---
_id: '14339'
abstract:
- lang: eng
  text: Lateral roots are typically maintained at non-vertical angles with respect
    to gravity. These gravitropic setpoint angles are intriguing because their maintenance
    requires that roots are able to effect growth response both with and against the
    gravity vector, a phenomenon previously attributed to gravitropism acting against
    an antigravitropic offset mechanism. Here we show how the components mediating
    gravitropism in the vertical primary root—PINs and phosphatases acting upon them—are
    reconfigured in their regulation such that lateral root growth at a range of angles
    can be maintained. We show that the ability of Arabidopsis lateral roots to bend
    both downward and upward requires the generation of auxin asymmetries and is driven
    by angle-dependent variation in downward gravitropic auxin flux acting against
    angle-independent upward, antigravitropic flux. Further, we demonstrate a symmetry
    in auxin distribution in lateral roots at gravitropic setpoint angle that can
    be traced back to a net, balanced polarization of PIN3 and PIN7 auxin transporters
    in the columella. These auxin fluxes are shifted by altering PIN protein phosphoregulation
    in the columella, either by introducing PIN3 phosphovariant versions or via manipulation
    of levels of the phosphatase subunit PP2A/RCN1. Finally, we show that auxin, in
    addition to driving lateral root directional growth, acts within the lateral root
    columella to induce more vertical growth by increasing RCN1 levels, causing a
    downward shift in PIN3 localization, thereby diminishing the magnitude of the
    upward, antigravitropic auxin flux.
acknowledgement: We thank D. Weijers, C. Schwechheimer and R. Offringa for generous
  sharing of published and unpublished materials and P. Masson for advice on the use
  of the ARL2 promoter. We are grateful to M. Del Bianco and O. Leyser for critical
  reading of the manuscript. This work was supported by the BBSRC (grants BB/N010124/1
  and BB/R000859/1 to S.K.), the Gatsby Charitable Foundation and the Leverhulme Trust
  (RPG-2018-137 to S.K.).
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: S
  full_name: Roychoudhry, S
  last_name: Roychoudhry
- first_name: K
  full_name: Sageman-Furnas, K
  last_name: Sageman-Furnas
- first_name: C
  full_name: Wolverton, C
  last_name: Wolverton
- first_name: Peter
  full_name: Grones, Peter
  id: 399876EC-F248-11E8-B48F-1D18A9856A87
  last_name: Grones
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Gergely
  full_name: Molnar, Gergely
  id: 34F1AF46-F248-11E8-B48F-1D18A9856A87
  last_name: Molnar
- first_name: M
  full_name: De Angelis, M
  last_name: De Angelis
- first_name: HL
  full_name: Goodman, HL
  last_name: Goodman
- first_name: N
  full_name: Capstaff, N
  last_name: Capstaff
- first_name: Lloyd
  full_name: JPB, Lloyd
  last_name: JPB
- first_name: J
  full_name: Mullen, J
  last_name: Mullen
- first_name: R
  full_name: Hangarter, R
  last_name: Hangarter
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: S
  full_name: Kepinski, S
  last_name: Kepinski
citation:
  ama: Roychoudhry S, Sageman-Furnas K, Wolverton C, et al. Antigravitropic PIN polarization
    maintains non-vertical growth in lateral roots. <i>Nature Plants</i>. 2023;9:1500-1513.
    doi:<a href="https://doi.org/10.1038/s41477-023-01478-x">10.1038/s41477-023-01478-x</a>
  apa: Roychoudhry, S., Sageman-Furnas, K., Wolverton, C., Grones, P., Tan, S., Molnar,
    G., … Kepinski, S. (2023). Antigravitropic PIN polarization maintains non-vertical
    growth in lateral roots. <i>Nature Plants</i>. Springer Nature. <a href="https://doi.org/10.1038/s41477-023-01478-x">https://doi.org/10.1038/s41477-023-01478-x</a>
  chicago: Roychoudhry, S, K Sageman-Furnas, C Wolverton, Peter Grones, Shutang Tan,
    Gergely Molnar, M De Angelis, et al. “Antigravitropic PIN Polarization Maintains
    Non-Vertical Growth in Lateral Roots.” <i>Nature Plants</i>. Springer Nature,
    2023. <a href="https://doi.org/10.1038/s41477-023-01478-x">https://doi.org/10.1038/s41477-023-01478-x</a>.
  ieee: S. Roychoudhry <i>et al.</i>, “Antigravitropic PIN polarization maintains
    non-vertical growth in lateral roots,” <i>Nature Plants</i>, vol. 9. Springer
    Nature, pp. 1500–1513, 2023.
  ista: Roychoudhry S, Sageman-Furnas K, Wolverton C, Grones P, Tan S, Molnar G, De
    Angelis M, Goodman H, Capstaff N, JPB L, Mullen J, Hangarter R, Friml J, Kepinski
    S. 2023. Antigravitropic PIN polarization maintains non-vertical growth in lateral
    roots. Nature Plants. 9, 1500–1513.
  mla: Roychoudhry, S., et al. “Antigravitropic PIN Polarization Maintains Non-Vertical
    Growth in Lateral Roots.” <i>Nature Plants</i>, vol. 9, Springer Nature, 2023,
    pp. 1500–13, doi:<a href="https://doi.org/10.1038/s41477-023-01478-x">10.1038/s41477-023-01478-x</a>.
  short: S. Roychoudhry, K. Sageman-Furnas, C. Wolverton, P. Grones, S. Tan, G. Molnar,
    M. De Angelis, H. Goodman, N. Capstaff, L. JPB, J. Mullen, R. Hangarter, J. Friml,
    S. Kepinski, Nature Plants 9 (2023) 1500–1513.
date_created: 2023-09-15T09:56:01Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2023-12-13T12:23:49Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1038/s41477-023-01478-x
external_id:
  isi:
  - '001069238800014'
  pmid:
  - '37666965'
file:
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  date_updated: 2023-09-20T10:51:31Z
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intvolume: '         9'
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language:
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license: https://creativecommons.org/licenses/by/4.0/
month: '09'
oa: 1
oa_version: Published Version
page: 1500-1513
pmid: 1
publication: Nature Plants
publication_identifier:
  issn:
  - 2055-0278
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Antigravitropic PIN polarization maintains non-vertical growth in lateral roots
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2023'
...
---
_id: '10768'
abstract:
- lang: eng
  text: Among the most fascinated properties of the plant hormone auxin is its ability
    to promote formation of its own directional transport routes. These gradually
    narrowing auxin channels form from the auxin source toward the sink and involve
    coordinated, collective polarization of individual cells. Once established, the
    channels provide positional information, along which new vascular strands form,
    for example, during organogenesis, regeneration, or leave venation. The main prerequisite
    of this still mysterious auxin canalization mechanism is a feedback between auxin
    signaling and its directional transport. This is manifested by auxin-induced re-arrangements
    of polar, subcellular localization of PIN-FORMED (PIN) auxin exporters. Immanent
    open questions relate to how position of auxin source and sink as well as tissue
    context are sensed and translated into tissue polarization and how cells communicate
    to polarize coordinately. Recently, identification of the first molecular players
    opens new avenues into molecular studies of this intriguing example of self-organizing
    plant development.
acknowledgement: The authors apologize to those researchers whose work was not cited.
  In addition, exciting topics such as PIN polarization in context of phyllotaxis,
  shoot branching and termination of gravitropic bending, or role of additional auxin
  transporters could not have been included owing to lack of space. This work was
  supported by the Czech Science Foundation GAČR (GA18-26981S). The authors also acknowledge
  the EMBO for supporting J.H. with a long-term fellowship (ALTF217-2021).
article_number: '102174'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Jakub
  full_name: Hajny, Jakub
  id: 4800CC20-F248-11E8-B48F-1D18A9856A87
  last_name: Hajny
  orcid: 0000-0003-2140-7195
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: 'Hajny J, Tan S, Friml J. Auxin canalization: From speculative models toward
    molecular players. <i>Current Opinion in Plant Biology</i>. 2022;65(2). doi:<a
    href="https://doi.org/10.1016/j.pbi.2022.102174">10.1016/j.pbi.2022.102174</a>'
  apa: 'Hajny, J., Tan, S., &#38; Friml, J. (2022). Auxin canalization: From speculative
    models toward molecular players. <i>Current Opinion in Plant Biology</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.pbi.2022.102174">https://doi.org/10.1016/j.pbi.2022.102174</a>'
  chicago: 'Hajny, Jakub, Shutang Tan, and Jiří Friml. “Auxin Canalization: From Speculative
    Models toward Molecular Players.” <i>Current Opinion in Plant Biology</i>. Elsevier,
    2022. <a href="https://doi.org/10.1016/j.pbi.2022.102174">https://doi.org/10.1016/j.pbi.2022.102174</a>.'
  ieee: 'J. Hajny, S. Tan, and J. Friml, “Auxin canalization: From speculative models
    toward molecular players,” <i>Current Opinion in Plant Biology</i>, vol. 65, no.
    2. Elsevier, 2022.'
  ista: 'Hajny J, Tan S, Friml J. 2022. Auxin canalization: From speculative models
    toward molecular players. Current Opinion in Plant Biology. 65(2), 102174.'
  mla: 'Hajny, Jakub, et al. “Auxin Canalization: From Speculative Models toward Molecular
    Players.” <i>Current Opinion in Plant Biology</i>, vol. 65, no. 2, 102174, Elsevier,
    2022, doi:<a href="https://doi.org/10.1016/j.pbi.2022.102174">10.1016/j.pbi.2022.102174</a>.'
  short: J. Hajny, S. Tan, J. Friml, Current Opinion in Plant Biology 65 (2022).
date_created: 2022-02-20T23:01:32Z
date_published: 2022-02-01T00:00:00Z
date_updated: 2023-08-02T14:29:12Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1016/j.pbi.2022.102174
external_id:
  isi:
  - '000758724700004'
  pmid:
  - '35123880'
file:
- access_level: open_access
  checksum: f1ee02b6fb4200934eeb31fa69120885
  content_type: application/pdf
  creator: dernst
  date_created: 2022-03-10T13:34:09Z
  date_updated: 2022-03-10T13:34:09Z
  file_id: '10844'
  file_name: 2022_CurrentOpPlantBiology_Hajny.pdf
  file_size: 820322
  relation: main_file
  success: 1
file_date_updated: 2022-03-10T13:34:09Z
has_accepted_license: '1'
intvolume: '        65'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
publication: Current Opinion in Plant Biology
publication_identifier:
  issn:
  - 1369-5266
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Auxin canalization: From speculative models toward molecular players'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 65
year: '2022'
...
---
_id: '12052'
abstract:
- lang: eng
  text: Directionality in the intercellular transport of the plant hormone auxin is
    determined by polar plasma membrane localization of PIN-FORMED (PIN) auxin transport
    proteins. However, apart from PIN phosphorylation at conserved motifs, no further
    determinants explicitly controlling polar PIN sorting decisions have been identified.
    Here we present Arabidopsis WAVY GROWTH 3 (WAV3) and closely related RING-finger
    E3 ubiquitin ligases, whose loss-of-function mutants show a striking apical-to-basal
    polarity switch in PIN2 localization in root meristem cells. WAV3 E3 ligases function
    as essential determinants for PIN polarity, acting independently from PINOID/WAG-dependent
    PIN phosphorylation. They antagonize ectopic deposition of de novo synthesized
    PIN proteins already immediately following completion of cell division, presumably
    via preventing PIN sorting into basal, ARF GEF-mediated trafficking. Our findings
    reveal an involvement of E3 ligases in the selective targeting of apically localized
    PINs in higher plants.
acknowledgement: We would like to thank Tatsuo Sakai, Marcus Heisler, Toru Fujiwara,
  Lucia Strader, Christian Hardtke, Malcolm Bennett, Claus Schwechheimer, Gerd Jürgens
  and Remko Offringa for sharing published materials and Alba Grau Gimeno for support.
  We are greatly indebted to Bert de Rybel for supporting N.K. and M.G. to work on
  the final stages of manuscript preparation as postdocs in his laboratory. A full-length
  SOR1 cDNA clone (J090099M14) was obtained from the National Agriculture and Food
  Research Organization (NARO, Japan). Support by the Multiscale Imaging Core Facility
  at the BOKU is greatly acknowledged. This work has been supported by grants from
  the Austrian Science Fund (FWF P25931-B16; P31493-B25 to Christian Luschnig; I3630-B25
  to Jiří Friml; P30850-B32 to Barbara Korbei) and from the Swiss National Funds (31003A-165877/1
  to Markus Geisler) and the European Union’s Horizon 2020 research and innovation
  program (Marie Skłodowska-Curie grant agreement No 885979 to Matouš Glanc).
article_number: '5147'
article_processing_charge: No
article_type: original
author:
- first_name: N
  full_name: Konstantinova, N
  last_name: Konstantinova
- first_name: Lukas
  full_name: Hörmayer, Lukas
  id: 2EEE7A2A-F248-11E8-B48F-1D18A9856A87
  last_name: Hörmayer
- first_name: Matous
  full_name: Glanc, Matous
  id: 1AE1EA24-02D0-11E9-9BAA-DAF4881429F2
  last_name: Glanc
  orcid: 0000-0003-0619-7783
- first_name: R
  full_name: Keshkeih, R
  last_name: Keshkeih
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: M
  full_name: Di Donato, M
  last_name: Di Donato
- first_name: K
  full_name: Retzer, K
  last_name: Retzer
- first_name: J
  full_name: Moulinier-Anzola, J
  last_name: Moulinier-Anzola
- first_name: M
  full_name: Schwihla, M
  last_name: Schwihla
- first_name: B
  full_name: Korbei, B
  last_name: Korbei
- first_name: M
  full_name: Geisler, M
  last_name: Geisler
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: C
  full_name: Luschnig, C
  last_name: Luschnig
citation:
  ama: Konstantinova N, Hörmayer L, Glanc M, et al. WAVY GROWTH Arabidopsis E3 ubiquitin
    ligases affect apical PIN sorting decisions. <i>Nature Communications</i>. 2022;13.
    doi:<a href="https://doi.org/10.1038/s41467-022-32888-8">10.1038/s41467-022-32888-8</a>
  apa: Konstantinova, N., Hörmayer, L., Glanc, M., Keshkeih, R., Tan, S., Di Donato,
    M., … Luschnig, C. (2022). WAVY GROWTH Arabidopsis E3 ubiquitin ligases affect
    apical PIN sorting decisions. <i>Nature Communications</i>. Springer Nature. <a
    href="https://doi.org/10.1038/s41467-022-32888-8">https://doi.org/10.1038/s41467-022-32888-8</a>
  chicago: Konstantinova, N, Lukas Hörmayer, Matous Glanc, R Keshkeih, Shutang Tan,
    M Di Donato, K Retzer, et al. “WAVY GROWTH Arabidopsis E3 Ubiquitin Ligases Affect
    Apical PIN Sorting Decisions.” <i>Nature Communications</i>. Springer Nature,
    2022. <a href="https://doi.org/10.1038/s41467-022-32888-8">https://doi.org/10.1038/s41467-022-32888-8</a>.
  ieee: N. Konstantinova <i>et al.</i>, “WAVY GROWTH Arabidopsis E3 ubiquitin ligases
    affect apical PIN sorting decisions,” <i>Nature Communications</i>, vol. 13. Springer
    Nature, 2022.
  ista: Konstantinova N, Hörmayer L, Glanc M, Keshkeih R, Tan S, Di Donato M, Retzer
    K, Moulinier-Anzola J, Schwihla M, Korbei B, Geisler M, Friml J, Luschnig C. 2022.
    WAVY GROWTH Arabidopsis E3 ubiquitin ligases affect apical PIN sorting decisions.
    Nature Communications. 13, 5147.
  mla: Konstantinova, N., et al. “WAVY GROWTH Arabidopsis E3 Ubiquitin Ligases Affect
    Apical PIN Sorting Decisions.” <i>Nature Communications</i>, vol. 13, 5147, Springer
    Nature, 2022, doi:<a href="https://doi.org/10.1038/s41467-022-32888-8">10.1038/s41467-022-32888-8</a>.
  short: N. Konstantinova, L. Hörmayer, M. Glanc, R. Keshkeih, S. Tan, M. Di Donato,
    K. Retzer, J. Moulinier-Anzola, M. Schwihla, B. Korbei, M. Geisler, J. Friml,
    C. Luschnig, Nature Communications 13 (2022).
date_created: 2022-09-07T14:19:26Z
date_published: 2022-09-01T00:00:00Z
date_updated: 2023-08-03T13:40:32Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1038/s41467-022-32888-8
external_id:
  isi:
  - '000848744900004'
  pmid:
  - '36050482'
file:
- access_level: open_access
  checksum: 43336758c89cd6c045839089af070afe
  content_type: application/pdf
  creator: dernst
  date_created: 2022-09-08T07:46:16Z
  date_updated: 2022-09-08T07:46:16Z
  file_id: '12063'
  file_name: 2022_NatureCommunications_Konstantinova.pdf
  file_size: 6678579
  relation: main_file
  success: 1
file_date_updated: 2022-09-08T07:46:16Z
has_accepted_license: '1'
intvolume: '        13'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1038/s41467-022-33198-9
status: public
title: WAVY GROWTH Arabidopsis E3 ubiquitin ligases affect apical PIN sorting decisions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13
year: '2022'
...
---
_id: '12291'
abstract:
- lang: eng
  text: The phytohormone auxin triggers transcriptional reprogramming through a well-characterized
    perception machinery in the nucleus. By contrast, mechanisms that underlie fast
    effects of auxin, such as the regulation of ion fluxes, rapid phosphorylation
    of proteins or auxin feedback on its transport, remain unclear1,2,3. Whether auxin-binding
    protein 1 (ABP1) is an auxin receptor has been a source of debate for decades1,4.
    Here we show that a fraction of Arabidopsis thaliana ABP1 is secreted and binds
    auxin specifically at an acidic pH that is typical of the apoplast. ABP1 and its
    plasma-membrane-localized partner, transmembrane kinase 1 (TMK1), are required
    for the auxin-induced ultrafast global phospho-response and for downstream processes
    that include the activation of H+-ATPase and accelerated cytoplasmic streaming.
    abp1 and tmk mutants cannot establish auxin-transporting channels and show defective
    auxin-induced vasculature formation and regeneration. An ABP1(M2X) variant that
    lacks the capacity to bind auxin is unable to complement these defects in abp1
    mutants. These data indicate that ABP1 is the auxin receptor for TMK1-based cell-surface
    signalling, which mediates the global phospho-response and auxin canalization.
acknowledged_ssus:
- _id: Bio
- _id: EM-Fac
- _id: LifeSc
acknowledgement: We acknowledge K. Kubiasová for excellent technical assistance, J.
  Neuhold, A. Lehner and A. Sedivy for technical assistance with protein production
  and purification at Vienna Biocenter Core Facilities; Creoptix for performing GCI;
  and the Bioimaging, Electron Microscopy and Life Science Facilities at ISTA, the
  Plant Sciences Core Facility of CEITEC Masaryk University, the Core Facility CELLIM
  (MEYS CR, LM2018129 Czech-BioImaging) and J. Sprakel for their assistance. J.F.
  is grateful to R. Napier for many insightful suggestions and support. We thank all
  past and present members of the Friml group for their support and for other contributions
  to this effort to clarify the controversial role of ABP1 over the past seven years.
  The project received funding from the European Research Council (ERC) under the
  European Union’s Horizon 2020 research and innovation program (grant agreement no.
  742985 to J.F. and 833867 to D.W.); the Austrian Science Fund (FWF; P29988 to J.F.);
  the Netherlands Organization for Scientific Research (NWO; VICI grant 865.14.001
  to D.W. and VENI grant VI.Veni.212.003 to A.K.); the Ministry of Education, Science
  and Technological Development of the Republic of Serbia (contract no. 451-03-68/2022-14/200053
  to B.D.Ž.); and the MEXT/JSPS KAKENHI to K.T. (20K06685) and T.K. (20H05687 and
  20H05910).
article_processing_charge: No
article_type: original
author:
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Michelle C
  full_name: Gallei, Michelle C
  id: 35A03822-F248-11E8-B48F-1D18A9856A87
  last_name: Gallei
  orcid: 0000-0003-1286-7368
- first_name: Zuzana
  full_name: Gelová, Zuzana
  id: 0AE74790-0E0B-11E9-ABC7-1ACFE5697425
  last_name: Gelová
  orcid: 0000-0003-4783-1752
- first_name: Alexander J
  full_name: Johnson, Alexander J
  id: 46A62C3A-F248-11E8-B48F-1D18A9856A87
  last_name: Johnson
  orcid: 0000-0002-2739-8843
- first_name: Ewa
  full_name: Mazur, Ewa
  last_name: Mazur
- first_name: Aline
  full_name: Monzer, Aline
  id: 2DB5D88C-D7B3-11E9-B8FD-7907E6697425
  last_name: Monzer
- first_name: Lesia
  full_name: Rodriguez Solovey, Lesia
  id: 3922B506-F248-11E8-B48F-1D18A9856A87
  last_name: Rodriguez Solovey
  orcid: 0000-0002-7244-7237
- first_name: Mark
  full_name: Roosjen, Mark
  last_name: Roosjen
- first_name: Inge
  full_name: Verstraeten, Inge
  id: 362BF7FE-F248-11E8-B48F-1D18A9856A87
  last_name: Verstraeten
  orcid: 0000-0001-7241-2328
- first_name: Branka D.
  full_name: Živanović, Branka D.
  last_name: Živanović
- first_name: Minxia
  full_name: Zou, Minxia
  id: 5c243f41-03f3-11ec-841c-96faf48a7ef9
  last_name: Zou
- first_name: Lukas
  full_name: Fiedler, Lukas
  id: 7c417475-8972-11ed-ae7b-8b674ca26986
  last_name: Fiedler
- first_name: Caterina
  full_name: Giannini, Caterina
  id: e3fdddd5-f6e0-11ea-865d-ca99ee6367f4
  last_name: Giannini
- first_name: Peter
  full_name: Grones, Peter
  last_name: Grones
- first_name: Mónika
  full_name: Hrtyan, Mónika
  id: 45A71A74-F248-11E8-B48F-1D18A9856A87
  last_name: Hrtyan
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: Andre
  full_name: Kuhn, Andre
  last_name: Kuhn
- first_name: Madhumitha
  full_name: Narasimhan, Madhumitha
  id: 44BF24D0-F248-11E8-B48F-1D18A9856A87
  last_name: Narasimhan
  orcid: 0000-0002-8600-0671
- first_name: Marek
  full_name: Randuch, Marek
  id: 6ac4636d-15b2-11ec-abd3-fb8df79972ae
  last_name: Randuch
- first_name: Nikola
  full_name: Rýdza, Nikola
  last_name: Rýdza
- first_name: Koji
  full_name: Takahashi, Koji
  last_name: Takahashi
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Anastasiia
  full_name: Teplova, Anastasiia
  id: e3736151-106c-11ec-b916-c2558e2762c6
  last_name: Teplova
- first_name: Toshinori
  full_name: Kinoshita, Toshinori
  last_name: Kinoshita
- first_name: Dolf
  full_name: Weijers, Dolf
  last_name: Weijers
- first_name: Hana
  full_name: Rakusová, Hana
  last_name: Rakusová
citation:
  ama: Friml J, Gallei MC, Gelová Z, et al. ABP1–TMK auxin perception for global phosphorylation
    and auxin canalization. <i>Nature</i>. 2022;609(7927):575-581. doi:<a href="https://doi.org/10.1038/s41586-022-05187-x">10.1038/s41586-022-05187-x</a>
  apa: Friml, J., Gallei, M. C., Gelová, Z., Johnson, A. J., Mazur, E., Monzer, A.,
    … Rakusová, H. (2022). ABP1–TMK auxin perception for global phosphorylation and
    auxin canalization. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-022-05187-x">https://doi.org/10.1038/s41586-022-05187-x</a>
  chicago: Friml, Jiří, Michelle C Gallei, Zuzana Gelová, Alexander J Johnson, Ewa
    Mazur, Aline Monzer, Lesia Rodriguez Solovey, et al. “ABP1–TMK Auxin Perception
    for Global Phosphorylation and Auxin Canalization.” <i>Nature</i>. Springer Nature,
    2022. <a href="https://doi.org/10.1038/s41586-022-05187-x">https://doi.org/10.1038/s41586-022-05187-x</a>.
  ieee: J. Friml <i>et al.</i>, “ABP1–TMK auxin perception for global phosphorylation
    and auxin canalization,” <i>Nature</i>, vol. 609, no. 7927. Springer Nature, pp.
    575–581, 2022.
  ista: Friml J, Gallei MC, Gelová Z, Johnson AJ, Mazur E, Monzer A, Rodriguez Solovey
    L, Roosjen M, Verstraeten I, Živanović BD, Zou M, Fiedler L, Giannini C, Grones
    P, Hrtyan M, Kaufmann W, Kuhn A, Narasimhan M, Randuch M, Rýdza N, Takahashi K,
    Tan S, Teplova A, Kinoshita T, Weijers D, Rakusová H. 2022. ABP1–TMK auxin perception
    for global phosphorylation and auxin canalization. Nature. 609(7927), 575–581.
  mla: Friml, Jiří, et al. “ABP1–TMK Auxin Perception for Global Phosphorylation and
    Auxin Canalization.” <i>Nature</i>, vol. 609, no. 7927, Springer Nature, 2022,
    pp. 575–81, doi:<a href="https://doi.org/10.1038/s41586-022-05187-x">10.1038/s41586-022-05187-x</a>.
  short: J. Friml, M.C. Gallei, Z. Gelová, A.J. Johnson, E. Mazur, A. Monzer, L. Rodriguez
    Solovey, M. Roosjen, I. Verstraeten, B.D. Živanović, M. Zou, L. Fiedler, C. Giannini,
    P. Grones, M. Hrtyan, W. Kaufmann, A. Kuhn, M. Narasimhan, M. Randuch, N. Rýdza,
    K. Takahashi, S. Tan, A. Teplova, T. Kinoshita, D. Weijers, H. Rakusová, Nature
    609 (2022) 575–581.
date_created: 2023-01-16T10:04:48Z
date_published: 2022-09-15T00:00:00Z
date_updated: 2023-11-07T08:16:09Z
day: '15'
ddc:
- '580'
department:
- _id: JiFr
- _id: GradSch
- _id: EvBe
- _id: EM-Fac
doi: 10.1038/s41586-022-05187-x
ec_funded: 1
external_id:
  isi:
  - '000851357500002'
  pmid:
  - '36071161'
file:
- access_level: open_access
  checksum: a6055c606aefb900bf62ae3e7d15f921
  content_type: application/pdf
  creator: amally
  date_created: 2023-11-02T17:12:37Z
  date_updated: 2023-11-02T17:12:37Z
  file_id: '14483'
  file_name: Friml Nature 2022_merged.pdf
  file_size: 79774945
  relation: main_file
  success: 1
file_date_updated: 2023-11-02T17:12:37Z
has_accepted_license: '1'
intvolume: '       609'
isi: 1
issue: '7927'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Submitted Version
page: 575-581
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 262EF96E-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P29988
  name: RNA-directed DNA methylation in plant development
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: ABP1–TMK auxin perception for global phosphorylation and auxin canalization
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 609
year: '2022'
...
---
_id: '8582'
abstract:
- lang: eng
  text: "Cell and tissue polarization is fundamental for plant growth and morphogenesis.
    The polar, cellular localization of Arabidopsis PIN‐FORMED (PIN) proteins is crucial
    for their function in directional auxin transport. The clustering of PIN polar
    cargoes within the plasma membrane has been proposed to be important for the maintenance
    of their polar distribution. However, the more detailed features of PIN clusters
    and the cellular requirements of cargo clustering remain unclear.\r\nHere, we
    characterized PIN clusters in detail by means of multiple advanced microscopy
    and quantification methods, such as 3D quantitative imaging or freeze‐fracture
    replica labeling. The size and aggregation types of PIN clusters were determined
    by electron microscopy at the nanometer level at different polar domains and at
    different developmental stages, revealing a strong preference for clustering at
    the polar domains.\r\nPharmacological and genetic studies revealed that PIN clusters
    depend on phosphoinositol pathways, cytoskeletal structures and specific cell‐wall
    components as well as connections between the cell wall and the plasma membrane.\r\nThis
    study identifies the role of different cellular processes and structures in polar
    cargo clustering and provides initial mechanistic insight into the maintenance
    of polarity in plants and other systems."
acknowledged_ssus:
- _id: Bio
acknowledgement: We thank Dr Ingo Heilmann (Martin‐Luther‐University Halle‐Wittenberg)
  for the XVE>>PIP5K1‐YFP line, Dr Brad Day (Michigan State University) for the ndr1‐1
  mutant and the complementation lines, and Dr Patricia C. Zambryski (University of
  California, Berkeley) for the 35S::P30‐GFP line, the Bioimaging team (IST Austria)
  for assistance with imaging, group members for discussions, Martine De Cock for
  help in preparing the manuscript and Nataliia Gnyliukh for critical reading and
  revision of the manuscript. This project received funding from the European Research
  Council (ERC) under the European Union's Horizon 2020 research and innovation program
  (grant agreement No. 742985) and Comisión Nacional de Investigación Científica y
  Tecnológica (Project CONICYT‐PAI 82130047). DvW received funding from the People
  Programme (Marie Curie Actions) of the European Union’s Seventh Framework Programme
  (FP7/2007‐2013) under REA grant agreement no. 291734.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Hongjiang
  full_name: Li, Hongjiang
  id: 33CA54A6-F248-11E8-B48F-1D18A9856A87
  last_name: Li
  orcid: 0000-0001-5039-9660
- first_name: Daniel
  full_name: von Wangenheim, Daniel
  id: 49E91952-F248-11E8-B48F-1D18A9856A87
  last_name: von Wangenheim
  orcid: 0000-0002-6862-1247
- first_name: Xixi
  full_name: Zhang, Xixi
  id: 61A66458-47E9-11EA-85BA-8AEAAF14E49A
  last_name: Zhang
  orcid: 0000-0001-7048-4627
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Nasser
  full_name: Darwish-Miranda, Nasser
  id: 39CD9926-F248-11E8-B48F-1D18A9856A87
  last_name: Darwish-Miranda
  orcid: 0000-0002-8821-8236
- first_name: Satoshi
  full_name: Naramoto, Satoshi
  last_name: Naramoto
- first_name: Krzysztof T
  full_name: Wabnik, Krzysztof T
  id: 4DE369A4-F248-11E8-B48F-1D18A9856A87
  last_name: Wabnik
  orcid: 0000-0001-7263-0560
- first_name: Riet
  full_name: de Rycke, Riet
  last_name: de Rycke
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: Daniel J
  full_name: Gütl, Daniel J
  id: 381929CE-F248-11E8-B48F-1D18A9856A87
  last_name: Gütl
- first_name: Ricardo
  full_name: Tejos, Ricardo
  last_name: Tejos
- first_name: Peter
  full_name: Grones, Peter
  id: 399876EC-F248-11E8-B48F-1D18A9856A87
  last_name: Grones
- first_name: Meiyu
  full_name: Ke, Meiyu
  last_name: Ke
- first_name: Xu
  full_name: Chen, Xu
  id: 4E5ADCAA-F248-11E8-B48F-1D18A9856A87
  last_name: Chen
- first_name: Jan
  full_name: Dettmer, Jan
  last_name: Dettmer
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Li H, von Wangenheim D, Zhang X, et al. Cellular requirements for PIN polar
    cargo clustering in Arabidopsis thaliana. <i>New Phytologist</i>. 2021;229(1):351-369.
    doi:<a href="https://doi.org/10.1111/nph.16887">10.1111/nph.16887</a>
  apa: Li, H., von Wangenheim, D., Zhang, X., Tan, S., Darwish-Miranda, N., Naramoto,
    S., … Friml, J. (2021). Cellular requirements for PIN polar cargo clustering in
    Arabidopsis thaliana. <i>New Phytologist</i>. Wiley. <a href="https://doi.org/10.1111/nph.16887">https://doi.org/10.1111/nph.16887</a>
  chicago: Li, Hongjiang, Daniel von Wangenheim, Xixi Zhang, Shutang Tan, Nasser Darwish-Miranda,
    Satoshi Naramoto, Krzysztof T Wabnik, et al. “Cellular Requirements for PIN Polar
    Cargo Clustering in Arabidopsis Thaliana.” <i>New Phytologist</i>. Wiley, 2021.
    <a href="https://doi.org/10.1111/nph.16887">https://doi.org/10.1111/nph.16887</a>.
  ieee: H. Li <i>et al.</i>, “Cellular requirements for PIN polar cargo clustering
    in Arabidopsis thaliana,” <i>New Phytologist</i>, vol. 229, no. 1. Wiley, pp.
    351–369, 2021.
  ista: Li H, von Wangenheim D, Zhang X, Tan S, Darwish-Miranda N, Naramoto S, Wabnik
    KT, de Rycke R, Kaufmann W, Gütl DJ, Tejos R, Grones P, Ke M, Chen X, Dettmer
    J, Friml J. 2021. Cellular requirements for PIN polar cargo clustering in Arabidopsis
    thaliana. New Phytologist. 229(1), 351–369.
  mla: Li, Hongjiang, et al. “Cellular Requirements for PIN Polar Cargo Clustering
    in Arabidopsis Thaliana.” <i>New Phytologist</i>, vol. 229, no. 1, Wiley, 2021,
    pp. 351–69, doi:<a href="https://doi.org/10.1111/nph.16887">10.1111/nph.16887</a>.
  short: H. Li, D. von Wangenheim, X. Zhang, S. Tan, N. Darwish-Miranda, S. Naramoto,
    K.T. Wabnik, R. de Rycke, W. Kaufmann, D.J. Gütl, R. Tejos, P. Grones, M. Ke,
    X. Chen, J. Dettmer, J. Friml, New Phytologist 229 (2021) 351–369.
date_created: 2020-09-28T08:59:28Z
date_published: 2021-01-01T00:00:00Z
date_updated: 2023-08-04T11:01:21Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
- _id: EM-Fac
- _id: Bio
- _id: EvBe
doi: 10.1111/nph.16887
ec_funded: 1
external_id:
  isi:
  - '000570187900001'
file:
- access_level: open_access
  checksum: b45621607b4cab97eeb1605ab58e896e
  content_type: application/pdf
  creator: dernst
  date_created: 2021-02-04T09:44:17Z
  date_updated: 2021-02-04T09:44:17Z
  file_id: '9084'
  file_name: 2021_NewPhytologist_Li.pdf
  file_size: 4061962
  relation: main_file
  success: 1
file_date_updated: 2021-02-04T09:44:17Z
has_accepted_license: '1'
intvolume: '       229'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 351-369
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: New Phytologist
publication_identifier:
  eissn:
  - '14698137'
  issn:
  - 0028646X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cellular requirements for PIN polar cargo clustering in Arabidopsis thaliana
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 229
year: '2021'
...
---
_id: '8608'
abstract:
- lang: eng
  text: To adapt to the diverse array of biotic and abiotic cues, plants have evolved
    sophisticated mechanisms to sense changes in environmental conditions and modulate
    their growth. Growth-promoting hormones and defence signalling fine tune plant
    development antagonistically. During host-pathogen interactions, this defence-growth
    trade-off is mediated by the counteractive effects of the defence hormone salicylic
    acid (SA) and the growth hormone auxin. Here we revealed an underlying mechanism
    of SA regulating auxin signalling by constraining the plasma membrane dynamics
    of PIN2 auxin efflux transporter in Arabidopsis thaliana roots. The lateral diffusion
    of PIN2 proteins is constrained by SA signalling, during which PIN2 proteins are
    condensed into hyperclusters depending on REM1.2-mediated nanodomain compartmentalisation.
    Furthermore, membrane nanodomain compartmentalisation by SA or Remorin (REM) assembly
    significantly suppressed clathrin-mediated endocytosis. Consequently, SA-induced
    heterogeneous surface condensation disrupted asymmetric auxin distribution and
    the resultant gravitropic response. Our results demonstrated a defence-growth
    trade-off mechanism by which SA signalling crosstalked with auxin transport by
    concentrating membrane-resident PIN2 into heterogeneous compartments.
acknowledgement: This work was supported by the National Key Research andDevelopment
  Programme of China (2017YFA0506100), theNational Natural Science Foundation of China
  (31870170 and31701168), and the Fok Ying Tung Education Foundation(161027) to XC;
  NTU startup grant (M4081533) and NIM/01/2016 (NTU, Singapore) to YM. We thank Lei
  Shi andZhongquan Lin for microscopy assistance.
article_processing_charge: No
article_type: original
author:
- first_name: M
  full_name: Ke, M
  last_name: Ke
- first_name: Z
  full_name: Ma, Z
  last_name: Ma
- first_name: D
  full_name: Wang, D
  last_name: Wang
- first_name: Y
  full_name: Sun, Y
  last_name: Sun
- first_name: C
  full_name: Wen, C
  last_name: Wen
- first_name: D
  full_name: Huang, D
  last_name: Huang
- first_name: Z
  full_name: Chen, Z
  last_name: Chen
- first_name: L
  full_name: Yang, L
  last_name: Yang
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: R
  full_name: Li, R
  last_name: Li
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Y
  full_name: Miao, Y
  last_name: Miao
- first_name: X
  full_name: Chen, X
  last_name: Chen
citation:
  ama: Ke M, Ma Z, Wang D, et al. Salicylic acid regulates PIN2 auxin transporter
    hyper-clustering and root gravitropic growth via Remorin-dependent lipid nanodomain
    organization in Arabidopsis thaliana. <i>New Phytologist</i>. 2021;229(2):963-978.
    doi:<a href="https://doi.org/10.1111/nph.16915">10.1111/nph.16915</a>
  apa: Ke, M., Ma, Z., Wang, D., Sun, Y., Wen, C., Huang, D., … Chen, X. (2021). Salicylic
    acid regulates PIN2 auxin transporter hyper-clustering and root gravitropic growth
    via Remorin-dependent lipid nanodomain organization in Arabidopsis thaliana. <i>New
    Phytologist</i>. Wiley. <a href="https://doi.org/10.1111/nph.16915">https://doi.org/10.1111/nph.16915</a>
  chicago: Ke, M, Z Ma, D Wang, Y Sun, C Wen, D Huang, Z Chen, et al. “Salicylic Acid
    Regulates PIN2 Auxin Transporter Hyper-Clustering and Root Gravitropic Growth
    via Remorin-Dependent Lipid Nanodomain Organization in Arabidopsis Thaliana.”
    <i>New Phytologist</i>. Wiley, 2021. <a href="https://doi.org/10.1111/nph.16915">https://doi.org/10.1111/nph.16915</a>.
  ieee: M. Ke <i>et al.</i>, “Salicylic acid regulates PIN2 auxin transporter hyper-clustering
    and root gravitropic growth via Remorin-dependent lipid nanodomain organization
    in Arabidopsis thaliana,” <i>New Phytologist</i>, vol. 229, no. 2. Wiley, pp.
    963–978, 2021.
  ista: Ke M, Ma Z, Wang D, Sun Y, Wen C, Huang D, Chen Z, Yang L, Tan S, Li R, Friml
    J, Miao Y, Chen X. 2021. Salicylic acid regulates PIN2 auxin transporter hyper-clustering
    and root gravitropic growth via Remorin-dependent lipid nanodomain organization
    in Arabidopsis thaliana. New Phytologist. 229(2), 963–978.
  mla: Ke, M., et al. “Salicylic Acid Regulates PIN2 Auxin Transporter Hyper-Clustering
    and Root Gravitropic Growth via Remorin-Dependent Lipid Nanodomain Organization
    in Arabidopsis Thaliana.” <i>New Phytologist</i>, vol. 229, no. 2, Wiley, 2021,
    pp. 963–78, doi:<a href="https://doi.org/10.1111/nph.16915">10.1111/nph.16915</a>.
  short: M. Ke, Z. Ma, D. Wang, Y. Sun, C. Wen, D. Huang, Z. Chen, L. Yang, S. Tan,
    R. Li, J. Friml, Y. Miao, X. Chen, New Phytologist 229 (2021) 963–978.
date_created: 2020-10-05T12:45:36Z
date_published: 2021-01-01T00:00:00Z
date_updated: 2023-09-05T16:06:24Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/nph.16915
external_id:
  isi:
  - '000573568000001'
  pmid:
  - '32901934'
file:
- access_level: open_access
  checksum: d36b6a8c6fafab66264e0d27114dae63
  content_type: application/pdf
  creator: dernst
  date_created: 2021-02-04T09:53:16Z
  date_updated: 2021-02-04T09:53:16Z
  file_id: '9085'
  file_name: 2021_NewPhytologist_Ke.pdf
  file_size: 3674502
  relation: main_file
  success: 1
file_date_updated: 2021-02-04T09:53:16Z
has_accepted_license: '1'
intvolume: '       229'
isi: 1
issue: '2'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 963-978
pmid: 1
publication: New Phytologist
publication_identifier:
  eissn:
  - 1469-8137
  issn:
  - 0028-646x
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Salicylic acid regulates PIN2 auxin transporter hyper-clustering and root gravitropic
  growth via Remorin-dependent lipid nanodomain organization in Arabidopsis thaliana
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 229
year: '2021'
...
---
_id: '8992'
abstract:
- lang: eng
  text: The phytohormone auxin plays a central role in shaping plant growth and development.
    With decades of genetic and biochemical studies, numerous core molecular components
    and their networks, underlying auxin biosynthesis, transport, and signaling, have
    been identified. Notably, protein phosphorylation, catalyzed by kinases and oppositely
    hydrolyzed by phosphatases, has been emerging to be a crucial type of post-translational
    modification, regulating physiological and developmental auxin output at all levels.
    In this review, we comprehensively discuss earlier and recent advances in our
    understanding of genetics, biochemistry, and cell biology of the kinases and phosphatases
    participating in auxin action. We provide insights into the mechanisms by which
    reversible protein phosphorylation defines developmental auxin responses, discuss
    current challenges, and provide our perspectives on future directions involving
    the integration of the control of protein phosphorylation into the molecular auxin
    network.
acknowledgement: This work was supported by the European Union’s Horizon 2020 Program
  (ERC grant agreement no. 742985 to J.F.). S.T. was funded by a European Molecular
  Biology Organization (EMBO) long-term postdoctoral fellowship (ALTF 723-2015). C.L.
  is supported by the Austrian Science Fund (FWF; P 31493).
article_processing_charge: No
article_type: original
author:
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Christian
  full_name: Luschnig, Christian
  last_name: Luschnig
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: 'Tan S, Luschnig C, Friml J. Pho-view of auxin: Reversible protein phosphorylation
    in auxin biosynthesis, transport and signaling. <i>Molecular Plant</i>. 2021;14(1):151-165.
    doi:<a href="https://doi.org/10.1016/j.molp.2020.11.004">10.1016/j.molp.2020.11.004</a>'
  apa: 'Tan, S., Luschnig, C., &#38; Friml, J. (2021). Pho-view of auxin: Reversible
    protein phosphorylation in auxin biosynthesis, transport and signaling. <i>Molecular
    Plant</i>. Elsevier. <a href="https://doi.org/10.1016/j.molp.2020.11.004">https://doi.org/10.1016/j.molp.2020.11.004</a>'
  chicago: 'Tan, Shutang, Christian Luschnig, and Jiří Friml. “Pho-View of Auxin:
    Reversible Protein Phosphorylation in Auxin Biosynthesis, Transport and Signaling.”
    <i>Molecular Plant</i>. Elsevier, 2021. <a href="https://doi.org/10.1016/j.molp.2020.11.004">https://doi.org/10.1016/j.molp.2020.11.004</a>.'
  ieee: 'S. Tan, C. Luschnig, and J. Friml, “Pho-view of auxin: Reversible protein
    phosphorylation in auxin biosynthesis, transport and signaling,” <i>Molecular
    Plant</i>, vol. 14, no. 1. Elsevier, pp. 151–165, 2021.'
  ista: 'Tan S, Luschnig C, Friml J. 2021. Pho-view of auxin: Reversible protein phosphorylation
    in auxin biosynthesis, transport and signaling. Molecular Plant. 14(1), 151–165.'
  mla: 'Tan, Shutang, et al. “Pho-View of Auxin: Reversible Protein Phosphorylation
    in Auxin Biosynthesis, Transport and Signaling.” <i>Molecular Plant</i>, vol.
    14, no. 1, Elsevier, 2021, pp. 151–65, doi:<a href="https://doi.org/10.1016/j.molp.2020.11.004">10.1016/j.molp.2020.11.004</a>.'
  short: S. Tan, C. Luschnig, J. Friml, Molecular Plant 14 (2021) 151–165.
date_created: 2021-01-03T23:01:23Z
date_published: 2021-01-04T00:00:00Z
date_updated: 2023-08-04T11:21:13Z
day: '04'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1016/j.molp.2020.11.004
ec_funded: 1
external_id:
  isi:
  - '000605359400014'
  pmid:
  - '33186755'
file:
- access_level: open_access
  checksum: 917e60e57092f22e16beac70b1775ea6
  content_type: application/pdf
  creator: dernst
  date_created: 2021-01-07T14:03:53Z
  date_updated: 2021-01-07T14:03:53Z
  file_id: '8995'
  file_name: 2020_MolecularPlant_Tan.pdf
  file_size: 871088
  relation: main_file
  success: 1
file_date_updated: 2021-01-07T14:03:53Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 151-165
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 256FEF10-B435-11E9-9278-68D0E5697425
  grant_number: 723-2015
  name: Long Term Fellowship
publication: Molecular Plant
publication_identifier:
  eissn:
  - '17529867'
  issn:
  - '16742052'
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Pho-view of auxin: Reversible protein phosphorylation in auxin biosynthesis,
  transport and signaling'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 14
year: '2021'
...
---
_id: '9010'
abstract:
- lang: eng
  text: Availability of the essential macronutrient nitrogen in soil plays a critical
    role in plant growth, development, and impacts agricultural productivity. Plants
    have evolved different strategies for sensing and responding to heterogeneous
    nitrogen distribution. Modulation of root system architecture, including primary
    root growth and branching, is among the most essential plant adaptions to ensure
    adequate nitrogen acquisition. However, the immediate molecular pathways coordinating
    the adjustment of root growth in response to distinct nitrogen sources, such as
    nitrate or ammonium, are poorly understood. Here, we show that growth as manifested
    by cell division and elongation is synchronized by coordinated auxin flux between
    two adjacent outer tissue layers of the root. This coordination is achieved by
    nitrate‐dependent dephosphorylation of the PIN2 auxin efflux carrier at a previously
    uncharacterized phosphorylation site, leading to subsequent PIN2 lateralization
    and thereby regulating auxin flow between adjacent tissues. A dynamic computer
    model based on our experimental data successfully recapitulates experimental observations.
    Our study provides mechanistic insights broadening our understanding of root growth
    mechanisms in dynamic environments.
acknowledged_ssus:
- _id: Bio
acknowledgement: 'We acknowledge Gergely Molnar for critical reading of the manuscript,
  Alexander Johnson for language editing and Yulija Salanenka for technical assistance.
  Work in the Benkova laboratory was supported by the Austrian Science Fund (FWF01_I1774S)
  to KO, RA and EB. Work in the Benkova laboratory was supported by the Austrian Science
  Fund (FWF01_I1774S) to KO, RA and EB and by the DOC Fellowship Programme of the
  AustrianAcademy of Sciences (25008) to C.A. Work in the Wabnik laboratory was supported
  by the Programa de Atraccion de Talento 2017 (Comunidad deMadrid, 2017-T1/BIO-5654
  to K.W.), Severo Ochoa Programme for Centres of Excellence in R&D from the Agencia
  Estatal de Investigacion of Spain (grantSEV-2016-0672 (2017-2021) to K.W. via the
  CBGP) and Programa Estatal de Generacion del Conocimiento y Fortalecimiento Científico
  y Tecnologico del Sistema de I+D+I 2019 (PGC2018-093387-A-I00) from MICIU (to K.W.).
  M.M.was supported by a postdoctoral contract associated to SEV-2016-0672.We acknowledge
  the Bioimaging Facility in IST-Austria and the Advanced Microscopy Facility of the
  Vienna Bio Center Core Facilities, member of the Vienna Bio Center Austria, for
  use of the OMX v43D SIM microscope. AJ was supported by the Austrian Science Fund
  (FWF): I03630 to J.F'
article_number: e106862
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Krisztina
  full_name: Ötvös, Krisztina
  id: 29B901B0-F248-11E8-B48F-1D18A9856A87
  last_name: Ötvös
  orcid: 0000-0002-5503-4983
- first_name: Marco
  full_name: Marconi, Marco
  last_name: Marconi
- first_name: Andrea
  full_name: Vega, Andrea
  last_name: Vega
- first_name: Jose
  full_name: O’Brien, Jose
  last_name: O’Brien
- first_name: Alexander J
  full_name: Johnson, Alexander J
  id: 46A62C3A-F248-11E8-B48F-1D18A9856A87
  last_name: Johnson
  orcid: 0000-0002-2739-8843
- first_name: Rashed
  full_name: Abualia, Rashed
  id: 4827E134-F248-11E8-B48F-1D18A9856A87
  last_name: Abualia
  orcid: 0000-0002-9357-9415
- first_name: Livio
  full_name: Antonielli, Livio
  last_name: Antonielli
- first_name: Juan C
  full_name: Montesinos López, Juan C
  id: 310A8E3E-F248-11E8-B48F-1D18A9856A87
  last_name: Montesinos López
  orcid: 0000-0001-9179-6099
- first_name: Yuzhou
  full_name: Zhang, Yuzhou
  id: 3B6137F2-F248-11E8-B48F-1D18A9856A87
  last_name: Zhang
  orcid: 0000-0003-2627-6956
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Candela
  full_name: Cuesta, Candela
  id: 33A3C818-F248-11E8-B48F-1D18A9856A87
  last_name: Cuesta
  orcid: 0000-0003-1923-2410
- first_name: Christina
  full_name: Artner, Christina
  id: 45DF286A-F248-11E8-B48F-1D18A9856A87
  last_name: Artner
- first_name: Eleonore
  full_name: Bouguyon, Eleonore
  last_name: Bouguyon
- first_name: Alain
  full_name: Gojon, Alain
  last_name: Gojon
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Rodrigo A.
  full_name: Gutiérrez, Rodrigo A.
  last_name: Gutiérrez
- first_name: Krzysztof T
  full_name: Wabnik, Krzysztof T
  id: 4DE369A4-F248-11E8-B48F-1D18A9856A87
  last_name: Wabnik
  orcid: 0000-0001-7263-0560
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
citation:
  ama: Ötvös K, Marconi M, Vega A, et al. Modulation of plant root growth by nitrogen
    source-defined regulation of polar auxin transport. <i>EMBO Journal</i>. 2021;40(3).
    doi:<a href="https://doi.org/10.15252/embj.2020106862">10.15252/embj.2020106862</a>
  apa: Ötvös, K., Marconi, M., Vega, A., O’Brien, J., Johnson, A. J., Abualia, R.,
    … Benková, E. (2021). Modulation of plant root growth by nitrogen source-defined
    regulation of polar auxin transport. <i>EMBO Journal</i>. Embo Press. <a href="https://doi.org/10.15252/embj.2020106862">https://doi.org/10.15252/embj.2020106862</a>
  chicago: Ötvös, Krisztina, Marco Marconi, Andrea Vega, Jose O’Brien, Alexander J
    Johnson, Rashed Abualia, Livio Antonielli, et al. “Modulation of Plant Root Growth
    by Nitrogen Source-Defined Regulation of Polar Auxin Transport.” <i>EMBO Journal</i>.
    Embo Press, 2021. <a href="https://doi.org/10.15252/embj.2020106862">https://doi.org/10.15252/embj.2020106862</a>.
  ieee: K. Ötvös <i>et al.</i>, “Modulation of plant root growth by nitrogen source-defined
    regulation of polar auxin transport,” <i>EMBO Journal</i>, vol. 40, no. 3. Embo
    Press, 2021.
  ista: Ötvös K, Marconi M, Vega A, O’Brien J, Johnson AJ, Abualia R, Antonielli L,
    Montesinos López JC, Zhang Y, Tan S, Cuesta C, Artner C, Bouguyon E, Gojon A,
    Friml J, Gutiérrez RA, Wabnik KT, Benková E. 2021. Modulation of plant root growth
    by nitrogen source-defined regulation of polar auxin transport. EMBO Journal.
    40(3), e106862.
  mla: Ötvös, Krisztina, et al. “Modulation of Plant Root Growth by Nitrogen Source-Defined
    Regulation of Polar Auxin Transport.” <i>EMBO Journal</i>, vol. 40, no. 3, e106862,
    Embo Press, 2021, doi:<a href="https://doi.org/10.15252/embj.2020106862">10.15252/embj.2020106862</a>.
  short: K. Ötvös, M. Marconi, A. Vega, J. O’Brien, A.J. Johnson, R. Abualia, L. Antonielli,
    J.C. Montesinos López, Y. Zhang, S. Tan, C. Cuesta, C. Artner, E. Bouguyon, A.
    Gojon, J. Friml, R.A. Gutiérrez, K.T. Wabnik, E. Benková, EMBO Journal 40 (2021).
date_created: 2021-01-17T23:01:12Z
date_published: 2021-02-01T00:00:00Z
date_updated: 2024-03-25T23:30:22Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
- _id: EvBe
doi: 10.15252/embj.2020106862
external_id:
  isi:
  - '000604645600001'
  pmid:
  - ' 33399250'
file:
- access_level: open_access
  checksum: dc55c900f3b061d6c2790b8813d759a3
  content_type: application/pdf
  creator: dernst
  date_created: 2021-02-11T12:28:29Z
  date_updated: 2021-02-11T12:28:29Z
  file_id: '9110'
  file_name: 2021_Embo_Otvos.pdf
  file_size: 2358617
  relation: main_file
  success: 1
file_date_updated: 2021-02-11T12:28:29Z
has_accepted_license: '1'
intvolume: '        40'
isi: 1
issue: '3'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2542D156-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I 1774-B16
  name: Hormone cross-talk drives nutrient dependent plant development
- _id: 2685A872-B435-11E9-9278-68D0E5697425
  name: Hormonal regulation of plant adaptive responses to environmental signals
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
publication: EMBO Journal
publication_identifier:
  eissn:
  - '14602075'
  issn:
  - '02614189'
publication_status: published
publisher: Embo Press
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/a-plants-way-to-its-favorite-food/
  record:
  - id: '10303'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Modulation of plant root growth by nitrogen source-defined regulation of polar
  auxin transport
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 40
year: '2021'
...
---
_id: '9287'
abstract:
- lang: eng
  text: "The phytohormone auxin and its directional transport through tissues are
    intensively studied. However, a mechanistic understanding of auxin-mediated feedback
    on endocytosis and polar distribution of PIN auxin transporters remains limited
    due to contradictory observations and interpretations. Here, we used state-of-the-art
    methods to reexamine the\r\nauxin effects on PIN endocytic trafficking. We used
    high auxin concentrations or longer treatments versus lower concentrations and
    shorter treatments of natural (IAA) and synthetic (NAA) auxins to distinguish
    between specific and nonspecific effects. Longer treatments of both auxins interfere
    with Brefeldin A-mediated intracellular PIN2 accumulation and also with general
    aggregation of endomembrane compartments. NAA treatment decreased the internalization
    of the endocytic tracer dye, FM4-64; however, NAA treatment also affected the
    number, distribution, and compartment identity of the early endosome/trans-Golgi
    network (EE/TGN), rendering the FM4-64 endocytic assays at high NAA concentrations
    unreliable. To circumvent these nonspecific effects of NAA and IAA affecting the
    endomembrane system, we opted for alternative approaches visualizing the endocytic
    events directly at the plasma membrane (PM). Using Total Internal Reflection Fluorescence
    (TIRF) microscopy, we saw no significant effects of IAA or NAA treatments on the
    incidence and dynamics of clathrin foci, implying that these treatments do not
    affect the overall endocytosis rate. However, both NAA and IAA at low concentrations
    rapidly and specifically promoted endocytosis of photo-converted PIN2 from the
    PM. These analyses identify a specific effect of NAA and IAA on PIN2 endocytosis,
    thus contributing to its\r\npolarity maintenance and furthermore illustrate that
    high auxin levels have nonspecific effects on trafficking and endomembrane compartments. "
acknowledged_ssus:
- _id: M-Shop
- _id: Bio
acknowledgement: 'We thank Ivan Kulik for developing the Chip’n’Dale apparatus with
  Lanxin Li; the IST machine shop and the Bioimaging facility for their excellent
  support; Matouš Glanc and Matyáš Fendrych for their valuable discussions and help;
  Barbara Casillas-Perez for her help with statistics. This project has received funding
  from the European Research Council (ERC) under the European Union''s Horizon 2020
  research and innovation program (grant agreement No 742985). A.J. is supported by
  funding from the Austrian Science Fund (FWF): I3630B25 to J.F. '
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Madhumitha
  full_name: Narasimhan, Madhumitha
  id: 44BF24D0-F248-11E8-B48F-1D18A9856A87
  last_name: Narasimhan
  orcid: 0000-0002-8600-0671
- first_name: Michelle C
  full_name: Gallei, Michelle C
  id: 35A03822-F248-11E8-B48F-1D18A9856A87
  last_name: Gallei
  orcid: 0000-0003-1286-7368
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Alexander J
  full_name: Johnson, Alexander J
  id: 46A62C3A-F248-11E8-B48F-1D18A9856A87
  last_name: Johnson
  orcid: 0000-0002-2739-8843
- first_name: Inge
  full_name: Verstraeten, Inge
  id: 362BF7FE-F248-11E8-B48F-1D18A9856A87
  last_name: Verstraeten
  orcid: 0000-0001-7241-2328
- first_name: Lanxin
  full_name: Li, Lanxin
  id: 367EF8FA-F248-11E8-B48F-1D18A9856A87
  last_name: Li
  orcid: 0000-0002-5607-272X
- first_name: Lesia
  full_name: Rodriguez Solovey, Lesia
  id: 3922B506-F248-11E8-B48F-1D18A9856A87
  last_name: Rodriguez Solovey
  orcid: 0000-0002-7244-7237
- first_name: Huibin
  full_name: Han, Huibin
  id: 31435098-F248-11E8-B48F-1D18A9856A87
  last_name: Han
- first_name: E
  full_name: Himschoot, E
  last_name: Himschoot
- first_name: R
  full_name: Wang, R
  last_name: Wang
- first_name: S
  full_name: Vanneste, S
  last_name: Vanneste
- first_name: J
  full_name: Sánchez-Simarro, J
  last_name: Sánchez-Simarro
- first_name: F
  full_name: Aniento, F
  last_name: Aniento
- first_name: Maciek
  full_name: Adamowski, Maciek
  id: 45F536D2-F248-11E8-B48F-1D18A9856A87
  last_name: Adamowski
  orcid: 0000-0001-6463-5257
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Narasimhan M, Gallei MC, Tan S, et al. Systematic analysis of specific and
    nonspecific auxin effects on endocytosis and trafficking. <i>Plant Physiology</i>.
    2021;186(2):1122–1142. doi:<a href="https://doi.org/10.1093/plphys/kiab134">10.1093/plphys/kiab134</a>
  apa: Narasimhan, M., Gallei, M. C., Tan, S., Johnson, A. J., Verstraeten, I., Li,
    L., … Friml, J. (2021). Systematic analysis of specific and nonspecific auxin
    effects on endocytosis and trafficking. <i>Plant Physiology</i>. Oxford University
    Press. <a href="https://doi.org/10.1093/plphys/kiab134">https://doi.org/10.1093/plphys/kiab134</a>
  chicago: Narasimhan, Madhumitha, Michelle C Gallei, Shutang Tan, Alexander J Johnson,
    Inge Verstraeten, Lanxin Li, Lesia Rodriguez Solovey, et al. “Systematic Analysis
    of Specific and Nonspecific Auxin Effects on Endocytosis and Trafficking.” <i>Plant
    Physiology</i>. Oxford University Press, 2021. <a href="https://doi.org/10.1093/plphys/kiab134">https://doi.org/10.1093/plphys/kiab134</a>.
  ieee: M. Narasimhan <i>et al.</i>, “Systematic analysis of specific and nonspecific
    auxin effects on endocytosis and trafficking,” <i>Plant Physiology</i>, vol. 186,
    no. 2. Oxford University Press, pp. 1122–1142, 2021.
  ista: Narasimhan M, Gallei MC, Tan S, Johnson AJ, Verstraeten I, Li L, Rodriguez
    Solovey L, Han H, Himschoot E, Wang R, Vanneste S, Sánchez-Simarro J, Aniento
    F, Adamowski M, Friml J. 2021. Systematic analysis of specific and nonspecific
    auxin effects on endocytosis and trafficking. Plant Physiology. 186(2), 1122–1142.
  mla: Narasimhan, Madhumitha, et al. “Systematic Analysis of Specific and Nonspecific
    Auxin Effects on Endocytosis and Trafficking.” <i>Plant Physiology</i>, vol. 186,
    no. 2, Oxford University Press, 2021, pp. 1122–1142, doi:<a href="https://doi.org/10.1093/plphys/kiab134">10.1093/plphys/kiab134</a>.
  short: M. Narasimhan, M.C. Gallei, S. Tan, A.J. Johnson, I. Verstraeten, L. Li,
    L. Rodriguez Solovey, H. Han, E. Himschoot, R. Wang, S. Vanneste, J. Sánchez-Simarro,
    F. Aniento, M. Adamowski, J. Friml, Plant Physiology 186 (2021) 1122–1142.
date_created: 2021-03-26T12:08:38Z
date_published: 2021-06-01T00:00:00Z
date_updated: 2024-10-29T10:22:43Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1093/plphys/kiab134
ec_funded: 1
external_id:
  isi:
  - '000671555900031'
  pmid:
  - '33734402'
file:
- access_level: open_access
  checksum: 532bb9469d3b665907f06df8c383eade
  content_type: application/pdf
  creator: cziletti
  date_created: 2021-11-11T15:07:51Z
  date_updated: 2021-11-11T15:07:51Z
  file_id: '10273'
  file_name: 2021_PlantPhysio_Narasimhan.pdf
  file_size: 2289127
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  success: 1
file_date_updated: 2021-11-11T15:07:51Z
has_accepted_license: '1'
intvolume: '       186'
isi: 1
issue: '2'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 1122–1142
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
publication: Plant Physiology
publication_identifier:
  eissn:
  - 1532-2548
  issn:
  - 0032-0889
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: 10.1093/plphys/kiab380
  record:
  - id: '11626'
    relation: dissertation_contains
    status: public
  - id: '10083'
    relation: dissertation_contains
    status: public
status: public
title: Systematic analysis of specific and nonspecific auxin effects on endocytosis
  and trafficking
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 186
year: '2021'
...
---
_id: '9290'
abstract:
- lang: eng
  text: Polar subcellular localization of the PIN exporters of the phytohormone auxin
    is a key determinant of directional, intercellular auxin transport and thus a
    central topic of both plant cell and developmental biology. Arabidopsis mutants
    lacking PID, a kinase that phosphorylates PINs, or the MAB4/MEL proteins of unknown
    molecular function display PIN polarity defects and phenocopy pin mutants, but
    mechanistic insights into how these factors convey PIN polarity are missing. Here,
    by combining protein biochemistry with quantitative live-cell imaging, we demonstrate
    that PINs, MAB4/MELs, and AGC kinases interact in the same complex at the plasma
    membrane. MAB4/MELs are recruited to the plasma membrane by the PINs and in concert
    with the AGC kinases maintain PIN polarity through limiting lateral diffusion-based
    escape of PINs from the polar domain. The PIN-MAB4/MEL-PID protein complex has
    self-reinforcing properties thanks to positive feedback between AGC kinase-mediated
    PIN phosphorylation and MAB4/MEL recruitment. We thus uncover the molecular mechanism
    by which AGC kinases and MAB4/MEL proteins regulate PIN localization and plant
    development.
acknowledged_ssus:
- _id: Bio
acknowledgement: We acknowledge Ben Scheres, Christian Luschnig, and Claus Schwechheimer
  for sharing published material. We thank Monika Hrtyan and Dorota Jaworska at IST
  Austria and Gerda Lamers and Ward de Winter at IBL Netherlands for technical assistance;
  Corinna Hartinger, Jakub Hajný, Lesia Rodriguez, Mingyue Li, and Lindy Abas for
  experimental support; and the Bioimaging Facility at IST Austria and the Bioimaging
  Core at VIB for imaging support. We are grateful to Christian Luschnig, Lindy Abas,
  and Roman Pleskot for valuable discussions. We also acknowledge the EMBO for supporting
  M.G. with a long-term fellowship ( ALTF 1005-2019 ) during the finalization and
  revision of this manuscript in the laboratory of B.D.R., and we thank R. Pierik
  for allowing K.V.G. to work on this manuscript during a postdoc in his laboratory
  at Utrecht University. This work was supported by grants from the European Research
  Council under the European Union’s Seventh Framework Programme (ERC grant agreements
  742985 to J.F., 714055 to B.D.R., and 803048 to M.F.), the Austrian Science Fund
  (FWF; I 3630-B25 to J.F.), Chemical Sciences (partly) financed by the Dutch Research
  Council (NWO-CW TOP 700.58.301 to R.O.), the Dutch Research Council (NWO-VICI 865.17.002
  to R. Pierik), Grants-in-Aid from the Ministry of Education, Culture, Sports, Science
  and Technology, Japan (KAKENHI grant 17K17595 to S.N.), the Ministry of Education,
  Youth and Sports of the Czech Republic (MŠMT project NPUI-LO1417 ), and a China
  Scholarship Council (to X.W.).
article_processing_charge: No
article_type: original
author:
- first_name: Matous
  full_name: Glanc, Matous
  id: 1AE1EA24-02D0-11E9-9BAA-DAF4881429F2
  last_name: Glanc
  orcid: 0000-0003-0619-7783
- first_name: K
  full_name: Van Gelderen, K
  last_name: Van Gelderen
- first_name: Lukas
  full_name: Hörmayer, Lukas
  id: 2EEE7A2A-F248-11E8-B48F-1D18A9856A87
  last_name: Hörmayer
  orcid: 0000-0001-8295-2926
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: S
  full_name: Naramoto, S
  last_name: Naramoto
- first_name: Xixi
  full_name: Zhang, Xixi
  id: 61A66458-47E9-11EA-85BA-8AEAAF14E49A
  last_name: Zhang
  orcid: 0000-0001-7048-4627
- first_name: David
  full_name: Domjan, David
  id: C684CD7A-257E-11EA-9B6F-D8588B4F947F
  last_name: Domjan
  orcid: 0000-0003-2267-106X
- first_name: L
  full_name: Vcelarova, L
  last_name: Vcelarova
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
- first_name: Alexander J
  full_name: Johnson, Alexander J
  id: 46A62C3A-F248-11E8-B48F-1D18A9856A87
  last_name: Johnson
  orcid: 0000-0002-2739-8843
- first_name: E
  full_name: de Koning, E
  last_name: de Koning
- first_name: M
  full_name: van Dop, M
  last_name: van Dop
- first_name: E
  full_name: Rademacher, E
  last_name: Rademacher
- first_name: S
  full_name: Janson, S
  last_name: Janson
- first_name: X
  full_name: Wei, X
  last_name: Wei
- first_name: Gergely
  full_name: Molnar, Gergely
  id: 34F1AF46-F248-11E8-B48F-1D18A9856A87
  last_name: Molnar
- first_name: Matyas
  full_name: Fendrych, Matyas
  id: 43905548-F248-11E8-B48F-1D18A9856A87
  last_name: Fendrych
  orcid: 0000-0002-9767-8699
- first_name: B
  full_name: De Rybel, B
  last_name: De Rybel
- first_name: R
  full_name: Offringa, R
  last_name: Offringa
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Glanc M, Van Gelderen K, Hörmayer L, et al. AGC kinases and MAB4/MEL proteins
    maintain PIN polarity by limiting lateral diffusion in plant cells. <i>Current
    Biology</i>. 2021;31(9):1918-1930. doi:<a href="https://doi.org/10.1016/j.cub.2021.02.028">10.1016/j.cub.2021.02.028</a>
  apa: Glanc, M., Van Gelderen, K., Hörmayer, L., Tan, S., Naramoto, S., Zhang, X.,
    … Friml, J. (2021). AGC kinases and MAB4/MEL proteins maintain PIN polarity by
    limiting lateral diffusion in plant cells. <i>Current Biology</i>. Elsevier. <a
    href="https://doi.org/10.1016/j.cub.2021.02.028">https://doi.org/10.1016/j.cub.2021.02.028</a>
  chicago: Glanc, Matous, K Van Gelderen, Lukas Hörmayer, Shutang Tan, S Naramoto,
    Xixi Zhang, David Domjan, et al. “AGC Kinases and MAB4/MEL Proteins Maintain PIN
    Polarity by Limiting Lateral Diffusion in Plant Cells.” <i>Current Biology</i>.
    Elsevier, 2021. <a href="https://doi.org/10.1016/j.cub.2021.02.028">https://doi.org/10.1016/j.cub.2021.02.028</a>.
  ieee: M. Glanc <i>et al.</i>, “AGC kinases and MAB4/MEL proteins maintain PIN polarity
    by limiting lateral diffusion in plant cells,” <i>Current Biology</i>, vol. 31,
    no. 9. Elsevier, pp. 1918–1930, 2021.
  ista: Glanc M, Van Gelderen K, Hörmayer L, Tan S, Naramoto S, Zhang X, Domjan D,
    Vcelarova L, Hauschild R, Johnson AJ, de Koning E, van Dop M, Rademacher E, Janson
    S, Wei X, Molnar G, Fendrych M, De Rybel B, Offringa R, Friml J. 2021. AGC kinases
    and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant
    cells. Current Biology. 31(9), 1918–1930.
  mla: Glanc, Matous, et al. “AGC Kinases and MAB4/MEL Proteins Maintain PIN Polarity
    by Limiting Lateral Diffusion in Plant Cells.” <i>Current Biology</i>, vol. 31,
    no. 9, Elsevier, 2021, pp. 1918–30, doi:<a href="https://doi.org/10.1016/j.cub.2021.02.028">10.1016/j.cub.2021.02.028</a>.
  short: M. Glanc, K. Van Gelderen, L. Hörmayer, S. Tan, S. Naramoto, X. Zhang, D.
    Domjan, L. Vcelarova, R. Hauschild, A.J. Johnson, E. de Koning, M. van Dop, E.
    Rademacher, S. Janson, X. Wei, G. Molnar, M. Fendrych, B. De Rybel, R. Offringa,
    J. Friml, Current Biology 31 (2021) 1918–1930.
date_created: 2021-03-26T12:09:33Z
date_published: 2021-03-10T00:00:00Z
date_updated: 2023-09-05T13:03:34Z
day: '10'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1016/j.cub.2021.02.028
ec_funded: 1
external_id:
  isi:
  - '000653077800004'
  pmid:
  - '33705718'
file:
- access_level: open_access
  checksum: b1723040ecfd8c81194185472eb62546
  content_type: application/pdf
  creator: dernst
  date_created: 2021-04-01T10:53:42Z
  date_updated: 2021-04-01T10:53:42Z
  file_id: '9303'
  file_name: 2021_CurrentBiology_Glanc.pdf
  file_size: 4324371
  relation: main_file
  success: 1
file_date_updated: 2021-04-01T10:53:42Z
has_accepted_license: '1'
intvolume: '        31'
isi: 1
issue: '9'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 1918-1930
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
publication: Current Biology
publication_identifier:
  eissn:
  - 1879-0445
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral
  diffusion in plant cells
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 31
year: '2021'
...
---
_id: '9368'
abstract:
- lang: eng
  text: The quality control system for messenger RNA (mRNA) is fundamental for cellular
    activities in eukaryotes. To elucidate the molecular mechanism of 3'-Phosphoinositide-Dependent
    Protein Kinase1 (PDK1), a master regulator that is essential throughout eukaryotic
    growth and development, we employed a forward genetic approach to screen for suppressors
    of the loss-of-function T-DNA insertion double mutant pdk1.1 pdk1.2 in Arabidopsis
    thaliana. Notably, the severe growth attenuation of pdk1.1 pdk1.2 was rescued
    by sop21 (suppressor of pdk1.1 pdk1.2), which harbours a loss-of-function mutation
    in PELOTA1 (PEL1). PEL1 is a homologue of mammalian PELOTA and yeast (Saccharomyces
    cerevisiae) DOM34p, which each form a heterodimeric complex with the GTPase HBS1
    (HSP70 SUBFAMILY B SUPPRESSOR1, also called SUPERKILLER PROTEIN7, SKI7), a protein
    that is responsible for ribosomal rescue and thereby assures the quality and fidelity
    of mRNA molecules during translation. Genetic analysis further revealed that a
    dysfunctional PEL1-HBS1 complex failed to degrade the T-DNA-disrupted PDK1 transcripts,
    which were truncated but functional, and thus rescued the growth and developmental
    defects of pdk1.1 pdk1.2. Our studies demonstrated the functionality of a homologous
    PELOTA-HBS1 complex and identified its essential regulatory role in plants, providing
    insights into the mechanism of mRNA quality control.
acknowledgement: 'We gratefully acknowledge the Arabidopsis Biological Resource Centre
  (ABRC) for providing T-DNA insertional mutants, and Prof. Remko Offringa for sharing
  published seeds. We thank Yuchuan Liu (Shanghai OE Biotech Co., Ltd) for help with
  proteomics data analysis, Xixi Zhang (IST Austria) for providing the pDONR-P4P1r-mCherry
  plasmid, and Yao Xiao (Technical University of Munich), Alexander Johnson (IST Austria)
  and Hana Semeradova (IST Austria) for helpful discussions. The study was supported
  by National Natural Science Foundation of China (NSFC, 31721001, 91954206, to H.-W.
  X.), “Ten-Thousand Talent Program” (to H.-W. X.) and Collaborative Innovation Center
  of Crop Stress Biology, Henan Province, and Austrian Science Fund (FWF): I 3630-B25
  (to J. F.). S.T. was funded by a European Molecular Biology Organization (EMBO)
  long-term postdoctoral fellowship (ALTF 723-2015).'
article_processing_charge: No
article_type: original
author:
- first_name: W
  full_name: Kong, W
  last_name: Kong
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Q
  full_name: Zhao, Q
  last_name: Zhao
- first_name: DL
  full_name: Lin, DL
  last_name: Lin
- first_name: ZH
  full_name: Xu, ZH
  last_name: Xu
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: HW
  full_name: Xue, HW
  last_name: Xue
citation:
  ama: Kong W, Tan S, Zhao Q, et al. mRNA surveillance complex PELOTA-HBS1 eegulates
    phosphoinositide-sependent protein kinase1 and plant growth. <i>Plant Physiology</i>.
    2021;186(4):2003-2020. doi:<a href="https://doi.org/10.1093/plphys/kiab199">10.1093/plphys/kiab199</a>
  apa: Kong, W., Tan, S., Zhao, Q., Lin, D., Xu, Z., Friml, J., &#38; Xue, H. (2021).
    mRNA surveillance complex PELOTA-HBS1 eegulates phosphoinositide-sependent protein
    kinase1 and plant growth. <i>Plant Physiology</i>. American Society of Plant Biologists.
    <a href="https://doi.org/10.1093/plphys/kiab199">https://doi.org/10.1093/plphys/kiab199</a>
  chicago: Kong, W, Shutang Tan, Q Zhao, DL Lin, ZH Xu, Jiří Friml, and HW Xue. “MRNA
    Surveillance Complex PELOTA-HBS1 Eegulates Phosphoinositide-Sependent Protein
    Kinase1 and Plant Growth.” <i>Plant Physiology</i>. American Society of Plant
    Biologists, 2021. <a href="https://doi.org/10.1093/plphys/kiab199">https://doi.org/10.1093/plphys/kiab199</a>.
  ieee: W. Kong <i>et al.</i>, “mRNA surveillance complex PELOTA-HBS1 eegulates phosphoinositide-sependent
    protein kinase1 and plant growth,” <i>Plant Physiology</i>, vol. 186, no. 4. American
    Society of Plant Biologists, pp. 2003–2020, 2021.
  ista: Kong W, Tan S, Zhao Q, Lin D, Xu Z, Friml J, Xue H. 2021. mRNA surveillance
    complex PELOTA-HBS1 eegulates phosphoinositide-sependent protein kinase1 and plant
    growth. Plant Physiology. 186(4), 2003–2020.
  mla: Kong, W., et al. “MRNA Surveillance Complex PELOTA-HBS1 Eegulates Phosphoinositide-Sependent
    Protein Kinase1 and Plant Growth.” <i>Plant Physiology</i>, vol. 186, no. 4, American
    Society of Plant Biologists, 2021, pp. 2003–20, doi:<a href="https://doi.org/10.1093/plphys/kiab199">10.1093/plphys/kiab199</a>.
  short: W. Kong, S. Tan, Q. Zhao, D. Lin, Z. Xu, J. Friml, H. Xue, Plant Physiology
    186 (2021) 2003–2020.
date_created: 2021-05-03T13:28:20Z
date_published: 2021-04-30T00:00:00Z
date_updated: 2023-09-05T12:20:27Z
day: '30'
department:
- _id: JiFr
doi: 10.1093/plphys/kiab199
external_id:
  isi:
  - '000703922000025'
  pmid:
  - '33930167'
intvolume: '       186'
isi: 1
issue: '4'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1093/plphys/kiab199
month: '04'
oa: 1
oa_version: Published Version
page: 2003-2020
pmid: 1
project:
- _id: 256FEF10-B435-11E9-9278-68D0E5697425
  grant_number: 723-2015
  name: Long Term Fellowship
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
publication: Plant Physiology
publication_identifier:
  eissn:
  - 1532-2548
  issn:
  - 0032-0889
publication_status: published
publisher: American Society of Plant Biologists
quality_controlled: '1'
status: public
title: mRNA surveillance complex PELOTA-HBS1 eegulates phosphoinositide-sependent
  protein kinase1 and plant growth
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 186
year: '2021'
...
---
_id: '8721'
abstract:
- lang: eng
  text: Spontaneously arising channels that transport the phytohormone auxin provide
    positional cues for self-organizing aspects of plant development such as flexible
    vasculature regeneration or its patterning during leaf venation. The auxin canalization
    hypothesis proposes a feedback between auxin signaling and transport as the underlying
    mechanism, but molecular players await discovery. We identified part of the machinery
    that routes auxin transport. The auxin-regulated receptor CAMEL (Canalization-related
    Auxin-regulated Malectin-type RLK) together with CANAR (Canalization-related Receptor-like
    kinase) interact with and phosphorylate PIN auxin transporters. camel and canar
    mutants are impaired in PIN1 subcellular trafficking and auxin-mediated PIN polarization,
    which macroscopically manifests as defects in leaf venation and vasculature regeneration
    after wounding. The CAMEL-CANAR receptor complex is part of the auxin feedback
    that coordinates polarization of individual cells during auxin canalization.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
acknowledgement: 'We acknowledge M. Glanc and Y. Zhang for providing entryclones;
  Vienna Biocenter Core Facilities (VBCF) for recombinantprotein production and purification;
  Vienna Biocenter Massspectrometry Facility, Bioimaging, and Life Science Facilities
  at IST Austria and Proteomics Core Facility CEITEC for a great assistance.Funding:This
  project received funding from the European Research Council (ERC) under the European
  Union’s Horizon 2020 research and innovation program (grant agreement 742985) and
  Austrian Science Fund (FWF): I 3630-B25 to J.F.and by grants from the Austrian Academy
  of Science through the Gregor Mendel Institute (Y.B.) and the Austrian Agency for
  International Cooperation in Education and Research (D.D.); the Netherlands Organization
  for Scientific Research (NWO; VIDI-864.13.001) (W.S.); the Research Foundation–Flanders
  (FWO;Odysseus II G0D0515N) and a European Research Council grant (ERC; StG TORPEDO;
  714055) to B.D.R., B.Y., and E.M.; and the Hertha Firnberg Programme postdoctoral
  fellowship (T-947) from the FWF Austrian Science Fund to E.S.-L.; J.H. is the recipient
  of a DOC Fellowship of the Austrian Academy of Sciences at IST Austria.'
article_processing_charge: No
article_type: original
author:
- first_name: Jakub
  full_name: Hajny, Jakub
  id: 4800CC20-F248-11E8-B48F-1D18A9856A87
  last_name: Hajny
  orcid: 0000-0003-2140-7195
- first_name: Tomas
  full_name: Prat, Tomas
  id: 3DA3BFEE-F248-11E8-B48F-1D18A9856A87
  last_name: Prat
- first_name: N
  full_name: Rydza, N
  last_name: Rydza
- first_name: Lesia
  full_name: Rodriguez Solovey, Lesia
  id: 3922B506-F248-11E8-B48F-1D18A9856A87
  last_name: Rodriguez Solovey
  orcid: 0000-0002-7244-7237
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Inge
  full_name: Verstraeten, Inge
  id: 362BF7FE-F248-11E8-B48F-1D18A9856A87
  last_name: Verstraeten
  orcid: 0000-0001-7241-2328
- first_name: David
  full_name: Domjan, David
  id: C684CD7A-257E-11EA-9B6F-D8588B4F947F
  last_name: Domjan
  orcid: 0000-0003-2267-106X
- first_name: E
  full_name: Mazur, E
  last_name: Mazur
- first_name: E
  full_name: Smakowska-Luzan, E
  last_name: Smakowska-Luzan
- first_name: W
  full_name: Smet, W
  last_name: Smet
- first_name: E
  full_name: Mor, E
  last_name: Mor
- first_name: J
  full_name: Nolf, J
  last_name: Nolf
- first_name: B
  full_name: Yang, B
  last_name: Yang
- first_name: W
  full_name: Grunewald, W
  last_name: Grunewald
- first_name: Gergely
  full_name: Molnar, Gergely
  id: 34F1AF46-F248-11E8-B48F-1D18A9856A87
  last_name: Molnar
- first_name: Y
  full_name: Belkhadir, Y
  last_name: Belkhadir
- first_name: B
  full_name: De Rybel, B
  last_name: De Rybel
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Hajny J, Prat T, Rydza N, et al. Receptor kinase module targets PIN-dependent
    auxin transport during canalization. <i>Science</i>. 2020;370(6516):550-557. doi:<a
    href="https://doi.org/10.1126/science.aba3178">10.1126/science.aba3178</a>
  apa: Hajny, J., Prat, T., Rydza, N., Rodriguez Solovey, L., Tan, S., Verstraeten,
    I., … Friml, J. (2020). Receptor kinase module targets PIN-dependent auxin transport
    during canalization. <i>Science</i>. American Association for the Advancement
    of Science. <a href="https://doi.org/10.1126/science.aba3178">https://doi.org/10.1126/science.aba3178</a>
  chicago: Hajny, Jakub, Tomas Prat, N Rydza, Lesia Rodriguez Solovey, Shutang Tan,
    Inge Verstraeten, David Domjan, et al. “Receptor Kinase Module Targets PIN-Dependent
    Auxin Transport during Canalization.” <i>Science</i>. American Association for
    the Advancement of Science, 2020. <a href="https://doi.org/10.1126/science.aba3178">https://doi.org/10.1126/science.aba3178</a>.
  ieee: J. Hajny <i>et al.</i>, “Receptor kinase module targets PIN-dependent auxin
    transport during canalization,” <i>Science</i>, vol. 370, no. 6516. American Association
    for the Advancement of Science, pp. 550–557, 2020.
  ista: Hajny J, Prat T, Rydza N, Rodriguez Solovey L, Tan S, Verstraeten I, Domjan
    D, Mazur E, Smakowska-Luzan E, Smet W, Mor E, Nolf J, Yang B, Grunewald W, Molnar
    G, Belkhadir Y, De Rybel B, Friml J. 2020. Receptor kinase module targets PIN-dependent
    auxin transport during canalization. Science. 370(6516), 550–557.
  mla: Hajny, Jakub, et al. “Receptor Kinase Module Targets PIN-Dependent Auxin Transport
    during Canalization.” <i>Science</i>, vol. 370, no. 6516, American Association
    for the Advancement of Science, 2020, pp. 550–57, doi:<a href="https://doi.org/10.1126/science.aba3178">10.1126/science.aba3178</a>.
  short: J. Hajny, T. Prat, N. Rydza, L. Rodriguez Solovey, S. Tan, I. Verstraeten,
    D. Domjan, E. Mazur, E. Smakowska-Luzan, W. Smet, E. Mor, J. Nolf, B. Yang, W.
    Grunewald, G. Molnar, Y. Belkhadir, B. De Rybel, J. Friml, Science 370 (2020)
    550–557.
date_created: 2020-11-02T10:04:46Z
date_published: 2020-10-30T00:00:00Z
date_updated: 2023-09-05T12:02:35Z
day: '30'
department:
- _id: JiFr
doi: 10.1126/science.aba3178
ec_funded: 1
external_id:
  isi:
  - '000583031800041'
  pmid:
  - '33122378'
intvolume: '       370'
isi: 1
issue: '6516'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://europepmc.org/article/MED/33122378#free-full-text
month: '10'
oa: 1
oa_version: Published Version
page: 550-557
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
- _id: 2699E3D2-B435-11E9-9278-68D0E5697425
  grant_number: '25239'
  name: Cell surface receptor complexes for PIN polarity and auxin-mediated development
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/molecular-compass-for-cell-orientation/
scopus_import: '1'
status: public
title: Receptor kinase module targets PIN-dependent auxin transport during canalization
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 370
year: '2020'
...
---
_id: '8943'
abstract:
- lang: eng
  text: The widely used non-steroidal anti-inflammatory drugs (NSAIDs) are derivatives
    of the phytohormone salicylic acid (SA). SA is well known to regulate plant immunity
    and development, whereas there have been few reports focusing on the effects of
    NSAIDs in plants. Our studies here reveal that NSAIDs exhibit largely overlapping
    physiological activities to SA in the model plant Arabidopsis. NSAID treatments
    lead to shorter and agravitropic primary roots and inhibited lateral root organogenesis.
    Notably, in addition to the SA-like action, which in roots involves binding to
    the protein phosphatase 2A (PP2A), NSAIDs also exhibit PP2A-independent effects.
    Cell biological and biochemical analyses reveal that many NSAIDs bind directly
    to and inhibit the chaperone activity of TWISTED DWARF1, thereby regulating actin
    cytoskeleton dynamics and subsequent endosomal trafficking. Our findings uncover
    an unexpected bioactivity of human pharmaceuticals in plants and provide insights
    into the molecular mechanism underlying the cellular action of this class of anti-inflammatory
    compounds.
acknowledged_ssus:
- _id: LifeSc
- _id: Bio
acknowledgement: "We thank Drs. Sebastian Bednarek (University of Wisconsin-Madison),
  Niko Geldner (University of Lausanne), and Karin Schumacher (Heidelberg University)
  for kindly sharing published Arabidopsis lines; Dr. Satoshi Naramoto for the pPIN2::PIN2-GFP;
  pVHA-a1::VHA-a1-mRFP reporter; the staff at the Life Science Facility and Bioimaging
  Facility, Monika Hrtyan, and Dorota Jaworska at IST Austria for technical support;
  and Drs. Su Tang (Texas A&M University),\r\nMelinda Abas (BOKU), Eva Benkova´ (IST
  Austria), Christian Luschnig (BOKU), Bartel Vanholme (Gent University), and the
  Friml group for valuable discussions. The research leading to these findings was
  funded by the European Union’s Horizon 2020 program (ERC grant agreement no. 742985,
  to J.F.), the People Programme (Marie Curie Actions) of the European Union’s Seventh
  Framework Programme (FP7/2007-2013) under REA grant agreement no.\r\n291734, the
  Swiss National Funds (31003A_165877, to M.G.), the Ministry of Education, Youth,
  and Sports of the Czech Republic (project no. CZ.02.1.01/0.0/0.0/16_019/0000738,
  EU Operational Programme ‘‘Research, development and education and Centre for Plant
  Experimental Biology’’), and the EU Operational Programme Prague - Competitiveness
  (project no. CZ.2.16/3.1.00/21519). S.T. was funded by a European Molecular Biology
  Organization (EMBO) long-term postdoctoral fellowship (ALTF 723-2015). X.Z. was
  partly supported by a PhD scholarship from the China Scholarship Council."
article_number: '108463'
article_processing_charge: Yes
article_type: original
author:
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Martin
  full_name: Di Donato, Martin
  last_name: Di Donato
- first_name: Matous
  full_name: Glanc, Matous
  id: 1AE1EA24-02D0-11E9-9BAA-DAF4881429F2
  last_name: Glanc
  orcid: 0000-0003-0619-7783
- first_name: Xixi
  full_name: Zhang, Xixi
  id: 61A66458-47E9-11EA-85BA-8AEAAF14E49A
  last_name: Zhang
  orcid: 0000-0001-7048-4627
- first_name: Petr
  full_name: Klíma, Petr
  last_name: Klíma
- first_name: Jie
  full_name: Liu, Jie
  last_name: Liu
- first_name: Aurélien
  full_name: Bailly, Aurélien
  last_name: Bailly
- first_name: Noel
  full_name: Ferro, Noel
  last_name: Ferro
- first_name: Jan
  full_name: Petrášek, Jan
  last_name: Petrášek
- first_name: Markus
  full_name: Geisler, Markus
  last_name: Geisler
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Tan S, Di Donato M, Glanc M, et al. Non-steroidal anti-inflammatory drugs target
    TWISTED DWARF1-regulated actin dynamics and auxin transport-mediated plant development.
    <i>Cell Reports</i>. 2020;33(9). doi:<a href="https://doi.org/10.1016/j.celrep.2020.108463">10.1016/j.celrep.2020.108463</a>
  apa: Tan, S., Di Donato, M., Glanc, M., Zhang, X., Klíma, P., Liu, J., … Friml,
    J. (2020). Non-steroidal anti-inflammatory drugs target TWISTED DWARF1-regulated
    actin dynamics and auxin transport-mediated plant development. <i>Cell Reports</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.celrep.2020.108463">https://doi.org/10.1016/j.celrep.2020.108463</a>
  chicago: Tan, Shutang, Martin Di Donato, Matous Glanc, Xixi Zhang, Petr Klíma, Jie
    Liu, Aurélien Bailly, et al. “Non-Steroidal Anti-Inflammatory Drugs Target TWISTED
    DWARF1-Regulated Actin Dynamics and Auxin Transport-Mediated Plant Development.”
    <i>Cell Reports</i>. Elsevier, 2020. <a href="https://doi.org/10.1016/j.celrep.2020.108463">https://doi.org/10.1016/j.celrep.2020.108463</a>.
  ieee: S. Tan <i>et al.</i>, “Non-steroidal anti-inflammatory drugs target TWISTED
    DWARF1-regulated actin dynamics and auxin transport-mediated plant development,”
    <i>Cell Reports</i>, vol. 33, no. 9. Elsevier, 2020.
  ista: Tan S, Di Donato M, Glanc M, Zhang X, Klíma P, Liu J, Bailly A, Ferro N, Petrášek
    J, Geisler M, Friml J. 2020. Non-steroidal anti-inflammatory drugs target TWISTED
    DWARF1-regulated actin dynamics and auxin transport-mediated plant development.
    Cell Reports. 33(9), 108463.
  mla: Tan, Shutang, et al. “Non-Steroidal Anti-Inflammatory Drugs Target TWISTED
    DWARF1-Regulated Actin Dynamics and Auxin Transport-Mediated Plant Development.”
    <i>Cell Reports</i>, vol. 33, no. 9, 108463, Elsevier, 2020, doi:<a href="https://doi.org/10.1016/j.celrep.2020.108463">10.1016/j.celrep.2020.108463</a>.
  short: S. Tan, M. Di Donato, M. Glanc, X. Zhang, P. Klíma, J. Liu, A. Bailly, N.
    Ferro, J. Petrášek, M. Geisler, J. Friml, Cell Reports 33 (2020).
date_created: 2020-12-13T23:01:21Z
date_published: 2020-12-01T00:00:00Z
date_updated: 2023-11-16T13:03:31Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1016/j.celrep.2020.108463
ec_funded: 1
external_id:
  isi:
  - '000595658100018'
  pmid:
  - '33264621'
file:
- access_level: open_access
  checksum: ed18cba0fb48ed2e789381a54cc21904
  content_type: application/pdf
  creator: dernst
  date_created: 2020-12-14T07:33:39Z
  date_updated: 2020-12-14T07:33:39Z
  file_id: '8948'
  file_name: 2020_CellReports_Tan.pdf
  file_size: 8056434
  relation: main_file
  success: 1
file_date_updated: 2020-12-14T07:33:39Z
has_accepted_license: '1'
intvolume: '        33'
isi: 1
issue: '9'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
- _id: 256FEF10-B435-11E9-9278-68D0E5697425
  grant_number: 723-2015
  name: Long Term Fellowship
publication: Cell Reports
publication_identifier:
  eissn:
  - '22111247'
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/plants-on-aspirin/
scopus_import: '1'
status: public
title: Non-steroidal anti-inflammatory drugs target TWISTED DWARF1-regulated actin
  dynamics and auxin transport-mediated plant development
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 33
year: '2020'
...
---
_id: '7204'
abstract:
- lang: eng
  text: Plant root architecture dynamically adapts to various environmental conditions,
    such as salt‐containing soil. The phytohormone abscisic acid (ABA) is involved
    among others also in these developmental adaptations, but the underlying molecular
    mechanism remains elusive. Here, a novel branch of the ABA signaling pathway in
    Arabidopsis involving PYR/PYL/RCAR (abbreviated as PYLs) receptor‐protein phosphatase
    2A (PP2A) complex that acts in parallel to the canonical PYLs‐protein phosphatase
    2C (PP2C) mechanism is identified. The PYLs‐PP2A signaling modulates root gravitropism
    and lateral root formation through regulating phytohormone auxin transport. In
    optimal conditions, PYLs ABA receptor interacts with the catalytic subunits of
    PP2A, increasing their phosphatase activity and thus counteracting PINOID (PID)
    kinase‐mediated phosphorylation of PIN‐FORMED (PIN) auxin transporters. By contrast,
    in salt and osmotic stress conditions, ABA binds to PYLs, inhibiting the PP2A
    activity, which leads to increased PIN phosphorylation and consequently modulated
    directional auxin transport leading to adapted root architecture. This work reveals
    an adaptive mechanism that may flexibly adjust plant root growth to withstand
    saline and osmotic stresses. It occurs via the cross‐talk between the stress hormone
    ABA and the versatile developmental regulator auxin.
article_number: '1901455'
article_processing_charge: No
article_type: original
author:
- first_name: Yang
  full_name: Li, Yang
  last_name: Li
- first_name: Yaping
  full_name: Wang, Yaping
  last_name: Wang
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Zhen
  full_name: Li, Zhen
  last_name: Li
- first_name: Zhi
  full_name: Yuan, Zhi
  last_name: Yuan
- first_name: Matous
  full_name: Glanc, Matous
  id: 1AE1EA24-02D0-11E9-9BAA-DAF4881429F2
  last_name: Glanc
  orcid: 0000-0003-0619-7783
- first_name: David
  full_name: Domjan, David
  id: C684CD7A-257E-11EA-9B6F-D8588B4F947F
  last_name: Domjan
  orcid: 0000-0003-2267-106X
- first_name: Kai
  full_name: Wang, Kai
  last_name: Wang
- first_name: Wei
  full_name: Xuan, Wei
  last_name: Xuan
- first_name: Yan
  full_name: Guo, Yan
  last_name: Guo
- first_name: Zhizhong
  full_name: Gong, Zhizhong
  last_name: Gong
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Jing
  full_name: Zhang, Jing
  last_name: Zhang
citation:
  ama: Li Y, Wang Y, Tan S, et al. Root growth adaptation is mediated by PYLs ABA
    receptor-PP2A protein phosphatase complex. <i>Advanced Science</i>. 2020;7(3).
    doi:<a href="https://doi.org/10.1002/advs.201901455">10.1002/advs.201901455</a>
  apa: Li, Y., Wang, Y., Tan, S., Li, Z., Yuan, Z., Glanc, M., … Zhang, J. (2020).
    Root growth adaptation is mediated by PYLs ABA receptor-PP2A protein phosphatase
    complex. <i>Advanced Science</i>. Wiley. <a href="https://doi.org/10.1002/advs.201901455">https://doi.org/10.1002/advs.201901455</a>
  chicago: Li, Yang, Yaping Wang, Shutang Tan, Zhen Li, Zhi Yuan, Matous Glanc, David
    Domjan, et al. “Root Growth Adaptation Is Mediated by PYLs ABA Receptor-PP2A Protein
    Phosphatase Complex.” <i>Advanced Science</i>. Wiley, 2020. <a href="https://doi.org/10.1002/advs.201901455">https://doi.org/10.1002/advs.201901455</a>.
  ieee: Y. Li <i>et al.</i>, “Root growth adaptation is mediated by PYLs ABA receptor-PP2A
    protein phosphatase complex,” <i>Advanced Science</i>, vol. 7, no. 3. Wiley, 2020.
  ista: Li Y, Wang Y, Tan S, Li Z, Yuan Z, Glanc M, Domjan D, Wang K, Xuan W, Guo
    Y, Gong Z, Friml J, Zhang J. 2020. Root growth adaptation is mediated by PYLs
    ABA receptor-PP2A protein phosphatase complex. Advanced Science. 7(3), 1901455.
  mla: Li, Yang, et al. “Root Growth Adaptation Is Mediated by PYLs ABA Receptor-PP2A
    Protein Phosphatase Complex.” <i>Advanced Science</i>, vol. 7, no. 3, 1901455,
    Wiley, 2020, doi:<a href="https://doi.org/10.1002/advs.201901455">10.1002/advs.201901455</a>.
  short: Y. Li, Y. Wang, S. Tan, Z. Li, Z. Yuan, M. Glanc, D. Domjan, K. Wang, W.
    Xuan, Y. Guo, Z. Gong, J. Friml, J. Zhang, Advanced Science 7 (2020).
date_created: 2019-12-22T23:00:43Z
date_published: 2020-02-05T00:00:00Z
date_updated: 2023-08-17T14:13:17Z
day: '05'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1002/advs.201901455
external_id:
  isi:
  - '000501912800001'
  pmid:
  - '32042554'
file:
- access_level: open_access
  checksum: 016eeab5860860af038e2da95ffe75c3
  content_type: application/pdf
  creator: dernst
  date_created: 2020-02-24T14:29:54Z
  date_updated: 2020-07-14T12:47:53Z
  file_id: '7519'
  file_name: 2020_AdvScience_Li.pdf
  file_size: 3586924
  relation: main_file
file_date_updated: 2020-07-14T12:47:53Z
has_accepted_license: '1'
intvolume: '         7'
isi: 1
issue: '3'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
publication: Advanced Science
publication_identifier:
  eissn:
  - 2198-3844
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Root growth adaptation is mediated by PYLs ABA receptor-PP2A protein phosphatase
  complex
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 7
year: '2020'
...
---
_id: '7427'
abstract:
- lang: eng
  text: Plants, like other multicellular organisms, survive through a delicate balance
    between growth and defense against pathogens. Salicylic acid (SA) is a major defense
    signal in plants, and the perception mechanism as well as downstream signaling
    activating the immune response are known. Here, we identify a parallel SA signaling
    that mediates growth attenuation. SA directly binds to A subunits of protein phosphatase
    2A (PP2A), inhibiting activity of this complex. Among PP2A targets, the PIN2 auxin
    transporter is hyperphosphorylated in response to SA, leading to changed activity
    of this important growth regulator. Accordingly, auxin transport and auxin-mediated
    root development, including growth, gravitropic response, and lateral root organogenesis,
    are inhibited. This study reveals how SA, besides activating immunity, concomitantly
    attenuates growth through crosstalk with the auxin distribution network. Further
    analysis of this dual role of SA and characterization of additional SA-regulated
    PP2A targets will provide further insights into mechanisms maintaining a balance
    between growth and defense.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
acknowledgement: "We thank Shigeyuki Betsuyaku (University of Tsukuba), Alison Delong
  (Brown University), Xinnian Dong (Duke University), Dolf Weijers (Wageningen University),
  Yuelin Zhang (UBC), and Martine Pastuglia (Institut Jean-Pierre Bourgin) for sharing
  published materials; Jana Riederer for help with cantharidin physiological analysis;
  David Domjan for help with cloning pET28a-PIN2HL; Qing Lu for help with DARTS; Hana
  Kozubı´kova´ for technical support on SA derivative synthesis; Zuzana Vondra´ kova´
  for technical support with tobacco cells; Lucia Strader (Washington University),
  Bert De Rybel (Ghent University), Bartel Vanholme (Ghent University), and Lukas
  Mach (BOKU) for helpful discussions; and bioimaging and life science facilities
  of IST Austria for continuous support. We gratefully acknowledge the Nottingham
  Arabidopsis Stock Center (NASC) for providing T-DNA insertional mutants. The DSC
  and SPR instruments were provided by the EQ-BOKU VIBT GmbH and the BOKU Core Facility
  for Biomolecular and Cellular Analysis, with help of Irene Schaffner. The research
  leading to these results has received funding from the European Union’s Horizon
  2020 program (ERC grant agreement no. 742985 to J.F.) and the People Programme (Marie
  Curie Actions) of the European Union’s Seventh Framework Programme (FP7/2007-2013)
  under REA grant agreement no. 291734. S.T. was supported by a European Molecular
  Biology Organization (EMBO) long-term postdoctoral fellowship (ALTF 723-2015). O.N.
  was supported by the Ministry of Education, Youth and Sports of the Czech Republic
  (European Regional Development Fund-Project ‘‘Centre for Experimental Plant Biology’’
  no. CZ.02.1.01/0.0/0.0/16_019/0000738). J. Pospısil was supported by European Regional
  Development Fund Project ‘‘Centre for Experimental Plant Biology’’\r\n(no. CZ.02.1.01/0.0/0.0/16_019/0000738).
  J. Petrasek was supported by EU Operational Programme Prague-Competitiveness (no.
  CZ.2.16/3.1.00/21519). "
article_processing_charge: No
article_type: original
author:
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Melinda F
  full_name: Abas, Melinda F
  id: 3CFB3B1C-F248-11E8-B48F-1D18A9856A87
  last_name: Abas
- first_name: Inge
  full_name: Verstraeten, Inge
  id: 362BF7FE-F248-11E8-B48F-1D18A9856A87
  last_name: Verstraeten
  orcid: 0000-0001-7241-2328
- first_name: Matous
  full_name: Glanc, Matous
  id: 1AE1EA24-02D0-11E9-9BAA-DAF4881429F2
  last_name: Glanc
  orcid: 0000-0003-0619-7783
- first_name: Gergely
  full_name: Molnar, Gergely
  id: 34F1AF46-F248-11E8-B48F-1D18A9856A87
  last_name: Molnar
- first_name: Jakub
  full_name: Hajny, Jakub
  id: 4800CC20-F248-11E8-B48F-1D18A9856A87
  last_name: Hajny
  orcid: 0000-0003-2140-7195
- first_name: Pavel
  full_name: Lasák, Pavel
  last_name: Lasák
- first_name: Ivan
  full_name: Petřík, Ivan
  last_name: Petřík
- first_name: Eugenia
  full_name: Russinova, Eugenia
  last_name: Russinova
- first_name: Jan
  full_name: Petrášek, Jan
  last_name: Petrášek
- first_name: Ondřej
  full_name: Novák, Ondřej
  last_name: Novák
- first_name: Jiří
  full_name: Pospíšil, Jiří
  last_name: Pospíšil
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Tan S, Abas MF, Verstraeten I, et al. Salicylic acid targets protein phosphatase
    2A to attenuate growth in plants. <i>Current Biology</i>. 2020;30(3):381-395.e8.
    doi:<a href="https://doi.org/10.1016/j.cub.2019.11.058">10.1016/j.cub.2019.11.058</a>
  apa: Tan, S., Abas, M. F., Verstraeten, I., Glanc, M., Molnar, G., Hajny, J., …
    Friml, J. (2020). Salicylic acid targets protein phosphatase 2A to attenuate growth
    in plants. <i>Current Biology</i>. Cell Press. <a href="https://doi.org/10.1016/j.cub.2019.11.058">https://doi.org/10.1016/j.cub.2019.11.058</a>
  chicago: Tan, Shutang, Melinda F Abas, Inge Verstraeten, Matous Glanc, Gergely Molnar,
    Jakub Hajny, Pavel Lasák, et al. “Salicylic Acid Targets Protein Phosphatase 2A
    to Attenuate Growth in Plants.” <i>Current Biology</i>. Cell Press, 2020. <a href="https://doi.org/10.1016/j.cub.2019.11.058">https://doi.org/10.1016/j.cub.2019.11.058</a>.
  ieee: S. Tan <i>et al.</i>, “Salicylic acid targets protein phosphatase 2A to attenuate
    growth in plants,” <i>Current Biology</i>, vol. 30, no. 3. Cell Press, p. 381–395.e8,
    2020.
  ista: Tan S, Abas MF, Verstraeten I, Glanc M, Molnar G, Hajny J, Lasák P, Petřík
    I, Russinova E, Petrášek J, Novák O, Pospíšil J, Friml J. 2020. Salicylic acid
    targets protein phosphatase 2A to attenuate growth in plants. Current Biology.
    30(3), 381–395.e8.
  mla: Tan, Shutang, et al. “Salicylic Acid Targets Protein Phosphatase 2A to Attenuate
    Growth in Plants.” <i>Current Biology</i>, vol. 30, no. 3, Cell Press, 2020, p.
    381–395.e8, doi:<a href="https://doi.org/10.1016/j.cub.2019.11.058">10.1016/j.cub.2019.11.058</a>.
  short: S. Tan, M.F. Abas, I. Verstraeten, M. Glanc, G. Molnar, J. Hajny, P. Lasák,
    I. Petřík, E. Russinova, J. Petrášek, O. Novák, J. Pospíšil, J. Friml, Current
    Biology 30 (2020) 381–395.e8.
date_created: 2020-02-02T23:01:00Z
date_published: 2020-02-03T00:00:00Z
date_updated: 2024-03-25T23:30:20Z
day: '03'
ddc:
- '580'
department:
- _id: JiFr
- _id: EvBe
doi: 10.1016/j.cub.2019.11.058
ec_funded: 1
external_id:
  isi:
  - '000511287900018'
  pmid:
  - '31956021'
file:
- access_level: open_access
  checksum: 16f7d51fe28f91c21e4896a2028df40b
  content_type: application/pdf
  creator: dernst
  date_created: 2020-09-22T09:51:28Z
  date_updated: 2020-09-22T09:51:28Z
  file_id: '8555'
  file_name: 2020_CurrentBiology_Tan.pdf
  file_size: 5360135
  relation: main_file
  success: 1
file_date_updated: 2020-09-22T09:51:28Z
has_accepted_license: '1'
intvolume: '        30'
isi: 1
issue: '3'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 381-395.e8
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
- _id: 256FEF10-B435-11E9-9278-68D0E5697425
  grant_number: 723-2015
  name: Long Term Fellowship
publication: Current Biology
publication_identifier:
  issn:
  - '09609822'
publication_status: published
publisher: Cell Press
quality_controlled: '1'
related_material:
  record:
  - id: '8822'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Salicylic acid targets protein phosphatase 2A to attenuate growth in plants
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 30
year: '2020'
...
---
_id: '7490'
abstract:
- lang: eng
  text: In plants, clathrin mediated endocytosis (CME) represents the major route
    for cargo internalisation from the cell surface. It has been assumed to operate
    in an evolutionary conserved manner as in yeast and animals. Here we report characterisation
    of ultrastructure, dynamics and mechanisms of plant CME as allowed by our advancement
    in electron microscopy and quantitative live imaging techniques. Arabidopsis CME
    appears to follow the constant curvature model and the bona fide CME population
    generates vesicles of a predominantly hexagonal-basket type; larger and with faster
    kinetics than in other models. Contrary to the existing paradigm, actin is dispensable
    for CME events at the plasma membrane but plays a unique role in collecting endocytic
    vesicles, sorting of internalised cargos and directional endosome movement that
    itself actively promote CME events. Internalized vesicles display a strongly delayed
    and sequential uncoating. These unique features highlight the independent evolution
    of the plant CME mechanism during the autonomous rise of multicellularity in eukaryotes.
acknowledged_ssus:
- _id: LifeSc
- _id: Bio
- _id: EM-Fac
article_number: e52067
article_processing_charge: No
article_type: original
author:
- first_name: Madhumitha
  full_name: Narasimhan, Madhumitha
  id: 44BF24D0-F248-11E8-B48F-1D18A9856A87
  last_name: Narasimhan
  orcid: 0000-0002-8600-0671
- first_name: Alexander J
  full_name: Johnson, Alexander J
  id: 46A62C3A-F248-11E8-B48F-1D18A9856A87
  last_name: Johnson
  orcid: 0000-0002-2739-8843
- first_name: Roshan
  full_name: Prizak, Roshan
  id: 4456104E-F248-11E8-B48F-1D18A9856A87
  last_name: Prizak
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Barbara E
  full_name: Casillas Perez, Barbara E
  id: 351ED2AA-F248-11E8-B48F-1D18A9856A87
  last_name: Casillas Perez
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Narasimhan M, Johnson AJ, Prizak R, et al. Evolutionarily unique mechanistic
    framework of clathrin-mediated endocytosis in plants. <i>eLife</i>. 2020;9. doi:<a
    href="https://doi.org/10.7554/eLife.52067">10.7554/eLife.52067</a>
  apa: Narasimhan, M., Johnson, A. J., Prizak, R., Kaufmann, W., Tan, S., Casillas
    Perez, B. E., &#38; Friml, J. (2020). Evolutionarily unique mechanistic framework
    of clathrin-mediated endocytosis in plants. <i>ELife</i>. eLife Sciences Publications.
    <a href="https://doi.org/10.7554/eLife.52067">https://doi.org/10.7554/eLife.52067</a>
  chicago: Narasimhan, Madhumitha, Alexander J Johnson, Roshan Prizak, Walter Kaufmann,
    Shutang Tan, Barbara E Casillas Perez, and Jiří Friml. “Evolutionarily Unique
    Mechanistic Framework of Clathrin-Mediated Endocytosis in Plants.” <i>ELife</i>.
    eLife Sciences Publications, 2020. <a href="https://doi.org/10.7554/eLife.52067">https://doi.org/10.7554/eLife.52067</a>.
  ieee: M. Narasimhan <i>et al.</i>, “Evolutionarily unique mechanistic framework
    of clathrin-mediated endocytosis in plants,” <i>eLife</i>, vol. 9. eLife Sciences
    Publications, 2020.
  ista: Narasimhan M, Johnson AJ, Prizak R, Kaufmann W, Tan S, Casillas Perez BE,
    Friml J. 2020. Evolutionarily unique mechanistic framework of clathrin-mediated
    endocytosis in plants. eLife. 9, e52067.
  mla: Narasimhan, Madhumitha, et al. “Evolutionarily Unique Mechanistic Framework
    of Clathrin-Mediated Endocytosis in Plants.” <i>ELife</i>, vol. 9, e52067, eLife
    Sciences Publications, 2020, doi:<a href="https://doi.org/10.7554/eLife.52067">10.7554/eLife.52067</a>.
  short: M. Narasimhan, A.J. Johnson, R. Prizak, W. Kaufmann, S. Tan, B.E. Casillas
    Perez, J. Friml, ELife 9 (2020).
date_created: 2020-02-16T23:00:50Z
date_published: 2020-01-23T00:00:00Z
date_updated: 2023-08-18T06:33:07Z
day: '23'
ddc:
- '570'
- '580'
department:
- _id: JiFr
- _id: GaTk
- _id: EM-Fac
- _id: SyCr
doi: 10.7554/eLife.52067
ec_funded: 1
external_id:
  isi:
  - '000514104100001'
  pmid:
  - '31971511'
file:
- access_level: open_access
  checksum: 2052daa4be5019534f3a42f200a09f32
  content_type: application/pdf
  creator: dernst
  date_created: 2020-02-18T07:21:16Z
  date_updated: 2020-07-14T12:47:59Z
  file_id: '7494'
  file_name: 2020_eLife_Narasimhan.pdf
  file_size: 7247468
  relation: main_file
file_date_updated: 2020-07-14T12:47:59Z
has_accepted_license: '1'
intvolume: '         9'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
publication: eLife
publication_identifier:
  eissn:
  - 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis
  in plants
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 9
year: '2020'
...
---
_id: '7600'
abstract:
- lang: eng
  text: Directional intercellular transport of the phytohormone auxin mediated by
    PIN FORMED (PIN) efflux carriers plays essential roles in both coordinating patterning
    processes and integrating multiple external cues by rapidly redirecting auxin
    fluxes. Multilevel regulations of PIN activity under internal and external cues
    are complicated; however, the underlying molecular mechanism remains elusive.
    Here we demonstrate that 3’-Phosphoinositide-Dependent Protein Kinase1 (PDK1),
    which is conserved in plants and mammals, functions as a molecular hub integrating
    the upstream lipid signalling and the downstream substrate activity through phosphorylation.
    Genetic analysis uncovers that loss-of-function Arabidopsis mutant pdk1.1 pdk1.2
    exhibits a plethora of abnormalities in organogenesis and growth, due to the defective
    PIN-dependent auxin transport. Further cellular and biochemical analyses reveal
    that PDK1 phosphorylates D6 Protein Kinase to facilitate its activity towards
    PIN proteins. Our studies establish a lipid-dependent phosphorylation cascade
    connecting membrane composition-based cellular signalling with plant growth and
    patterning by regulating morphogenetic auxin fluxes.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
article_processing_charge: No
article_type: original
author:
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Xixi
  full_name: Zhang, Xixi
  id: 61A66458-47E9-11EA-85BA-8AEAAF14E49A
  last_name: Zhang
  orcid: 0000-0001-7048-4627
- first_name: Wei
  full_name: Kong, Wei
  last_name: Kong
- first_name: Xiao-Li
  full_name: Yang, Xiao-Li
  last_name: Yang
- first_name: Gergely
  full_name: Molnar, Gergely
  id: 34F1AF46-F248-11E8-B48F-1D18A9856A87
  last_name: Molnar
- first_name: Zuzana
  full_name: Vondráková, Zuzana
  last_name: Vondráková
- first_name: Roberta
  full_name: Filepová, Roberta
  last_name: Filepová
- first_name: Jan
  full_name: Petrášek, Jan
  last_name: Petrášek
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Hong-Wei
  full_name: Xue, Hong-Wei
  last_name: Xue
citation:
  ama: Tan S, Zhang X, Kong W, et al. The lipid code-dependent phosphoswitch PDK1–D6PK
    activates PIN-mediated auxin efflux in Arabidopsis. <i>Nature Plants</i>. 2020;6:556-569.
    doi:<a href="https://doi.org/10.1038/s41477-020-0648-9">10.1038/s41477-020-0648-9</a>
  apa: Tan, S., Zhang, X., Kong, W., Yang, X.-L., Molnar, G., Vondráková, Z., … Xue,
    H.-W. (2020). The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated
    auxin efflux in Arabidopsis. <i>Nature Plants</i>. Springer Nature. <a href="https://doi.org/10.1038/s41477-020-0648-9">https://doi.org/10.1038/s41477-020-0648-9</a>
  chicago: Tan, Shutang, Xixi Zhang, Wei Kong, Xiao-Li Yang, Gergely Molnar, Zuzana
    Vondráková, Roberta Filepová, Jan Petrášek, Jiří Friml, and Hong-Wei Xue. “The
    Lipid Code-Dependent Phosphoswitch PDK1–D6PK Activates PIN-Mediated Auxin Efflux
    in Arabidopsis.” <i>Nature Plants</i>. Springer Nature, 2020. <a href="https://doi.org/10.1038/s41477-020-0648-9">https://doi.org/10.1038/s41477-020-0648-9</a>.
  ieee: S. Tan <i>et al.</i>, “The lipid code-dependent phosphoswitch PDK1–D6PK activates
    PIN-mediated auxin efflux in Arabidopsis,” <i>Nature Plants</i>, vol. 6. Springer
    Nature, pp. 556–569, 2020.
  ista: Tan S, Zhang X, Kong W, Yang X-L, Molnar G, Vondráková Z, Filepová R, Petrášek
    J, Friml J, Xue H-W. 2020. The lipid code-dependent phosphoswitch PDK1–D6PK activates
    PIN-mediated auxin efflux in Arabidopsis. Nature Plants. 6, 556–569.
  mla: Tan, Shutang, et al. “The Lipid Code-Dependent Phosphoswitch PDK1–D6PK Activates
    PIN-Mediated Auxin Efflux in Arabidopsis.” <i>Nature Plants</i>, vol. 6, Springer
    Nature, 2020, pp. 556–69, doi:<a href="https://doi.org/10.1038/s41477-020-0648-9">10.1038/s41477-020-0648-9</a>.
  short: S. Tan, X. Zhang, W. Kong, X.-L. Yang, G. Molnar, Z. Vondráková, R. Filepová,
    J. Petrášek, J. Friml, H.-W. Xue, Nature Plants 6 (2020) 556–569.
date_created: 2020-03-21T16:34:16Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2023-08-18T07:05:57Z
day: '01'
department:
- _id: JiFr
doi: 10.1038/s41477-020-0648-9
ec_funded: 1
external_id:
  isi:
  - '000531787500006'
  pmid:
  - '32393881'
intvolume: '         6'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/755504
month: '05'
oa: 1
oa_version: Preprint
page: 556-569
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 256FEF10-B435-11E9-9278-68D0E5697425
  grant_number: 723-2015
  name: Long Term Fellowship
publication: Nature Plants
publication_identifier:
  eissn:
  - '20550278'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1038/s41477-020-0719-y
scopus_import: '1'
status: public
title: The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin
  efflux in Arabidopsis
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 6
year: '2020'
...
---
_id: '7601'
abstract:
- lang: eng
  text: Plasmodesmata (PD) are crucial structures for intercellular communication
    in multicellular plants with remorins being their crucial plant-specific structural
    and functional constituents. The PD biogenesis is an intriguing but poorly understood
    process. By expressing an Arabidopsis remorin protein in mammalian cells, we have
    reconstituted a PD-like filamentous structure, termed remorin filament (RF), connecting
    neighboring cells physically and physiologically. Notably, RFs are capable of
    transporting macromolecules intercellularly, in a way similar to plant PD. With
    further super-resolution microscopic analysis and biochemical characterization,
    we found that RFs are also composed of actin filaments, forming the core skeleton
    structure, aligned with the remorin protein. This unique heterologous filamentous
    structure might explain the molecular mechanism for remorin function as well as
    PD construction. Furthermore, remorin protein exhibits a specific distribution
    manner in the plasma membrane in mammalian cells, representing a lipid nanodomain,
    depending on its lipid modification status. Our studies not only provide crucial
    insights into the mechanism of PD biogenesis, but also uncovers unsuspected fundamental
    mechanistic and evolutionary links between intercellular communication systems
    of plants and animals.
article_processing_charge: No
author:
- first_name: Zhuang
  full_name: Wei, Zhuang
  last_name: Wei
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Tao
  full_name: Liu, Tao
  last_name: Liu
- first_name: Yuan
  full_name: Wu, Yuan
  last_name: Wu
- first_name: Ji-Gang
  full_name: Lei, Ji-Gang
  last_name: Lei
- first_name: ZhengJun
  full_name: Chen, ZhengJun
  last_name: Chen
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Hong-Wei
  full_name: Xue, Hong-Wei
  last_name: Xue
- first_name: Kan
  full_name: Liao, Kan
  last_name: Liao
citation:
  ama: Wei Z, Tan S, Liu T, et al. Plasmodesmata-like intercellular connections by
    plant remorin in animal cells. <i>bioRxiv</i>. 2020. doi:<a href="https://doi.org/10.1101/791137">10.1101/791137</a>
  apa: Wei, Z., Tan, S., Liu, T., Wu, Y., Lei, J.-G., Chen, Z., … Liao, K. (2020).
    Plasmodesmata-like intercellular connections by plant remorin in animal cells.
    <i>bioRxiv</i>. Cold Spring Harbor Laboratory. <a href="https://doi.org/10.1101/791137">https://doi.org/10.1101/791137</a>
  chicago: Wei, Zhuang, Shutang Tan, Tao Liu, Yuan Wu, Ji-Gang Lei, ZhengJun Chen,
    Jiří Friml, Hong-Wei Xue, and Kan Liao. “Plasmodesmata-like Intercellular Connections
    by Plant Remorin in Animal Cells.” <i>BioRxiv</i>. Cold Spring Harbor Laboratory,
    2020. <a href="https://doi.org/10.1101/791137">https://doi.org/10.1101/791137</a>.
  ieee: Z. Wei <i>et al.</i>, “Plasmodesmata-like intercellular connections by plant
    remorin in animal cells,” <i>bioRxiv</i>. Cold Spring Harbor Laboratory, 2020.
  ista: Wei Z, Tan S, Liu T, Wu Y, Lei J-G, Chen Z, Friml J, Xue H-W, Liao K. 2020.
    Plasmodesmata-like intercellular connections by plant remorin in animal cells.
    bioRxiv, <a href="https://doi.org/10.1101/791137">10.1101/791137</a>.
  mla: Wei, Zhuang, et al. “Plasmodesmata-like Intercellular Connections by Plant
    Remorin in Animal Cells.” <i>BioRxiv</i>, Cold Spring Harbor Laboratory, 2020,
    doi:<a href="https://doi.org/10.1101/791137">10.1101/791137</a>.
  short: Z. Wei, S. Tan, T. Liu, Y. Wu, J.-G. Lei, Z. Chen, J. Friml, H.-W. Xue, K.
    Liao, BioRxiv (2020).
date_created: 2020-03-21T16:34:42Z
date_published: 2020-02-19T00:00:00Z
date_updated: 2021-01-12T08:14:26Z
day: '19'
department:
- _id: JiFr
doi: 10.1101/791137
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/791137
month: '02'
oa: 1
oa_version: Preprint
page: '22'
publication: bioRxiv
publication_status: published
publisher: Cold Spring Harbor Laboratory
status: public
title: Plasmodesmata-like intercellular connections by plant remorin in animal cells
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7619'
abstract:
- lang: eng
  text: Cell polarity is a fundamental feature of all multicellular organisms. In
    plants, prominent cell polarity markers are PIN auxin transporters crucial for
    plant development. To identify novel components involved in cell polarity establishment
    and maintenance, we carried out a forward genetic screening with PIN2:PIN1-HA;pin2
    Arabidopsis plants, which ectopically express predominantly basally localized
    PIN1 in the root epidermal cells leading to agravitropic root growth. From the
    screen, we identified the regulator of PIN polarity 12 (repp12) mutation, which
    restored gravitropic root growth and caused PIN1-HA polarity switch from basal
    to apical side of root epidermal cells. Complementation experiments established
    the repp12 causative mutation as an amino acid substitution in Aminophospholipid
    ATPase3 (ALA3), a phospholipid flippase with predicted function in vesicle formation.
    ala3 T-DNA mutants show defects in many auxin-regulated processes, in asymmetric
    auxin distribution and in PIN trafficking. Analysis of quintuple and sextuple
    mutants confirmed a crucial role of ALA proteins in regulating plant development
    and in PIN trafficking and polarity. Genetic and physical interaction studies
    revealed that ALA3 functions together with GNOM and BIG3 ARF GEFs. Taken together,
    our results identified ALA3 flippase as an important interactor and regulator
    of ARF GEF functioning in PIN polarity, trafficking and auxin-mediated development.
acknowledged_ssus:
- _id: Bio
article_processing_charge: No
article_type: original
author:
- first_name: Xixi
  full_name: Zhang, Xixi
  id: 61A66458-47E9-11EA-85BA-8AEAAF14E49A
  last_name: Zhang
  orcid: 0000-0001-7048-4627
- first_name: Maciek
  full_name: Adamowski, Maciek
  id: 45F536D2-F248-11E8-B48F-1D18A9856A87
  last_name: Adamowski
  orcid: 0000-0001-6463-5257
- first_name: Petra
  full_name: Marhavá, Petra
  id: 44E59624-F248-11E8-B48F-1D18A9856A87
  last_name: Marhavá
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Yuzhou
  full_name: Zhang, Yuzhou
  id: 3B6137F2-F248-11E8-B48F-1D18A9856A87
  last_name: Zhang
  orcid: 0000-0003-2627-6956
- first_name: Lesia
  full_name: Rodriguez Solovey, Lesia
  id: 3922B506-F248-11E8-B48F-1D18A9856A87
  last_name: Rodriguez Solovey
  orcid: 0000-0002-7244-7237
- first_name: Marta
  full_name: Zwiewka, Marta
  last_name: Zwiewka
- first_name: Vendula
  full_name: Pukyšová, Vendula
  last_name: Pukyšová
- first_name: Adrià Sans
  full_name: Sánchez, Adrià Sans
  last_name: Sánchez
- first_name: Vivek Kumar
  full_name: Raxwal, Vivek Kumar
  last_name: Raxwal
- first_name: Christian S.
  full_name: Hardtke, Christian S.
  last_name: Hardtke
- first_name: Tomasz
  full_name: Nodzynski, Tomasz
  last_name: Nodzynski
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Zhang X, Adamowski M, Marhavá P, et al. Arabidopsis flippases cooperate with
    ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin
    transporters. <i>The Plant Cell</i>. 2020;32(5):1644-1664. doi:<a href="https://doi.org/10.1105/tpc.19.00869">10.1105/tpc.19.00869</a>
  apa: Zhang, X., Adamowski, M., Marhavá, P., Tan, S., Zhang, Y., Rodriguez Solovey,
    L., … Friml, J. (2020). Arabidopsis flippases cooperate with ARF GTPase exchange
    factors to regulate the trafficking and polarity of PIN auxin transporters. <i>The
    Plant Cell</i>. American Society of Plant Biologists. <a href="https://doi.org/10.1105/tpc.19.00869">https://doi.org/10.1105/tpc.19.00869</a>
  chicago: Zhang, Xixi, Maciek Adamowski, Petra Marhavá, Shutang Tan, Yuzhou Zhang,
    Lesia Rodriguez Solovey, Marta Zwiewka, et al. “Arabidopsis Flippases Cooperate
    with ARF GTPase Exchange Factors to Regulate the Trafficking and Polarity of PIN
    Auxin Transporters.” <i>The Plant Cell</i>. American Society of Plant Biologists,
    2020. <a href="https://doi.org/10.1105/tpc.19.00869">https://doi.org/10.1105/tpc.19.00869</a>.
  ieee: X. Zhang <i>et al.</i>, “Arabidopsis flippases cooperate with ARF GTPase exchange
    factors to regulate the trafficking and polarity of PIN auxin transporters,” <i>The
    Plant Cell</i>, vol. 32, no. 5. American Society of Plant Biologists, pp. 1644–1664,
    2020.
  ista: Zhang X, Adamowski M, Marhavá P, Tan S, Zhang Y, Rodriguez Solovey L, Zwiewka
    M, Pukyšová V, Sánchez AS, Raxwal VK, Hardtke CS, Nodzynski T, Friml J. 2020.
    Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the
    trafficking and polarity of PIN auxin transporters. The Plant Cell. 32(5), 1644–1664.
  mla: Zhang, Xixi, et al. “Arabidopsis Flippases Cooperate with ARF GTPase Exchange
    Factors to Regulate the Trafficking and Polarity of PIN Auxin Transporters.” <i>The
    Plant Cell</i>, vol. 32, no. 5, American Society of Plant Biologists, 2020, pp.
    1644–64, doi:<a href="https://doi.org/10.1105/tpc.19.00869">10.1105/tpc.19.00869</a>.
  short: X. Zhang, M. Adamowski, P. Marhavá, S. Tan, Y. Zhang, L. Rodriguez Solovey,
    M. Zwiewka, V. Pukyšová, A.S. Sánchez, V.K. Raxwal, C.S. Hardtke, T. Nodzynski,
    J. Friml, The Plant Cell 32 (2020) 1644–1664.
date_created: 2020-03-28T07:39:22Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2023-09-05T12:21:06Z
day: '01'
department:
- _id: JiFr
doi: 10.1105/tpc.19.00869
ec_funded: 1
external_id:
  isi:
  - '000545741500030'
  pmid:
  - '32193204'
intvolume: '        32'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1105/tpc.19.00869
month: '05'
oa: 1
oa_version: Published Version
page: 1644-1664
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
publication: The Plant Cell
publication_identifier:
  eissn:
  - 1532-298X
  issn:
  - 1040-4651
publication_status: published
publisher: American Society of Plant Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate
  the trafficking and polarity of PIN auxin transporters
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 32
year: '2020'
...
---
_id: '6104'
abstract:
- lang: eng
  text: Abiotic stress poses constant challenges for plant survival and is a serious
    problem for global agricultural productivity. On a molecular level, stress conditions
    result in elevation of reactive oxygen species (ROS) production causing oxidative
    stress associated with oxidation of proteins and nucleic acids as well as impairment
    of membrane functions. Adaptation of root growth to ROS accumulation is facilitated
    through modification of auxin and cytokinin hormone homeostasis. Here, we report
    that in Arabidopsis root meristem, ROS-induced changes of auxin levels correspond
    to decreased abundance of PIN auxin efflux carriers at the plasma membrane (PM).
    Specifically, increase in H2O2 levels affects PIN2 endocytic recycling. We show
    that the PIN2 intracellular trafficking during adaptation to oxidative stress
    requires the function of the ADP-ribosylation factor (ARF)-guanine-nucleotide
    exchange factor (GEF) BEN1, an actin-associated regulator of the trafficking from
    the PM to early endosomes and, presumably, indirectly, trafficking to the vacuoles.
    We propose that H2O2 levels affect the actin dynamics thus modulating ARF-GEF-dependent
    trafficking of PIN2. This mechanism provides a way how root growth acclimates
    to stress and adapts to a changing environment.
article_processing_charge: No
author:
- first_name: Marta
  full_name: Zwiewka, Marta
  last_name: Zwiewka
- first_name: Agnieszka
  full_name: Bielach, Agnieszka
  last_name: Bielach
- first_name: Prashanth
  full_name: Tamizhselvan, Prashanth
  last_name: Tamizhselvan
- first_name: Sharmila
  full_name: Madhavan, Sharmila
  last_name: Madhavan
- first_name: Eman Elrefaay
  full_name: Ryad, Eman Elrefaay
  last_name: Ryad
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Mónika
  full_name: Hrtyan, Mónika
  id: 45A71A74-F248-11E8-B48F-1D18A9856A87
  last_name: Hrtyan
- first_name: Petre
  full_name: Dobrev, Petre
  last_name: Dobrev
- first_name: Radomira
  full_name: Vanková, Radomira
  last_name: Vanková
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Vanesa B.
  full_name: Tognetti, Vanesa B.
  last_name: Tognetti
citation:
  ama: Zwiewka M, Bielach A, Tamizhselvan P, et al. Root adaptation to H2O2-induced
    oxidative stress by ARF-GEF BEN1- and cytoskeleton-mediated PIN2 trafficking.
    <i>Plant and Cell Physiology</i>. 2019;60(2):255-273. doi:<a href="https://doi.org/10.1093/pcp/pcz001">10.1093/pcp/pcz001</a>
  apa: Zwiewka, M., Bielach, A., Tamizhselvan, P., Madhavan, S., Ryad, E. E., Tan,
    S., … Tognetti, V. B. (2019). Root adaptation to H2O2-induced oxidative stress
    by ARF-GEF BEN1- and cytoskeleton-mediated PIN2 trafficking. <i>Plant and Cell
    Physiology</i>. Oxford University Press. <a href="https://doi.org/10.1093/pcp/pcz001">https://doi.org/10.1093/pcp/pcz001</a>
  chicago: Zwiewka, Marta, Agnieszka Bielach, Prashanth Tamizhselvan, Sharmila Madhavan,
    Eman Elrefaay Ryad, Shutang Tan, Mónika Hrtyan, et al. “Root Adaptation to H2O2-Induced
    Oxidative Stress by ARF-GEF BEN1- and Cytoskeleton-Mediated PIN2 Trafficking.”
    <i>Plant and Cell Physiology</i>. Oxford University Press, 2019. <a href="https://doi.org/10.1093/pcp/pcz001">https://doi.org/10.1093/pcp/pcz001</a>.
  ieee: M. Zwiewka <i>et al.</i>, “Root adaptation to H2O2-induced oxidative stress
    by ARF-GEF BEN1- and cytoskeleton-mediated PIN2 trafficking,” <i>Plant and Cell
    Physiology</i>, vol. 60, no. 2. Oxford University Press, pp. 255–273, 2019.
  ista: Zwiewka M, Bielach A, Tamizhselvan P, Madhavan S, Ryad EE, Tan S, Hrtyan M,
    Dobrev P, Vanková R, Friml J, Tognetti VB. 2019. Root adaptation to H2O2-induced
    oxidative stress by ARF-GEF BEN1- and cytoskeleton-mediated PIN2 trafficking.
    Plant and Cell Physiology. 60(2), 255–273.
  mla: Zwiewka, Marta, et al. “Root Adaptation to H2O2-Induced Oxidative Stress by
    ARF-GEF BEN1- and Cytoskeleton-Mediated PIN2 Trafficking.” <i>Plant and Cell Physiology</i>,
    vol. 60, no. 2, Oxford University Press, 2019, pp. 255–73, doi:<a href="https://doi.org/10.1093/pcp/pcz001">10.1093/pcp/pcz001</a>.
  short: M. Zwiewka, A. Bielach, P. Tamizhselvan, S. Madhavan, E.E. Ryad, S. Tan,
    M. Hrtyan, P. Dobrev, R. Vanková, J. Friml, V.B. Tognetti, Plant and Cell Physiology
    60 (2019) 255–273.
date_created: 2019-03-17T22:59:14Z
date_published: 2019-02-01T00:00:00Z
date_updated: 2023-08-25T08:05:28Z
day: '01'
department:
- _id: JiFr
doi: 10.1093/pcp/pcz001
external_id:
  isi:
  - '000459634300002'
  pmid:
  - '30668780'
intvolume: '        60'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa_version: None
page: 255-273
pmid: 1
publication: Plant and Cell Physiology
publication_identifier:
  eissn:
  - 1471-9053
  issn:
  - 0032-0781
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Root adaptation to H2O2-induced oxidative stress by ARF-GEF BEN1- and cytoskeleton-mediated
  PIN2 trafficking
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 60
year: '2019'
...
