---
_id: '2383'
abstract:
- lang: eng
text: We study the relativistic electron-positron field at positive temperature
in the Hartree-Fock approximation. We consider both the case with and without
exchange terms, and investigate the existence and properties of minimizers. Our
approach is non-perturbative in the sense that the relevant electron subspace
is determined in a self-consistent way. The present work is an extension of previous
work by Hainzl, Lewin, Séré and Solovej where the case of zero temperature was
considered.
author:
- first_name: Christian
full_name: Hainzl, Christian
last_name: Hainzl
- first_name: Mathieu
full_name: Lewin, Mathieu
last_name: Lewin
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Hainzl C, Lewin M, Seiringer R. A nonlinear model for relativistic electrons
at positive temperature. Reviews in Mathematical Physics. 2008;20(10):1283-1307.
doi:10.1142/S0129055X08003547
apa: Hainzl, C., Lewin, M., & Seiringer, R. (2008). A nonlinear model for relativistic
electrons at positive temperature. Reviews in Mathematical Physics. World
Scientific Publishing. https://doi.org/10.1142/S0129055X08003547
chicago: Hainzl, Christian, Mathieu Lewin, and Robert Seiringer. “A Nonlinear Model
for Relativistic Electrons at Positive Temperature.” Reviews in Mathematical
Physics. World Scientific Publishing, 2008. https://doi.org/10.1142/S0129055X08003547.
ieee: C. Hainzl, M. Lewin, and R. Seiringer, “A nonlinear model for relativistic
electrons at positive temperature,” Reviews in Mathematical Physics, vol.
20, no. 10. World Scientific Publishing, pp. 1283–1307, 2008.
ista: Hainzl C, Lewin M, Seiringer R. 2008. A nonlinear model for relativistic electrons
at positive temperature. Reviews in Mathematical Physics. 20(10), 1283–1307.
mla: Hainzl, Christian, et al. “A Nonlinear Model for Relativistic Electrons at
Positive Temperature.” Reviews in Mathematical Physics, vol. 20, no. 10,
World Scientific Publishing, 2008, pp. 1283–307, doi:10.1142/S0129055X08003547.
short: C. Hainzl, M. Lewin, R. Seiringer, Reviews in Mathematical Physics 20 (2008)
1283–1307.
date_created: 2018-12-11T11:57:21Z
date_published: 2008-11-01T00:00:00Z
date_updated: 2021-01-12T06:57:09Z
day: '01'
doi: 10.1142/S0129055X08003547
extern: 1
intvolume: ' 20'
issue: '10'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/0802.4054
month: '11'
oa: 1
page: 1283 - 1307
publication: Reviews in Mathematical Physics
publication_status: published
publisher: World Scientific Publishing
publist_id: '4545'
quality_controlled: 0
status: public
title: A nonlinear model for relativistic electrons at positive temperature
type: journal_article
volume: 20
year: '2008'
...
---
_id: '2702'
abstract:
- lang: eng
text: |
We review our proof that in a scaling limit, the time evolution of a quantum particle in a static random environment leads to a diffusion equation. In particular, we discuss the role of Feynman graph expansions and of renormalization.
author:
- first_name: László
full_name: László Erdös
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
- first_name: Manfred
full_name: Salmhofer, Manfred
last_name: Salmhofer
- first_name: Horng
full_name: Yau, Horng-Tzer
last_name: Yau
citation:
ama: 'Erdös L, Salmhofer M, Yau H. Feynman graphs and renormalization in quantum
diffusion. In: World Scientific Publishing; 2008:167-182. doi:10.1142/9789812833556_0011'
apa: Erdös, L., Salmhofer, M., & Yau, H. (2008). Feynman graphs and renormalization
in quantum diffusion (pp. 167–182). Presented at the Symposium in Honor of Wolfhart
Zimmermann’s 80th Birthday, World Scientific Publishing. https://doi.org/10.1142/9789812833556_0011
chicago: Erdös, László, Manfred Salmhofer, and Horng Yau. “Feynman Graphs and Renormalization
in Quantum Diffusion,” 167–82. World Scientific Publishing, 2008. https://doi.org/10.1142/9789812833556_0011.
ieee: L. Erdös, M. Salmhofer, and H. Yau, “Feynman graphs and renormalization in
quantum diffusion,” presented at the Symposium in Honor of Wolfhart Zimmermann’s
80th Birthday, 2008, pp. 167–182.
ista: Erdös L, Salmhofer M, Yau H. 2008. Feynman graphs and renormalization in quantum
diffusion. Symposium in Honor of Wolfhart Zimmermann’s 80th Birthday, 167–182.
mla: Erdös, László, et al. Feynman Graphs and Renormalization in Quantum Diffusion.
World Scientific Publishing, 2008, pp. 167–82, doi:10.1142/9789812833556_0011.
short: L. Erdös, M. Salmhofer, H. Yau, in:, World Scientific Publishing, 2008, pp.
167–182.
conference:
name: Symposium in Honor of Wolfhart Zimmermann's 80th Birthday
date_created: 2018-12-11T11:59:09Z
date_published: 2008-01-01T00:00:00Z
date_updated: 2021-01-12T06:59:09Z
day: '01'
doi: 10.1142/9789812833556_0011
extern: 1
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/0806.4751
month: '01'
oa: 1
page: 167 - 182
publication_status: published
publisher: World Scientific Publishing
publist_id: '4194'
quality_controlled: 0
status: public
title: Feynman graphs and renormalization in quantum diffusion
type: conference
year: '2008'
...
---
_id: '3037'
author:
- first_name: Elena
full_name: Feraru, Elena
last_name: Feraru
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Feraru E, Friml J. PIN polar targeting. Plant Physiology. 2008;147(4):1553-1559.
doi:10.1104/pp.108.121756
apa: Feraru, E., & Friml, J. (2008). PIN polar targeting. Plant Physiology.
American Society of Plant Biologists. https://doi.org/10.1104/pp.108.121756
chicago: Feraru, Elena, and Jiří Friml. “PIN Polar Targeting.” Plant Physiology.
American Society of Plant Biologists, 2008. https://doi.org/10.1104/pp.108.121756.
ieee: E. Feraru and J. Friml, “PIN polar targeting,” Plant Physiology, vol.
147, no. 4. American Society of Plant Biologists, pp. 1553–1559, 2008.
ista: Feraru E, Friml J. 2008. PIN polar targeting. Plant Physiology. 147(4), 1553–1559.
mla: Feraru, Elena, and Jiří Friml. “PIN Polar Targeting.” Plant Physiology,
vol. 147, no. 4, American Society of Plant Biologists, 2008, pp. 1553–59, doi:10.1104/pp.108.121756.
short: E. Feraru, J. Friml, Plant Physiology 147 (2008) 1553–1559.
date_created: 2018-12-11T12:01:00Z
date_published: 2008-08-04T00:00:00Z
date_updated: 2021-01-12T07:40:36Z
day: '04'
doi: 10.1104/pp.108.121756
extern: '1'
external_id:
pmid:
- '18678746'
intvolume: ' 147'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2492634/
month: '08'
oa: 1
oa_version: Published Version
page: 1553 - 1559
pmid: 1
publication: Plant Physiology
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '3664'
quality_controlled: '1'
status: public
title: PIN polar targeting
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 147
year: '2008'
...
---
_id: '3307'
abstract:
- lang: eng
text: A complete mitochondrial (mt) genome sequence was reconstructed from a 38,000
year-old Neandertal individual with 8341 mtDNA sequences identified among 4.8
Gb of DNA generated from ∼0.3 g of bone. Analysis of the assembled sequence unequivocally
establishes that the Neandertal mtDNA falls outside the variation of extant human
mtDNAs, and allows an estimate of the divergence date between the two mtDNA lineages
of 660,000 ± 140,000 years. Of the 13 proteins encoded in the mtDNA, subunit 2
of cytochrome c oxidase of the mitochondrial electron transport chain has experienced
the largest number of amino acid substitutions in human ancestors since the separation
from Neandertals. There is evidence that purifying selection in the Neandertal
mtDNA was reduced compared with other primate lineages, suggesting that the effective
population size of Neandertals was small.
author:
- first_name: Richard
full_name: Green, Richard E
last_name: Green
- first_name: Anna
full_name: 'Malaspinas, Anna-Sapfo '
last_name: Malaspinas
- first_name: Johannes
full_name: Krause, Johannes
last_name: Krause
- first_name: Adrian
full_name: Briggs, Adrian W
last_name: Briggs
- first_name: Philip
full_name: Johnson, Philip L
last_name: Johnson
- first_name: Caroline
full_name: Caroline Uhler
id: 49ADD78E-F248-11E8-B48F-1D18A9856A87
last_name: Uhler
orcid: 0000-0002-7008-0216
- first_name: Matthias
full_name: Meyer, Matthias
last_name: Meyer
- first_name: Jeffrey
full_name: Good, Jeffrey M
last_name: Good
- first_name: Tomislav
full_name: Maricic, Tomislav
last_name: Maricic
- first_name: Udo
full_name: Stenzel, Udo
last_name: Stenzel
- first_name: Kay
full_name: Prüfer, Kay
last_name: Prüfer
- first_name: Michael
full_name: Siebauer, Michael F
last_name: Siebauer
- first_name: Hernän
full_name: Burbano, Hernän A
last_name: Burbano
- first_name: Michael
full_name: Ronan, Michael T
last_name: Ronan
- first_name: Jonathan
full_name: Rothberg, Jonathan M
last_name: Rothberg
- first_name: Michael
full_name: Egholm, Michael
last_name: Egholm
- first_name: Pavao
full_name: Rudan, Pavao
last_name: Rudan
- first_name: Dejana
full_name: Brajković, Dejana
last_name: Brajković
- first_name: Željko
full_name: Kućan, Željko
last_name: Kućan
- first_name: Ivan
full_name: Gušić, Ivan
last_name: Gušić
- first_name: Mårten
full_name: Wikström, Mårten K
last_name: Wikström
- first_name: Liisa
full_name: Laakkonen, Liisa J
last_name: Laakkonen
- first_name: Janet
full_name: Kelso, Janet F
last_name: Kelso
- first_name: Montgomery
full_name: Slatkin, Montgomery
last_name: Slatkin
- first_name: Svante
full_name: Pääbo, Svante H
last_name: Pääbo
citation:
ama: Green R, Malaspinas A, Krause J, et al. A complete neandertal mitochondrial
genome sequence determined by highhhroughput sequencing. Cell. 2008;134:416-426.
doi:10.1016/j.cell.2008.06.021
apa: Green, R., Malaspinas, A., Krause, J., Briggs, A., Johnson, P., Uhler, C.,
… Pääbo, S. (2008). A complete neandertal mitochondrial genome sequence determined
by highhhroughput sequencing. Cell. Cell Press. https://doi.org/10.1016/j.cell.2008.06.021
chicago: Green, Richard, Anna Malaspinas, Johannes Krause, Adrian Briggs, Philip
Johnson, Caroline Uhler, Matthias Meyer, et al. “A Complete Neandertal Mitochondrial
Genome Sequence Determined by Highhhroughput Sequencing.” Cell. Cell Press,
2008. https://doi.org/10.1016/j.cell.2008.06.021.
ieee: R. Green et al., “A complete neandertal mitochondrial genome sequence
determined by highhhroughput sequencing,” Cell, vol. 134. Cell Press, pp.
416–426, 2008.
ista: Green R, Malaspinas A, Krause J, Briggs A, Johnson P, Uhler C, Meyer M, Good
J, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano H, Ronan M, Rothberg J,
Egholm M, Rudan P, Brajković D, Kućan Ž, Gušić I, Wikström M, Laakkonen L, Kelso
J, Slatkin M, Pääbo S. 2008. A complete neandertal mitochondrial genome sequence
determined by highhhroughput sequencing. Cell. 134, 416–426.
mla: Green, Richard, et al. “A Complete Neandertal Mitochondrial Genome Sequence
Determined by Highhhroughput Sequencing.” Cell, vol. 134, Cell Press, 2008,
pp. 416–26, doi:10.1016/j.cell.2008.06.021.
short: R. Green, A. Malaspinas, J. Krause, A. Briggs, P. Johnson, C. Uhler, M. Meyer,
J. Good, T. Maricic, U. Stenzel, K. Prüfer, M. Siebauer, H. Burbano, M. Ronan,
J. Rothberg, M. Egholm, P. Rudan, D. Brajković, Ž. Kućan, I. Gušić, M. Wikström,
L. Laakkonen, J. Kelso, M. Slatkin, S. Pääbo, Cell 134 (2008) 416–426.
date_created: 2018-12-11T12:02:35Z
date_published: 2008-08-01T00:00:00Z
date_updated: 2021-01-12T07:42:32Z
day: '01'
doi: 10.1016/j.cell.2008.06.021
extern: 1
intvolume: ' 134'
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2602844/
month: '08'
oa: 1
page: 416 - 426
publication: Cell
publication_status: published
publisher: Cell Press
publist_id: '3333'
quality_controlled: 0
status: public
title: A complete neandertal mitochondrial genome sequence determined by highhhroughput
sequencing
type: journal_article
volume: 134
year: '2008'
...
---
_id: '11113'
abstract:
- lang: eng
text: The nuclear envelope (NE), a double membrane enclosing the nucleus of eukaryotic
cells, controls the flow of information between the nucleoplasm and the cytoplasm
and provides a scaffold for the organization of chromatin and the cytoskeleton.
In dividing metazoan cells, the NE breaks down at the onset of mitosis and then
reforms around segregated chromosomes to generate the daughter nuclei. Recent
data from intact cells and cell-free nuclear assembly systems suggest that the
endoplasmic reticulum (ER) is the source of membrane for NE assembly. At the end
of mitosis, ER membrane tubules are targeted to chromatin via tubule ends and
reorganized into flat nuclear membrane sheets by specific DNA-binding membrane
proteins. In contrast to previous models, which proposed vesicle fusion to be
the principal mechanism of NE formation, these new studies suggest that the nuclear
membrane forms by the chromatin-mediated reshaping of the ER.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Daniel J.
full_name: Anderson, Daniel J.
last_name: Anderson
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
citation:
ama: Anderson DJ, Hetzer M. Shaping the endoplasmic reticulum into the nuclear envelope.
Journal of Cell Science. 2008;121(2):137-142. doi:10.1242/jcs.005777
apa: Anderson, D. J., & Hetzer, M. (2008). Shaping the endoplasmic reticulum
into the nuclear envelope. Journal of Cell Science. The Company of Biologists.
https://doi.org/10.1242/jcs.005777
chicago: Anderson, Daniel J., and Martin Hetzer. “Shaping the Endoplasmic Reticulum
into the Nuclear Envelope.” Journal of Cell Science. The Company of Biologists,
2008. https://doi.org/10.1242/jcs.005777.
ieee: D. J. Anderson and M. Hetzer, “Shaping the endoplasmic reticulum into the
nuclear envelope,” Journal of Cell Science, vol. 121, no. 2. The Company
of Biologists, pp. 137–142, 2008.
ista: Anderson DJ, Hetzer M. 2008. Shaping the endoplasmic reticulum into the nuclear
envelope. Journal of Cell Science. 121(2), 137–142.
mla: Anderson, Daniel J., and Martin Hetzer. “Shaping the Endoplasmic Reticulum
into the Nuclear Envelope.” Journal of Cell Science, vol. 121, no. 2, The
Company of Biologists, 2008, pp. 137–42, doi:10.1242/jcs.005777.
short: D.J. Anderson, M. Hetzer, Journal of Cell Science 121 (2008) 137–142.
date_created: 2022-04-07T07:55:46Z
date_published: 2008-01-15T00:00:00Z
date_updated: 2022-07-18T08:56:10Z
day: '15'
doi: 10.1242/jcs.005777
extern: '1'
external_id:
pmid:
- '18187447'
intvolume: ' 121'
issue: '2'
keyword:
- Cell Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1242/jcs.005777
month: '01'
oa: 1
oa_version: Published Version
page: 137-142
pmid: 1
publication: Journal of Cell Science
publication_identifier:
eissn:
- 1477-9137
issn:
- 0021-9533
publication_status: published
publisher: The Company of Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: Shaping the endoplasmic reticulum into the nuclear envelope
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 121
year: '2008'
...
---
_id: '11114'
abstract:
- lang: eng
text: We present a miniaturized pull-down method for the detection of protein-protein
interactions using standard affinity chromatography reagents. Binding events between
different proteins, which are color-coded with quantum dots (QDs), are visualized
on single affinity chromatography beads by fluorescence microscopy. The use of
QDs for single molecule detection allows the simultaneous analysis of multiple
protein-protein binding events and reduces the amount of time and material needed
to perform a pull-down experiment.
article_number: e2061
article_processing_charge: No
article_type: original
author:
- first_name: Roberta
full_name: Schulte, Roberta
last_name: Schulte
- first_name: Jessica
full_name: Talamas, Jessica
last_name: Talamas
- first_name: Christine
full_name: Doucet, Christine
last_name: Doucet
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
citation:
ama: Schulte R, Talamas J, Doucet C, Hetzer M. Single bead affinity detection (SINBAD)
for the analysis of protein-protein interactions. PLoS ONE. 2008;3(4).
doi:10.1371/journal.pone.0002061
apa: Schulte, R., Talamas, J., Doucet, C., & Hetzer, M. (2008). Single bead
affinity detection (SINBAD) for the analysis of protein-protein interactions.
PLoS ONE. Public Library of Science. https://doi.org/10.1371/journal.pone.0002061
chicago: Schulte, Roberta, Jessica Talamas, Christine Doucet, and Martin Hetzer.
“Single Bead Affinity Detection (SINBAD) for the Analysis of Protein-Protein Interactions.”
PLoS ONE. Public Library of Science, 2008. https://doi.org/10.1371/journal.pone.0002061.
ieee: R. Schulte, J. Talamas, C. Doucet, and M. Hetzer, “Single bead affinity detection
(SINBAD) for the analysis of protein-protein interactions,” PLoS ONE, vol.
3, no. 4. Public Library of Science, 2008.
ista: Schulte R, Talamas J, Doucet C, Hetzer M. 2008. Single bead affinity detection
(SINBAD) for the analysis of protein-protein interactions. PLoS ONE. 3(4), e2061.
mla: Schulte, Roberta, et al. “Single Bead Affinity Detection (SINBAD) for the Analysis
of Protein-Protein Interactions.” PLoS ONE, vol. 3, no. 4, e2061, Public
Library of Science, 2008, doi:10.1371/journal.pone.0002061.
short: R. Schulte, J. Talamas, C. Doucet, M. Hetzer, PLoS ONE 3 (2008).
date_created: 2022-04-07T07:55:57Z
date_published: 2008-04-30T00:00:00Z
date_updated: 2022-07-18T08:56:36Z
day: '30'
doi: 10.1371/journal.pone.0002061
extern: '1'
external_id:
pmid:
- '18446240'
intvolume: ' 3'
issue: '4'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
url: ' https://doi.org/10.1371/journal.pone.0002061'
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: PLoS ONE
publication_identifier:
issn:
- 1932-6203
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Single bead affinity detection (SINBAD) for the analysis of protein-protein
interactions
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 3
year: '2008'
...
---
_id: '128'
abstract:
- lang: eng
text: 'A 671 nm diode laser with a mode-hop-free tuning range of 40 GHz is described.
This long tuning range is achieved by simultaneously ramping the external cavity
length with the laser injection current. The laser output pointing remains fixed,
independent of its frequency because of the cover slip cavity design. This system
is simple, economical, robust, and easy to use for spectroscopy, as we demonstrate
with lithium vapor and lithium atom beam experiments. '
acknowledgement: "National Science Foundation\r\nThis work was supported with NSF
Grant No. PHY-0653623. We thank Dr. W. Bickel and Dr. J. Jones for diagnostic equipment,
K. Guerin for assistance with mechanical drawings, and M. Parker of Rincon Research
Inc. for optics components."
article_number: '106108'
arxiv: 1
author:
- first_name: Adra
full_name: Carr, Adra
last_name: Carr
- first_name: Yancey
full_name: Serchest, Yancey
last_name: Serchest
- first_name: Scott R
full_name: Waitukaitis, Scott R
id: 3A1FFC16-F248-11E8-B48F-1D18A9856A87
last_name: Waitukaitis
orcid: 0000-0002-2299-3176
- first_name: John
full_name: Perreault, John
last_name: Perreault
- first_name: Vincent
full_name: Lonij, Vincent
last_name: Lonij
- first_name: Alexander
full_name: Cronin, Alexander
last_name: Cronin
citation:
ama: Carr A, Serchest Y, Waitukaitis SR, Perreault J, Lonij V, Cronin A. Cover slip
external cavity diode laser. Review of Scientific Instruments. 2007;78(10).
doi:10.1063/1.2801006
apa: Carr, A., Serchest, Y., Waitukaitis, S. R., Perreault, J., Lonij, V., &
Cronin, A. (2007). Cover slip external cavity diode laser. Review of Scientific
Instruments. American Institute of Physics. https://doi.org/10.1063/1.2801006
chicago: Carr, Adra, Yancey Serchest, Scott R Waitukaitis, John Perreault, Vincent
Lonij, and Alexander Cronin. “Cover Slip External Cavity Diode Laser.” Review
of Scientific Instruments. American Institute of Physics, 2007. https://doi.org/10.1063/1.2801006.
ieee: A. Carr, Y. Serchest, S. R. Waitukaitis, J. Perreault, V. Lonij, and A. Cronin,
“Cover slip external cavity diode laser,” Review of Scientific Instruments,
vol. 78, no. 10. American Institute of Physics, 2007.
ista: Carr A, Serchest Y, Waitukaitis SR, Perreault J, Lonij V, Cronin A. 2007.
Cover slip external cavity diode laser. Review of Scientific Instruments. 78(10),
106108.
mla: Carr, Adra, et al. “Cover Slip External Cavity Diode Laser.” Review of Scientific
Instruments, vol. 78, no. 10, 106108, American Institute of Physics, 2007,
doi:10.1063/1.2801006.
short: A. Carr, Y. Serchest, S.R. Waitukaitis, J. Perreault, V. Lonij, A. Cronin,
Review of Scientific Instruments 78 (2007).
date_created: 2018-12-11T11:44:46Z
date_published: 2007-10-29T00:00:00Z
date_updated: 2021-01-12T06:49:35Z
day: '29'
doi: 10.1063/1.2801006
extern: '1'
external_id:
arxiv:
- '0708.0014'
intvolume: ' 78'
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/0708.0014
month: '10'
oa: 1
oa_version: Preprint
publication: Review of Scientific Instruments
publication_status: published
publisher: American Institute of Physics
publist_id: '7925'
quality_controlled: '1'
status: public
title: Cover slip external cavity diode laser
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 78
year: '2007'
...
---
_id: '9149'
abstract:
- lang: eng
text: "The interaction of tidal currents with sea-floor topography results in the
radiation of internal gravity waves into the ocean interior. These waves are called
internal tides and their dissipation due to nonlinear wave breaking and concomitant
three-dimensional turbulence could play an important role in the mixing of the
abyssal ocean, and hence in controlling the large-scale ocean circulation.\r\nAs
part of on-going work aimed at providing a theory for the vertical distribution
of wave breaking over sea-floor topography, in this paper we investigate the instability
of internal tides in a very simple linear model that helps us to relate the formation
of unstable regions to simple features in the sea-floor topography. For two-dimensional
tides over one-dimensional topography we find that the formation of overturning
instabilities is closely linked to the singularities in the topography shape and
that it is possible to have stable waves at the sea floor and unstable waves in
the ocean interior above.\r\nFor three-dimensional tides over two-dimensional
topography there is in addition an effect of geometric focusing of wave energy
into localized regions of high wave amplitude, and we investigate this focusing
effect in simple examples. Overall, we find that the distribution of unstable
wave breaking regions can be highly non-uniform even for very simple idealized
topography shapes."
article_processing_charge: No
article_type: original
author:
- first_name: Oliver
full_name: Bühler, Oliver
last_name: Bühler
- first_name: Caroline J
full_name: Muller, Caroline J
id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
last_name: Muller
orcid: 0000-0001-5836-5350
citation:
ama: Bühler O, Muller CJ. Instability and focusing of internal tides in the deep
ocean. Journal of Fluid Mechanics. 2007;588:1-28. doi:10.1017/s0022112007007410
apa: Bühler, O., & Muller, C. J. (2007). Instability and focusing of internal
tides in the deep ocean. Journal of Fluid Mechanics. Cambridge University
Press. https://doi.org/10.1017/s0022112007007410
chicago: Bühler, Oliver, and Caroline J Muller. “Instability and Focusing of Internal
Tides in the Deep Ocean.” Journal of Fluid Mechanics. Cambridge University
Press, 2007. https://doi.org/10.1017/s0022112007007410.
ieee: O. Bühler and C. J. Muller, “Instability and focusing of internal tides in
the deep ocean,” Journal of Fluid Mechanics, vol. 588. Cambridge University
Press, pp. 1–28, 2007.
ista: Bühler O, Muller CJ. 2007. Instability and focusing of internal tides in the
deep ocean. Journal of Fluid Mechanics. 588, 1–28.
mla: Bühler, Oliver, and Caroline J. Muller. “Instability and Focusing of Internal
Tides in the Deep Ocean.” Journal of Fluid Mechanics, vol. 588, Cambridge
University Press, 2007, pp. 1–28, doi:10.1017/s0022112007007410.
short: O. Bühler, C.J. Muller, Journal of Fluid Mechanics 588 (2007) 1–28.
date_created: 2021-02-15T14:41:45Z
date_published: 2007-10-10T00:00:00Z
date_updated: 2022-01-24T13:43:36Z
day: '10'
doi: 10.1017/s0022112007007410
extern: '1'
intvolume: ' 588'
keyword:
- mechanical engineering
- mechanics of materials
- condensed matter physics
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1017/S0022112007007410
month: '10'
oa: 1
oa_version: None
page: 1-28
publication: Journal of Fluid Mechanics
publication_identifier:
issn:
- 0022-1120
- 1469-7645
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
status: public
title: Instability and focusing of internal tides in the deep ocean
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 588
year: '2007'
...
---
_id: '7753'
abstract:
- lang: eng
text: 'In many species, females show reduced expression of a trait that is under
sexual selection in males, and this expression is thought to be maintained through
genetic associations with the male phenotype. However, there is also the potential
for the female trait to convey an advantage in intrasexual conflicts over resources.
We tested this hypothesis in a feral population of Soay sheep, in which males
and females have a polymorphism for horn development, producing either full (normal
horned), reduced (scurred) or no (polled, females only) horns. During the lambing
period, females who possessed horns were more likely to initiate and win aggressive
interactions, independent of age, weight and birthing status. The occurrence of
aggression was also context dependent, decreasing over the lambing period and
associated with local density. Our results demonstrate that a trait that confers
benefits to males during intrasexual competition for mates may also be used by
females in intrasexual competition over resources: males use weaponry to gain
mates, whereas females use weaponry to gain food.'
article_processing_charge: No
article_type: original
author:
- first_name: Matthew Richard
full_name: Robinson, Matthew Richard
id: E5D42276-F5DA-11E9-8E24-6303E6697425
last_name: Robinson
orcid: 0000-0001-8982-8813
- first_name: Loeske E.B
full_name: Kruuk, Loeske E.B
last_name: Kruuk
citation:
ama: 'Robinson MR, Kruuk LE. Function of weaponry in females: The use of horns in
intrasexual competition for resources in female Soay sheep. Biology Letters.
2007;3(6):651-654. doi:10.1098/rsbl.2007.0278'
apa: 'Robinson, M. R., & Kruuk, L. E. . (2007). Function of weaponry in females:
The use of horns in intrasexual competition for resources in female Soay sheep.
Biology Letters. The Royal Society. https://doi.org/10.1098/rsbl.2007.0278'
chicago: 'Robinson, Matthew Richard, and Loeske E.B Kruuk. “Function of Weaponry
in Females: The Use of Horns in Intrasexual Competition for Resources in Female
Soay Sheep.” Biology Letters. The Royal Society, 2007. https://doi.org/10.1098/rsbl.2007.0278.'
ieee: 'M. R. Robinson and L. E. . Kruuk, “Function of weaponry in females: The use
of horns in intrasexual competition for resources in female Soay sheep,” Biology
Letters, vol. 3, no. 6. The Royal Society, pp. 651–654, 2007.'
ista: 'Robinson MR, Kruuk LE. 2007. Function of weaponry in females: The use of
horns in intrasexual competition for resources in female Soay sheep. Biology Letters.
3(6), 651–654.'
mla: 'Robinson, Matthew Richard, and Loeske E. .. Kruuk. “Function of Weaponry in
Females: The Use of Horns in Intrasexual Competition for Resources in Female Soay
Sheep.” Biology Letters, vol. 3, no. 6, The Royal Society, 2007, pp. 651–54,
doi:10.1098/rsbl.2007.0278.'
short: M.R. Robinson, L.E.. Kruuk, Biology Letters 3 (2007) 651–654.
date_created: 2020-04-30T11:02:28Z
date_published: 2007-08-21T00:00:00Z
date_updated: 2021-01-12T08:15:18Z
day: '21'
doi: 10.1098/rsbl.2007.0278
extern: '1'
external_id:
pmid:
- '17711817'
intvolume: ' 3'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1098/rsbl.2007.0278
month: '08'
oa: 1
oa_version: Published Version
page: 651-654
pmid: 1
publication: Biology Letters
publication_identifier:
issn:
- 1744-9561
- 1744-957X
publication_status: published
publisher: The Royal Society
quality_controlled: '1'
status: public
title: 'Function of weaponry in females: The use of horns in intrasexual competition
for resources in female Soay sheep'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2007'
...
---
_id: '167'
abstract:
- lang: eng
text: This book contains research articles on Diophantine Geometry, written by participants
of a research program held at the Ennio De Giorgi Mathematical Research Center
in Pisa, Italy, during the period April – July 2005. The authors are eminent experts
in the field. Several subfields of the main topic are presented; the volume thus
is particularly useful to get a broad overview of recent research developments.
alternative_title:
- CRM Series
article_processing_charge: No
arxiv: 1
author:
- first_name: Timothy D
full_name: Browning, Timothy D
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
- first_name: Roger
full_name: Heath Brown, Roger
last_name: Heath Brown
citation:
ama: 'Browning TD, Heath Brown R. Simultaneous equal sums of three powers. In: Zannier
U, ed. Diophantine Geometry. Vol 4. Edizioni della Normale; 2007:93-100.'
apa: Browning, T. D., & Heath Brown, R. (2007). Simultaneous equal sums of three
powers. In U. Zannier (Ed.), Diophantine Geometry (Vol. 4, pp. 93–100).
Edizioni della Normale.
chicago: Browning, Timothy D, and Roger Heath Brown. “Simultaneous Equal Sums of
Three Powers.” In Diophantine Geometry, edited by Umberto Zannier, 4:93–100.
Edizioni della Normale, 2007.
ieee: T. D. Browning and R. Heath Brown, “Simultaneous equal sums of three powers,”
in Diophantine Geometry, vol. 4, U. Zannier, Ed. Edizioni della Normale,
2007, pp. 93–100.
ista: 'Browning TD, Heath Brown R. 2007.Simultaneous equal sums of three powers.
In: Diophantine Geometry. CRM Series, vol. 4, 93–100.'
mla: Browning, Timothy D., and Roger Heath Brown. “Simultaneous Equal Sums of Three
Powers.” Diophantine Geometry, edited by Umberto Zannier, vol. 4, Edizioni
della Normale, 2007, pp. 93–100.
short: T.D. Browning, R. Heath Brown, in:, U. Zannier (Ed.), Diophantine Geometry,
Edizioni della Normale, 2007, pp. 93–100.
date_created: 2018-12-11T11:44:59Z
date_published: 2007-01-01T00:00:00Z
date_updated: 2021-01-12T06:52:24Z
day: '01'
editor:
- first_name: Umberto
full_name: Zannier, Umberto
last_name: Zannier
extern: '1'
external_id:
arxiv:
- '0509152'
intvolume: ' 4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/math/0509152
month: '01'
oa: 1
oa_version: Preprint
page: 93 - 100
publication: Diophantine Geometry
publication_status: published
publisher: Edizioni della Normale
publist_id: '7754'
quality_controlled: '1'
status: public
title: Simultaneous equal sums of three powers
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 4
year: '2007'
...
---
_id: '1762'
abstract:
- lang: eng
text: In quantum information science, the phase of a wave function plays an important
role in encoding information. Although most experiments in this field rely on
dynamic effects to manipulate this information, an alternative approach is to
use geometric phase, which has been argued to have potential fault tolerance.
We demonstrated the controlled accumulation of a geometric phase, Berry's phase,
in a superconducting qubit; we manipulated the qubit geometrically by means of
microwave radiation and observed the accumulated phase in an interference experiment.
We found excellent agreement with Berry's predictions and also observed a geometry-dependent
contribution to dephasing.
acknowledgement: Supported by the EC via an Intra-European Marie Curie Fellowship
(P.J.L.), the Natural Sciences and Engineering Research Council of Canada, Canadian
Institute for Advanced Research, and Fonds Québécois de la Recherche sur la Nature
et les Technologies (A.B.), the National Security Agency under the Army Research
Office, NSF, and Yale University (D.I.S., L.F., and R.J.S.), Consiglio Nazionale
delle Ricerche–Istituto di Cibernetica, Pozzuoli, Italy (L.F.), the Ontario Research
Development Challenge Fund and Mathematics of Information Technology and Complex
Systems (J.M.G.), the Swiss National Science Foundation, and ETH Zürich
author:
- first_name: Peter
full_name: Leek, Peter J
last_name: Leek
- first_name: Johannes M
full_name: Johannes Fink
id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
last_name: Fink
orcid: 0000-0001-8112-028X
- first_name: Alexandre
full_name: Blais, Alexandre
last_name: Blais
- first_name: R
full_name: Bianchetti, R
last_name: Bianchetti
- first_name: M
full_name: Göppl, M
last_name: Göppl
- first_name: Jay
full_name: Gambetta, Jay M
last_name: Gambetta
- first_name: David
full_name: Schuster, David I
last_name: Schuster
- first_name: Luigi
full_name: Frunzio, Luigi
last_name: Frunzio
- first_name: Robert
full_name: Schoelkopf, Robert J
last_name: Schoelkopf
- first_name: Andreas
full_name: Wallraff, Andreas
last_name: Wallraff
citation:
ama: Leek P, Fink JM, Blais A, et al. Observation of Berry’s phase in a solid-state
qubit. Science. 2007;318(5858):1889-1892. doi:10.1126/science.1149858
apa: Leek, P., Fink, J. M., Blais, A., Bianchetti, R., Göppl, M., Gambetta, J.,
… Wallraff, A. (2007). Observation of Berry’s phase in a solid-state qubit. Science.
American Association for the Advancement of Science. https://doi.org/10.1126/science.1149858
chicago: Leek, Peter, Johannes M Fink, Alexandre Blais, R Bianchetti, M Göppl, Jay
Gambetta, David Schuster, Luigi Frunzio, Robert Schoelkopf, and Andreas Wallraff.
“Observation of Berry’s Phase in a Solid-State Qubit.” Science. American
Association for the Advancement of Science, 2007. https://doi.org/10.1126/science.1149858.
ieee: P. Leek et al., “Observation of Berry’s phase in a solid-state qubit,”
Science, vol. 318, no. 5858. American Association for the Advancement of
Science, pp. 1889–1892, 2007.
ista: Leek P, Fink JM, Blais A, Bianchetti R, Göppl M, Gambetta J, Schuster D, Frunzio
L, Schoelkopf R, Wallraff A. 2007. Observation of Berry’s phase in a solid-state
qubit. Science. 318(5858), 1889–1892.
mla: Leek, Peter, et al. “Observation of Berry’s Phase in a Solid-State Qubit.”
Science, vol. 318, no. 5858, American Association for the Advancement of
Science, 2007, pp. 1889–92, doi:10.1126/science.1149858.
short: P. Leek, J.M. Fink, A. Blais, R. Bianchetti, M. Göppl, J. Gambetta, D. Schuster,
L. Frunzio, R. Schoelkopf, A. Wallraff, Science 318 (2007) 1889–1892.
date_created: 2018-12-11T11:53:52Z
date_published: 2007-12-27T00:00:00Z
date_updated: 2021-01-12T06:53:02Z
day: '27'
doi: 10.1126/science.1149858
extern: 1
intvolume: ' 318'
issue: '5858'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/0711.0218
month: '12'
oa: 1
page: 1889 - 1892
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '5360'
quality_controlled: 0
status: public
title: Observation of Berry's phase in a solid-state qubit
type: journal_article
volume: 318
year: '2007'
...
---
_id: '13425'
abstract:
- lang: eng
text: Nanoparticles (NPs) decorated with ligands combining photoswitchable dipoles
and covalent cross-linkers can be assembled by light into organized, three-dimensional
suprastructures of various types and sizes. NPs covered with only few photoactive
ligands form metastable crystals that can be assembled and disassembled “on demand”
by using light of different wavelengths. For higher surface concentrations, self-assembly
is irreversible, and the NPs organize into permanently cross-linked structures
including robust supracrystals and plastic spherical aggregates.
article_processing_charge: No
article_type: original
author:
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
- first_name: Kyle J. M.
full_name: Bishop, Kyle J. M.
last_name: Bishop
- first_name: Bartosz A.
full_name: Grzybowski, Bartosz A.
last_name: Grzybowski
citation:
ama: Klajn R, Bishop KJM, Grzybowski BA. Light-controlled self-assembly of reversible
and irreversible nanoparticle suprastructures. Proceedings of the National
Academy of Sciences. 2007;104(25):10305-10309. doi:10.1073/pnas.0611371104
apa: Klajn, R., Bishop, K. J. M., & Grzybowski, B. A. (2007). Light-controlled
self-assembly of reversible and irreversible nanoparticle suprastructures. Proceedings
of the National Academy of Sciences. Proceedings of the National Academy of
Sciences. https://doi.org/10.1073/pnas.0611371104
chicago: Klajn, Rafal, Kyle J. M. Bishop, and Bartosz A. Grzybowski. “Light-Controlled
Self-Assembly of Reversible and Irreversible Nanoparticle Suprastructures.” Proceedings
of the National Academy of Sciences. Proceedings of the National Academy of
Sciences, 2007. https://doi.org/10.1073/pnas.0611371104.
ieee: R. Klajn, K. J. M. Bishop, and B. A. Grzybowski, “Light-controlled self-assembly
of reversible and irreversible nanoparticle suprastructures,” Proceedings of
the National Academy of Sciences, vol. 104, no. 25. Proceedings of the National
Academy of Sciences, pp. 10305–10309, 2007.
ista: Klajn R, Bishop KJM, Grzybowski BA. 2007. Light-controlled self-assembly of
reversible and irreversible nanoparticle suprastructures. Proceedings of the National
Academy of Sciences. 104(25), 10305–10309.
mla: Klajn, Rafal, et al. “Light-Controlled Self-Assembly of Reversible and Irreversible
Nanoparticle Suprastructures.” Proceedings of the National Academy of Sciences,
vol. 104, no. 25, Proceedings of the National Academy of Sciences, 2007, pp. 10305–09,
doi:10.1073/pnas.0611371104.
short: R. Klajn, K.J.M. Bishop, B.A. Grzybowski, Proceedings of the National Academy
of Sciences 104 (2007) 10305–10309.
date_created: 2023-08-01T10:31:19Z
date_published: 2007-06-19T00:00:00Z
date_updated: 2023-08-08T11:24:51Z
day: '19'
doi: 10.1073/pnas.0611371104
extern: '1'
external_id:
pmid:
- '17563381'
intvolume: ' 104'
issue: '25'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1073/pnas.0611371104
month: '06'
oa: 1
oa_version: Published Version
page: 10305-10309
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
eissn:
- 1091-6490
issn:
- 0027-8424
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Light-controlled self-assembly of reversible and irreversible nanoparticle
suprastructures
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 104
year: '2007'
...
---
_id: '6321'
abstract:
- lang: eng
text: These lecture notes describe the current state of affairs for Manin's conjecture
in the context of del Pezzo surfaces.
article_number: '0704.1217'
article_processing_charge: No
arxiv: 1
author:
- first_name: Timothy D
full_name: Browning, Timothy D
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
citation:
ama: Browning TD. The Manin conjecture in dimension 2. arXiv.
apa: Browning, T. D. (n.d.). The Manin conjecture in dimension 2. arXiv.
chicago: Browning, Timothy D. “The Manin Conjecture in Dimension 2.” ArXiv,
n.d.
ieee: T. D. Browning, “The Manin conjecture in dimension 2,” arXiv. .
ista: Browning TD. The Manin conjecture in dimension 2. arXiv, 0704.1217.
mla: Browning, Timothy D. “The Manin Conjecture in Dimension 2.” ArXiv, 0704.1217.
short: T.D. Browning, ArXiv (n.d.).
date_created: 2019-04-16T14:17:50Z
date_published: 2007-04-10T00:00:00Z
date_updated: 2021-01-12T08:07:04Z
day: '10'
extern: '1'
external_id:
arxiv:
- '0704.1217'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/0704.1217
month: '04'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
status: public
title: The Manin conjecture in dimension 2
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2007'
...
---
_id: '6323'
abstract:
- lang: eng
text: This paper surveys recent progress towards the Manin conjecture for (singular
and non-singular) del Pezzo surfaces. To illustrate some of the techniques available,
an upper bound of the expected order of magnitude is established for a singular
del Pezzo surface of degree four.
alternative_title:
- Clay Mathemetics Proceedings
arxiv: 1
author:
- first_name: Timothy D
full_name: Browning, Timothy D
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
citation:
ama: 'Browning TD. An overview of Manin’s conjecture for del Pezzo surfaces. In:
A Tribute to Gauss and Dirichlet. Vol 7. Analytic Number Theory. American
Mathematical Society; 2007:39-56.'
apa: Browning, T. D. (2007). An overview of Manin’s conjecture for del Pezzo surfaces.
In A Tribute to Gauss and Dirichlet (Vol. 7, pp. 39–56). American Mathematical
Society.
chicago: Browning, Timothy D. “An Overview of Manin’s Conjecture for Del Pezzo Surfaces.”
In A Tribute to Gauss and Dirichlet, 7:39–56. Analytic Number Theory. American
Mathematical Society, 2007.
ieee: T. D. Browning, “An overview of Manin’s conjecture for del Pezzo surfaces,”
in A Tribute to Gauss and Dirichlet, vol. 7, American Mathematical Society,
2007, pp. 39–56.
ista: 'Browning TD. 2007.An overview of Manin’s conjecture for del Pezzo surfaces.
In: A Tribute to Gauss and Dirichlet. Clay Mathemetics Proceedings, vol. 7, 39–56.'
mla: Browning, Timothy D. “An Overview of Manin’s Conjecture for Del Pezzo Surfaces.”
A Tribute to Gauss and Dirichlet, vol. 7, American Mathematical Society,
2007, pp. 39–56.
short: T.D. Browning, in:, A Tribute to Gauss and Dirichlet, American Mathematical
Society, 2007, pp. 39–56.
date_created: 2019-04-16T14:26:12Z
date_published: 2007-01-01T00:00:00Z
date_updated: 2021-01-12T08:07:05Z
extern: '1'
external_id:
arxiv:
- 0511041v2
intvolume: ' 7'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/math/0511041v2
oa: 1
oa_version: Preprint
page: 39-56
publication: A Tribute to Gauss and Dirichlet
publication_status: published
publisher: American Mathematical Society
quality_controlled: '1'
series_title: Analytic Number Theory
status: public
title: An overview of Manin's conjecture for del Pezzo surfaces
type: book_chapter
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2007'
...
---
_id: '1035'
abstract:
- lang: eng
text: We explore the rich internal structure of Cs2 Feshbach molecules. Pure ultracold
molecular samples are prepared in a CO2 -laser trap, and a multitude of weakly
bound states is populated by elaborate magnetic-field ramping techniques. Our
methods use different Feshbach resonances as input ports and various internal
level crossings for controlled state transfer. We populate higher partial-wave
states of up to eight units of rotational angular momentum (l -wave states). We
investigate the molecular structure by measurements of the magnetic moments for
various states. Avoided level crossings between different molecular states are
characterized through the changes in magnetic moment and by a Landau-Zener tunneling
method. Based on microwave spectroscopy, we present a precise measurement of the
magnetic-field-dependent binding energy of the weakly bound s -wave state that
is responsible for the large background scattering length of Cs. This state is
of particular interest because of its quantum-halo character.
acknowledgement: The authors thank E. Tiesinga, P. Julienne, and C. Williams for providing
invaluable theoretical input and J. Hutson and A. Simoni for helpful discussions.
The authors acknowledge support by the Austrian Science Fund (FWF) within SFB 15
(project part 16) and by the European Union within the Cold Molecules TMR Network
under Contract No. HPRN-CT-2002-00290. One of the authors (M.M.) acknowledges support
within the Ph.D. program DOC of the Austrian Academy of Sciences, and two of the
authors (F.F., C.C.) acknowledge support within the Lise Meitner program of the
FWF. One of the authors (S.K.) is supported by the European Community, Marie Curie
Intra-European program.
article_processing_charge: No
author:
- first_name: Michael
full_name: Mark, Michael
last_name: Mark
- first_name: Francesca
full_name: Ferlaino, Francesca
last_name: Ferlaino
- first_name: Steven
full_name: Knoop, Steven
last_name: Knoop
- first_name: Johann G
full_name: Danzl, Johann G
id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
last_name: Danzl
orcid: 0000-0001-8559-3973
- first_name: Tobias
full_name: Kraemer, Tobias
last_name: Kraemer
- first_name: Cheng
full_name: Chin, Cheng
last_name: Chin
- first_name: Hanns
full_name: Nägerl, Hanns
last_name: Nägerl
- first_name: Rudolf
full_name: Grimm, Rudolf
last_name: Grimm
citation:
ama: Mark M, Ferlaino F, Knoop S, et al. Spectroscopy of ultracold trapped cesium
Feshbach molecules. Physical Review A - Atomic, Molecular, and Optical Physics.
2007;76(4). doi:10.1103/PhysRevA.76.042514
apa: Mark, M., Ferlaino, F., Knoop, S., Danzl, J. G., Kraemer, T., Chin, C., … Grimm,
R. (2007). Spectroscopy of ultracold trapped cesium Feshbach molecules. Physical
Review A - Atomic, Molecular, and Optical Physics. American Physical Society.
https://doi.org/10.1103/PhysRevA.76.042514
chicago: Mark, Michael, Francesca Ferlaino, Steven Knoop, Johann G Danzl, Tobias
Kraemer, Cheng Chin, Hanns Nägerl, and Rudolf Grimm. “Spectroscopy of Ultracold
Trapped Cesium Feshbach Molecules.” Physical Review A - Atomic, Molecular,
and Optical Physics. American Physical Society, 2007. https://doi.org/10.1103/PhysRevA.76.042514.
ieee: M. Mark et al., “Spectroscopy of ultracold trapped cesium Feshbach
molecules,” Physical Review A - Atomic, Molecular, and Optical Physics,
vol. 76, no. 4. American Physical Society, 2007.
ista: Mark M, Ferlaino F, Knoop S, Danzl JG, Kraemer T, Chin C, Nägerl H, Grimm
R. 2007. Spectroscopy of ultracold trapped cesium Feshbach molecules. Physical
Review A - Atomic, Molecular, and Optical Physics. 76(4).
mla: Mark, Michael, et al. “Spectroscopy of Ultracold Trapped Cesium Feshbach Molecules.”
Physical Review A - Atomic, Molecular, and Optical Physics, vol. 76, no.
4, American Physical Society, 2007, doi:10.1103/PhysRevA.76.042514.
short: M. Mark, F. Ferlaino, S. Knoop, J.G. Danzl, T. Kraemer, C. Chin, H. Nägerl,
R. Grimm, Physical Review A - Atomic, Molecular, and Optical Physics 76 (2007).
date_created: 2018-12-11T11:49:48Z
date_published: 2007-10-25T00:00:00Z
date_updated: 2021-01-12T06:47:49Z
day: '25'
doi: 10.1103/PhysRevA.76.042514
extern: '1'
intvolume: ' 76'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/0706.1041
month: '10'
oa: 1
oa_version: None
publication: Physical Review A - Atomic, Molecular, and Optical Physics
publication_status: published
publisher: American Physical Society
publist_id: '6354'
status: public
title: Spectroscopy of ultracold trapped cesium Feshbach molecules
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 76
year: '2007'
...
---
_id: '9487'
abstract:
- lang: eng
text: Cytosine DNA methylation is considered to be a stable epigenetic mark, but
active demethylation has been observed in both plants and animals. In Arabidopsis
thaliana, DNA glycosylases of the DEMETER (DME) family remove methylcytosines
from DNA. Demethylation by DME is necessary for genomic imprinting, and demethylation
by a related protein, REPRESSOR OF SILENCING1, prevents gene silencing in a transgenic
background. However, the extent and function of demethylation by DEMETER-LIKE
(DML) proteins in WT plants is not known. Using genome-tiling microarrays, we
mapped DNA methylation in mutant and WT plants and identified 179 loci actively
demethylated by DML enzymes. Mutations in DML genes lead to locus-specific DNA
hypermethylation. Reintroducing WT DML genes restores most loci to the normal
pattern of methylation, although at some loci, hypermethylated epialleles persist.
Of loci demethylated by DML enzymes, >80% are near or overlap genes. Genic demethylation
by DML enzymes primarily occurs at the 5′ and 3′ ends, a pattern opposite to the
overall distribution of WT DNA methylation. Our results show that demethylation
by DML DNA glycosylases edits the patterns of DNA methylation within the Arabidopsis
genome to protect genes from potentially deleterious methylation.
article_processing_charge: No
article_type: original
author:
- first_name: Jon
full_name: Penterman, Jon
last_name: Penterman
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
- first_name: Jin Hoe
full_name: Huh, Jin Hoe
last_name: Huh
- first_name: Tracy
full_name: Ballinger, Tracy
last_name: Ballinger
- first_name: Steven
full_name: Henikoff, Steven
last_name: Henikoff
- first_name: Robert L.
full_name: Fischer, Robert L.
last_name: Fischer
citation:
ama: Penterman J, Zilberman D, Huh JH, Ballinger T, Henikoff S, Fischer RL. DNA
demethylation in the Arabidopsis genome. Proceedings of the National Academy
of Sciences. 2007;104(16):6752-6757. doi:10.1073/pnas.0701861104
apa: Penterman, J., Zilberman, D., Huh, J. H., Ballinger, T., Henikoff, S., &
Fischer, R. L. (2007). DNA demethylation in the Arabidopsis genome. Proceedings
of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.0701861104
chicago: Penterman, Jon, Daniel Zilberman, Jin Hoe Huh, Tracy Ballinger, Steven
Henikoff, and Robert L. Fischer. “DNA Demethylation in the Arabidopsis Genome.”
Proceedings of the National Academy of Sciences. National Academy of Sciences,
2007. https://doi.org/10.1073/pnas.0701861104.
ieee: J. Penterman, D. Zilberman, J. H. Huh, T. Ballinger, S. Henikoff, and R. L.
Fischer, “DNA demethylation in the Arabidopsis genome,” Proceedings of the
National Academy of Sciences, vol. 104, no. 16. National Academy of Sciences,
pp. 6752–6757, 2007.
ista: Penterman J, Zilberman D, Huh JH, Ballinger T, Henikoff S, Fischer RL. 2007.
DNA demethylation in the Arabidopsis genome. Proceedings of the National Academy
of Sciences. 104(16), 6752–6757.
mla: Penterman, Jon, et al. “DNA Demethylation in the Arabidopsis Genome.” Proceedings
of the National Academy of Sciences, vol. 104, no. 16, National Academy of
Sciences, 2007, pp. 6752–57, doi:10.1073/pnas.0701861104.
short: J. Penterman, D. Zilberman, J.H. Huh, T. Ballinger, S. Henikoff, R.L. Fischer,
Proceedings of the National Academy of Sciences 104 (2007) 6752–6757.
date_created: 2021-06-07T09:38:21Z
date_published: 2007-04-17T00:00:00Z
date_updated: 2021-12-14T08:55:12Z
day: '17'
department:
- _id: DaZi
doi: 10.1073/pnas.0701861104
extern: '1'
external_id:
pmid:
- '17409185'
intvolume: ' 104'
issue: '16'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1073/pnas.0701861104
month: '04'
oa: 1
oa_version: Published Version
page: 6752-6757
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
eissn:
- 1091-6490
issn:
- 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: DNA demethylation in the Arabidopsis genome
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 104
year: '2007'
...
---
_id: '9524'
abstract:
- lang: eng
text: Cytosine methylation is the most common covalent modification of DNA in eukaryotes.
DNA methylation has an important role in many aspects of biology, including development
and disease. Methylation can be detected using bisulfite conversion, methylation-sensitive
restriction enzymes, methyl-binding proteins and anti-methylcytosine antibodies.
Combining these techniques with DNA microarrays and high-throughput sequencing
has made the mapping of DNA methylation feasible on a genome-wide scale. Here
we discuss recent developments and future directions for identifying and mapping
methylation, in an effort to help colleagues to identify the approaches that best
serve their research interests.
article_processing_charge: No
article_type: review
author:
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
- first_name: Steven
full_name: Henikoff, Steven
last_name: Henikoff
citation:
ama: Zilberman D, Henikoff S. Genome-wide analysis of DNA methylation patterns.
Development. 2007;134(22):3959-3965. doi:10.1242/dev.001131
apa: Zilberman, D., & Henikoff, S. (2007). Genome-wide analysis of DNA methylation
patterns. Development. The Company of Biologists. https://doi.org/10.1242/dev.001131
chicago: Zilberman, Daniel, and Steven Henikoff. “Genome-Wide Analysis of DNA Methylation
Patterns.” Development. The Company of Biologists, 2007. https://doi.org/10.1242/dev.001131.
ieee: D. Zilberman and S. Henikoff, “Genome-wide analysis of DNA methylation patterns,”
Development, vol. 134, no. 22. The Company of Biologists, pp. 3959–3965,
2007.
ista: Zilberman D, Henikoff S. 2007. Genome-wide analysis of DNA methylation patterns.
Development. 134(22), 3959–3965.
mla: Zilberman, Daniel, and Steven Henikoff. “Genome-Wide Analysis of DNA Methylation
Patterns.” Development, vol. 134, no. 22, The Company of Biologists, 2007,
pp. 3959–65, doi:10.1242/dev.001131.
short: D. Zilberman, S. Henikoff, Development 134 (2007) 3959–3965.
date_created: 2021-06-08T06:29:50Z
date_published: 2007-11-15T00:00:00Z
date_updated: 2021-12-14T08:57:58Z
day: '15'
department:
- _id: DaZi
doi: 10.1242/dev.001131
extern: '1'
external_id:
pmid:
- '17928417'
intvolume: ' 134'
issue: '22'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1242/dev.001131
month: '11'
oa: 1
oa_version: Published Version
page: 3959-3965
pmid: 1
publication: Development
publication_identifier:
eissn:
- 1477-9129
issn:
- 0950-1991
publication_status: published
publisher: The Company of Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: Genome-wide analysis of DNA methylation patterns
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 134
year: '2007'
...
---
_id: '3411'
abstract:
- lang: eng
text: Mechanical single-molecule techniques offer exciting possibilities to investigate
protein folding and stability in native environments at submolecular resolution.
By applying a free-energy reconstruction procedure developed by Hummer and Szabo,
which is based on a statistical theorem introduced by Jarzynski, we determined
the unfolding free energy of the membrane proteins bacteriorhodopsin (BR), halorhodopsin,
and the sodium-proton antiporter NhaA. The calculated energies ranged from 290.5kcal/mol
for BR to 485.5kcal/mol for NhaA. For the remarkably stable BR, the equilibrium
unfolding free energy was independent of pulling rate and temperature ranging
between 18 and 42°C. Our experiments also revealed heterogeneous energetic properties
in individual transmembrane helices. In halorhodopsin, the stabilization of a
short helical segment yielded a characteristic signature in the energy profile.
In NhaA, a pronounced peak was observed at a functionally important site in the
protein. Since a large variety of single- and multispan membrane proteins can
be tackled in mechanical unfolding experiments, our approach provides a basis
for systematically elucidating energetic properties of membrane proteins with
the resolution of individual secondary-structure elements.
author:
- first_name: Johannes
full_name: Preiner, Johannes
last_name: Preiner
- first_name: Harald L
full_name: Harald Janovjak
id: 33BA6C30-F248-11E8-B48F-1D18A9856A87
last_name: Janovjak
orcid: 0000-0002-8023-9315
- first_name: Christian
full_name: Rankl, Christian
last_name: Rankl
- first_name: Helene
full_name: Knaus, Helene
last_name: Knaus
- first_name: David
full_name: Cisneros, David A
last_name: Cisneros
- first_name: Alexej
full_name: Kedrov, Alexej
last_name: Kedrov
- first_name: Ferry
full_name: Kienberger, Ferry
last_name: Kienberger
- first_name: Daniel
full_name: Mueller, Daniel J
last_name: Mueller
- first_name: Peter
full_name: Hinterdorfer, Peter
last_name: Hinterdorfer
citation:
ama: Preiner J, Janovjak HL, Rankl C, et al. Free energy of membrane protein unfolding
derived from single-molecule force measurements. Biophysical Journal. 2007;93(3):930-937.
doi:10.1529/biophysj.106.096982
apa: Preiner, J., Janovjak, H. L., Rankl, C., Knaus, H., Cisneros, D., Kedrov, A.,
… Hinterdorfer, P. (2007). Free energy of membrane protein unfolding derived from
single-molecule force measurements. Biophysical Journal. Biophysical Society.
https://doi.org/10.1529/biophysj.106.096982
chicago: Preiner, Johannes, Harald L Janovjak, Christian Rankl, Helene Knaus, David
Cisneros, Alexej Kedrov, Ferry Kienberger, Daniel Mueller, and Peter Hinterdorfer.
“Free Energy of Membrane Protein Unfolding Derived from Single-Molecule Force
Measurements.” Biophysical Journal. Biophysical Society, 2007. https://doi.org/10.1529/biophysj.106.096982.
ieee: J. Preiner et al., “Free energy of membrane protein unfolding derived
from single-molecule force measurements,” Biophysical Journal, vol. 93,
no. 3. Biophysical Society, pp. 930–937, 2007.
ista: Preiner J, Janovjak HL, Rankl C, Knaus H, Cisneros D, Kedrov A, Kienberger
F, Mueller D, Hinterdorfer P. 2007. Free energy of membrane protein unfolding
derived from single-molecule force measurements. Biophysical Journal. 93(3), 930–937.
mla: Preiner, Johannes, et al. “Free Energy of Membrane Protein Unfolding Derived
from Single-Molecule Force Measurements.” Biophysical Journal, vol. 93,
no. 3, Biophysical Society, 2007, pp. 930–37, doi:10.1529/biophysj.106.096982.
short: J. Preiner, H.L. Janovjak, C. Rankl, H. Knaus, D. Cisneros, A. Kedrov, F.
Kienberger, D. Mueller, P. Hinterdorfer, Biophysical Journal 93 (2007) 930–937.
date_created: 2018-12-11T12:03:11Z
date_published: 2007-08-01T00:00:00Z
date_updated: 2021-01-12T07:43:18Z
day: '01'
doi: 10.1529/biophysj.106.096982
extern: 1
intvolume: ' 93'
issue: '3'
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1913163/
month: '08'
oa: 1
page: 930 - 937
publication: Biophysical Journal
publication_status: published
publisher: Biophysical Society
publist_id: '2990'
quality_controlled: 0
status: public
title: Free energy of membrane protein unfolding derived from single-molecule force
measurements
type: journal_article
volume: 93
year: '2007'
...
---
_id: '3427'
abstract:
- lang: eng
text: "We present a general theoretical framework to discuss mechanisms of morphogen
transport and gradient formation in a cell layer. Trafficking events on the cellular
scale lead to transport on larger scales. We discuss in particular the case of
transcytosis where morphogens undergo repeated rounds of internalization into
cells and recycling. Based on a description on the cellular scale, we derive effective
nonlinear transport equations in one and two dimensions which are valid on larger
scales. We derive analytic expressions for the concentration dependence of the
effective diffusion coefficient and the effective degradation rate. We discuss
the effects of a directional bias on morphogen transport and those of the coupling
of the morphogen and receptor kinetics. Furthermore, we discuss general properties
of cellular transport processes such as the robustness of gradients and relate
our results to recent experiments on the morphogen Decapentaplegic (Dpp) that
acts in the wing disk of the fruit fly Drosophila.\r\n© 2007 The American Physical
Society"
article_processing_charge: No
arxiv: 1
author:
- first_name: Mark Tobias
full_name: Bollenbach, Mark Tobias
id: 3E6DB97A-F248-11E8-B48F-1D18A9856A87
last_name: Bollenbach
orcid: 0000-0003-4398-476X
- first_name: Karsten
full_name: Kruse, Karsten
last_name: Kruse
- first_name: Periklis
full_name: Pantazis, Periklis
last_name: Pantazis
- first_name: Marcos
full_name: Gonzalez Gaitan, Marcos
last_name: Gonzalez Gaitan
- first_name: Frank
full_name: Julicher, Frank
last_name: Julicher
citation:
ama: Bollenbach MT, Kruse K, Pantazis P, Gonzalez Gaitan M, Julicher F. Morphogen
transport in epithelia. Physical Review E Statistical Nonlinear and Soft Matter
Physics. 2007;75(1). doi:10.1103/PhysRevE.75.011901
apa: Bollenbach, M. T., Kruse, K., Pantazis, P., Gonzalez Gaitan, M., & Julicher,
F. (2007). Morphogen transport in epithelia. Physical Review E Statistical
Nonlinear and Soft Matter Physics. American Institute of Physics. https://doi.org/10.1103/PhysRevE.75.011901
chicago: Bollenbach, Mark Tobias, Karsten Kruse, Periklis Pantazis, Marcos Gonzalez
Gaitan, and Frank Julicher. “Morphogen Transport in Epithelia.” Physical Review
E Statistical Nonlinear and Soft Matter Physics. American Institute of Physics,
2007. https://doi.org/10.1103/PhysRevE.75.011901.
ieee: M. T. Bollenbach, K. Kruse, P. Pantazis, M. Gonzalez Gaitan, and F. Julicher,
“Morphogen transport in epithelia,” Physical Review E Statistical Nonlinear
and Soft Matter Physics, vol. 75, no. 1. American Institute of Physics, 2007.
ista: Bollenbach MT, Kruse K, Pantazis P, Gonzalez Gaitan M, Julicher F. 2007. Morphogen
transport in epithelia. Physical Review E Statistical Nonlinear and Soft Matter
Physics. 75(1).
mla: Bollenbach, Mark Tobias, et al. “Morphogen Transport in Epithelia.” Physical
Review E Statistical Nonlinear and Soft Matter Physics, vol. 75, no. 1, American
Institute of Physics, 2007, doi:10.1103/PhysRevE.75.011901.
short: M.T. Bollenbach, K. Kruse, P. Pantazis, M. Gonzalez Gaitan, F. Julicher,
Physical Review E Statistical Nonlinear and Soft Matter Physics 75 (2007).
date_created: 2018-12-11T12:03:16Z
date_published: 2007-01-01T00:00:00Z
date_updated: 2021-01-12T07:43:24Z
day: '01'
doi: 10.1103/PhysRevE.75.011901
extern: '1'
external_id:
arxiv:
- q-bio/0609011v1
intvolume: ' 75'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/q-bio/0609011v1
month: '01'
oa: 1
oa_version: Preprint
publication: Physical Review E Statistical Nonlinear and Soft Matter Physics
publication_status: published
publisher: American Institute of Physics
publist_id: '2974'
status: public
title: Morphogen transport in epithelia
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 75
year: '2007'
...
---
_id: '3561'
abstract:
- lang: eng
text: The main result of this paper is an extension of de Silva's Weak Delaunay
Theorem to smoothly embedded curves and surfaces in Euclidean space. Assuming
a sufficiently fine sampling, we prove that i + 1 points in the sample span an
i-simplex in the restricted Delaunay triangulation iff every subset of the i +
1 points has a weak witness.
author:
- first_name: Dominique
full_name: Attali, Dominique
last_name: Attali
- first_name: Herbert
full_name: Herbert Edelsbrunner
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Yuriy
full_name: Mileyko, Yuriy
last_name: Mileyko
citation:
ama: 'Attali D, Edelsbrunner H, Mileyko Y. Weak witnesses for Delaunay triangulations
of submanifolds. In: ACM; 2007:143-150. doi:10.1145/1236246.1236267'
apa: 'Attali, D., Edelsbrunner, H., & Mileyko, Y. (2007). Weak witnesses for
Delaunay triangulations of submanifolds (pp. 143–150). Presented at the SPM: Symposium
on Solid and Physical Modeling, ACM. https://doi.org/10.1145/1236246.1236267'
chicago: Attali, Dominique, Herbert Edelsbrunner, and Yuriy Mileyko. “Weak Witnesses
for Delaunay Triangulations of Submanifolds,” 143–50. ACM, 2007. https://doi.org/10.1145/1236246.1236267.
ieee: 'D. Attali, H. Edelsbrunner, and Y. Mileyko, “Weak witnesses for Delaunay
triangulations of submanifolds,” presented at the SPM: Symposium on Solid and
Physical Modeling, 2007, pp. 143–150.'
ista: 'Attali D, Edelsbrunner H, Mileyko Y. 2007. Weak witnesses for Delaunay triangulations
of submanifolds. SPM: Symposium on Solid and Physical Modeling, 143–150.'
mla: Attali, Dominique, et al. Weak Witnesses for Delaunay Triangulations of
Submanifolds. ACM, 2007, pp. 143–50, doi:10.1145/1236246.1236267.
short: D. Attali, H. Edelsbrunner, Y. Mileyko, in:, ACM, 2007, pp. 143–150.
conference:
name: 'SPM: Symposium on Solid and Physical Modeling'
date_created: 2018-12-11T12:03:58Z
date_published: 2007-06-01T00:00:00Z
date_updated: 2021-01-12T07:44:19Z
day: '01'
doi: 10.1145/1236246.1236267
extern: 1
main_file_link:
- open_access: '1'
url: https://hal.archives-ouvertes.fr/hal-00201055
month: '06'
oa: 1
page: 143 - 150
publication_status: published
publisher: ACM
publist_id: '2824'
quality_controlled: 0
status: public
title: Weak witnesses for Delaunay triangulations of submanifolds
type: conference
year: '2007'
...