---
_id: '4346'
abstract:
- lang: eng
text: With the term "Library 2.0" the editors mean an institution which applies
the principles of the Web 2.0 such as openness, re-use, collaboration and interaction
in the entire organization. Libraries are extending their service offerings and
work processes to include the potential of Web 2.0 technologies. This changes
the job description and self-image of librarians. The collective volume offers
a complete overview of the topic Library 2.0 and the current state of developments
from a technological, sociological, information theoretical and practice-oriented
perspective.
alternative_title:
- Bibliotheks- und Informationspraxis
article_processing_charge: No
citation:
ama: Danowski P, Bergmann J, eds. Handbuch Bibliothek 2.0. Vol 41. De Gruyter;
2010. doi:10.1515/9783110232103
apa: Danowski, P., & Bergmann, J. (Eds.). (2010). Handbuch Bibliothek 2.0
(Vol. 41). De Gruyter. https://doi.org/10.1515/9783110232103
chicago: Danowski, Patrick, and Julia Bergmann, eds. Handbuch Bibliothek 2.0.
Vol. 41. Bibliothekspraxis. De Gruyter, 2010. https://doi.org/10.1515/9783110232103.
ieee: P. Danowski and J. Bergmann, Eds., Handbuch Bibliothek 2.0, vol. 41.
De Gruyter, 2010.
ista: Danowski P, Bergmann J eds. 2010. Handbuch Bibliothek 2.0, De Gruyter, 405p.
mla: Danowski, Patrick, and Julia Bergmann, editors. Handbuch Bibliothek 2.0.
Vol. 41, De Gruyter, 2010, doi:10.1515/9783110232103.
short: P. Danowski, J. Bergmann, eds., Handbuch Bibliothek 2.0, De Gruyter, 2010.
date_created: 2018-12-11T12:08:23Z
date_published: 2010-09-01T00:00:00Z
date_updated: 2021-12-22T14:41:57Z
day: '01'
department:
- _id: E-Lib
doi: 10.1515/9783110232103
editor:
- first_name: Patrick
full_name: Danowski, Patrick
id: 2EBD1598-F248-11E8-B48F-1D18A9856A87
last_name: Danowski
orcid: 0000-0002-6026-4409
- first_name: Julia
full_name: Bergmann, Julia
last_name: Bergmann
language:
- iso: ger
main_file_link:
- open_access: '1'
url: https://www.degruyter.com/document/doi/10.1515/9783110232103/html
month: '09'
oa: 1
oa_version: Published Version
page: '405'
publication_identifier:
eisbn:
- 9-783-1102-3210-3
isbn:
- 9-783-1102-3209-7
publication_status: published
publisher: De Gruyter
publist_id: '1228'
quality_controlled: '1'
series_title: Bibliothekspraxis
status: public
title: Handbuch Bibliothek 2.0
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: book_editor
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: ' 41'
year: '2010'
...
---
_id: '4361'
abstract:
- lang: eng
text: Depth-bounded processes form the most expressive known fragment of the π-calculus
for which interesting verification problems are still decidable. In this paper
we develop an adequate domain of limits for the well-structured transition systems
that are induced by depth-bounded processes. An immediate consequence of our result
is that there exists a forward algorithm that decides the covering problem for
this class. Unlike backward algorithms, the forward algorithm terminates even
if the depth of the process is not known a priori. More importantly, our result
suggests a whole spectrum of forward algorithms that enable the effective verification
of a large class of mobile systems.
alternative_title:
- LNCS
author:
- first_name: Thomas
full_name: Wies, Thomas
id: 447BFB88-F248-11E8-B48F-1D18A9856A87
last_name: Wies
- first_name: Damien
full_name: Zufferey, Damien
id: 4397AC76-F248-11E8-B48F-1D18A9856A87
last_name: Zufferey
orcid: 0000-0002-3197-8736
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
citation:
ama: 'Wies T, Zufferey D, Henzinger TA. Forward analysis of depth-bounded processes.
In: Ong L, ed. Vol 6014. Springer; 2010:94-108. doi:10.1007/978-3-642-12032-9_8'
apa: 'Wies, T., Zufferey, D., & Henzinger, T. A. (2010). Forward analysis of
depth-bounded processes. In L. Ong (Ed.) (Vol. 6014, pp. 94–108). Presented at
the FoSSaCS: Foundations of Software Science and Computation Structures, Paphos,
Cyprus: Springer. https://doi.org/10.1007/978-3-642-12032-9_8'
chicago: Wies, Thomas, Damien Zufferey, and Thomas A Henzinger. “Forward Analysis
of Depth-Bounded Processes.” edited by Luke Ong, 6014:94–108. Springer, 2010.
https://doi.org/10.1007/978-3-642-12032-9_8.
ieee: 'T. Wies, D. Zufferey, and T. A. Henzinger, “Forward analysis of depth-bounded
processes,” presented at the FoSSaCS: Foundations of Software Science and Computation
Structures, Paphos, Cyprus, 2010, vol. 6014, pp. 94–108.'
ista: 'Wies T, Zufferey D, Henzinger TA. 2010. Forward analysis of depth-bounded
processes. FoSSaCS: Foundations of Software Science and Computation Structures,
LNCS, vol. 6014, 94–108.'
mla: Wies, Thomas, et al. Forward Analysis of Depth-Bounded Processes. Edited
by Luke Ong, vol. 6014, Springer, 2010, pp. 94–108, doi:10.1007/978-3-642-12032-9_8.
short: T. Wies, D. Zufferey, T.A. Henzinger, in:, L. Ong (Ed.), Springer, 2010,
pp. 94–108.
conference:
end_date: 2010-03-28
location: Paphos, Cyprus
name: 'FoSSaCS: Foundations of Software Science and Computation Structures'
start_date: 2010-03-20
date_created: 2018-12-11T12:08:27Z
date_published: 2010-03-01T00:00:00Z
date_updated: 2023-09-07T11:36:36Z
day: '01'
ddc:
- '004'
department:
- _id: ToHe
doi: 10.1007/978-3-642-12032-9_8
editor:
- first_name: Luke
full_name: Ong, Luke
last_name: Ong
file:
- access_level: open_access
checksum: 3e610de84937d821316362658239134a
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:08:17Z
date_updated: 2020-07-14T12:46:27Z
file_id: '4677'
file_name: IST-2012-50-v1+1_Forward_analysis_of_depth-bounded_processes.pdf
file_size: 240766
relation: main_file
file_date_updated: 2020-07-14T12:46:27Z
has_accepted_license: '1'
intvolume: ' 6014'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Submitted Version
page: 94 - 108
publication_status: published
publisher: Springer
publist_id: '1099'
pubrep_id: '50'
quality_controlled: '1'
related_material:
record:
- id: '1405'
relation: dissertation_contains
status: public
scopus_import: 1
status: public
title: Forward analysis of depth-bounded processes
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 6014
year: '2010'
...
---
_id: '4369'
abstract:
- lang: eng
text: In this paper we propose a novel technique for constructing timed automata
from properties expressed in the logic mtl, under bounded-variability assumptions.
We handle full mtl and include all future operators. Our construction is based
on separation of the continuous time monitoring of the input sequence and discrete
predictions regarding the future. The separation of the continuous from the discrete
allows us to determinize our automata in an exponential construction that does
not increase the number of clocks. This leads to a doubly exponential construction
from mtl to deterministic timed automata, compared with triply exponential using
existing approaches. We offer an alternative to the existing approach to linear
real-time model checking, which has never been implemented. It further offers
a unified framework for model checking, runtime monitoring, and synthesis, in
an approach that can reuse tools, implementations, and insights from the discrete
setting.
alternative_title:
- LNCS
author:
- first_name: Dejan
full_name: Nickovic, Dejan
id: 41BCEE5C-F248-11E8-B48F-1D18A9856A87
last_name: Nickovic
- first_name: Nir
full_name: Piterman, Nir
last_name: Piterman
citation:
ama: 'Nickovic D, Piterman N. From MTL to deterministic timed automata. In: Henzinger
TA, Chatterjee K, eds. Vol 6246. Springer; 2010:152-167. doi:10.1007/978-3-642-15297-9_13'
apa: 'Nickovic, D., & Piterman, N. (2010). From MTL to deterministic timed automata.
In T. A. Henzinger & K. Chatterjee (Eds.) (Vol. 6246, pp. 152–167). Presented
at the FORMATS: Formal Modeling and Analysis of Timed Systems, Klosterneuburg,
Austria: Springer. https://doi.org/10.1007/978-3-642-15297-9_13'
chicago: Nickovic, Dejan, and Nir Piterman. “From MTL to Deterministic Timed Automata.”
edited by Thomas A. Henzinger and Krishnendu Chatterjee, 6246:152–67. Springer,
2010. https://doi.org/10.1007/978-3-642-15297-9_13.
ieee: 'D. Nickovic and N. Piterman, “From MTL to deterministic timed automata,”
presented at the FORMATS: Formal Modeling and Analysis of Timed Systems, Klosterneuburg,
Austria, 2010, vol. 6246, pp. 152–167.'
ista: 'Nickovic D, Piterman N. 2010. From MTL to deterministic timed automata. FORMATS:
Formal Modeling and Analysis of Timed Systems, LNCS, vol. 6246, 152–167.'
mla: Nickovic, Dejan, and Nir Piterman. From MTL to Deterministic Timed Automata.
Edited by Thomas A. Henzinger and Krishnendu Chatterjee, vol. 6246, Springer,
2010, pp. 152–67, doi:10.1007/978-3-642-15297-9_13.
short: D. Nickovic, N. Piterman, in:, T.A. Henzinger, K. Chatterjee (Eds.), Springer,
2010, pp. 152–167.
conference:
end_date: 2010-09-10
location: Klosterneuburg, Austria
name: 'FORMATS: Formal Modeling and Analysis of Timed Systems'
start_date: 2010-09-08
date_created: 2018-12-11T12:08:30Z
date_published: 2010-09-08T00:00:00Z
date_updated: 2021-01-12T07:56:27Z
day: '08'
ddc:
- '004'
department:
- _id: ToHe
doi: 10.1007/978-3-642-15297-9_13
ec_funded: 1
editor:
- first_name: Thomas A.
full_name: Henzinger, Thomas A.
last_name: Henzinger
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
last_name: Chatterjee
file:
- access_level: open_access
checksum: b0ca5f5fbe8a3d20ccbc6f51a344a459
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:13:43Z
date_updated: 2020-07-14T12:46:27Z
file_id: '5028'
file_name: IST-2012-49-v1+1_From_MTL_to_deterministic_timed_automata.pdf
file_size: 249789
relation: main_file
file_date_updated: 2020-07-14T12:46:27Z
has_accepted_license: '1'
intvolume: ' 6246'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Submitted Version
page: 152 - 167
project:
- _id: 25EFB36C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '215543'
name: COMponent-Based Embedded Systems design Techniques
- _id: 25F1337C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '214373'
name: Design for Embedded Systems
publication_status: published
publisher: Springer
publist_id: '1090'
pubrep_id: '49'
quality_controlled: '1'
scopus_import: 1
status: public
title: From MTL to deterministic timed automata
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 6246
year: '2010'
...
---
_id: '4378'
abstract:
- lang: eng
text: 'Techniques such as verification condition generation, predicate abstraction,
and expressive type systems reduce software verification to proving formulas in
expressive logics. Programs and their specifications often make use of data structures
such as sets, multisets, algebraic data types, or graphs. Consequently, formulas
generated from verification also involve such data structures. To automate the
proofs of such formulas we propose a logic (a “calculus”) of such data structures.
We build the calculus by starting from decidable logics of individual data structures,
and connecting them through functions and sets, in ways that go beyond the frameworks
such as Nelson-Oppen. The result are new decidable logics that can simultaneously
specify properties of different kinds of data structures and overcome the limitations
of the individual logics. Several of our decidable logics include abstraction
functions that map a data structure into its more abstract view (a tree into a
multiset, a multiset into a set), into a numerical quantity (the size or the height),
or into the truth value of a candidate data structure invariant (sortedness, or
the heap property). For algebraic data types, we identify an asymptotic many-to-one
condition on the abstraction function that guarantees the existence of a decision
procedure. In addition to the combination based on abstraction functions, we can
combine multiple data structure theories if they all reduce to the same data structure
logic. As an instance of this approach, we describe a decidable logic whose formulas
are propositional combinations of formulas in: weak monadic second-order logic
of two successors, two-variable logic with counting, multiset algebra with Presburger
arithmetic, the Bernays-Schönfinkel-Ramsey class of first-order logic, and the
logic of algebraic data types with the set content function. The subformulas in
this combination can share common variables that refer to sets of objects along
with the common set algebra operations. Such sound and complete combination is
possible because the relations on sets definable in the component logics are all
expressible in Boolean Algebra with Presburger Arithmetic. Presburger arithmetic
and its new extensions play an important role in our decidability results. In
several cases, when we combine logics that belong to NP, we can prove the satisfiability
for the combined logic is still in NP.'
alternative_title:
- LNCS
author:
- first_name: Viktor
full_name: Kuncak, Viktor
last_name: Kuncak
- first_name: Ruzica
full_name: Piskac, Ruzica
last_name: Piskac
- first_name: Philippe
full_name: Suter, Philippe
last_name: Suter
- first_name: Thomas
full_name: Wies, Thomas
id: 447BFB88-F248-11E8-B48F-1D18A9856A87
last_name: Wies
citation:
ama: 'Kuncak V, Piskac R, Suter P, Wies T. Building a calculus of data structures.
In: Barthe G, Hermenegildo M, eds. Vol 5944. Springer; 2010:26-44. doi:10.1007/978-3-642-11319-2_6'
apa: 'Kuncak, V., Piskac, R., Suter, P., & Wies, T. (2010). Building a calculus
of data structures. In G. Barthe & M. Hermenegildo (Eds.) (Vol. 5944, pp.
26–44). Presented at the VMCAI: Verification, Model Checking and Abstract Interpretation,
Madrid, Spain: Springer. https://doi.org/10.1007/978-3-642-11319-2_6'
chicago: Kuncak, Viktor, Ruzica Piskac, Philippe Suter, and Thomas Wies. “Building
a Calculus of Data Structures.” edited by Gilles Barthe and Manuel Hermenegildo,
5944:26–44. Springer, 2010. https://doi.org/10.1007/978-3-642-11319-2_6.
ieee: 'V. Kuncak, R. Piskac, P. Suter, and T. Wies, “Building a calculus of data
structures,” presented at the VMCAI: Verification, Model Checking and Abstract
Interpretation, Madrid, Spain, 2010, vol. 5944, pp. 26–44.'
ista: 'Kuncak V, Piskac R, Suter P, Wies T. 2010. Building a calculus of data structures.
VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS, vol. 5944,
26–44.'
mla: Kuncak, Viktor, et al. Building a Calculus of Data Structures. Edited
by Gilles Barthe and Manuel Hermenegildo, vol. 5944, Springer, 2010, pp. 26–44,
doi:10.1007/978-3-642-11319-2_6.
short: V. Kuncak, R. Piskac, P. Suter, T. Wies, in:, G. Barthe, M. Hermenegildo
(Eds.), Springer, 2010, pp. 26–44.
conference:
end_date: 2010-01-19
location: Madrid, Spain
name: 'VMCAI: Verification, Model Checking and Abstract Interpretation'
start_date: 2010-01-17
date_created: 2018-12-11T12:08:33Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2021-01-12T07:56:31Z
day: '01'
department:
- _id: ToHe
doi: 10.1007/978-3-642-11319-2_6
editor:
- first_name: Gilles
full_name: Barthe, Gilles
last_name: Barthe
- first_name: Manuel
full_name: Hermenegildo, Manuel
last_name: Hermenegildo
intvolume: ' 5944'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://infoscience.epfl.ch/record/161290/
month: '01'
oa: 1
oa_version: Submitted Version
page: 26 - 44
publication_status: published
publisher: Springer
publist_id: '1081'
quality_controlled: '1'
scopus_import: 1
status: public
title: Building a calculus of data structures
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 5944
year: '2010'
...
---
_id: '4379'
abstract:
- lang: eng
text: |
The formal specification component of verification can be exported to simulation through the idea of property checkers. The essence of this approach is the automatic construction of an observer from the specification in the form of a program that can be interfaced with a simulator and alert the user if the property is violated by a simulation trace. Although not complete, this lighter approach to formal verification has been effectively used in software and digital hardware to detect errors. Recently, the idea of property checkers has been extended to analog and mixed-signal systems.
In this paper, we apply the property-based checking methodology to an industrial and realistic example of a DDR2 memory interface. The properties describing the DDR2 analog behavior are expressed in the formal specification language stl/psl in form of assertions. The simulation traces generated from an actual DDR2 interface design are checked with respect to the stl/psl assertions using the amt tool. The focus of this paper is on the translation of the official (informal and descriptive) specification of two non-trivial DDR2 properties into stl/psl assertions. We study both the benefits and the current limits of such approach.
acknowledgement: We would like to thank Tom Giovannini from Rambus, Inc. for his detailed
explana- tions of the DDR2 specification and for providing us with simulation traces.
We would also like to thank Oded Maler from Verimag for discussions on the STL/PSL
language and its extensions.
author:
- first_name: Kevin
full_name: Jones, Kevin D
last_name: Jones
- first_name: Victor
full_name: Konrad,Victor
last_name: Konrad
- first_name: Dejan
full_name: Dejan Nickovic
id: 41BCEE5C-F248-11E8-B48F-1D18A9856A87
last_name: Nickovic
citation:
ama: 'Jones K, Konrad V, Nickovic D. Analog property checkers: a DDR2 case study.
Formal Methods in System Design. 2010;36(2):114-130. doi:10.1007/s10703-009-0085-x'
apa: 'Jones, K., Konrad, V., & Nickovic, D. (2010). Analog property checkers:
a DDR2 case study. Formal Methods in System Design. Springer. https://doi.org/10.1007/s10703-009-0085-x'
chicago: 'Jones, Kevin, Victor Konrad, and Dejan Nickovic. “Analog Property Checkers:
A DDR2 Case Study.” Formal Methods in System Design. Springer, 2010. https://doi.org/10.1007/s10703-009-0085-x.'
ieee: 'K. Jones, V. Konrad, and D. Nickovic, “Analog property checkers: a DDR2 case
study,” Formal Methods in System Design, vol. 36, no. 2. Springer, pp.
114–130, 2010.'
ista: 'Jones K, Konrad V, Nickovic D. 2010. Analog property checkers: a DDR2 case
study. Formal Methods in System Design. 36(2), 114–130.'
mla: 'Jones, Kevin, et al. “Analog Property Checkers: A DDR2 Case Study.” Formal
Methods in System Design, vol. 36, no. 2, Springer, 2010, pp. 114–30, doi:10.1007/s10703-009-0085-x.'
short: K. Jones, V. Konrad, D. Nickovic, Formal Methods in System Design 36 (2010)
114–130.
date_created: 2018-12-11T12:08:33Z
date_published: 2010-06-01T00:00:00Z
date_updated: 2021-01-12T07:56:31Z
day: '01'
doi: 10.1007/s10703-009-0085-x
extern: 1
intvolume: ' 36'
issue: '2'
main_file_link:
- open_access: '1'
url: http://openaccess.city.ac.uk/1066/
month: '06'
oa: 1
page: 114 - 130
publication: Formal Methods in System Design
publication_status: published
publisher: Springer
publist_id: '1080'
quality_controlled: 0
status: public
title: 'Analog property checkers: a DDR2 case study'
type: journal_article
volume: 36
year: '2010'
...
---
_id: '4380'
abstract:
- lang: eng
text: Cloud computing is an emerging paradigm aimed to offer users pay-per-use computing
resources, while leaving the burden of managing the computing infrastructure to
the cloud provider. We present a new programming and pricing model that gives
the cloud user the flexibility of trading execution speed and price on a per-job
basis. We discuss the scheduling and resource management challenges for the cloud
provider that arise in the implementation of this model. We argue that techniques
from real-time and embedded software can be useful in this context.
author:
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Anmol
full_name: Tomar, Anmol
id: 3D8D36B6-F248-11E8-B48F-1D18A9856A87
last_name: Tomar
- first_name: Vasu
full_name: Singh, Vasu
id: 4DAE2708-F248-11E8-B48F-1D18A9856A87
last_name: Singh
- first_name: Thomas
full_name: Wies, Thomas
id: 447BFB88-F248-11E8-B48F-1D18A9856A87
last_name: Wies
- first_name: Damien
full_name: Zufferey, Damien
id: 4397AC76-F248-11E8-B48F-1D18A9856A87
last_name: Zufferey
orcid: 0000-0002-3197-8736
citation:
ama: 'Henzinger TA, Tomar A, Singh V, Wies T, Zufferey D. A marketplace for cloud
resources. In: ACM; 2010:1-8. doi:10.1145/1879021.1879022'
apa: 'Henzinger, T. A., Tomar, A., Singh, V., Wies, T., & Zufferey, D. (2010).
A marketplace for cloud resources (pp. 1–8). Presented at the EMSOFT: Embedded
Software , Arizona, USA: ACM. https://doi.org/10.1145/1879021.1879022'
chicago: Henzinger, Thomas A, Anmol Tomar, Vasu Singh, Thomas Wies, and Damien Zufferey.
“A Marketplace for Cloud Resources,” 1–8. ACM, 2010. https://doi.org/10.1145/1879021.1879022.
ieee: 'T. A. Henzinger, A. Tomar, V. Singh, T. Wies, and D. Zufferey, “A marketplace
for cloud resources,” presented at the EMSOFT: Embedded Software , Arizona, USA,
2010, pp. 1–8.'
ista: 'Henzinger TA, Tomar A, Singh V, Wies T, Zufferey D. 2010. A marketplace for
cloud resources. EMSOFT: Embedded Software , 1–8.'
mla: Henzinger, Thomas A., et al. A Marketplace for Cloud Resources. ACM,
2010, pp. 1–8, doi:10.1145/1879021.1879022.
short: T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, ACM, 2010,
pp. 1–8.
conference:
end_date: 2010-10-29
location: Arizona, USA
name: 'EMSOFT: Embedded Software '
start_date: 2010-10-24
date_created: 2018-12-11T12:08:33Z
date_published: 2010-10-24T00:00:00Z
date_updated: 2021-01-12T07:56:32Z
day: '24'
ddc:
- '005'
department:
- _id: ToHe
doi: 10.1145/1879021.1879022
file:
- access_level: open_access
checksum: 7680dd24016810710f7c977bc94f85e9
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:09:42Z
date_updated: 2020-07-14T12:46:28Z
file_id: '4767'
file_name: IST-2012-48-v1+1_A_marketplace_for_cloud_resources.pdf
file_size: 222626
relation: main_file
file_date_updated: 2020-07-14T12:46:28Z
has_accepted_license: '1'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Submitted Version
page: 1 - 8
publication_status: published
publisher: ACM
publist_id: '1078'
pubrep_id: '48'
quality_controlled: '1'
scopus_import: 1
status: public
title: A marketplace for cloud resources
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2010'
...
---
_id: '4381'
abstract:
- lang: eng
text: Cloud computing aims to give users virtually unlimited pay-per-use computing
resources without the burden of managing the underlying infrastructure. We claim
that, in order to realize the full potential of cloud computing, the user must
be presented with a pricing model that offers flexibility at the requirements
level, such as a choice between different degrees of execution speed and the cloud
provider must be presented with a programming model that offers flexibility at
the execution level, such as a choice between different scheduling policies. In
such a flexible framework, with each job, the user purchases a virtual computer
with the desired speed and cost characteristics, and the cloud provider can optimize
the utilization of resources across a stream of jobs from different users. We
designed a flexible framework to test our hypothesis, which is called FlexPRICE
(Flexible Provisioning of Resources in a Cloud Environment) and works as follows.
A user presents a job to the cloud. The cloud finds different schedules to execute
the job and presents a set of quotes to the user in terms of price and duration
for the execution. The user then chooses a particular quote and the cloud is obliged
to execute the job according to the chosen quote. FlexPRICE thus hides the complexity
of the actual scheduling decisions from the user, but still provides enough flexibility
to meet the users actual demands. We implemented FlexPRICE in a simulator called
PRICES that allows us to experiment with our framework. We observe that FlexPRICE
provides a wide range of execution options-from fast and expensive to slow and
cheap-- for the whole spectrum of data-intensive and computation-intensive jobs.
We also observe that the set of quotes computed by FlexPRICE do not vary as the
number of simultaneous jobs increases.
article_processing_charge: No
author:
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Anmol
full_name: Tomar, Anmol
id: 3D8D36B6-F248-11E8-B48F-1D18A9856A87
last_name: Tomar
- first_name: Vasu
full_name: Singh, Vasu
id: 4DAE2708-F248-11E8-B48F-1D18A9856A87
last_name: Singh
- first_name: Thomas
full_name: Wies, Thomas
id: 447BFB88-F248-11E8-B48F-1D18A9856A87
last_name: Wies
- first_name: Damien
full_name: Zufferey, Damien
id: 4397AC76-F248-11E8-B48F-1D18A9856A87
last_name: Zufferey
orcid: 0000-0002-3197-8736
citation:
ama: 'Henzinger TA, Tomar A, Singh V, Wies T, Zufferey D. FlexPRICE: Flexible provisioning
of resources in a cloud environment. In: IEEE; 2010:83-90. doi:10.1109/CLOUD.2010.71'
apa: 'Henzinger, T. A., Tomar, A., Singh, V., Wies, T., & Zufferey, D. (2010).
FlexPRICE: Flexible provisioning of resources in a cloud environment (pp. 83–90).
Presented at the CLOUD: Cloud Computing, Miami, USA: IEEE. https://doi.org/10.1109/CLOUD.2010.71'
chicago: 'Henzinger, Thomas A, Anmol Tomar, Vasu Singh, Thomas Wies, and Damien
Zufferey. “FlexPRICE: Flexible Provisioning of Resources in a Cloud Environment,”
83–90. IEEE, 2010. https://doi.org/10.1109/CLOUD.2010.71.'
ieee: 'T. A. Henzinger, A. Tomar, V. Singh, T. Wies, and D. Zufferey, “FlexPRICE:
Flexible provisioning of resources in a cloud environment,” presented at the CLOUD:
Cloud Computing, Miami, USA, 2010, pp. 83–90.'
ista: 'Henzinger TA, Tomar A, Singh V, Wies T, Zufferey D. 2010. FlexPRICE: Flexible
provisioning of resources in a cloud environment. CLOUD: Cloud Computing, 83–90.'
mla: 'Henzinger, Thomas A., et al. FlexPRICE: Flexible Provisioning of Resources
in a Cloud Environment. IEEE, 2010, pp. 83–90, doi:10.1109/CLOUD.2010.71.'
short: T.A. Henzinger, A. Tomar, V. Singh, T. Wies, D. Zufferey, in:, IEEE, 2010,
pp. 83–90.
conference:
end_date: 2010-07-10
location: Miami, USA
name: 'CLOUD: Cloud Computing'
start_date: 2010-07-05
date_created: 2018-12-11T12:08:33Z
date_published: 2010-08-26T00:00:00Z
date_updated: 2021-01-12T07:56:33Z
day: '26'
ddc:
- '004'
department:
- _id: ToHe
doi: 10.1109/CLOUD.2010.71
file:
- access_level: open_access
checksum: 98e534675339a8e2beca08890d048145
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:16:03Z
date_updated: 2020-07-14T12:46:28Z
file_id: '5188'
file_name: IST-2012-47-v1+1_FlexPRICE-_Flexible_provisioning_of_resources_in_a_cloud_environment.pdf
file_size: 467436
relation: main_file
file_date_updated: 2020-07-14T12:46:28Z
has_accepted_license: '1'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Submitted Version
page: 83 - 90
publication_status: published
publisher: IEEE
publist_id: '1077'
pubrep_id: '47'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'FlexPRICE: Flexible provisioning of resources in a cloud environment'
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2010'
...
---
_id: '4382'
abstract:
- lang: eng
text: 'Transactional memory (TM) has shown potential to simplify the task of writing
concurrent programs. Inspired by classical work on databases, formal definitions
of the semantics of TM executions have been proposed. Many of these definitions
assumed that accesses to shared data are solely performed through transactions.
In practice, due to legacy code and concurrency libraries, transactions in a TM
have to share data with non-transactional operations. The semantics of such interaction,
while widely discussed by practitioners, lacks a clear formal specification. Those
interactions can vary, sometimes in subtle ways, between TM implementations and
underlying memory models. We propose a correctness condition for TMs, parametrized
opacity, to formally capture the now folklore notion of strong atomicity by stipulating
the two following intuitive requirements: first, every transaction appears as
if it is executed instantaneously with respect to other transactions and non-transactional
operations, and second, non-transactional operations conform to the given underlying
memory model. We investigate the inherent cost of implementing parametrized opacity.
We first prove that parametrized opacity requires either instrumenting non-transactional
operations (for most memory models) or writing to memory by transactions using
potentially expensive read-modify-write instructions (such as compare-and-swap).
Then, we show that for a class of practical relaxed memory models, parametrized
opacity can indeed be implemented with constant-time instrumentation of non-transactional
writes and no instrumentation of non-transactional reads. We show that, in practice,
parametrizing the notion of correctness allows developing more efficient TM implementations.'
author:
- first_name: Rachid
full_name: Guerraoui, Rachid
last_name: Guerraoui
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Michal
full_name: Kapalka, Michal
last_name: Kapalka
- first_name: Vasu
full_name: Singh, Vasu
id: 4DAE2708-F248-11E8-B48F-1D18A9856A87
last_name: Singh
citation:
ama: 'Guerraoui R, Henzinger TA, Kapalka M, Singh V. Transactions in the jungle.
In: ACM; 2010:263-272. doi:10.1145/1810479.1810529'
apa: 'Guerraoui, R., Henzinger, T. A., Kapalka, M., & Singh, V. (2010). Transactions
in the jungle (pp. 263–272). Presented at the SPAA: ACM Symposium on Parallel
Algorithms and Architectures, Santorini, Greece: ACM. https://doi.org/10.1145/1810479.1810529'
chicago: Guerraoui, Rachid, Thomas A Henzinger, Michal Kapalka, and Vasu Singh.
“Transactions in the Jungle,” 263–72. ACM, 2010. https://doi.org/10.1145/1810479.1810529.
ieee: 'R. Guerraoui, T. A. Henzinger, M. Kapalka, and V. Singh, “Transactions in
the jungle,” presented at the SPAA: ACM Symposium on Parallel Algorithms and Architectures,
Santorini, Greece, 2010, pp. 263–272.'
ista: 'Guerraoui R, Henzinger TA, Kapalka M, Singh V. 2010. Transactions in the
jungle. SPAA: ACM Symposium on Parallel Algorithms and Architectures, 263–272.'
mla: Guerraoui, Rachid, et al. Transactions in the Jungle. ACM, 2010, pp.
263–72, doi:10.1145/1810479.1810529.
short: R. Guerraoui, T.A. Henzinger, M. Kapalka, V. Singh, in:, ACM, 2010, pp. 263–272.
conference:
end_date: 2010-06-15
location: Santorini, Greece
name: 'SPAA: ACM Symposium on Parallel Algorithms and Architectures'
start_date: 2010-06-13
date_created: 2018-12-11T12:08:34Z
date_published: 2010-06-13T00:00:00Z
date_updated: 2021-01-12T07:56:33Z
day: '13'
ddc:
- '005'
department:
- _id: ToHe
doi: 10.1145/1810479.1810529
file:
- access_level: open_access
checksum: f2ad6c00a6304da34bf21bcdcfd36c4b
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:14:28Z
date_updated: 2020-07-14T12:46:28Z
file_id: '5080'
file_name: IST-2012-46-v1+1_Transactions_in_the_jungle.pdf
file_size: 246409
relation: main_file
file_date_updated: 2020-07-14T12:46:28Z
has_accepted_license: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Submitted Version
page: 263 - 272
publication_status: published
publisher: ACM
publist_id: '1076'
pubrep_id: '46'
quality_controlled: '1'
status: public
title: Transactions in the jungle
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
year: '2010'
...
---
_id: '4388'
abstract:
- lang: eng
text: GIST is a tool that (a) solves the qualitative analysis problem of turn-based
probabilistic games with ω-regular objectives; and (b) synthesizes reasonable
environment assumptions for synthesis of unrealizable specifications. Our tool
provides the first and efficient implementations of several reduction-based techniques
to solve turn-based probabilistic games, and uses the analysis of turn-based probabilistic
games for synthesizing environment assumptions for unrealizable specifications.
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Barbara
full_name: Jobstmann, Barbara
last_name: Jobstmann
- first_name: Arjun
full_name: Radhakrishna, Arjun
id: 3B51CAC4-F248-11E8-B48F-1D18A9856A87
last_name: Radhakrishna
citation:
ama: 'Chatterjee K, Henzinger TA, Jobstmann B, Radhakrishna A. GIST: A solver for
probabilistic games. In: Vol 6174. Springer; 2010:665-669. doi:10.1007/978-3-642-14295-6_57'
apa: 'Chatterjee, K., Henzinger, T. A., Jobstmann, B., & Radhakrishna, A. (2010).
GIST: A solver for probabilistic games (Vol. 6174, pp. 665–669). Presented at
the CAV: Computer Aided Verification, Edinburgh, UK: Springer. https://doi.org/10.1007/978-3-642-14295-6_57'
chicago: 'Chatterjee, Krishnendu, Thomas A Henzinger, Barbara Jobstmann, and Arjun
Radhakrishna. “GIST: A Solver for Probabilistic Games,” 6174:665–69. Springer,
2010. https://doi.org/10.1007/978-3-642-14295-6_57.'
ieee: 'K. Chatterjee, T. A. Henzinger, B. Jobstmann, and A. Radhakrishna, “GIST:
A solver for probabilistic games,” presented at the CAV: Computer Aided Verification,
Edinburgh, UK, 2010, vol. 6174, pp. 665–669.'
ista: 'Chatterjee K, Henzinger TA, Jobstmann B, Radhakrishna A. 2010. GIST: A solver
for probabilistic games. CAV: Computer Aided Verification, LNCS, vol. 6174, 665–669.'
mla: 'Chatterjee, Krishnendu, et al. GIST: A Solver for Probabilistic Games.
Vol. 6174, Springer, 2010, pp. 665–69, doi:10.1007/978-3-642-14295-6_57.'
short: K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, in:, Springer,
2010, pp. 665–669.
conference:
end_date: 2010-07-17
location: Edinburgh, UK
name: 'CAV: Computer Aided Verification'
start_date: 2010-07-15
date_created: 2018-12-11T12:08:36Z
date_published: 2010-07-01T00:00:00Z
date_updated: 2023-02-23T12:24:17Z
day: '01'
ddc:
- '004'
department:
- _id: KrCh
- _id: ToHe
doi: 10.1007/978-3-642-14295-6_57
ec_funded: 1
external_id:
arxiv:
- '1004.2367'
file:
- access_level: open_access
checksum: 0b2ef8c4037ffccc6902d93081af24f7
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:16:33Z
date_updated: 2020-07-14T12:46:28Z
file_id: '5221'
file_name: IST-2012-43-v1+1_GIST-_A_solver_for_probabilistic_games.pdf
file_size: 293605
relation: main_file
file_date_updated: 2020-07-14T12:46:28Z
has_accepted_license: '1'
intvolume: ' 6174'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
page: 665 - 669
project:
- _id: 25EFB36C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '215543'
name: COMponent-Based Embedded Systems design Techniques
- _id: 25F1337C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '214373'
name: Design for Embedded Systems
publication_status: published
publisher: Springer
publist_id: '1068'
pubrep_id: '43'
quality_controlled: '1'
related_material:
record:
- id: '5393'
relation: earlier_version
status: public
scopus_import: 1
status: public
title: 'GIST: A solver for probabilistic games'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6174
year: '2010'
...
---
_id: '4389'
abstract:
- lang: eng
text: 'Digital components play a central role in the design of complex embedded
systems. These components are interconnected with other, possibly analog, devices
and the physical environment. This environment cannot be entirely captured and
can provide inaccurate input data to the component. It is thus important for digital
components to have a robust behavior, i.e. the presence of a small change in the
input sequences should not result in a drastic change in the output sequences.
In this paper, we study a notion of robustness for sequential circuits. However,
since sequential circuits may have parts that are naturally discontinuous (e.g.,
digital controllers with switching behavior), we need a flexible framework that
accommodates this fact and leaves discontinuous parts of the circuit out from
the robustness analysis. As a consequence, we consider sequential circuits that
have their input variables partitioned into two disjoint sets: control and disturbance
variables. Our contributions are (1) a definition of robustness for sequential
circuits as a form of continuity with respect to disturbance variables, (2) the
characterization of the exact class of sequential circuits that are robust according
to our definition, (3) an algorithm to decide whether a sequential circuit is
robust or not.'
author:
- first_name: Laurent
full_name: Doyen, Laurent
last_name: Doyen
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Axel
full_name: Legay, Axel
last_name: Legay
- first_name: Dejan
full_name: Nickovic, Dejan
id: 41BCEE5C-F248-11E8-B48F-1D18A9856A87
last_name: Nickovic
citation:
ama: 'Doyen L, Henzinger TA, Legay A, Nickovic D. Robustness of sequential circuits.
In: IEEE; 2010:77-84. doi:10.1109/ACSD.2010.26'
apa: 'Doyen, L., Henzinger, T. A., Legay, A., & Nickovic, D. (2010). Robustness
of sequential circuits (pp. 77–84). Presented at the ACSD: Application of Concurrency
to System Design, IEEE. https://doi.org/10.1109/ACSD.2010.26'
chicago: Doyen, Laurent, Thomas A Henzinger, Axel Legay, and Dejan Nickovic. “Robustness
of Sequential Circuits,” 77–84. IEEE, 2010. https://doi.org/10.1109/ACSD.2010.26.
ieee: 'L. Doyen, T. A. Henzinger, A. Legay, and D. Nickovic, “Robustness of sequential
circuits,” presented at the ACSD: Application of Concurrency to System Design,
2010, pp. 77–84.'
ista: 'Doyen L, Henzinger TA, Legay A, Nickovic D. 2010. Robustness of sequential
circuits. ACSD: Application of Concurrency to System Design, 77–84.'
mla: Doyen, Laurent, et al. Robustness of Sequential Circuits. IEEE, 2010,
pp. 77–84, doi:10.1109/ACSD.2010.26.
short: L. Doyen, T.A. Henzinger, A. Legay, D. Nickovic, in:, IEEE, 2010, pp. 77–84.
conference:
name: 'ACSD: Application of Concurrency to System Design'
date_created: 2018-12-11T12:08:36Z
date_published: 2010-08-23T00:00:00Z
date_updated: 2021-01-12T07:56:36Z
day: '23'
ddc:
- '004'
department:
- _id: ToHe
doi: 10.1109/ACSD.2010.26
file:
- access_level: open_access
checksum: 42b2952bfc6b6974617bd554842b904a
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:09:10Z
date_updated: 2020-07-14T12:46:28Z
file_id: '4733'
file_name: IST-2012-44-v1+1_Robustness_of_sequential_circuits.pdf
file_size: 159920
relation: main_file
file_date_updated: 2020-07-14T12:46:28Z
has_accepted_license: '1'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Submitted Version
page: 77 - 84
publication_status: published
publisher: IEEE
publist_id: '1069'
pubrep_id: '44'
quality_controlled: '1'
scopus_import: 1
status: public
title: Robustness of sequential circuits
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
year: '2010'
...
---
_id: '4390'
abstract:
- lang: eng
text: Concurrent data structures with fine-grained synchronization are notoriously
difficult to implement correctly. The difficulty of reasoning about these implementations
does not stem from the number of variables or the program size, but rather from
the large number of possible interleavings. These implementations are therefore
prime candidates for model checking. We introduce an algorithm for verifying linearizability
of singly-linked heap-based concurrent data structures. We consider a model consisting
of an unbounded heap where each vertex stores an element from an unbounded data
domain, with a restricted set of operations for testing and updating pointers
and data elements. Our main result is that linearizability is decidable for programs
that invoke a fixed number of methods, possibly in parallel. This decidable fragment
covers many of the common implementation techniques — fine-grained locking, lazy
synchronization, and lock-free synchronization. We also show how the technique
can be used to verify optimistic implementations with the help of programmer annotations.
We developed a verification tool CoLT and evaluated it on a representative sample
of Java implementations of the concurrent set data structure. The tool verified
linearizability of a number of implementations, found a known error in a lock-free
implementation and proved that the corrected version is linearizable.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Pavol
full_name: Cerny, Pavol
id: 4DCBEFFE-F248-11E8-B48F-1D18A9856A87
last_name: Cerny
- first_name: Arjun
full_name: Radhakrishna, Arjun
id: 3B51CAC4-F248-11E8-B48F-1D18A9856A87
last_name: Radhakrishna
- first_name: Damien
full_name: Zufferey, Damien
id: 4397AC76-F248-11E8-B48F-1D18A9856A87
last_name: Zufferey
orcid: 0000-0002-3197-8736
- first_name: Swarat
full_name: Chaudhuri, Swarat
last_name: Chaudhuri
- first_name: Rajeev
full_name: Alur, Rajeev
last_name: Alur
citation:
ama: 'Cerny P, Radhakrishna A, Zufferey D, Chaudhuri S, Alur R. Model checking of
linearizability of concurrent list implementations. In: Vol 6174. Springer; 2010:465-479.
doi:10.1007/978-3-642-14295-6_41'
apa: 'Cerny, P., Radhakrishna, A., Zufferey, D., Chaudhuri, S., & Alur, R. (2010).
Model checking of linearizability of concurrent list implementations (Vol. 6174,
pp. 465–479). Presented at the CAV: Computer Aided Verification, Edinburgh, UK:
Springer. https://doi.org/10.1007/978-3-642-14295-6_41'
chicago: Cerny, Pavol, Arjun Radhakrishna, Damien Zufferey, Swarat Chaudhuri, and
Rajeev Alur. “Model Checking of Linearizability of Concurrent List Implementations,”
6174:465–79. Springer, 2010. https://doi.org/10.1007/978-3-642-14295-6_41.
ieee: 'P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, and R. Alur, “Model
checking of linearizability of concurrent list implementations,” presented at
the CAV: Computer Aided Verification, Edinburgh, UK, 2010, vol. 6174, pp. 465–479.'
ista: 'Cerny P, Radhakrishna A, Zufferey D, Chaudhuri S, Alur R. 2010. Model checking
of linearizability of concurrent list implementations. CAV: Computer Aided Verification,
LNCS, vol. 6174, 465–479.'
mla: Cerny, Pavol, et al. Model Checking of Linearizability of Concurrent List
Implementations. Vol. 6174, Springer, 2010, pp. 465–79, doi:10.1007/978-3-642-14295-6_41.
short: P. Cerny, A. Radhakrishna, D. Zufferey, S. Chaudhuri, R. Alur, in:, Springer,
2010, pp. 465–479.
conference:
end_date: 2010-07-17
location: Edinburgh, UK
name: 'CAV: Computer Aided Verification'
start_date: 2010-07-15
date_created: 2018-12-11T12:08:36Z
date_published: 2010-07-01T00:00:00Z
date_updated: 2023-02-23T12:24:12Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-642-14295-6_41
file:
- access_level: open_access
checksum: 2eb211ce40b3c4988bce3a3592980704
content_type: application/pdf
creator: dernst
date_created: 2020-05-19T16:31:56Z
date_updated: 2020-07-14T12:46:28Z
file_id: '7873'
file_name: 2010_CAV_Cerny.pdf
file_size: 3633276
relation: main_file
file_date_updated: 2020-07-14T12:46:28Z
has_accepted_license: '1'
intvolume: ' 6174'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
page: 465 - 479
publication_status: published
publisher: Springer
publist_id: '1066'
pubrep_id: '27'
quality_controlled: '1'
related_material:
record:
- id: '5391'
relation: earlier_version
status: public
status: public
title: Model checking of linearizability of concurrent list implementations
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6174
year: '2010'
...
---
_id: '4393'
abstract:
- lang: eng
text: Boolean notions of correctness are formalized by preorders on systems. Quantitative
measures of correctness can be formalized by real-valued distance functions between
systems, where the distance between implementation and specification provides
a measure of “fit” or “desirability.” We extend the simulation preorder to the
quantitative setting, by making each player of a simulation game pay a certain
price for her choices. We use the resulting games with quantitative objectives
to define three different simulation distances. The correctness distance measures
how much the specification must be changed in order to be satisfied by the implementation.
The coverage distance measures how much the implementation restricts the degrees
of freedom offered by the specification. The robustness distance measures how
much a system can deviate from the implementation description without violating
the specification. We consider these distances for safety as well as liveness
specifications. The distances can be computed in polynomial time for safety specifications,
and for liveness specifications given by weak fairness constraints. We show that
the distance functions satisfy the triangle inequality, that the distance between
two systems does not increase under parallel composition with a third system,
and that the distance between two systems can be bounded from above and below
by distances between abstractions of the two systems. These properties suggest
that our simulation distances provide an appropriate basis for a quantitative
theory of discrete systems. We also demonstrate how the robustness distance can
be used to measure how many transmission errors are tolerated by error correcting
codes.
acknowledgement: This work was partially supported by the European Union project COMBEST
and the European Network of Excellence ArtistDesign.
alternative_title:
- LNCS
author:
- first_name: Pavol
full_name: Cerny, Pavol
id: 4DCBEFFE-F248-11E8-B48F-1D18A9856A87
last_name: Cerny
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Arjun
full_name: Radhakrishna, Arjun
id: 3B51CAC4-F248-11E8-B48F-1D18A9856A87
last_name: Radhakrishna
citation:
ama: 'Cerny P, Henzinger TA, Radhakrishna A. Simulation distances. In: Vol 6269.
Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2010:235-268. doi:10.1007/978-3-642-15375-4_18'
apa: 'Cerny, P., Henzinger, T. A., & Radhakrishna, A. (2010). Simulation distances
(Vol. 6269, pp. 235–268). Presented at the CONCUR: Concurrency Theory, Paris,
France: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.1007/978-3-642-15375-4_18'
chicago: Cerny, Pavol, Thomas A Henzinger, and Arjun Radhakrishna. “Simulation Distances,”
6269:235–68. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010. https://doi.org/10.1007/978-3-642-15375-4_18.
ieee: 'P. Cerny, T. A. Henzinger, and A. Radhakrishna, “Simulation distances,” presented
at the CONCUR: Concurrency Theory, Paris, France, 2010, vol. 6269, pp. 235–268.'
ista: 'Cerny P, Henzinger TA, Radhakrishna A. 2010. Simulation distances. CONCUR:
Concurrency Theory, LNCS, vol. 6269, 235–268.'
mla: Cerny, Pavol, et al. Simulation Distances. Vol. 6269, Schloss Dagstuhl
- Leibniz-Zentrum für Informatik, 2010, pp. 235–68, doi:10.1007/978-3-642-15375-4_18.
short: P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2010, pp. 235–268.
conference:
end_date: 2010-09-03
location: Paris, France
name: 'CONCUR: Concurrency Theory'
start_date: 2010-08-31
date_created: 2018-12-11T12:08:37Z
date_published: 2010-11-01T00:00:00Z
date_updated: 2023-02-23T12:24:04Z
day: '01'
ddc:
- '005'
department:
- _id: ToHe
doi: 10.1007/978-3-642-15375-4_18
ec_funded: 1
file:
- access_level: open_access
checksum: ea567903676ba8afe0507ee11313dce5
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:15:12Z
date_updated: 2020-07-14T12:46:28Z
file_id: '5130'
file_name: IST-2012-42-v1+1_Simulation_distances.pdf
file_size: 198913
relation: main_file
file_date_updated: 2020-07-14T12:46:28Z
has_accepted_license: '1'
intvolume: ' 6269'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Submitted Version
page: 235 - 268
project:
- _id: 25EFB36C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '215543'
name: COMponent-Based Embedded Systems design Techniques
- _id: 25F1337C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '214373'
name: Design for Embedded Systems
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '1065'
pubrep_id: '42'
quality_controlled: '1'
related_material:
record:
- id: '3249'
relation: later_version
status: public
- id: '5389'
relation: earlier_version
status: public
scopus_import: 1
status: public
title: Simulation distances
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 6269
year: '2010'
...
---
_id: '4396'
abstract:
- lang: eng
text: 'Shape analysis is a promising technique to prove program properties about
recursive data structures. The challenge is to automatically determine the data-structure
type, and to supply the shape analysis with the necessary information about the
data structure. We present a stepwise approach to the selection of instrumentation
predicates for a TVLA-based shape analysis, which takes us a step closer towards
the fully automatic verification of data structures. The approach uses two techniques
to guide the refinement of shape abstractions: (1) during program exploration,
an explicit heap analysis collects sample instances of the heap structures, which
are used to identify the data structures that are manipulated by the program;
and (2) during abstraction refinement along an infeasible error path, we consider
different possible heap abstractions and choose the coarsest one that eliminates
the infeasible path. We have implemented this combined approach for automatic
shape refinement as an extension of the software model checker BLAST. Example
programs from a data-structure library that manipulate doubly-linked lists and
trees were successfully verified by our tool.'
alternative_title:
- LNCS
author:
- first_name: Dirk
full_name: Beyer, Dirk
last_name: Beyer
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Grégory
full_name: Théoduloz, Grégory
last_name: Théoduloz
- first_name: Damien
full_name: Zufferey, Damien
id: 4397AC76-F248-11E8-B48F-1D18A9856A87
last_name: Zufferey
orcid: 0000-0002-3197-8736
citation:
ama: 'Beyer D, Henzinger TA, Théoduloz G, Zufferey D. Shape refinement through explicit
heap analysis. In: Rosenblum D, Taenzer G, eds. Vol 6013. Springer; 2010:263-277.
doi:10.1007/978-3-642-12029-9_19'
apa: 'Beyer, D., Henzinger, T. A., Théoduloz, G., & Zufferey, D. (2010). Shape
refinement through explicit heap analysis. In D. Rosenblum & G. Taenzer (Eds.)
(Vol. 6013, pp. 263–277). Presented at the FASE: Fundamental Approaches To Software
Engineering, Paphos, Cyprus: Springer. https://doi.org/10.1007/978-3-642-12029-9_19'
chicago: Beyer, Dirk, Thomas A Henzinger, Grégory Théoduloz, and Damien Zufferey.
“Shape Refinement through Explicit Heap Analysis.” edited by David Rosenblum and
Gabriele Taenzer, 6013:263–77. Springer, 2010. https://doi.org/10.1007/978-3-642-12029-9_19.
ieee: 'D. Beyer, T. A. Henzinger, G. Théoduloz, and D. Zufferey, “Shape refinement
through explicit heap analysis,” presented at the FASE: Fundamental Approaches
To Software Engineering, Paphos, Cyprus, 2010, vol. 6013, pp. 263–277.'
ista: 'Beyer D, Henzinger TA, Théoduloz G, Zufferey D. 2010. Shape refinement through
explicit heap analysis. FASE: Fundamental Approaches To Software Engineering,
LNCS, vol. 6013, 263–277.'
mla: Beyer, Dirk, et al. Shape Refinement through Explicit Heap Analysis.
Edited by David Rosenblum and Gabriele Taenzer, vol. 6013, Springer, 2010, pp.
263–77, doi:10.1007/978-3-642-12029-9_19.
short: D. Beyer, T.A. Henzinger, G. Théoduloz, D. Zufferey, in:, D. Rosenblum, G.
Taenzer (Eds.), Springer, 2010, pp. 263–277.
conference:
end_date: 2010-03-28
location: Paphos, Cyprus
name: 'FASE: Fundamental Approaches To Software Engineering'
start_date: 2010-03-20
date_created: 2018-12-11T12:08:38Z
date_published: 2010-04-21T00:00:00Z
date_updated: 2021-01-12T07:56:40Z
day: '21'
ddc:
- '004'
department:
- _id: ToHe
doi: 10.1007/978-3-642-12029-9_19
editor:
- first_name: David
full_name: Rosenblum, David
last_name: Rosenblum
- first_name: Gabriele
full_name: Taenzer, Gabriele
last_name: Taenzer
file:
- access_level: open_access
checksum: 7d26e59a9681487d7283eba337292b2c
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:18:13Z
date_updated: 2020-07-14T12:46:29Z
file_id: '5332'
file_name: IST-2012-41-v1+1_Shape_refinement_through_explicit_heap_analysis.pdf
file_size: 312147
relation: main_file
file_date_updated: 2020-07-14T12:46:29Z
has_accepted_license: '1'
intvolume: ' 6013'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Submitted Version
page: 263 - 277
project:
- _id: 2587B514-B435-11E9-9278-68D0E5697425
name: Microsoft Research Faculty Fellowship
publication_status: published
publisher: Springer
publist_id: '1061'
pubrep_id: '41'
quality_controlled: '1'
scopus_import: 1
status: public
title: Shape refinement through explicit heap analysis
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 6013
year: '2010'
...
---
_id: '2499'
abstract:
- lang: eng
text: G protein-coupled receptors (GPCRs) have critical functions in intercellular
communication. Although a wide range of different receptors have been identified
in the same cells, the mechanism by which signals are integrated remains elusive.
The ability of GPCRs to form dimers or larger hetero-oligomers is thought to generate
such signal integration. We examined the molecular mechanisms responsible for
the GABAB receptor-mediated potentiation of the mGlu receptor signalling reported
in Purkinje neurons. We showed that this effect does not require a physical interaction
between both receptors. Instead, it is the result of a more general mechanism
in which the βγ subunits produced by the Gi-coupled GABAB receptor enhance the
mGlu-mediated Gq response. Most importantly, this mechanism could be generally
applied to other pairs of Gi- and Gq-coupled receptors and the signal integration
varied depending on the time delay between activation of each receptor. Such a
mechanism helps explain specific properties of cells expressing two different
Gi- and Gq-coupled receptors activated by a single transmitter, or properties
of GPCRs naturally coupled to both types of the G protein.
author:
- first_name: Marie
full_name: Rives, Marie L
last_name: Rives
- first_name: Claire
full_name: Vol, Claire
last_name: Vol
- first_name: Yugo
full_name: Fukazawa, Yugo
last_name: Fukazawa
- first_name: Norbert
full_name: Tinel, Norbert
last_name: Tinel
- first_name: Eric
full_name: Trinquet, Eric
last_name: Trinquet
- first_name: Mohammed
full_name: Ayoub, Mohammed A
last_name: Ayoub
- first_name: Ryuichi
full_name: Ryuichi Shigemoto
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Jean
full_name: Pin, Jean-Philippe
last_name: Pin
- first_name: Laurent
full_name: Prezèau, Laurent
last_name: Prezèau
citation:
ama: Rives M, Vol C, Fukazawa Y, et al. Crosstalk between GABAB and mGlu1a receptors
reveals new insight into GPCR signal integration. EMBO Journal. 2009;28(15):2195-2208.
doi:10.1038/emboj.2009.177
apa: Rives, M., Vol, C., Fukazawa, Y., Tinel, N., Trinquet, E., Ayoub, M., … Prezèau,
L. (2009). Crosstalk between GABAB and mGlu1a receptors reveals new insight into
GPCR signal integration. EMBO Journal. Wiley-Blackwell. https://doi.org/10.1038/emboj.2009.177
chicago: Rives, Marie, Claire Vol, Yugo Fukazawa, Norbert Tinel, Eric Trinquet,
Mohammed Ayoub, Ryuichi Shigemoto, Jean Pin, and Laurent Prezèau. “Crosstalk between
GABAB and MGlu1a Receptors Reveals New Insight into GPCR Signal Integration.”
EMBO Journal. Wiley-Blackwell, 2009. https://doi.org/10.1038/emboj.2009.177.
ieee: M. Rives et al., “Crosstalk between GABAB and mGlu1a receptors reveals
new insight into GPCR signal integration,” EMBO Journal, vol. 28, no. 15.
Wiley-Blackwell, pp. 2195–2208, 2009.
ista: Rives M, Vol C, Fukazawa Y, Tinel N, Trinquet E, Ayoub M, Shigemoto R, Pin
J, Prezèau L. 2009. Crosstalk between GABAB and mGlu1a receptors reveals new insight
into GPCR signal integration. EMBO Journal. 28(15), 2195–2208.
mla: Rives, Marie, et al. “Crosstalk between GABAB and MGlu1a Receptors Reveals
New Insight into GPCR Signal Integration.” EMBO Journal, vol. 28, no. 15,
Wiley-Blackwell, 2009, pp. 2195–208, doi:10.1038/emboj.2009.177.
short: M. Rives, C. Vol, Y. Fukazawa, N. Tinel, E. Trinquet, M. Ayoub, R. Shigemoto,
J. Pin, L. Prezèau, EMBO Journal 28 (2009) 2195–2208.
date_created: 2018-12-11T11:58:01Z
date_published: 2009-08-15T00:00:00Z
date_updated: 2021-01-12T06:57:51Z
day: '15'
doi: 10.1038/emboj.2009.177
extern: 1
intvolume: ' 28'
issue: '15'
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2726695/
month: '08'
oa: 1
page: 2195 - 2208
publication: EMBO Journal
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4402'
quality_controlled: 0
status: public
title: Crosstalk between GABAB and mGlu1a receptors reveals new insight into GPCR
signal integration
type: journal_article
volume: 28
year: '2009'
...
---
_id: '3051'
article_type: original
author:
- first_name: Dolf
full_name: Weijers, Dolf
last_name: Weijers
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: 'Weijers D, Friml J. SnapShot: Auxin signaling and transport. Cell.
2009;136(6):1172-1172. doi:10.1016/j.cell.2009.03.009'
apa: 'Weijers, D., & Friml, J. (2009). SnapShot: Auxin signaling and transport.
Cell. Cell Press. https://doi.org/10.1016/j.cell.2009.03.009'
chicago: 'Weijers, Dolf, and Jiří Friml. “SnapShot: Auxin Signaling and Transport.”
Cell. Cell Press, 2009. https://doi.org/10.1016/j.cell.2009.03.009.'
ieee: 'D. Weijers and J. Friml, “SnapShot: Auxin signaling and transport,” Cell,
vol. 136, no. 6. Cell Press, pp. 1172–1172, 2009.'
ista: 'Weijers D, Friml J. 2009. SnapShot: Auxin signaling and transport. Cell.
136(6), 1172–1172.'
mla: 'Weijers, Dolf, and Jiří Friml. “SnapShot: Auxin Signaling and Transport.”
Cell, vol. 136, no. 6, Cell Press, 2009, pp. 1172–1172, doi:10.1016/j.cell.2009.03.009.'
short: D. Weijers, J. Friml, Cell 136 (2009) 1172–1172.
date_created: 2018-12-11T12:01:05Z
date_published: 2009-03-20T00:00:00Z
date_updated: 2021-01-12T07:40:42Z
day: '20'
doi: 10.1016/j.cell.2009.03.009
extern: '1'
external_id:
pmid:
- ' 19303857'
intvolume: ' 136'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pubmed/19303857
month: '03'
oa: 1
oa_version: Published Version
page: 1172 - 1172
pmid: 1
publication: Cell
publication_status: published
publisher: Cell Press
publist_id: '3650'
quality_controlled: '1'
status: public
title: 'SnapShot: Auxin signaling and transport'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 136
year: '2009'
...
---
_id: '3052'
abstract:
- lang: eng
text: The dynamic, differential distribution of the hormone auxin within plant tissues
controls an impressive variety of developmental processes, which tailor plant
growth and morphology to environmental conditions. Various environmental and endogenous
signals can be integrated into changes in auxin distribution through their effects
on local auxin biosynthesis and intercellular auxin transport. Individual cells
interpret auxin largely by a nuclear signaling pathway that involves the F box
protein TIR1 acting as an auxin receptor. Auxin-dependent TIR1 activity leads
to ubiquitination-based degradation of transcriptional repressors and complex
transcriptional reprogramming. Thus, auxin appears to be a versatile trigger of
preprogrammed developmental changes in plant cells.
author:
- first_name: Steffen
full_name: Vanneste, Steffen
last_name: Vanneste
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: 'Vanneste S, Friml J. Auxin: A trigger for change in plant development. Cell.
2009;136(6):1005-1016. doi:10.1016/j.cell.2009.03.001'
apa: 'Vanneste, S., & Friml, J. (2009). Auxin: A trigger for change in plant
development. Cell. Cell Press. https://doi.org/10.1016/j.cell.2009.03.001'
chicago: 'Vanneste, Steffen, and Jiří Friml. “Auxin: A Trigger for Change in Plant
Development.” Cell. Cell Press, 2009. https://doi.org/10.1016/j.cell.2009.03.001.'
ieee: 'S. Vanneste and J. Friml, “Auxin: A trigger for change in plant development,”
Cell, vol. 136, no. 6. Cell Press, pp. 1005–1016, 2009.'
ista: 'Vanneste S, Friml J. 2009. Auxin: A trigger for change in plant development.
Cell. 136(6), 1005–1016.'
mla: 'Vanneste, Steffen, and Jiří Friml. “Auxin: A Trigger for Change in Plant Development.”
Cell, vol. 136, no. 6, Cell Press, 2009, pp. 1005–16, doi:10.1016/j.cell.2009.03.001.'
short: S. Vanneste, J. Friml, Cell 136 (2009) 1005–1016.
date_created: 2018-12-11T12:01:05Z
date_published: 2009-03-20T00:00:00Z
date_updated: 2021-01-12T07:40:43Z
day: '20'
doi: 10.1016/j.cell.2009.03.001
extern: '1'
external_id:
pmid:
- ' 19303845'
intvolume: ' 136'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pubmed/19303845
month: '03'
oa: 1
oa_version: Published Version
page: 1005 - 1016
pmid: 1
publication: Cell
publication_status: published
publisher: Cell Press
publist_id: '3651'
quality_controlled: '1'
status: public
title: 'Auxin: A trigger for change in plant development'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 136
year: '2009'
...
---
_id: '3057'
abstract:
- lang: eng
text: The differential distribution of the plant signaling molecule auxin is required
for many aspects of plant development. Local auxin maxima and gradients arise
as a result of local auxin metabolism and, predominantly, from directional cell-to-cell
transport. In this primer, we discuss how the coordinated activity of several
auxin influx and efflux systems, which transport auxin across the plasma membrane,
mediates directional auxin flow. This activity crucially contributes to the correct
setting of developmental cues in embryogenesis, organogenesis, vascular tissue
formation and directional growth in response to environmental stimuli.
author:
- first_name: Jan
full_name: Petrášek, Jan
last_name: Petrášek
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Petrášek J, Friml J. Auxin transport routes in plant development. Development.
2009;136(16):2675-2688. doi:10.1242/dev.030353
apa: Petrášek, J., & Friml, J. (2009). Auxin transport routes in plant development.
Development. Company of Biologists. https://doi.org/10.1242/dev.030353
chicago: Petrášek, Jan, and Jiří Friml. “Auxin Transport Routes in Plant Development.”
Development. Company of Biologists, 2009. https://doi.org/10.1242/dev.030353.
ieee: J. Petrášek and J. Friml, “Auxin transport routes in plant development,” Development,
vol. 136, no. 16. Company of Biologists, pp. 2675–2688, 2009.
ista: Petrášek J, Friml J. 2009. Auxin transport routes in plant development. Development.
136(16), 2675–2688.
mla: Petrášek, Jan, and Jiří Friml. “Auxin Transport Routes in Plant Development.”
Development, vol. 136, no. 16, Company of Biologists, 2009, pp. 2675–88,
doi:10.1242/dev.030353.
short: J. Petrášek, J. Friml, Development 136 (2009) 2675–2688.
date_created: 2018-12-11T12:01:07Z
date_published: 2009-08-15T00:00:00Z
date_updated: 2021-01-12T07:40:45Z
day: '15'
doi: 10.1242/dev.030353
extern: '1'
external_id:
pmid:
- ' 19633168'
intvolume: ' 136'
issue: '16'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pubmed/19633168
month: '08'
oa: 1
oa_version: Published Version
page: 2675 - 2688
pmid: 1
publication: Development
publication_status: published
publisher: Company of Biologists
publist_id: '3644'
quality_controlled: '1'
status: public
title: Auxin transport routes in plant development
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 136
year: '2009'
...
---
_id: '3061'
abstract:
- lang: eng
text: The PIN-FORMED (PIN) proteins are secondary transporters acting in the efflux
of the plant signal molecule auxin from cells. They are asymmetrically localized
within cells and their polarity determines the directionality of intercellular
auxin flow. PIN genes are found exclusively in the genomes of multicellular plants
and play an important role in regulating asymmetric auxin distribution in multiple
developmental processes, including embryogenesis, organogenesis, tissue differentiation
and tropic responses. All PIN proteins have a similar structure with amino- and
carboxy-terminal hydrophobic, membrane-spanning domains separated by a central
hydrophilic domain. The structure of the hydrophobic domains is well conserved.
The hydrophilic domain is more divergent and it determines eight groups within
the protein family. The activity of PIN proteins is regulated at multiple levels,
including transcription, protein stability, subcellular localization and transport
activity. Different endogenous and environmental signals can modulate PIN activity
and thus modulate auxin-distribution-dependent development. A large group of PIN
proteins, including the most ancient members known from mosses, localize to the
endoplasmic reticulum and they regulate the subcellular compartmentalization of
auxin and thus auxin metabolism. Further work is needed to establish the physiological
importance of this unexpected mode of auxin homeostasis regulation. Furthermore,
the evolution of PIN-based transport, PIN protein structure and more detailed
biochemical characterization of the transport function are important topics for
further studies.
author:
- first_name: Pavel
full_name: Křeček, Pavel
last_name: Křeček
- first_name: Petr
full_name: Skůpa, Petr
last_name: Skůpa
- first_name: Jiří
full_name: Libus, Jiří
last_name: Libus
- first_name: Satoshi
full_name: Naramoto, Satoshi
last_name: Naramoto
- first_name: Ricardo
full_name: Tejos, Ricardo
last_name: Tejos
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Eva
full_name: Zažímalová, Eva
last_name: Zažímalová
citation:
ama: Křeček P, Skůpa P, Libus J, et al. The PIN-FORMED (PIN) protein family of auxin
transporters. Genome Biology. 2009;10(12). doi:10.1186/gb-2009-10-12-249
apa: Křeček, P., Skůpa, P., Libus, J., Naramoto, S., Tejos, R., Friml, J., &
Zažímalová, E. (2009). The PIN-FORMED (PIN) protein family of auxin transporters.
Genome Biology. BioMed Central. https://doi.org/10.1186/gb-2009-10-12-249
chicago: Křeček, Pavel, Petr Skůpa, Jiří Libus, Satoshi Naramoto, Ricardo Tejos,
Jiří Friml, and Eva Zažímalová. “The PIN-FORMED (PIN) Protein Family of Auxin
Transporters.” Genome Biology. BioMed Central, 2009. https://doi.org/10.1186/gb-2009-10-12-249.
ieee: P. Křeček et al., “The PIN-FORMED (PIN) protein family of auxin transporters,”
Genome Biology, vol. 10, no. 12. BioMed Central, 2009.
ista: Křeček P, Skůpa P, Libus J, Naramoto S, Tejos R, Friml J, Zažímalová E. 2009.
The PIN-FORMED (PIN) protein family of auxin transporters. Genome Biology. 10(12).
mla: Křeček, Pavel, et al. “The PIN-FORMED (PIN) Protein Family of Auxin Transporters.”
Genome Biology, vol. 10, no. 12, BioMed Central, 2009, doi:10.1186/gb-2009-10-12-249.
short: P. Křeček, P. Skůpa, J. Libus, S. Naramoto, R. Tejos, J. Friml, E. Zažímalová,
Genome Biology 10 (2009).
date_created: 2018-12-11T12:01:08Z
date_published: 2009-12-29T00:00:00Z
date_updated: 2021-01-12T07:40:46Z
day: '29'
doi: 10.1186/gb-2009-10-12-249
extern: '1'
external_id:
pmid:
- '20053306'
intvolume: ' 10'
issue: '12'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2812941/
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
publication: Genome Biology
publication_status: published
publisher: BioMed Central
publist_id: '3640'
quality_controlled: '1'
status: public
title: The PIN-FORMED (PIN) protein family of auxin transporters
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2009'
...
---
_id: '3197'
abstract:
- lang: eng
text: |-
The problem of obtaining the maximum a posteriori estimate of a general discrete Markov random field (i.e., a Markov random field defined using a discrete set of labels) is known to be NP-hard. However, due to its central importance in many applications, several approximation algorithms have been proposed in the literature. In this paper, we present an analysis of three such algorithms based on convex relaxations: (i) LP-S: the linear programming (LP) relaxation proposed by Schlesinger (1976) for a special case and independently in Chekuri et al. (2001), Koster et al. (1998), and Wainwright et al. (2005) for the general case; (ii) QP-RL: the quadratic programming (QP) relaxation of Ravikumar and Lafferty (2006); and (iii) SOCP-MS: the second order cone programming (SOCP) relaxation first proposed by Muramatsu and Suzuki (2003) for two label problems and later extended by Kumar et al. (2006) for a general label set.
We show that the SOCP-MS and the QP-RL relaxations are equivalent. Furthermore, we prove that despite the flexibility in the form of the constraints/objective function offered by QP and SOCP, the LP-S relaxation strictly dominates (i.e., provides a better approximation than) QP-RL and SOCP-MS. We generalize these results by defining a large class of SOCP (and equivalent QP) relaxations which is dominated by the LP-S relaxation. Based on these results we propose some novel SOCP relaxations which define constraints using random variables that form cycles or cliques in the graphical model representation of the random field. Using some examples we show that the new SOCP relaxations strictly dominate the previous approaches.
author:
- first_name: M Pawan
full_name: Kumar, M Pawan
last_name: Kumar
- first_name: Vladimir
full_name: Vladimir Kolmogorov
id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
last_name: Kolmogorov
- first_name: Philip
full_name: Torr, Philip H
last_name: Torr
citation:
ama: Kumar MP, Kolmogorov V, Torr P. An analysis of convex relaxations for MAP estimation
of discrete MRFs. Journal of Machine Learning Research. 2009;10:71-106.
apa: Kumar, M. P., Kolmogorov, V., & Torr, P. (2009). An analysis of convex
relaxations for MAP estimation of discrete MRFs. Journal of Machine Learning
Research. Microtome Publishing.
chicago: Kumar, M Pawan, Vladimir Kolmogorov, and Philip Torr. “An Analysis of Convex
Relaxations for MAP Estimation of Discrete MRFs.” Journal of Machine Learning
Research. Microtome Publishing, 2009.
ieee: M. P. Kumar, V. Kolmogorov, and P. Torr, “An analysis of convex relaxations
for MAP estimation of discrete MRFs,” Journal of Machine Learning Research,
vol. 10. Microtome Publishing, pp. 71–106, 2009.
ista: Kumar MP, Kolmogorov V, Torr P. 2009. An analysis of convex relaxations for
MAP estimation of discrete MRFs. Journal of Machine Learning Research. 10, 71–106.
mla: Kumar, M. Pawan, et al. “An Analysis of Convex Relaxations for MAP Estimation
of Discrete MRFs.” Journal of Machine Learning Research, vol. 10, Microtome
Publishing, 2009, pp. 71–106.
short: M.P. Kumar, V. Kolmogorov, P. Torr, Journal of Machine Learning Research
10 (2009) 71–106.
date_created: 2018-12-11T12:01:57Z
date_published: 2009-01-01T00:00:00Z
date_updated: 2021-01-12T07:41:44Z
day: '01'
extern: 1
intvolume: ' 10'
main_file_link:
- open_access: '1'
url: https://hal.inria.fr/hal-00773608
month: '01'
oa: 1
page: 71 - 106
publication: Journal of Machine Learning Research
publication_status: published
publisher: Microtome Publishing
publist_id: '3484'
quality_controlled: 0
status: public
title: An analysis of convex relaxations for MAP estimation of discrete MRFs
type: journal_article
volume: 10
year: '2009'
...
---
_id: '11103'
abstract:
- lang: eng
text: Over the last decade, the nuclear envelope (NE) has emerged as a key component
in the organization and function of the nuclear genome. As many as 100 different
proteins are thought to specifically localize to this double membrane that separates
the cytoplasm and the nucleoplasm of eukaryotic cells. Selective portals through
the NE are formed at sites where the inner and outer nuclear membranes are fused,
and the coincident assembly of ∼30 proteins into nuclear pore complexes occurs.
These nuclear pore complexes are essential for the control of nucleocytoplasmic
exchange. Many of the NE and nuclear pore proteins are thought to play crucial
roles in gene regulation and thus are increasingly linked to human diseases.
article_processing_charge: No
article_type: review
author:
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
- first_name: Susan R.
full_name: Wente, Susan R.
last_name: Wente
citation:
ama: 'Hetzer M, Wente SR. Border control at the nucleus: Biogenesis and organization
of the nuclear membrane and pore complexes. Developmental Cell. 2009;17(5):606-616.
doi:10.1016/j.devcel.2009.10.007'
apa: 'Hetzer, M., & Wente, S. R. (2009). Border control at the nucleus: Biogenesis
and organization of the nuclear membrane and pore complexes. Developmental
Cell. Elsevier. https://doi.org/10.1016/j.devcel.2009.10.007'
chicago: 'Hetzer, Martin, and Susan R. Wente. “Border Control at the Nucleus: Biogenesis
and Organization of the Nuclear Membrane and Pore Complexes.” Developmental
Cell. Elsevier, 2009. https://doi.org/10.1016/j.devcel.2009.10.007.'
ieee: 'M. Hetzer and S. R. Wente, “Border control at the nucleus: Biogenesis and
organization of the nuclear membrane and pore complexes,” Developmental Cell,
vol. 17, no. 5. Elsevier, pp. 606–616, 2009.'
ista: 'Hetzer M, Wente SR. 2009. Border control at the nucleus: Biogenesis and organization
of the nuclear membrane and pore complexes. Developmental Cell. 17(5), 606–616.'
mla: 'Hetzer, Martin, and Susan R. Wente. “Border Control at the Nucleus: Biogenesis
and Organization of the Nuclear Membrane and Pore Complexes.” Developmental
Cell, vol. 17, no. 5, Elsevier, 2009, pp. 606–16, doi:10.1016/j.devcel.2009.10.007.'
short: M. Hetzer, S.R. Wente, Developmental Cell 17 (2009) 606–616.
date_created: 2022-04-07T07:53:45Z
date_published: 2009-11-17T00:00:00Z
date_updated: 2022-07-18T08:55:01Z
day: '17'
doi: 10.1016/j.devcel.2009.10.007
extern: '1'
external_id:
pmid:
- '19922866'
intvolume: ' 17'
issue: '5'
keyword:
- Developmental Biology
- Cell Biology
- General Biochemistry
- Genetics and Molecular Biology
- Molecular Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.devcel.2009.10.007
month: '11'
oa: 1
oa_version: Published Version
page: 606-616
pmid: 1
publication: Developmental Cell
publication_identifier:
issn:
- 1534-5807
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Border control at the nucleus: Biogenesis and organization of the nuclear
membrane and pore complexes'
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 17
year: '2009'
...