---
_id: '13212'
abstract:
- lang: eng
  text: Auxin is the major plant hormone regulating growth and development (Friml,
    2022). Forward genetic approaches in the model plant Arabidopsis thaliana have
    identified major components of auxin signalling and established the canonical
    mechanism mediating transcriptional and thus developmental reprogramming. In this
    textbook view, TRANSPORT INHIBITOR RESPONSE 1 (TIR1)/AUXIN-SIGNALING F-BOX (AFBs)
    are auxin receptors, which act as F-box subunits determining the substrate specificity
    of the Skp1-Cullin1-F box protein (SCF) type E3 ubiquitin ligase complex. Auxin
    acts as a “molecular glue” increasing the affinity between TIR1/AFBs and the Aux/IAA
    repressors. Subsequently, Aux/IAAs are ubiquitinated and degraded, thus releasing
    auxin transcription factors from their repression making them free to mediate
    transcription of auxin response genes (Yu et al., 2022). Nonetheless, accumulating
    evidence suggests existence of rapid, non-transcriptional responses downstream
    of TIR1/AFBs such as auxin-induced cytosolic calcium (Ca2+) transients, plasma
    membrane depolarization and apoplast alkalinisation, all converging on the process
    of root growth inhibition and root gravitropism (Li et al., 2022). Particularly,
    these rapid responses are mostly contributed by predominantly cytosolic AFB1,
    while the long-term growth responses are mediated by mainly nuclear TIR1 and AFB2-AFB5
    (Li et al., 2021; Prigge et al., 2020; Serre et al., 2021). How AFB1 conducts
    auxin-triggered rapid responses and how it is different from TIR1 and AFB2-AFB5
    remains elusive. Here, we compare the roles of TIR1 and AFB1 in transcriptional
    and rapid responses by modulating their subcellular localization in Arabidopsis
    and by testing their ability to mediate transcriptional responses when part of
    the minimal auxin circuit reconstituted in yeast.
acknowledged_ssus:
- _id: LifeSc
- _id: Bio
acknowledgement: We thank all the authors for sharing the published materials. This
  research was supported by the Lab Support Facility and the Imaging and Optics Facility
  of ISTA. We thank Lukáš Fiedler (ISTA) for critical reading of the manuscript. This
  project was funded by the European Research Council Advanced Grant (ETAP-742985).
article_processing_charge: Yes (via OA deal)
article_type: letter_note
author:
- first_name: Huihuang
  full_name: Chen, Huihuang
  id: 83c96512-15b2-11ec-abd3-b7eede36184f
  last_name: Chen
- first_name: Lanxin
  full_name: Li, Lanxin
  id: 367EF8FA-F248-11E8-B48F-1D18A9856A87
  last_name: Li
  orcid: 0000-0002-5607-272X
- first_name: Minxia
  full_name: Zou, Minxia
  id: 5c243f41-03f3-11ec-841c-96faf48a7ef9
  last_name: Zou
- first_name: Linlin
  full_name: Qi, Linlin
  id: 44B04502-A9ED-11E9-B6FC-583AE6697425
  last_name: Qi
  orcid: 0000-0001-5187-8401
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Chen H, Li L, Zou M, Qi L, Friml J. Distinct functions of TIR1 and AFB1 receptors
    in auxin signalling. <i>Molecular Plant</i>. 2023;16(7):1117-1119. doi:<a href="https://doi.org/10.1016/j.molp.2023.06.007">10.1016/j.molp.2023.06.007</a>
  apa: Chen, H., Li, L., Zou, M., Qi, L., &#38; Friml, J. (2023). Distinct functions
    of TIR1 and AFB1 receptors in auxin signalling. <i>Molecular Plant</i>. Elsevier
    . <a href="https://doi.org/10.1016/j.molp.2023.06.007">https://doi.org/10.1016/j.molp.2023.06.007</a>
  chicago: Chen, Huihuang, Lanxin Li, Minxia Zou, Linlin Qi, and Jiří Friml. “Distinct
    Functions of TIR1 and AFB1 Receptors in Auxin Signalling.” <i>Molecular Plant</i>.
    Elsevier , 2023. <a href="https://doi.org/10.1016/j.molp.2023.06.007">https://doi.org/10.1016/j.molp.2023.06.007</a>.
  ieee: H. Chen, L. Li, M. Zou, L. Qi, and J. Friml, “Distinct functions of TIR1 and
    AFB1 receptors in auxin signalling.,” <i>Molecular Plant</i>, vol. 16, no. 7.
    Elsevier , pp. 1117–1119, 2023.
  ista: Chen H, Li L, Zou M, Qi L, Friml J. 2023. Distinct functions of TIR1 and AFB1
    receptors in auxin signalling. Molecular Plant. 16(7), 1117–1119.
  mla: Chen, Huihuang, et al. “Distinct Functions of TIR1 and AFB1 Receptors in Auxin
    Signalling.” <i>Molecular Plant</i>, vol. 16, no. 7, Elsevier , 2023, pp. 1117–19,
    doi:<a href="https://doi.org/10.1016/j.molp.2023.06.007">10.1016/j.molp.2023.06.007</a>.
  short: H. Chen, L. Li, M. Zou, L. Qi, J. Friml, Molecular Plant 16 (2023) 1117–1119.
date_created: 2023-07-12T07:32:46Z
date_published: 2023-07-01T00:00:00Z
date_updated: 2024-01-29T10:38:57Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1016/j.molp.2023.06.007
ec_funded: 1
external_id:
  isi:
  - '001044410900001'
  pmid:
  - '37393433'
file:
- access_level: open_access
  checksum: 6012b7e4a2f680ee6c1f84001e2b945f
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intvolume: '        16'
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language:
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license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '07'
oa: 1
oa_version: Published Version
page: 1117-1119
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
publication: Molecular Plant
publication_identifier:
  eissn:
  - 1674-2052
  issn:
  - 1752-9867
publication_status: published
publisher: 'Elsevier '
quality_controlled: '1'
scopus_import: '1'
status: public
title: Distinct functions of TIR1 and AFB1 receptors in auxin signalling.
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2023'
...
---
_id: '13266'
abstract:
- lang: eng
  text: The 3′,5′-cyclic adenosine monophosphate (cAMP) is a versatile second messenger
    in many mammalian signaling pathways. However, its role in plants remains not
    well-recognized. Recent discovery of adenylate cyclase (AC) activity for transport
    inhibitor response 1/auxin-signaling F-box proteins (TIR1/AFB) auxin receptors
    and the demonstration of its importance for canonical auxin signaling put plant
    cAMP research back into spotlight. This insight briefly summarizes the well-established
    cAMP signaling pathways in mammalian cells and describes the turbulent and controversial
    history of plant cAMP research highlighting the major progress and the unresolved
    points. We also briefly review the current paradigm of auxin signaling to provide
    a background for the discussion on the AC activity of TIR1/AFB auxin receptors
    and its potential role in transcriptional auxin signaling as well as impact of
    these discoveries on plant cAMP research in general.
acknowledgement: 'We gratefully acknowledge our brave colleagues, whose excellent
  efforts kept the plant cAMP research going in the last two decades. The authors
  were financially supported by the Austrian Science Fund (FWF): I 6123 and P 37051-B.'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Linlin
  full_name: Qi, Linlin
  id: 44B04502-A9ED-11E9-B6FC-583AE6697425
  last_name: Qi
  orcid: 0000-0001-5187-8401
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Qi L, Friml J. Tale of cAMP as a second messenger in auxin signaling and beyond.
    <i>New Phytologist</i>. 2023;240(2):489-495. doi:<a href="https://doi.org/10.1111/nph.19123">10.1111/nph.19123</a>
  apa: Qi, L., &#38; Friml, J. (2023). Tale of cAMP as a second messenger in auxin
    signaling and beyond. <i>New Phytologist</i>. Wiley. <a href="https://doi.org/10.1111/nph.19123">https://doi.org/10.1111/nph.19123</a>
  chicago: Qi, Linlin, and Jiří Friml. “Tale of CAMP as a Second Messenger in Auxin
    Signaling and Beyond.” <i>New Phytologist</i>. Wiley, 2023. <a href="https://doi.org/10.1111/nph.19123">https://doi.org/10.1111/nph.19123</a>.
  ieee: L. Qi and J. Friml, “Tale of cAMP as a second messenger in auxin signaling
    and beyond,” <i>New Phytologist</i>, vol. 240, no. 2. Wiley, pp. 489–495, 2023.
  ista: Qi L, Friml J. 2023. Tale of cAMP as a second messenger in auxin signaling
    and beyond. New Phytologist. 240(2), 489–495.
  mla: Qi, Linlin, and Jiří Friml. “Tale of CAMP as a Second Messenger in Auxin Signaling
    and Beyond.” <i>New Phytologist</i>, vol. 240, no. 2, Wiley, 2023, pp. 489–95,
    doi:<a href="https://doi.org/10.1111/nph.19123">10.1111/nph.19123</a>.
  short: L. Qi, J. Friml, New Phytologist 240 (2023) 489–495.
date_created: 2023-07-23T22:01:13Z
date_published: 2023-10-01T00:00:00Z
date_updated: 2024-01-29T11:21:55Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/nph.19123
external_id:
  isi:
  - '001026321500001'
  pmid:
  - '37434303'
file:
- access_level: open_access
  checksum: 6d9bbd45b8e7bb3ceee2586d447bacb2
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-29T11:21:43Z
  date_updated: 2024-01-29T11:21:43Z
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has_accepted_license: '1'
intvolume: '       240'
isi: 1
issue: '2'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 489-495
pmid: 1
project:
- _id: bd76d395-d553-11ed-ba76-f678c14f9033
  grant_number: I06123
  name: Peptide receptor complexes for auxin canalization and regeneration in Arabidopsis
- _id: 7bcece63-9f16-11ee-852c-ae94e099eeb6
  grant_number: P37051
  name: Guanylate cyclase activity of TIR1/AFBs auxin receptors
publication: New Phytologist
publication_identifier:
  eissn:
  - 1469-8137
  issn:
  - 0028-646X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tale of cAMP as a second messenger in auxin signaling and beyond
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 240
year: '2023'
...
---
_id: '12144'
abstract:
- lang: eng
  text: The phytohormone auxin is the major coordinative signal in plant development1,
    mediating transcriptional reprogramming by a well-established canonical signalling
    pathway. TRANSPORT INHIBITOR RESPONSE 1 (TIR1)/AUXIN-SIGNALING F-BOX (AFB) auxin
    receptors are F-box subunits of ubiquitin ligase complexes. In response to auxin,
    they associate with Aux/IAA transcriptional repressors and target them for degradation
    via ubiquitination2,3. Here we identify adenylate cyclase (AC) activity as an
    additional function of TIR1/AFB receptors across land plants. Auxin, together
    with Aux/IAAs, stimulates cAMP production. Three separate mutations in the AC
    motif of the TIR1 C-terminal region, all of which abolish the AC activity, each
    render TIR1 ineffective in mediating gravitropism and sustained auxin-induced
    root growth inhibition, and also affect auxin-induced transcriptional regulation.
    These results highlight the importance of TIR1/AFB AC activity in canonical auxin
    signalling. They also identify a unique phytohormone receptor cassette combining
    F-box and AC motifs, and the role of cAMP as a second messenger in plants.
acknowledged_ssus:
- _id: LifeSc
- _id: Bio
acknowledgement: This research was supported by the Lab Support Facility (LSF) and
  the Imaging and Optics Facility (IOF) of IST Austria. We thank C. Gehring for suggestions
  and advice; and K. U. Torii and G. Stacey for seeds and plasmids. This project was
  funded by a European Research Council Advanced Grant (ETAP-742985). M.F.K. and R.N.
  acknowledge the support of the EU MSCA-IF project CrysPINs (792329). M.K. was supported
  by the project POWR.03.05.00-00-Z302/17 Universitas Copernicana Thoruniensis in
  Futuro–IDS “Academia Copernicana”. CIDG acknowledges support from UKRI under Future
  Leaders Fellowship grant number MR/T020652/1.
article_processing_charge: No
article_type: original
author:
- first_name: Linlin
  full_name: Qi, Linlin
  id: 44B04502-A9ED-11E9-B6FC-583AE6697425
  last_name: Qi
  orcid: 0000-0001-5187-8401
- first_name: Mateusz
  full_name: Kwiatkowski, Mateusz
  last_name: Kwiatkowski
- first_name: Huihuang
  full_name: Chen, Huihuang
  id: 83c96512-15b2-11ec-abd3-b7eede36184f
  last_name: Chen
- first_name: Lukas
  full_name: Hörmayer, Lukas
  id: 2EEE7A2A-F248-11E8-B48F-1D18A9856A87
  last_name: Hörmayer
  orcid: 0000-0001-8295-2926
- first_name: Scott A
  full_name: Sinclair, Scott A
  id: 2D99FE6A-F248-11E8-B48F-1D18A9856A87
  last_name: Sinclair
  orcid: 0000-0002-4566-0593
- first_name: Minxia
  full_name: Zou, Minxia
  id: 5c243f41-03f3-11ec-841c-96faf48a7ef9
  last_name: Zou
- first_name: Charo I.
  full_name: del Genio, Charo I.
  last_name: del Genio
- first_name: Martin F.
  full_name: Kubeš, Martin F.
  last_name: Kubeš
- first_name: Richard
  full_name: Napier, Richard
  last_name: Napier
- first_name: Krzysztof
  full_name: Jaworski, Krzysztof
  last_name: Jaworski
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Qi L, Kwiatkowski M, Chen H, et al. Adenylate cyclase activity of TIR1/AFB
    auxin receptors in plants. <i>Nature</i>. 2022;611(7934):133-138. doi:<a href="https://doi.org/10.1038/s41586-022-05369-7">10.1038/s41586-022-05369-7</a>
  apa: Qi, L., Kwiatkowski, M., Chen, H., Hörmayer, L., Sinclair, S. A., Zou, M.,
    … Friml, J. (2022). Adenylate cyclase activity of TIR1/AFB auxin receptors in
    plants. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-022-05369-7">https://doi.org/10.1038/s41586-022-05369-7</a>
  chicago: Qi, Linlin, Mateusz Kwiatkowski, Huihuang Chen, Lukas Hörmayer, Scott A
    Sinclair, Minxia Zou, Charo I. del Genio, et al. “Adenylate Cyclase Activity of
    TIR1/AFB Auxin Receptors in Plants.” <i>Nature</i>. Springer Nature, 2022. <a
    href="https://doi.org/10.1038/s41586-022-05369-7">https://doi.org/10.1038/s41586-022-05369-7</a>.
  ieee: L. Qi <i>et al.</i>, “Adenylate cyclase activity of TIR1/AFB auxin receptors
    in plants,” <i>Nature</i>, vol. 611, no. 7934. Springer Nature, pp. 133–138, 2022.
  ista: Qi L, Kwiatkowski M, Chen H, Hörmayer L, Sinclair SA, Zou M, del Genio CI,
    Kubeš MF, Napier R, Jaworski K, Friml J. 2022. Adenylate cyclase activity of TIR1/AFB
    auxin receptors in plants. Nature. 611(7934), 133–138.
  mla: Qi, Linlin, et al. “Adenylate Cyclase Activity of TIR1/AFB Auxin Receptors
    in Plants.” <i>Nature</i>, vol. 611, no. 7934, Springer Nature, 2022, pp. 133–38,
    doi:<a href="https://doi.org/10.1038/s41586-022-05369-7">10.1038/s41586-022-05369-7</a>.
  short: L. Qi, M. Kwiatkowski, H. Chen, L. Hörmayer, S.A. Sinclair, M. Zou, C.I.
    del Genio, M.F. Kubeš, R. Napier, K. Jaworski, J. Friml, Nature 611 (2022) 133–138.
date_created: 2023-01-12T12:06:05Z
date_published: 2022-11-03T00:00:00Z
date_updated: 2023-10-03T11:04:53Z
day: '03'
department:
- _id: JiFr
doi: 10.1038/s41586-022-05369-7
ec_funded: 1
external_id:
  isi:
  - '000875061600013'
  pmid:
  - '36289340'
intvolume: '       611'
isi: 1
issue: '7934'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://wrap.warwick.ac.uk/168325/1/WRAP-denylate-cyclase-activity-TIR1-AFB-auxin-receptors-root-growth-22.pdf
month: '11'
oa: 1
oa_version: Submitted Version
page: 133-138
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Adenylate cyclase activity of TIR1/AFB auxin receptors in plants
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 611
year: '2022'
...
---
_id: '9656'
abstract:
- lang: eng
  text: Tropisms, growth responses to environmental stimuli such as light or gravity,
    are spectacular examples of adaptive plant development. The plant hormone auxin
    serves as a major coordinative signal. The PIN auxin exporters, through their
    dynamic polar subcellular localizations, redirect auxin fluxes in response to
    environmental stimuli and the resulting auxin gradients across organs underly
    differential cell elongation and bending. In this review, we discuss recent advances
    concerning regulations of PIN polarity during tropisms, focusing on PIN phosphorylation
    and trafficking. We also cover how environmental cues regulate PIN actions during
    tropisms, and a crucial role of auxin feedback on PIN polarity during bending
    termination. Finally, the interactions between different tropisms are reviewed
    to understand plant adaptive growth in the natural environment.
acknowledgement: We are grateful to Lukas Fiedler, Alexandra Mally (IST Austria) and
  Dr. Bartel Vanholme (VIB, Ghent) for their critical comments on the manuscript.
  We apologize to those researchers whose great work was not cited. This work is supported
  by the European Research Council under the European Union’s Horizon 2020 research
  and innovation Programme (ERC grant agreement number 742985), and the Austrian Science
  Fund (FWF, grant number I 3630-B25) to JF. HH is supported by the China Scholarship
  Council (CSC scholarship, 201506870018) and a starting grant from Jiangxi Agriculture
  University (9232308314).
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Huibin
  full_name: Han, Huibin
  id: 31435098-F248-11E8-B48F-1D18A9856A87
  last_name: Han
- first_name: Maciek
  full_name: Adamowski, Maciek
  id: 45F536D2-F248-11E8-B48F-1D18A9856A87
  last_name: Adamowski
  orcid: 0000-0001-6463-5257
- first_name: Linlin
  full_name: Qi, Linlin
  id: 44B04502-A9ED-11E9-B6FC-583AE6697425
  last_name: Qi
  orcid: 0000-0001-5187-8401
- first_name: SS
  full_name: Alotaibi, SS
  last_name: Alotaibi
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Han H, Adamowski M, Qi L, Alotaibi S, Friml J. PIN-mediated polar auxin transport
    regulations in plant tropic responses. <i>New Phytologist</i>. 2021;232(2):510-522.
    doi:<a href="https://doi.org/10.1111/nph.17617">10.1111/nph.17617</a>
  apa: Han, H., Adamowski, M., Qi, L., Alotaibi, S., &#38; Friml, J. (2021). PIN-mediated
    polar auxin transport regulations in plant tropic responses. <i>New Phytologist</i>.
    Wiley. <a href="https://doi.org/10.1111/nph.17617">https://doi.org/10.1111/nph.17617</a>
  chicago: Han, Huibin, Maciek Adamowski, Linlin Qi, SS Alotaibi, and Jiří Friml.
    “PIN-Mediated Polar Auxin Transport Regulations in Plant Tropic Responses.” <i>New
    Phytologist</i>. Wiley, 2021. <a href="https://doi.org/10.1111/nph.17617">https://doi.org/10.1111/nph.17617</a>.
  ieee: H. Han, M. Adamowski, L. Qi, S. Alotaibi, and J. Friml, “PIN-mediated polar
    auxin transport regulations in plant tropic responses,” <i>New Phytologist</i>,
    vol. 232, no. 2. Wiley, pp. 510–522, 2021.
  ista: Han H, Adamowski M, Qi L, Alotaibi S, Friml J. 2021. PIN-mediated polar auxin
    transport regulations in plant tropic responses. New Phytologist. 232(2), 510–522.
  mla: Han, Huibin, et al. “PIN-Mediated Polar Auxin Transport Regulations in Plant
    Tropic Responses.” <i>New Phytologist</i>, vol. 232, no. 2, Wiley, 2021, pp. 510–22,
    doi:<a href="https://doi.org/10.1111/nph.17617">10.1111/nph.17617</a>.
  short: H. Han, M. Adamowski, L. Qi, S. Alotaibi, J. Friml, New Phytologist 232 (2021)
    510–522.
date_created: 2021-07-14T15:29:14Z
date_published: 2021-10-01T00:00:00Z
date_updated: 2023-08-10T14:02:41Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/nph.17617
ec_funded: 1
external_id:
  isi:
  - '000680587100001'
  pmid:
  - '34254313'
file:
- access_level: open_access
  checksum: 6422a6eb329b52d96279daaee0fcf189
  content_type: application/pdf
  creator: kschuh
  date_created: 2021-10-07T13:42:47Z
  date_updated: 2021-10-07T13:42:47Z
  file_id: '10105'
  file_name: 2021_NewPhytologist_Han.pdf
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  name: Tracing Evolution of Auxin Transport and Polarity in Plants
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  name: Molecular mechanisms of endocytic cargo recognition in plants
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title: PIN-mediated polar auxin transport regulations in plant tropic responses
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