications, 2021.
  ista: Bhandari P, Vandael DH, Fernández-Fernández D, Fritzius T, Kleindienst D,
    Önal HC, Montanaro-Punzengruber J-C, Gassmann M, Jonas PM, Kulik A, Bettler B,
    Shigemoto R, Koppensteiner P. 2021. GABAB receptor auxiliary subunits modulate
    Cav2.3-mediated release from medial habenula terminals. eLife. 10, e68274.
  mla: Bhandari, Pradeep, et al. “GABAB Receptor Auxiliary Subunits Modulate Cav2.3-Mediated
    Release from Medial Habenula Terminals.” <i>ELife</i>, vol. 10, e68274, eLife
    Sciences Publications, 2021, doi:<a href="https://doi.org/10.7554/ELIFE.68274">10.7554/ELIFE.68274</a>.
  short: P. Bhandari, D.H. Vandael, D. Fernández-Fernández, T. Fritzius, D. Kleindienst,
    H.C. Önal, J.-C. Montanaro-Punzengruber, M. Gassmann, P.M. Jonas, A. Kulik, B.
    Bettler, R. Shigemoto, P. Koppensteiner, ELife 10 (2021).
date_created: 2021-05-30T22:01:23Z
date_published: 2021-04-29T00:00:00Z
date_updated: 2024-03-25T23:30:16Z
day: '29'
ddc:
- '570'
department:
- _id: RySh
- _id: PeJo
doi: 10.7554/ELIFE.68274
ec_funded: 1
external_id:
  isi:
  - '000651761700001'
file:
- access_level: open_access
  checksum: 6ebcb79999f889766f7cd79ee134ad28
  content_type: application/pdf
  creator: cziletti
  date_created: 2021-05-31T09:43:09Z
  date_updated: 2021-05-31T09:43:09Z
  file_id: '9440'
  file_name: 2021_eLife_Bhandari.pdf
  file_size: 8174719
  relation: main_file
  success: 1
file_date_updated: 2021-05-31T09:43:09Z
has_accepted_license: '1'
intvolume: '        10'
isi: 1
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
- _id: 25B7EB9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '692692'
  name: Biophysics and circuit function of a giant cortical glumatergic synapse
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: eLife
publication_identifier:
  eissn:
  - 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
related_material:
  link:
  - relation: earlier_version
    url: https://doi.org/10.1101/2020.04.16.045112
  record:
  - id: '9562'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: GABAB receptor auxiliary subunits modulate Cav2.3-mediated release from medial
  habenula terminals
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 10
year: '2021'
...
---
_id: '9641'
abstract:
- lang: eng
  text: At the encounter with a novel environment, contextual memory formation is
    greatly enhanced, accompanied with increased arousal and active exploration. Although
    this phenomenon has been widely observed in animal and human daily life, how the
    novelty in the environment is detected and contributes to contextual memory formation
    has lately started to be unveiled. The hippocampus has been studied for many decades
    for its largely known roles in encoding spatial memory, and a growing body of
    evidence indicates a differential involvement of dorsal and ventral hippocampal
    divisions in novelty detection. In this brief review article, we discuss the recent
    findings of the role of mossy cells in the ventral hippocampal moiety in novelty
    detection and put them in perspective with other novelty-related pathways in the
    hippocampus. We propose a mechanism for novelty-driven memory acquisition in the
    dentate gyrus by the direct projection of ventral mossy cells to dorsal dentate
    granule cells. By this projection, the ventral hippocampus sends novelty signals
    to the dorsal hippocampus, opening a gate for memory encoding in dentate granule
    cells based on information coming from the entorhinal cortex. We conclude that,
    contrary to the presently accepted functional independence, the dorsal and ventral
    hippocampi cooperate to link the novelty and contextual information, and this
    dorso-ventral interaction is crucial for the novelty-dependent memory formation.
acknowledgement: This work was supported by a European Research Council Advanced Grant
  694539 to Ryuichi Shigemoto.
article_number: '107486'
article_processing_charge: No
article_type: original
author:
- first_name: Felipe
  full_name: Fredes, Felipe
  last_name: Fredes
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: Fredes F, Shigemoto R. The role of hippocampal mossy cells in novelty detection.
    <i>Neurobiology of Learning and Memory</i>. 2021;183. doi:<a href="https://doi.org/10.1016/j.nlm.2021.107486">10.1016/j.nlm.2021.107486</a>
  apa: Fredes, F., &#38; Shigemoto, R. (2021). The role of hippocampal mossy cells
    in novelty detection. <i>Neurobiology of Learning and Memory</i>. Elsevier. <a
    href="https://doi.org/10.1016/j.nlm.2021.107486">https://doi.org/10.1016/j.nlm.2021.107486</a>
  chicago: Fredes, Felipe, and Ryuichi Shigemoto. “The Role of Hippocampal Mossy Cells
    in Novelty Detection.” <i>Neurobiology of Learning and Memory</i>. Elsevier, 2021.
    <a href="https://doi.org/10.1016/j.nlm.2021.107486">https://doi.org/10.1016/j.nlm.2021.107486</a>.
  ieee: F. Fredes and R. Shigemoto, “The role of hippocampal mossy cells in novelty
    detection,” <i>Neurobiology of Learning and Memory</i>, vol. 183. Elsevier, 2021.
  ista: Fredes F, Shigemoto R. 2021. The role of hippocampal mossy cells in novelty
    detection. Neurobiology of Learning and Memory. 183, 107486.
  mla: Fredes, Felipe, and Ryuichi Shigemoto. “The Role of Hippocampal Mossy Cells
    in Novelty Detection.” <i>Neurobiology of Learning and Memory</i>, vol. 183, 107486,
    Elsevier, 2021, doi:<a href="https://doi.org/10.1016/j.nlm.2021.107486">10.1016/j.nlm.2021.107486</a>.
  short: F. Fredes, R. Shigemoto, Neurobiology of Learning and Memory 183 (2021).
date_created: 2021-07-11T22:01:16Z
date_published: 2021-06-30T00:00:00Z
date_updated: 2023-08-10T14:10:37Z
day: '30'
ddc:
- '610'
department:
- _id: RySh
doi: 10.1016/j.nlm.2021.107486
ec_funded: 1
external_id:
  isi:
  - '000677694900004'
  pmid:
  - '34214666'
file:
- access_level: open_access
  checksum: 8e8298a9e8c7df146ad23f32c2a63929
  content_type: application/pdf
  creator: cziletti
  date_created: 2021-07-19T13:46:06Z
  date_updated: 2021-07-19T13:46:06Z
  file_id: '9694'
  file_name: 2021_NeurobLearnMemory_Fredes.pdf
  file_size: 1994793
  relation: main_file
  success: 1
file_date_updated: 2021-07-19T13:46:06Z
has_accepted_license: '1'
intvolume: '       183'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
publication: Neurobiology of Learning and Memory
publication_identifier:
  eissn:
  - '10959564'
  issn:
  - '10747427'
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: The role of hippocampal mossy cells in novelty detection
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 183
year: '2021'
...
---
_id: '10051'
abstract:
- lang: eng
  text: 'Rab-interacting molecule (RIM)-binding protein 2 (BP2) is a multidomain protein
    of the presynaptic active zone (AZ). By binding to RIM, bassoon (Bsn), and voltage-gated
    Ca2+ channels (CaV), it is considered to be a central organizer of the topography
    of CaV and release sites of synaptic vesicles (SVs) at the AZ. Here, we used RIM-BP2
    knock-out (KO) mice and their wild-type (WT) littermates of either sex to investigate
    the role of RIM-BP2 at the endbulb of Held synapse of auditory nerve fibers (ANFs)
    with bushy cells (BCs) of the cochlear nucleus, a fast relay of the auditory pathway
    with high release probability. Disruption of RIM-BP2 lowered release probability
    altering short-term plasticity and reduced evoked EPSCs. Analysis of SV pool dynamics
    during high-frequency train stimulation indicated a reduction of SVs with high
    release probability but an overall normal size of the readily releasable SV pool
    (RRP). The Ca2+-dependent fast component of SV replenishment after RRP depletion
    was slowed. Ultrastructural analysis by superresolution light and electron microscopy
    revealed an impaired topography of presynaptic CaV and a reduction of docked and
    membrane-proximal SVs at the AZ. We conclude that RIM-BP2 organizes the topography
    of CaV, and promotes SV tethering and docking. This way RIM-BP2 is critical for
    establishing a high initial release probability as required to reliably signal
    sound onset information that we found to be degraded in BCs of RIM-BP2-deficient
    mice in vivo. SIGNIFICANCE STATEMENT: Rab-interacting molecule (RIM)-binding proteins
    (BPs) are key organizers of the active zone (AZ). Using a multidisciplinary approach
    to the calyceal endbulb of Held synapse that transmits auditory information at
    rates of up to hundreds of Hertz with submillisecond precision we demonstrate
    a requirement for RIM-BP2 for normal auditory signaling. Endbulb synapses lacking
    RIM-BP2 show a reduced release probability despite normal whole-terminal Ca2+
    influx and abundance of the key priming protein Munc13-1, a reduced rate of SV
    replenishment, as well as an altered topography of voltage-gated (CaV)2.1 Ca2+
    channels, and fewer docked and membrane proximal synaptic vesicles (SVs). This
    hampers transmission of sound onset information likely affecting downstream neural
    computations such as of sound localization.'
acknowledgement: This work was supported by the Deutsche Forschungsgemeinschaft (DFG,
  German Research Foundation) through the Collaborative Sensory Research Center 1286
  [to C.W. (A4) and T.M. (B5)] and under Germany’s Excellence Strategy Grant EXC 2067/1-390729940.
  We thank S. Gerke, A.J. Goldak, and C. Senger-Freitag for expert technical assistance;
  G. Hoch for developing image analysis routines; and S. Chepurwar and N. Strenzke
  for technical support and discussion regarding in vivo experiments. We also thank
  Dr. Christian Rosenmund, Dr. Katharina Grauel, and Dr. Stephan Sigrist for providing
  RIM-BP2 KO mice and Dr. Masahiko Watanabe for providing the anti-neurexin-antibody,
  and Dr. Toshihisa Ohtsuka for the anti-ELKS-antibody. J. Neef for help with the
  STED imaging and image analysis; E. Neher and S. Rizzoli for discussion and comments
  on the manuscript; K. Eguchi for help with the statistical analysis; and C. H. Huang
  and J. Neef for constant support and scientific discussion.
article_processing_charge: No
article_type: original
author:
- first_name: Tanvi
  full_name: Butola, Tanvi
  last_name: Butola
- first_name: Theocharis
  full_name: Alvanos, Theocharis
  last_name: Alvanos
- first_name: Anika
  full_name: Hintze, Anika
  last_name: Hintze
- first_name: Peter
  full_name: Koppensteiner, Peter
  id: 3B8B25A8-F248-11E8-B48F-1D18A9856A87
  last_name: Koppensteiner
  orcid: 0000-0002-3509-1948
- first_name: David
  full_name: Kleindienst, David
  id: 42E121A4-F248-11E8-B48F-1D18A9856A87
  last_name: Kleindienst
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Carolin
  full_name: Wichmann, Carolin
  last_name: Wichmann
- first_name: Tobias
  full_name: Moser, Tobias
  last_name: Moser
citation:
  ama: Butola T, Alvanos T, Hintze A, et al. RIM-binding protein 2 organizes Ca<sup>21</sup>
    channel topography and regulates release probability and vesicle replenishment
    at a fast central synapse. <i>Journal of Neuroscience</i>. 2021;41(37):7742-7767.
    doi:<a href="https://doi.org/10.1523/JNEUROSCI.0586-21.2021">10.1523/JNEUROSCI.0586-21.2021</a>
  apa: Butola, T., Alvanos, T., Hintze, A., Koppensteiner, P., Kleindienst, D., Shigemoto,
    R., … Moser, T. (2021). RIM-binding protein 2 organizes Ca<sup>21</sup> channel
    topography and regulates release probability and vesicle replenishment at a fast
    central synapse. <i>Journal of Neuroscience</i>. Society for Neuroscience. <a
    href="https://doi.org/10.1523/JNEUROSCI.0586-21.2021">https://doi.org/10.1523/JNEUROSCI.0586-21.2021</a>
  chicago: Butola, Tanvi, Theocharis Alvanos, Anika Hintze, Peter Koppensteiner, David
    Kleindienst, Ryuichi Shigemoto, Carolin Wichmann, and Tobias Moser. “RIM-Binding
    Protein 2 Organizes Ca<sup>21</sup> Channel Topography and Regulates Release Probability
    and Vesicle Replenishment at a Fast Central Synapse.” <i>Journal of Neuroscience</i>.
    Society for Neuroscience, 2021. <a href="https://doi.org/10.1523/JNEUROSCI.0586-21.2021">https://doi.org/10.1523/JNEUROSCI.0586-21.2021</a>.
  ieee: T. Butola <i>et al.</i>, “RIM-binding protein 2 organizes Ca<sup>21</sup>
    channel topography and regulates release probability and vesicle replenishment
    at a fast central synapse,” <i>Journal of Neuroscience</i>, vol. 41, no. 37. Society
    for Neuroscience, pp. 7742–7767, 2021.
  ista: Butola T, Alvanos T, Hintze A, Koppensteiner P, Kleindienst D, Shigemoto R,
    Wichmann C, Moser T. 2021. RIM-binding protein 2 organizes Ca<sup>21</sup> channel
    topography and regulates release probability and vesicle replenishment at a fast
    central synapse. Journal of Neuroscience. 41(37), 7742–7767.
  mla: Butola, Tanvi, et al. “RIM-Binding Protein 2 Organizes Ca<sup>21</sup> Channel
    Topography and Regulates Release Probability and Vesicle Replenishment at a Fast
    Central Synapse.” <i>Journal of Neuroscience</i>, vol. 41, no. 37, Society for
    Neuroscience, 2021, pp. 7742–67, doi:<a href="https://doi.org/10.1523/JNEUROSCI.0586-21.2021">10.1523/JNEUROSCI.0586-21.2021</a>.
  short: T. Butola, T. Alvanos, A. Hintze, P. Koppensteiner, D. Kleindienst, R. Shigemoto,
    C. Wichmann, T. Moser, Journal of Neuroscience 41 (2021) 7742–7767.
date_created: 2021-09-27T14:33:13Z
date_published: 2021-09-15T00:00:00Z
date_updated: 2023-08-14T06:56:30Z
day: '15'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1523/JNEUROSCI.0586-21.2021
external_id:
  isi:
  - '000752287700005'
  pmid:
  - '34353898'
file:
- access_level: open_access
  checksum: 769ab627c7355a50ccfd445e43a5f351
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-31T09:10:15Z
  date_updated: 2022-05-31T09:10:15Z
  file_id: '11423'
  file_name: 2021_JourNeuroscience_Butola.pdf
  file_size: 11571961
  relation: main_file
  success: 1
file_date_updated: 2022-05-31T09:10:15Z
has_accepted_license: '1'
intvolume: '        41'
isi: 1
issue: '37'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 7742-7767
pmid: 1
publication: Journal of Neuroscience
publication_identifier:
  eissn:
  - 1529-2401
  issn:
  - 0270-6474
publication_status: published
publisher: Society for Neuroscience
quality_controlled: '1'
scopus_import: '1'
status: public
title: RIM-binding protein 2 organizes Ca<sup>21</sup> channel topography and regulates
  release probability and vesicle replenishment at a fast central synapse
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 41
year: '2021'
...
---
_id: '10403'
abstract:
- lang: eng
  text: Synaptic transmission, connectivity, and dendritic morphology mature in parallel
    during brain development and are often disrupted in neurodevelopmental disorders.
    Yet how these changes influence the neuronal computations necessary for normal
    brain function are not well understood. To identify cellular mechanisms underlying
    the maturation of synaptic integration in interneurons, we combined patch-clamp
    recordings of excitatory inputs in mouse cerebellar stellate cells (SCs), three-dimensional
    reconstruction of SC morphology with excitatory synapse location, and biophysical
    modeling. We found that postnatal maturation of postsynaptic strength was homogeneously
    reduced along the somatodendritic axis, but dendritic integration was always sublinear.
    However, dendritic branching increased without changes in synapse density, leading
    to a substantial gain in distal inputs. Thus, changes in synapse distribution,
    rather than dendrite cable properties, are the dominant mechanism underlying the
    maturation of neuronal computation. These mechanisms favor the emergence of a
    spatially compartmentalized two-stage integration model promoting location-dependent
    integration within dendritic subunits.
acknowledgement: This study was supported by the Centre National de la Recherche Scientifique
  and the Agence Nationale de la Recherche (ANR-13-BSV4-00166, to LC and DAD). TA
  was supported by fellowships from the Fondation pour la Recherche Medicale and the
  Swedish Research Council. We thank Dmitry Ershov from the Image Analysis Hub of
  the Institut Pasteur, Elodie Le Monnier, Elena Hollergschwandtner, Vanessa Zheden,
  and Corinne Nantet for technical support and Haining Zhong for providing the Venus-tagged
  PSD95 mouse line. We would like to thank Alberto Bacci, Ann Lohof, and Nelson Rebola
  for comments on the manuscript.
article_number: e65954
article_processing_charge: No
article_type: original
author:
- first_name: Celia
  full_name: Biane, Celia
  last_name: Biane
- first_name: Florian
  full_name: Rückerl, Florian
  last_name: Rückerl
- first_name: Therese
  full_name: Abrahamsson, Therese
  last_name: Abrahamsson
- first_name: Cécile
  full_name: Saint-Cloment, Cécile
  last_name: Saint-Cloment
- first_name: Jean
  full_name: Mariani, Jean
  last_name: Mariani
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: David A.
  full_name: Digregorio, David A.
  last_name: Digregorio
- first_name: Rachel M.
  full_name: Sherrard, Rachel M.
  last_name: Sherrard
- first_name: Laurence
  full_name: Cathala, Laurence
  last_name: Cathala
citation:
  ama: Biane C, Rückerl F, Abrahamsson T, et al. Developmental emergence of two-stage
    nonlinear synaptic integration in cerebellar interneurons. <i>eLife</i>. 2021;10.
    doi:<a href="https://doi.org/10.7554/eLife.65954">10.7554/eLife.65954</a>
  apa: Biane, C., Rückerl, F., Abrahamsson, T., Saint-Cloment, C., Mariani, J., Shigemoto,
    R., … Cathala, L. (2021). Developmental emergence of two-stage nonlinear synaptic
    integration in cerebellar interneurons. <i>ELife</i>. eLife Sciences Publications.
    <a href="https://doi.org/10.7554/eLife.65954">https://doi.org/10.7554/eLife.65954</a>
  chicago: Biane, Celia, Florian Rückerl, Therese Abrahamsson, Cécile Saint-Cloment,
    Jean Mariani, Ryuichi Shigemoto, David A. Digregorio, Rachel M. Sherrard, and
    Laurence Cathala. “Developmental Emergence of Two-Stage Nonlinear Synaptic Integration
    in Cerebellar Interneurons.” <i>ELife</i>. eLife Sciences Publications, 2021.
    <a href="https://doi.org/10.7554/eLife.65954">https://doi.org/10.7554/eLife.65954</a>.
  ieee: C. Biane <i>et al.</i>, “Developmental emergence of two-stage nonlinear synaptic
    integration in cerebellar interneurons,” <i>eLife</i>, vol. 10. eLife Sciences
    Publications, 2021.
  ista: Biane C, Rückerl F, Abrahamsson T, Saint-Cloment C, Mariani J, Shigemoto R,
    Digregorio DA, Sherrard RM, Cathala L. 2021. Developmental emergence of two-stage
    nonlinear synaptic integration in cerebellar interneurons. eLife. 10, e65954.
  mla: Biane, Celia, et al. “Developmental Emergence of Two-Stage Nonlinear Synaptic
    Integration in Cerebellar Interneurons.” <i>ELife</i>, vol. 10, e65954, eLife
    Sciences Publications, 2021, doi:<a href="https://doi.org/10.7554/eLife.65954">10.7554/eLife.65954</a>.
  short: C. Biane, F. Rückerl, T. Abrahamsson, C. Saint-Cloment, J. Mariani, R. Shigemoto,
    D.A. Digregorio, R.M. Sherrard, L. Cathala, ELife 10 (2021).
date_created: 2021-12-05T23:01:40Z
date_published: 2021-11-03T00:00:00Z
date_updated: 2023-08-14T13:12:07Z
day: '03'
ddc:
- '570'
department:
- _id: RySh
doi: 10.7554/eLife.65954
external_id:
  isi:
  - '000715789500001'
file:
- access_level: open_access
  checksum: c7c33c3319428d56e332e22349c50ed3
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-12-10T08:31:41Z
  date_updated: 2021-12-10T08:31:41Z
  file_id: '10528'
  file_name: 2021_eLife_Biane.pdf
  file_size: 13131322
  relation: main_file
  success: 1
file_date_updated: 2021-12-10T08:31:41Z
has_accepted_license: '1'
intvolume: '        10'
isi: 1
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
publication: eLife
publication_identifier:
  eissn:
  - 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Developmental emergence of two-stage nonlinear synaptic integration in cerebellar
  interneurons
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 10
year: '2021'
...
---
_id: '9756'
abstract:
- lang: eng
  text: High-resolution visualization and quantification of membrane proteins contribute
    to the understanding of their functions and the roles they play in physiological
    and pathological conditions. Sodium dodecyl sulfate-digested freeze-fracture replica
    labeling (SDS-FRL) is a powerful electron microscopy method to study quantitatively
    the two-dimensional distribution of transmembrane proteins and their tightly associated
    proteins. During treatment with SDS, intracellular organelles and proteins not
    anchored to the replica are dissolved, whereas integral membrane proteins captured
    and stabilized by carbon/platinum deposition remain on the replica. Their intra-
    and extracellular domains become exposed on the surface of the replica, facilitating
    the accessibility of antibodies and, therefore, providing higher labeling efficiency
    than those obtained with other immunoelectron microscopy techniques. In this chapter,
    we describe the protocols of SDS-FRL adapted for mammalian brain samples, and
    optimization of the SDS treatment to increase the labeling efficiency for quantification
    of Cav2.1, the alpha subunit of P/Q-type voltage-dependent calcium channels utilizing
    deep learning algorithms.
acknowledgement: This work was supported by the European Union (European Research
  Council Advanced grant no. 694539 and Human Brain Project Ref. 720270 to R. S.)
  and the Austrian Academy of Sciences (DOC fellowship to D.K.).
alternative_title:
- Neuromethods
article_processing_charge: No
author:
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: David
  full_name: Kleindienst, David
  id: 42E121A4-F248-11E8-B48F-1D18A9856A87
  last_name: Kleindienst
- first_name: Harumi
  full_name: Harada, Harumi
  id: 2E55CDF2-F248-11E8-B48F-1D18A9856A87
  last_name: Harada
  orcid: 0000-0001-7429-7896
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: 'Kaufmann W, Kleindienst D, Harada H, Shigemoto R. High-Resolution localization
    and quantitation of membrane proteins by SDS-digested freeze-fracture replica
    labeling (SDS-FRL). In: <i> Receptor and Ion Channel Detection in the Brain</i>.
    Vol 169. Neuromethods. New York: Humana; 2021:267-283. doi:<a href="https://doi.org/10.1007/978-1-0716-1522-5_19">10.1007/978-1-0716-1522-5_19</a>'
  apa: 'Kaufmann, W., Kleindienst, D., Harada, H., &#38; Shigemoto, R. (2021). High-Resolution
    localization and quantitation of membrane proteins by SDS-digested freeze-fracture
    replica labeling (SDS-FRL). In <i> Receptor and Ion Channel Detection in the Brain</i>
    (Vol. 169, pp. 267–283). New York: Humana. <a href="https://doi.org/10.1007/978-1-0716-1522-5_19">https://doi.org/10.1007/978-1-0716-1522-5_19</a>'
  chicago: 'Kaufmann, Walter, David Kleindienst, Harumi Harada, and Ryuichi Shigemoto.
    “High-Resolution Localization and Quantitation of Membrane Proteins by SDS-Digested
    Freeze-Fracture Replica Labeling (SDS-FRL).” In <i> Receptor and Ion Channel Detection
    in the Brain</i>, 169:267–83. Neuromethods. New York: Humana, 2021. <a href="https://doi.org/10.1007/978-1-0716-1522-5_19">https://doi.org/10.1007/978-1-0716-1522-5_19</a>.'
  ieee: 'W. Kaufmann, D. Kleindienst, H. Harada, and R. Shigemoto, “High-Resolution
    localization and quantitation of membrane proteins by SDS-digested freeze-fracture
    replica labeling (SDS-FRL),” in <i> Receptor and Ion Channel Detection in the
    Brain</i>, vol. 169, New York: Humana, 2021, pp. 267–283.'
  ista: 'Kaufmann W, Kleindienst D, Harada H, Shigemoto R. 2021.High-Resolution localization
    and quantitation of membrane proteins by SDS-digested freeze-fracture replica
    labeling (SDS-FRL). In:  Receptor and Ion Channel Detection in the Brain. Neuromethods,
    vol. 169, 267–283.'
  mla: Kaufmann, Walter, et al. “High-Resolution Localization and Quantitation of
    Membrane Proteins by SDS-Digested Freeze-Fracture Replica Labeling (SDS-FRL).”
    <i> Receptor and Ion Channel Detection in the Brain</i>, vol. 169, Humana, 2021,
    pp. 267–83, doi:<a href="https://doi.org/10.1007/978-1-0716-1522-5_19">10.1007/978-1-0716-1522-5_19</a>.
  short: W. Kaufmann, D. Kleindienst, H. Harada, R. Shigemoto, in:,  Receptor and
    Ion Channel Detection in the Brain, Humana, New York, 2021, pp. 267–283.
date_created: 2021-07-30T09:34:56Z
date_published: 2021-07-27T00:00:00Z
date_updated: 2024-03-25T23:30:16Z
day: '27'
ddc:
- '573'
department:
- _id: RySh
- _id: EM-Fac
doi: 10.1007/978-1-0716-1522-5_19
ec_funded: 1
has_accepted_license: '1'
intvolume: '       169'
keyword:
- 'Freeze-fracture replica: Deep learning'
- Immunogold labeling
- Integral membrane protein
- Electron microscopy
language:
- iso: eng
month: '07'
oa_version: None
page: 267-283
place: New York
project:
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
- _id: 25CBA828-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '720270'
  name: Human Brain Project Specific Grant Agreement 1 (HBP SGA 1)
publication: ' Receptor and Ion Channel Detection in the Brain'
publication_identifier:
  eisbn:
  - '9781071615225'
  isbn:
  - '9781071615218'
publication_status: published
publisher: Humana
quality_controlled: '1'
related_material:
  record:
  - id: '9562'
    relation: dissertation_contains
    status: public
series_title: Neuromethods
status: public
title: High-Resolution localization and quantitation of membrane proteins by SDS-digested
  freeze-fracture replica labeling (SDS-FRL)
type: book_chapter
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 169
year: '2021'
...
---
_id: '7878'
abstract:
- lang: eng
  text: Type 1 metabotropic glutamate receptors (mGluR1s) are key elements in neuronal
    signaling. While their function is well documented in slices, requirements for
    their activation in vivo are poorly understood. We examine this question in adult
    mice in vivo using 2-photon imaging of cerebellar molecular layer interneurons
    (MLIs) expressing GCaMP. In anesthetized mice, parallel fiber activation evokes
    beam-like Cai rises in postsynaptic MLIs which depend on co-activation of mGluR1s
    and ionotropic glutamate receptors (iGluRs). In awake mice, blocking mGluR1 decreases
    Cai rises associated with locomotion. In vitro studies and freeze-fracture electron
    microscopy show that the iGluR-mGluR1 interaction is synergistic and favored by
    close association of the two classes of receptors. Altogether our results suggest
    that mGluR1s, acting in synergy with iGluRs, potently contribute to processing
    cerebellar neuronal signaling under physiological conditions.
article_number: e56839
article_processing_charge: No
article_type: original
author:
- first_name: Jin
  full_name: Bao, Jin
  last_name: Bao
- first_name: Michael
  full_name: Graupner, Michael
  last_name: Graupner
- first_name: Guadalupe
  full_name: Astorga, Guadalupe
  last_name: Astorga
- first_name: Thibault
  full_name: Collin, Thibault
  last_name: Collin
- first_name: Abdelali
  full_name: Jalil, Abdelali
  last_name: Jalil
- first_name: Dwi Wahyu
  full_name: Indriati, Dwi Wahyu
  last_name: Indriati
- first_name: Jonathan
  full_name: Bradley, Jonathan
  last_name: Bradley
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Isabel
  full_name: Llano, Isabel
  last_name: Llano
citation:
  ama: Bao J, Graupner M, Astorga G, et al. Synergism of type 1 metabotropic and ionotropic
    glutamate receptors in cerebellar molecular layer interneurons in vivo. <i>eLife</i>.
    2020;9. doi:<a href="https://doi.org/10.7554/eLife.56839">10.7554/eLife.56839</a>
  apa: Bao, J., Graupner, M., Astorga, G., Collin, T., Jalil, A., Indriati, D. W.,
    … Llano, I. (2020). Synergism of type 1 metabotropic and ionotropic glutamate
    receptors in cerebellar molecular layer interneurons in vivo. <i>ELife</i>. eLife
    Sciences Publications. <a href="https://doi.org/10.7554/eLife.56839">https://doi.org/10.7554/eLife.56839</a>
  chicago: Bao, Jin, Michael Graupner, Guadalupe Astorga, Thibault Collin, Abdelali
    Jalil, Dwi Wahyu Indriati, Jonathan Bradley, Ryuichi Shigemoto, and Isabel Llano.
    “Synergism of Type 1 Metabotropic and Ionotropic Glutamate Receptors in Cerebellar
    Molecular Layer Interneurons in Vivo.” <i>ELife</i>. eLife Sciences Publications,
    2020. <a href="https://doi.org/10.7554/eLife.56839">https://doi.org/10.7554/eLife.56839</a>.
  ieee: J. Bao <i>et al.</i>, “Synergism of type 1 metabotropic and ionotropic glutamate
    receptors in cerebellar molecular layer interneurons in vivo,” <i>eLife</i>, vol.
    9. eLife Sciences Publications, 2020.
  ista: Bao J, Graupner M, Astorga G, Collin T, Jalil A, Indriati DW, Bradley J, Shigemoto
    R, Llano I. 2020. Synergism of type 1 metabotropic and ionotropic glutamate receptors
    in cerebellar molecular layer interneurons in vivo. eLife. 9, e56839.
  mla: Bao, Jin, et al. “Synergism of Type 1 Metabotropic and Ionotropic Glutamate
    Receptors in Cerebellar Molecular Layer Interneurons in Vivo.” <i>ELife</i>, vol.
    9, e56839, eLife Sciences Publications, 2020, doi:<a href="https://doi.org/10.7554/eLife.56839">10.7554/eLife.56839</a>.
  short: J. Bao, M. Graupner, G. Astorga, T. Collin, A. Jalil, D.W. Indriati, J. Bradley,
    R. Shigemoto, I. Llano, ELife 9 (2020).
date_created: 2020-05-24T22:00:58Z
date_published: 2020-05-13T00:00:00Z
date_updated: 2023-08-21T06:26:50Z
day: '13'
ddc:
- '570'
department:
- _id: RySh
doi: 10.7554/eLife.56839
external_id:
  isi:
  - '000535191600001'
  pmid:
  - '32401196'
file:
- access_level: open_access
  checksum: 8ea99bb6660cc407dbdb00c173b01683
  content_type: application/pdf
  creator: dernst
  date_created: 2020-05-26T09:34:54Z
  date_updated: 2020-07-14T12:48:04Z
  file_id: '7891'
  file_name: 2020_eLife_Bao.pdf
  file_size: 4832050
  relation: main_file
file_date_updated: 2020-07-14T12:48:04Z
has_accepted_license: '1'
intvolume: '         9'
isi: 1
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
publication: eLife
publication_identifier:
  eissn:
  - 2050084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Synergism of type 1 metabotropic and ionotropic glutamate receptors in cerebellar
  molecular layer interneurons in vivo
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 9
year: '2020'
...
---
_id: '8532'
abstract:
- lang: eng
  text: The molecular anatomy of synapses defines their characteristics in transmission
    and plasticity. Precise measurements of the number and distribution of synaptic
    proteins are important for our understanding of synapse heterogeneity within and
    between brain regions. Freeze–fracture replica immunogold electron microscopy
    enables us to analyze them quantitatively on a two-dimensional membrane surface.
    Here, we introduce Darea software, which utilizes deep learning for analysis of
    replica images and demonstrate its usefulness for quick measurements of the pre-
    and postsynaptic areas, density and distribution of gold particles at synapses
    in a reproducible manner. We used Darea for comparing glutamate receptor and calcium
    channel distributions between hippocampal CA3-CA1 spine synapses on apical and
    basal dendrites, which differ in signaling pathways involved in synaptic plasticity.
    We found that apical synapses express a higher density of α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic
    acid (AMPA) receptors and a stronger increase of AMPA receptors with synaptic
    size, while basal synapses show a larger increase in N-methyl-D-aspartate (NMDA)
    receptors with size. Interestingly, AMPA and NMDA receptors are segregated within
    postsynaptic sites and negatively correlated in density among both apical and
    basal synapses. In the presynaptic sites, Cav2.1 voltage-gated calcium channels
    show similar densities in apical and basal synapses with distributions consistent
    with an exclusion zone model of calcium channel-release site topography.
acknowledgement: "This research was funded by Austrian Academy of Sciences, DOC fellowship
  to D.K., European Research\r\nCouncil Advanced Grant 694539 and European Union Human
  Brain Project (HBP) SGA2 785907 to R.S.\r\nWe acknowledge Elena Hollergschwandtner
  for technical support."
article_number: '6737'
article_processing_charge: No
article_type: original
author:
- first_name: David
  full_name: Kleindienst, David
  id: 42E121A4-F248-11E8-B48F-1D18A9856A87
  last_name: Kleindienst
- first_name: Jacqueline-Claire
  full_name: Montanaro-Punzengruber, Jacqueline-Claire
  id: 3786AB44-F248-11E8-B48F-1D18A9856A87
  last_name: Montanaro-Punzengruber
- first_name: Pradeep
  full_name: Bhandari, Pradeep
  id: 45EDD1BC-F248-11E8-B48F-1D18A9856A87
  last_name: Bhandari
  orcid: 0000-0003-0863-4481
- first_name: Matthew J
  full_name: Case, Matthew J
  id: 44B7CA5A-F248-11E8-B48F-1D18A9856A87
  last_name: Case
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: Kleindienst D, Montanaro-Punzengruber J-C, Bhandari P, Case MJ, Fukazawa Y,
    Shigemoto R. Deep learning-assisted high-throughput analysis of freeze-fracture
    replica images applied to glutamate receptors and calcium channels at hippocampal
    synapses. <i>International Journal of Molecular Sciences</i>. 2020;21(18). doi:<a
    href="https://doi.org/10.3390/ijms21186737">10.3390/ijms21186737</a>
  apa: Kleindienst, D., Montanaro-Punzengruber, J.-C., Bhandari, P., Case, M. J.,
    Fukazawa, Y., &#38; Shigemoto, R. (2020). Deep learning-assisted high-throughput
    analysis of freeze-fracture replica images applied to glutamate receptors and
    calcium channels at hippocampal synapses. <i>International Journal of Molecular
    Sciences</i>. MDPI. <a href="https://doi.org/10.3390/ijms21186737">https://doi.org/10.3390/ijms21186737</a>
  chicago: Kleindienst, David, Jacqueline-Claire Montanaro-Punzengruber, Pradeep Bhandari,
    Matthew J Case, Yugo Fukazawa, and Ryuichi Shigemoto. “Deep Learning-Assisted
    High-Throughput Analysis of Freeze-Fracture Replica Images Applied to Glutamate
    Receptors and Calcium Channels at Hippocampal Synapses.” <i>International Journal
    of Molecular Sciences</i>. MDPI, 2020. <a href="https://doi.org/10.3390/ijms21186737">https://doi.org/10.3390/ijms21186737</a>.
  ieee: D. Kleindienst, J.-C. Montanaro-Punzengruber, P. Bhandari, M. J. Case, Y.
    Fukazawa, and R. Shigemoto, “Deep learning-assisted high-throughput analysis of
    freeze-fracture replica images applied to glutamate receptors and calcium channels
    at hippocampal synapses,” <i>International Journal of Molecular Sciences</i>,
    vol. 21, no. 18. MDPI, 2020.
  ista: Kleindienst D, Montanaro-Punzengruber J-C, Bhandari P, Case MJ, Fukazawa Y,
    Shigemoto R. 2020. Deep learning-assisted high-throughput analysis of freeze-fracture
    replica images applied to glutamate receptors and calcium channels at hippocampal
    synapses. International Journal of Molecular Sciences. 21(18), 6737.
  mla: Kleindienst, David, et al. “Deep Learning-Assisted High-Throughput Analysis
    of Freeze-Fracture Replica Images Applied to Glutamate Receptors and Calcium Channels
    at Hippocampal Synapses.” <i>International Journal of Molecular Sciences</i>,
    vol. 21, no. 18, 6737, MDPI, 2020, doi:<a href="https://doi.org/10.3390/ijms21186737">10.3390/ijms21186737</a>.
  short: D. Kleindienst, J.-C. Montanaro-Punzengruber, P. Bhandari, M.J. Case, Y.
    Fukazawa, R. Shigemoto, International Journal of Molecular Sciences 21 (2020).
date_created: 2020-09-20T22:01:35Z
date_published: 2020-09-14T00:00:00Z
date_updated: 2024-03-25T23:30:16Z
day: '14'
ddc:
- '570'
department:
- _id: RySh
doi: 10.3390/ijms21186737
ec_funded: 1
external_id:
  isi:
  - '000579945300001'
file:
- access_level: open_access
  checksum: 2e4f62f3cfe945b7391fc3070e5a289f
  content_type: application/pdf
  creator: dernst
  date_created: 2020-09-21T14:08:58Z
  date_updated: 2020-09-21T14:08:58Z
  file_id: '8551'
  file_name: 2020_JournMolecSciences_Kleindienst.pdf
  file_size: 5748456
  relation: main_file
  success: 1
file_date_updated: 2020-09-21T14:08:58Z
has_accepted_license: '1'
intvolume: '        21'
isi: 1
issue: '18'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
- _id: 25D32BC0-B435-11E9-9278-68D0E5697425
  name: Mechanism of formation and maintenance of input side-dependent asymmetry in
    the hippocampus
- _id: 26436750-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '785907'
  name: Human Brain Project Specific Grant Agreement 2 (HBP SGA 2)
publication: International Journal of Molecular Sciences
publication_identifier:
  eissn:
  - '14220067'
  issn:
  - '16616596'
publication_status: published
publisher: MDPI
quality_controlled: '1'
related_material:
  record:
  - id: '9562'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Deep learning-assisted high-throughput analysis of freeze-fracture replica
  images applied to glutamate receptors and calcium channels at hippocampal synapses
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 21
year: '2020'
...
---
_id: '7148'
abstract:
- lang: eng
  text: In the cerebellum, GluD2 is exclusively expressed in Purkinje cells, where
    it regulates synapse formation and regeneration, synaptic plasticity, and motor
    learning. Delayed cognitive development in humans with GluD2 gene mutations suggests
    extracerebellar functions of GluD2. However, extracerebellar expression of GluD2
    and its relationship with that of GluD1 are poorly understood. GluD2 mRNA and
    protein were widely detected, with relatively high levels observed in the olfactory
    glomerular layer, medial prefrontal cortex, cingulate cortex, retrosplenial granular
    cortex, olfactory tubercle, subiculum, striatum, lateral septum, anterodorsal
    thalamic nucleus, and arcuate hypothalamic nucleus. These regions were also enriched
    for GluD1, and many individual neurons coexpressed the two GluDs. In the retrosplenial
    granular cortex, GluD1 and GluD2 were selectively expressed at PSD‐95‐expressing
    glutamatergic synapses, and their coexpression on the same synapses was shown
    by SDS‐digested freeze‐fracture replica labeling. Biochemically, GluD1 and GluD2
    formed coimmunoprecipitable complex formation in HEK293T cells and in the cerebral
    cortex and hippocampus. We further estimated the relative protein amount by quantitative
    immunoblotting using GluA2/GluD2 and GluA2/GluD1 chimeric proteins as standards
    for titration of GluD1 and GluD2 antibodies. Intriguingly, the relative amount
    of GluD2 was almost comparable to that of GluD1 in the postsynaptic density fraction
    prepared from the cerebral cortex and hippocampus. In contrast, GluD2 was overwhelmingly
    predominant in the cerebellum. Thus, we have determined the relative extracerebellar
    expression of GluD1 and GluD2 at regional, neuronal, and synaptic levels. These
    data provide a molecular–anatomical basis for possible competitive and cooperative
    interactions of GluD family members at synapses in various brain regions.
acknowledgement: This study was supported by Grants-in-Aid for Scientific Research
  to K.K. (18K06813), Y.M. (17K08503, 17H0631319), and K.S. (16H04650) and a grant
  for Scientific Research on Innovative Areas to K.S (16H06276) from the Ministry
  of Education, Culture, Sports, Science and Technology of Japan (MEXT). We thank
  K. Akashi, I. Watanabe-Iida, Y. Suzuki, and H. Azechi for technical assistance and
  advice, and H. Uchida for valuable discussions. We thank E. Kushiya,I. Yabe, C.
  Ohori, Y. Mochizuki, Y. Ishikawa, and N. Ishimoto for technical assistance in generating
  GluD1-KO mice.
article_processing_charge: No
article_type: original
author:
- first_name: Chihiro
  full_name: Nakamoto, Chihiro
  last_name: Nakamoto
- first_name: Kohtarou
  full_name: Konno, Kohtarou
  last_name: Konno
- first_name: Taisuke
  full_name: Miyazaki, Taisuke
  last_name: Miyazaki
- first_name: Ena
  full_name: Nakatsukasa, Ena
  last_name: Nakatsukasa
- first_name: Rie
  full_name: Natsume, Rie
  last_name: Natsume
- first_name: Manabu
  full_name: Abe, Manabu
  last_name: Abe
- first_name: Meiko
  full_name: Kawamura, Meiko
  last_name: Kawamura
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Miwako
  full_name: Yamasaki, Miwako
  last_name: Yamasaki
- first_name: Kenji
  full_name: Sakimura, Kenji
  last_name: Sakimura
- first_name: Masahiko
  full_name: Watanabe, Masahiko
  last_name: Watanabe
citation:
  ama: Nakamoto C, Konno K, Miyazaki T, et al. Expression mapping, quantification,
    and complex formation of GluD1 and GluD2 glutamate receptors in adult mouse brain.
    <i>Journal of Comparative Neurology</i>. 2020;528(6):1003-1027. doi:<a href="https://doi.org/10.1002/cne.24792">10.1002/cne.24792</a>
  apa: Nakamoto, C., Konno, K., Miyazaki, T., Nakatsukasa, E., Natsume, R., Abe, M.,
    … Watanabe, M. (2020). Expression mapping, quantification, and complex formation
    of GluD1 and GluD2 glutamate receptors in adult mouse brain. <i>Journal of Comparative
    Neurology</i>. Wiley. <a href="https://doi.org/10.1002/cne.24792">https://doi.org/10.1002/cne.24792</a>
  chicago: Nakamoto, Chihiro, Kohtarou Konno, Taisuke Miyazaki, Ena Nakatsukasa, Rie
    Natsume, Manabu Abe, Meiko Kawamura, et al. “Expression Mapping, Quantification,
    and Complex Formation of GluD1 and GluD2 Glutamate Receptors in Adult Mouse Brain.”
    <i>Journal of Comparative Neurology</i>. Wiley, 2020. <a href="https://doi.org/10.1002/cne.24792">https://doi.org/10.1002/cne.24792</a>.
  ieee: C. Nakamoto <i>et al.</i>, “Expression mapping, quantification, and complex
    formation of GluD1 and GluD2 glutamate receptors in adult mouse brain,” <i>Journal
    of Comparative Neurology</i>, vol. 528, no. 6. Wiley, pp. 1003–1027, 2020.
  ista: Nakamoto C, Konno K, Miyazaki T, Nakatsukasa E, Natsume R, Abe M, Kawamura
    M, Fukazawa Y, Shigemoto R, Yamasaki M, Sakimura K, Watanabe M. 2020. Expression
    mapping, quantification, and complex formation of GluD1 and GluD2 glutamate receptors
    in adult mouse brain. Journal of Comparative Neurology. 528(6), 1003–1027.
  mla: Nakamoto, Chihiro, et al. “Expression Mapping, Quantification, and Complex
    Formation of GluD1 and GluD2 Glutamate Receptors in Adult Mouse Brain.” <i>Journal
    of Comparative Neurology</i>, vol. 528, no. 6, Wiley, 2020, pp. 1003–27, doi:<a
    href="https://doi.org/10.1002/cne.24792">10.1002/cne.24792</a>.
  short: C. Nakamoto, K. Konno, T. Miyazaki, E. Nakatsukasa, R. Natsume, M. Abe, M.
    Kawamura, Y. Fukazawa, R. Shigemoto, M. Yamasaki, K. Sakimura, M. Watanabe, Journal
    of Comparative Neurology 528 (2020) 1003–1027.
date_created: 2019-12-04T16:09:29Z
date_published: 2020-04-01T00:00:00Z
date_updated: 2023-08-17T14:06:50Z
day: '01'
ddc:
- '571'
- '599'
department:
- _id: RySh
doi: 10.1002/cne.24792
external_id:
  isi:
  - '000496410200001'
  pmid:
  - '31625608'
has_accepted_license: '1'
intvolume: '       528'
isi: 1
issue: '6'
language:
- iso: eng
month: '04'
oa_version: None
page: 1003-1027
pmid: 1
publication: Journal of Comparative Neurology
publication_identifier:
  eissn:
  - 1096-9861
  issn:
  - 0021-9967
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Expression mapping, quantification, and complex formation of GluD1 and GluD2
  glutamate receptors in adult mouse brain
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 528
year: '2020'
...
---
_id: '7207'
abstract:
- lang: eng
  text: The hippocampus plays key roles in learning and memory and is a main target
    of Alzheimer's disease (AD), which causes progressive memory impairments. Despite
    numerous investigations about the processes required for the normal hippocampal
    functions, the neurotransmitter receptors involved in the synaptic deficits by
    which AD disables the hippocampus are not yet characterized. By combining histoblots,
    western blots, immunohistochemistry and high‐resolution immunoelectron microscopic
    methods for GABAB receptors, this study provides a quantitative description of
    the expression and the subcellular localization of GABAB1 in the hippocampus in
    a mouse model of AD at 1, 6 and 12 months of age. Western blots and histoblots
    showed that the total amount of protein and the laminar expression pattern of
    GABAB1 were similar in APP/PS1 mice and in age‐matched wild‐type mice. In contrast,
    immunoelectron microscopic techniques showed that the subcellular localization
    of GABAB1 subunit did not change significantly in APP/PS1 mice at 1 month of age,
    was significantly reduced in the stratum lacunosum‐moleculare of CA1 pyramidal
    cells at 6 months of age and significantly reduced at the membrane surface of
    CA1 pyramidal cells at 12 months of age. This reduction of plasma membrane GABAB1
    was paralleled by a significant increase of the subunit at the intracellular sites.
    We further observed a decrease of membrane‐targeted GABAB receptors in axon terminals
    contacting CA1 pyramidal cells. Our data demonstrate compartment‐ and age‐dependent
    reduction of plasma membrane‐targeted GABAB receptors in the CA1 region of the
    hippocampus, suggesting that this decrease might be enough to alter the GABAB‐mediated
    synaptic transmission taking place in AD.
article_processing_charge: No
article_type: original
author:
- first_name: Alejandro
  full_name: Martín-Belmonte, Alejandro
  last_name: Martín-Belmonte
- first_name: Carolina
  full_name: Aguado, Carolina
  last_name: Aguado
- first_name: Rocío
  full_name: Alfaro-Ruíz, Rocío
  last_name: Alfaro-Ruíz
- first_name: Ana Esther
  full_name: Moreno-Martínez, Ana Esther
  last_name: Moreno-Martínez
- first_name: Luis
  full_name: De La Ossa, Luis
  last_name: De La Ossa
- first_name: José
  full_name: Martínez-Hernández, José
  last_name: Martínez-Hernández
- first_name: Alain
  full_name: Buisson, Alain
  last_name: Buisson
- first_name: Simon
  full_name: Früh, Simon
  last_name: Früh
- first_name: Bernhard
  full_name: Bettler, Bernhard
  last_name: Bettler
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Rafael
  full_name: Luján, Rafael
  last_name: Luján
citation:
  ama: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, et al. Reduction in the neuronal
    surface of post and presynaptic GABA&#62;B&#60; receptors in the hippocampus in
    a mouse model of Alzheimer’s disease. <i>Brain Pathology</i>. 2020;30(3):554-575.
    doi:<a href="https://doi.org/10.1111/bpa.12802">10.1111/bpa.12802</a>
  apa: Martín-Belmonte, A., Aguado, C., Alfaro-Ruíz, R., Moreno-Martínez, A. E., De
    La Ossa, L., Martínez-Hernández, J., … Luján, R. (2020). Reduction in the neuronal
    surface of post and presynaptic GABA&#62;B&#60; receptors in the hippocampus in
    a mouse model of Alzheimer’s disease. <i>Brain Pathology</i>. Wiley. <a href="https://doi.org/10.1111/bpa.12802">https://doi.org/10.1111/bpa.12802</a>
  chicago: Martín-Belmonte, Alejandro, Carolina Aguado, Rocío Alfaro-Ruíz, Ana Esther
    Moreno-Martínez, Luis De La Ossa, José Martínez-Hernández, Alain Buisson, et al.
    “Reduction in the Neuronal Surface of Post and Presynaptic GABA&#62;B&#60; Receptors
    in the Hippocampus in a Mouse Model of Alzheimer’s Disease.” <i>Brain Pathology</i>.
    Wiley, 2020. <a href="https://doi.org/10.1111/bpa.12802">https://doi.org/10.1111/bpa.12802</a>.
  ieee: A. Martín-Belmonte <i>et al.</i>, “Reduction in the neuronal surface of post
    and presynaptic GABA&#62;B&#60; receptors in the hippocampus in a mouse model
    of Alzheimer’s disease,” <i>Brain Pathology</i>, vol. 30, no. 3. Wiley, pp. 554–575,
    2020.
  ista: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, Moreno-Martínez AE, De La Ossa
    L, Martínez-Hernández J, Buisson A, Früh S, Bettler B, Shigemoto R, Fukazawa Y,
    Luján R. 2020. Reduction in the neuronal surface of post and presynaptic GABA&#62;B&#60;
    receptors in the hippocampus in a mouse model of Alzheimer’s disease. Brain Pathology.
    30(3), 554–575.
  mla: Martín-Belmonte, Alejandro, et al. “Reduction in the Neuronal Surface of Post
    and Presynaptic GABA&#62;B&#60; Receptors in the Hippocampus in a Mouse Model
    of Alzheimer’s Disease.” <i>Brain Pathology</i>, vol. 30, no. 3, Wiley, 2020,
    pp. 554–75, doi:<a href="https://doi.org/10.1111/bpa.12802">10.1111/bpa.12802</a>.
  short: A. Martín-Belmonte, C. Aguado, R. Alfaro-Ruíz, A.E. Moreno-Martínez, L. De
    La Ossa, J. Martínez-Hernández, A. Buisson, S. Früh, B. Bettler, R. Shigemoto,
    Y. Fukazawa, R. Luján, Brain Pathology 30 (2020) 554–575.
date_created: 2019-12-22T23:00:43Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2023-09-06T14:48:01Z
day: '01'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1111/bpa.12802
ec_funded: 1
external_id:
  isi:
  - '000502270900001'
  pmid:
  - '31729777'
file:
- access_level: open_access
  checksum: 549cc1b18f638a21d17a939ba5563fa9
  content_type: application/pdf
  creator: dernst
  date_created: 2020-09-22T09:47:19Z
  date_updated: 2020-09-22T09:47:19Z
  file_id: '8554'
  file_name: 2020_BrainPathology_MartinBelmonte.pdf
  file_size: 4220935
  relation: main_file
  success: 1
file_date_updated: 2020-09-22T09:47:19Z
has_accepted_license: '1'
intvolume: '        30'
isi: 1
issue: '3'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 554-575
pmid: 1
project:
- _id: 25CBA828-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '720270'
  name: Human Brain Project Specific Grant Agreement 1 (HBP SGA 1)
- _id: 26436750-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '785907'
  name: Human Brain Project Specific Grant Agreement 2 (HBP SGA 2)
publication: Brain Pathology
publication_identifier:
  eissn:
  - '17503639'
  issn:
  - '10156305'
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Reduction in the neuronal surface of post and presynaptic GABA>B< receptors
  in the hippocampus in a mouse model of Alzheimer's disease
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 30
year: '2020'
...
---
_id: '7664'
abstract:
- lang: eng
  text: Metabotropic γ-aminobutyric acid (GABAB) receptors contribute to the control
    of network activity and information processing in hippocampal circuits by regulating
    neuronal excitability and synaptic transmission. The dysfunction in the dentate
    gyrus (DG) has been implicated in Alzheimer´s disease (AD). Given the involvement
    of GABAB receptors in AD, to determine their subcellular localisation and possible
    alteration in granule cells of the DG in a mouse model of AD at 12 months of age,
    we used high-resolution immunoelectron microscopic analysis. Immunohistochemistry
    at the light microscopic level showed that the regional and cellular expression
    pattern of GABAB1 was similar in an AD model mouse expressing mutated human amyloid
    precursor protein and presenilin1 (APP/PS1) and in age-matched wild type mice.
    High-resolution immunoelectron microscopy revealed a distance-dependent gradient
    of immunolabelling for GABAB receptors, increasing from proximal to distal dendrites
    in both wild type and APP/PS1 mice. However, the overall density of GABAB receptors
    at the neuronal surface of these postsynaptic compartments of granule cells was
    significantly reduced in APP/PS1 mice. Parallel to this reduction in surface receptors,
    we found a significant increase in GABAB1 at cytoplasmic sites. GABAB receptors
    were also detected at presynaptic sites in the molecular layer of the DG. We also
    found a decrease in plasma membrane GABAB receptors in axon terminals contacting
    dendritic spines of granule cells, which was more pronounced in the outer than
    in the inner molecular layer. Altogether, our data showing post- and presynaptic
    reduction in surface GABAB receptors in the DG suggest the alteration of the GABAB-mediated
    modulation of excitability and synaptic transmission in granule cells, which may
    contribute to the cognitive dysfunctions in the APP/PS1 model of AD
article_number: '2459'
article_processing_charge: No
article_type: original
author:
- first_name: Alejandro
  full_name: Martín-Belmonte, Alejandro
  last_name: Martín-Belmonte
- first_name: Carolina
  full_name: Aguado, Carolina
  last_name: Aguado
- first_name: Rocío
  full_name: Alfaro-Ruíz, Rocío
  last_name: Alfaro-Ruíz
- first_name: Ana Esther
  full_name: Moreno-Martínez, Ana Esther
  last_name: Moreno-Martínez
- first_name: Luis
  full_name: De La Ossa, Luis
  last_name: De La Ossa
- first_name: José
  full_name: Martínez-Hernández, José
  last_name: Martínez-Hernández
- first_name: Alain
  full_name: Buisson, Alain
  last_name: Buisson
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Rafael
  full_name: Luján, Rafael
  last_name: Luján
citation:
  ama: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, et al. Density of GABAB receptors
    is reduced in granule cells of the hippocampus in a mouse model of Alzheimer’s
    disease. <i>International journal of molecular sciences</i>. 2020;21(7). doi:<a
    href="https://doi.org/10.3390/ijms21072459">10.3390/ijms21072459</a>
  apa: Martín-Belmonte, A., Aguado, C., Alfaro-Ruíz, R., Moreno-Martínez, A. E., De
    La Ossa, L., Martínez-Hernández, J., … Luján, R. (2020). Density of GABAB receptors
    is reduced in granule cells of the hippocampus in a mouse model of Alzheimer’s
    disease. <i>International Journal of Molecular Sciences</i>. MDPI. <a href="https://doi.org/10.3390/ijms21072459">https://doi.org/10.3390/ijms21072459</a>
  chicago: Martín-Belmonte, Alejandro, Carolina Aguado, Rocío Alfaro-Ruíz, Ana Esther
    Moreno-Martínez, Luis De La Ossa, José Martínez-Hernández, Alain Buisson, Ryuichi
    Shigemoto, Yugo Fukazawa, and Rafael Luján. “Density of GABAB Receptors Is Reduced
    in Granule Cells of the Hippocampus in a Mouse Model of Alzheimer’s Disease.”
    <i>International Journal of Molecular Sciences</i>. MDPI, 2020. <a href="https://doi.org/10.3390/ijms21072459">https://doi.org/10.3390/ijms21072459</a>.
  ieee: A. Martín-Belmonte <i>et al.</i>, “Density of GABAB receptors is reduced in
    granule cells of the hippocampus in a mouse model of Alzheimer’s disease,” <i>International
    journal of molecular sciences</i>, vol. 21, no. 7. MDPI, 2020.
  ista: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, Moreno-Martínez AE, De La Ossa
    L, Martínez-Hernández J, Buisson A, Shigemoto R, Fukazawa Y, Luján R. 2020. Density
    of GABAB receptors is reduced in granule cells of the hippocampus in a mouse model
    of Alzheimer’s disease. International journal of molecular sciences. 21(7), 2459.
  mla: Martín-Belmonte, Alejandro, et al. “Density of GABAB Receptors Is Reduced in
    Granule Cells of the Hippocampus in a Mouse Model of Alzheimer’s Disease.” <i>International
    Journal of Molecular Sciences</i>, vol. 21, no. 7, 2459, MDPI, 2020, doi:<a href="https://doi.org/10.3390/ijms21072459">10.3390/ijms21072459</a>.
  short: A. Martín-Belmonte, C. Aguado, R. Alfaro-Ruíz, A.E. Moreno-Martínez, L. De
    La Ossa, J. Martínez-Hernández, A. Buisson, R. Shigemoto, Y. Fukazawa, R. Luján,
    International Journal of Molecular Sciences 21 (2020).
date_created: 2020-04-19T22:00:55Z
date_published: 2020-04-02T00:00:00Z
date_updated: 2023-08-21T06:13:19Z
day: '02'
ddc:
- '570'
department:
- _id: RySh
doi: 10.3390/ijms21072459
external_id:
  isi:
  - '000535574200201'
  pmid:
  - '32252271'
file:
- access_level: open_access
  checksum: b9d2f1657d8c4a74b01a62b474d009b0
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-20T11:43:18Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7669'
  file_name: 2020_JournMolecSciences_Martin_Belmonte.pdf
  file_size: 2941197
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        21'
isi: 1
issue: '7'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: International journal of molecular sciences
publication_identifier:
  eissn:
  - '14220067'
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Density of GABAB receptors is reduced in granule cells of the hippocampus in
  a mouse model of Alzheimer's disease
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 21
year: '2020'
...
