---
_id: '2978'
abstract:
- lang: eng
  text: |-
    Efficient zero-knowledge proofs of knowledge for group homomorphisms are essential for numerous systems in applied cryptography. Especially, Σ-protocols for proving knowledge of discrete logarithms in known and hidden order groups are of prime importance. Yet, while these proofs can be performed very efficiently within groups of known order, for hidden order groups the respective proofs are far less efficient.

    This paper shows strong evidence that this efficiency gap cannot be bridged. Namely, while there are efficient protocols allowing a prover to cheat only with negligibly small probability in the case of known order groups, we provide strong evidence that for hidden order groups this probability is bounded below by 1/2 for all efficient  Σ-protocols not using common reference strings or the like.

    We prove our results for a comprehensive class of Σ-protocols in the generic group model, and further strengthen them by investigating certain instantiations in the plain model.
alternative_title:
- LNCS
author:
- first_name: Endre
  full_name: Bangerter, Endre
  last_name: Bangerter
- first_name: Jan
  full_name: Camenisch, Jan
  last_name: Camenisch
- first_name: Stephan
  full_name: Stephan Krenn
  id: 329FCCF0-F248-11E8-B48F-1D18A9856A87
  last_name: Krenn
  orcid: 0000-0003-2835-9093
citation:
  ama: 'Bangerter E, Camenisch J, Krenn S. Efficiency Limitations for Σ-Protocols
    for Group Homomorphisms. In: Micciancio D, ed. Vol 5978. Springer; 2010:553-571.
    doi:<a href="https://doi.org/10.1007/978-3-642-11799-2">10.1007/978-3-642-11799-2</a>'
  apa: 'Bangerter, E., Camenisch, J., &#38; Krenn, S. (2010). Efficiency Limitations
    for Σ-Protocols for Group Homomorphisms. In D. Micciancio (Ed.) (Vol. 5978, pp.
    553–571). Presented at the TCC: Theory of Cryptography Conference, Springer. <a
    href="https://doi.org/10.1007/978-3-642-11799-2">https://doi.org/10.1007/978-3-642-11799-2</a>'
  chicago: Bangerter, Endre, Jan Camenisch, and Stephan Krenn. “Efficiency Limitations
    for Σ-Protocols for Group Homomorphisms.” edited by Daniele Micciancio, 5978:553–71.
    Springer, 2010. <a href="https://doi.org/10.1007/978-3-642-11799-2">https://doi.org/10.1007/978-3-642-11799-2</a>.
  ieee: 'E. Bangerter, J. Camenisch, and S. Krenn, “Efficiency Limitations for Σ-Protocols
    for Group Homomorphisms,” presented at the TCC: Theory of Cryptography Conference,
    2010, vol. 5978, pp. 553–571.'
  ista: 'Bangerter E, Camenisch J, Krenn S. 2010. Efficiency Limitations for Σ-Protocols
    for Group Homomorphisms. TCC: Theory of Cryptography Conference, LNCS, vol. 5978,
    553–571.'
  mla: Bangerter, Endre, et al. <i>Efficiency Limitations for Σ-Protocols for Group
    Homomorphisms</i>. Edited by Daniele Micciancio, vol. 5978, Springer, 2010, pp.
    553–71, doi:<a href="https://doi.org/10.1007/978-3-642-11799-2">10.1007/978-3-642-11799-2</a>.
  short: E. Bangerter, J. Camenisch, S. Krenn, in:, D. Micciancio (Ed.), Springer,
    2010, pp. 553–571.
conference:
  name: 'TCC: Theory of Cryptography Conference'
date_created: 2018-12-11T12:00:39Z
date_published: 2010-02-08T00:00:00Z
date_updated: 2021-01-12T07:40:12Z
day: '08'
doi: 10.1007/978-3-642-11799-2
editor:
- first_name: Daniele
  full_name: Micciancio, Daniele
  last_name: Micciancio
extern: 1
intvolume: '      5978'
main_file_link:
- open_access: '1'
  url: http://eprint.iacr.org/2009/595.pdf
month: '02'
oa: 1
page: 553 - 571
publication_status: published
publisher: Springer
publist_id: '3725'
quality_controlled: 0
status: public
title: Efficiency Limitations for Σ-Protocols for Group Homomorphisms
type: conference
volume: 5978
year: '2010'
...
---
_id: '2979'
abstract:
- lang: eng
  text: "Zero-knowledge proofs of knowledge (ZK-PoK) are important building blocks
    for numerous cryptographic applications. Although ZK-PoK have a high potential
    impact, their real world deployment is  typically hindered by their significant
    complexity compared to other (non-interactive) crypto primitives. Moreover, their
    design and implementation are time-consuming and error-prone.\n\nWe contribute
    to overcoming these challenges as follows: We present a comprehensive specification
    language and a compiler for ZK-PoK protocols based on Σ-protocols. The compiler
    allows the fully automatic translation of an abstract description of a proof goal
    into an executable implementation. Moreover, the compiler overcomes various restrictions
    of previous approaches, e.g., it supports the important class of exponentiation
    homomorphisms with hidden-order co-domain,  needed for privacy-preserving applications
    such as DAA. Finally, our compiler is certifying, in the sense that it automatically
    produces a formal proof of the soundness of the compiled protocol for a large
    class of protocols using the Isabelle/HOL theorem prover. \n"
acknowledgement: |-
  This work was in part funded by the European Community's Seventh Framework Programme (FP7) under grant agreement no. 216499.
  A preliminary version of the compiler can be found at http://zkc.cace-project.eu.
alternative_title:
- LNCS
author:
- first_name: José
  full_name: Almeida, José Bacelar
  last_name: Almeida
- first_name: Endre
  full_name: Bangerter, Endre
  last_name: Bangerter
- first_name: Manuel
  full_name: Barbosa, Manuel
  last_name: Barbosa
- first_name: Stephan
  full_name: Stephan Krenn
  id: 329FCCF0-F248-11E8-B48F-1D18A9856A87
  last_name: Krenn
  orcid: 0000-0003-2835-9093
- first_name: Ahmad
  full_name: Sadeghi, Ahmad-Reza
  last_name: Sadeghi
- first_name: Thomas
  full_name: Schneider, Thomas
  last_name: Schneider
citation:
  ama: 'Almeida J, Bangerter E, Barbosa M, Krenn S, Sadeghi A, Schneider T. A Certifying
    Compiler for Zero-Knowledge Proofs of Knowledge Based on Sigma-Protocols. In:
    Gritzalis D, Preneel B, Theoharidou M, eds. Vol 6345. Springer; 2010:151-167.
    doi:<a href="https://doi.org/10.1007/978-3-642-15497-3">10.1007/978-3-642-15497-3</a>'
  apa: 'Almeida, J., Bangerter, E., Barbosa, M., Krenn, S., Sadeghi, A., &#38; Schneider,
    T. (2010). A Certifying Compiler for Zero-Knowledge Proofs of Knowledge Based
    on Sigma-Protocols. In D. Gritzalis, B. Preneel, &#38; M. Theoharidou (Eds.) (Vol.
    6345, pp. 151–167). Presented at the ESORICS: European Symposium on Research in
    Computer Security, Springer. <a href="https://doi.org/10.1007/978-3-642-15497-3">https://doi.org/10.1007/978-3-642-15497-3</a>'
  chicago: Almeida, José, Endre Bangerter, Manuel Barbosa, Stephan Krenn, Ahmad Sadeghi,
    and Thomas Schneider. “A Certifying Compiler for Zero-Knowledge Proofs of Knowledge
    Based on Sigma-Protocols.” edited by Dimitris Gritzalis, Bart Preneel, and Marianthi
    Theoharidou, 6345:151–67. Springer, 2010. <a href="https://doi.org/10.1007/978-3-642-15497-3">https://doi.org/10.1007/978-3-642-15497-3</a>.
  ieee: 'J. Almeida, E. Bangerter, M. Barbosa, S. Krenn, A. Sadeghi, and T. Schneider,
    “A Certifying Compiler for Zero-Knowledge Proofs of Knowledge Based on Sigma-Protocols,”
    presented at the ESORICS: European Symposium on Research in Computer Security,
    2010, vol. 6345, pp. 151–167.'
  ista: 'Almeida J, Bangerter E, Barbosa M, Krenn S, Sadeghi A, Schneider T. 2010.
    A Certifying Compiler for Zero-Knowledge Proofs of Knowledge Based on Sigma-Protocols.
    ESORICS: European Symposium on Research in Computer Security, LNCS, vol. 6345,
    151–167.'
  mla: Almeida, José, et al. <i>A Certifying Compiler for Zero-Knowledge Proofs of
    Knowledge Based on Sigma-Protocols</i>. Edited by Dimitris Gritzalis et al., vol.
    6345, Springer, 2010, pp. 151–67, doi:<a href="https://doi.org/10.1007/978-3-642-15497-3">10.1007/978-3-642-15497-3</a>.
  short: J. Almeida, E. Bangerter, M. Barbosa, S. Krenn, A. Sadeghi, T. Schneider,
    in:, D. Gritzalis, B. Preneel, M. Theoharidou (Eds.), Springer, 2010, pp. 151–167.
conference:
  name: 'ESORICS: European Symposium on Research in Computer Security'
date_created: 2018-12-11T12:00:40Z
date_published: 2010-08-30T00:00:00Z
date_updated: 2021-01-12T07:40:13Z
day: '30'
doi: 10.1007/978-3-642-15497-3
editor:
- first_name: Dimitris
  full_name: Gritzalis, Dimitris
  last_name: Gritzalis
- first_name: Bart
  full_name: Preneel, Bart
  last_name: Preneel
- first_name: Marianthi
  full_name: Theoharidou, Marianthi
  last_name: Theoharidou
extern: 1
intvolume: '      6345'
main_file_link:
- open_access: '1'
  url: http://eprint.iacr.org/2010/339.pdf
month: '08'
oa: 1
page: 151 - 167
publication_status: published
publisher: Springer
publist_id: '3724'
quality_controlled: 0
status: public
title: A Certifying Compiler for Zero-Knowledge Proofs of Knowledge Based on Sigma-Protocols
type: conference
volume: 6345
year: '2010'
...
---
_id: '2980'
abstract:
- lang: eng
  text: "Efficient zero-knowledge proofs of knowledge (ZK-PoK) are basic\n  building
    blocks of many practical cryptographic applications such as\n  identification
    schemes, group signatures, and secure multi-party\n  computation (SMPC). Currently,
    first applications that essentially\n  rely on ZK-PoKs are being deployed in the
    real world. The most\n  prominent example is the Direct Anonymous Attestation
    (DAA)\n  protocol, which was adopted by the Trusted Computing Group (TCG) \n  and
    implemented as one of the functionalities of the cryptographic \n  chip Trusted
    Platform Module (TPM).\n\nImplementing systems using ZK-PoK turns out to be challenging,\n
    \ since ZK-PoK are significantly more complex than standard crypto\n  primitives
    (e.g., encryption and signature schemes). As a result, \n  the design-implementation
    cycles of ZK-PoK are time-consuming\n  and error-prone.\n\nTo overcome this, we
    present a compiler with corresponding languages \n  for the automatic generation
    of sound and efficient ZK-PoK based on \n  Σ-protocols. The protocol designer
    using our compiler formulates \n  the goal of a ZK-PoK proof in a high-level protocol
    specification language,\n  which abstracts away unnecessary technicalities from
    the designer. The\n  compiler then automatically generates the protocol implementation
    in \n  Java code; alternatively, the compiler can output a description of the
    \n  protocol in LaTeX which can be used for documentation or verification."
acknowledgement: This work was performed within the FP7 EU project CACE (Computer
  Aided Cryptography Engineering).
alternative_title:
- LNCS
author:
- first_name: Endre
  full_name: Bangerter, Endre
  last_name: Bangerter
- first_name: Thomas
  full_name: Briner, Thomas
  last_name: Briner
- first_name: Wilko
  full_name: Henecka, Wilko
  last_name: Henecka
- first_name: Stephan
  full_name: Stephan Krenn
  id: 329FCCF0-F248-11E8-B48F-1D18A9856A87
  last_name: Krenn
  orcid: 0000-0003-2835-9093
- first_name: Ahmad
  full_name: Sadeghi, Ahmad-Reza
  last_name: Sadeghi
- first_name: Thomas
  full_name: Schneider, Thomas
  last_name: Schneider
citation:
  ama: 'Bangerter E, Briner T, Henecka W, Krenn S, Sadeghi A, Schneider T. Automatic
    Generation of Sigma-Protocols. In: Martinelli F, Preneel B, eds. Vol 6391. Springer;
    2010:67-82. doi:<a href="https://doi.org/10.1007/978-3-642-16441-5">10.1007/978-3-642-16441-5</a>'
  apa: 'Bangerter, E., Briner, T., Henecka, W., Krenn, S., Sadeghi, A., &#38; Schneider,
    T. (2010). Automatic Generation of Sigma-Protocols. In F. Martinelli &#38; B.
    Preneel (Eds.) (Vol. 6391, pp. 67–82). Presented at the EuroPKI: Public Key Infrastructures,
    Services and Applications, Springer. <a href="https://doi.org/10.1007/978-3-642-16441-5">https://doi.org/10.1007/978-3-642-16441-5</a>'
  chicago: Bangerter, Endre, Thomas Briner, Wilko Henecka, Stephan Krenn, Ahmad Sadeghi,
    and Thomas Schneider. “Automatic Generation of Sigma-Protocols.” edited by Fabio
    Martinelli and Bart Preneel, 6391:67–82. Springer, 2010. <a href="https://doi.org/10.1007/978-3-642-16441-5">https://doi.org/10.1007/978-3-642-16441-5</a>.
  ieee: 'E. Bangerter, T. Briner, W. Henecka, S. Krenn, A. Sadeghi, and T. Schneider,
    “Automatic Generation of Sigma-Protocols,” presented at the EuroPKI: Public Key
    Infrastructures, Services and Applications, 2010, vol. 6391, pp. 67–82.'
  ista: 'Bangerter E, Briner T, Henecka W, Krenn S, Sadeghi A, Schneider T. 2010.
    Automatic Generation of Sigma-Protocols. EuroPKI: Public Key Infrastructures,
    Services and Applications, LNCS, vol. 6391, 67–82.'
  mla: Bangerter, Endre, et al. <i>Automatic Generation of Sigma-Protocols</i>. Edited
    by Fabio Martinelli and Bart Preneel, vol. 6391, Springer, 2010, pp. 67–82, doi:<a
    href="https://doi.org/10.1007/978-3-642-16441-5">10.1007/978-3-642-16441-5</a>.
  short: E. Bangerter, T. Briner, W. Henecka, S. Krenn, A. Sadeghi, T. Schneider,
    in:, F. Martinelli, B. Preneel (Eds.), Springer, 2010, pp. 67–82.
conference:
  name: 'EuroPKI: Public Key Infrastructures, Services and Applications'
date_created: 2018-12-11T12:00:40Z
date_published: 2010-10-25T00:00:00Z
date_updated: 2021-01-12T07:40:13Z
day: '25'
doi: 10.1007/978-3-642-16441-5
editor:
- first_name: Fabio
  full_name: Martinelli, Fabio
  last_name: Martinelli
- first_name: Bart
  full_name: Preneel, Bart
  last_name: Preneel
extern: 1
intvolume: '      6391'
main_file_link:
- open_access: '1'
  url: http://eprint.iacr.org/2008/471.pdf
month: '10'
oa: 1
page: 67 - 82
publication_status: published
publisher: Springer
publist_id: '3723'
quality_controlled: 0
status: public
title: Automatic Generation of Sigma-Protocols
type: conference
volume: 6391
year: '2010'
...
---
_id: '3072'
abstract:
- lang: eng
  text: Development of plants and their adaptive capacity towards ever‐changing environmental
    conditions largely depend on the spatial distribution of the plant hormone auxin.
    At the cellular level, various internal and external signals are translated into
    specific changes in the polar, subcellular localization of auxin transporters
    from the PIN family thereby directing and redirecting the intercellular fluxes
    of auxin. The current model of polar targeting of PIN proteins towards different
    plasma membrane domains encompasses apolar secretion of newly synthesized PINs
    followed by endocytosis and recycling back to the plasma membrane in a polarized
    manner. In this review, we follow the subcellular march of the PINs and highlight
    the cellular and molecular mechanisms behind polar foraging and subcellular trafficking
    pathways. Also, the entry points for different signals and regulations including
    by auxin itself will be discussed within the context of morphological and developmental
    consequences of polar targeting and subcellular trafficking.
author:
- first_name: Wim
  full_name: Grunewald, Wim
  last_name: Grunewald
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: 'Grunewald W, Friml J. The march of the PINs: Developmental plasticity by dynamic
    polar targeting in plant cells. <i>EMBO Journal</i>. 2010;29(16):2700-2714. doi:<a
    href="https://doi.org/10.1038/emboj.2010.181">10.1038/emboj.2010.181</a>'
  apa: 'Grunewald, W., &#38; Friml, J. (2010). The march of the PINs: Developmental
    plasticity by dynamic polar targeting in plant cells. <i>EMBO Journal</i>. Wiley-Blackwell.
    <a href="https://doi.org/10.1038/emboj.2010.181">https://doi.org/10.1038/emboj.2010.181</a>'
  chicago: 'Grunewald, Wim, and Jiří Friml. “The March of the PINs: Developmental
    Plasticity by Dynamic Polar Targeting in Plant Cells.” <i>EMBO Journal</i>. Wiley-Blackwell,
    2010. <a href="https://doi.org/10.1038/emboj.2010.181">https://doi.org/10.1038/emboj.2010.181</a>.'
  ieee: 'W. Grunewald and J. Friml, “The march of the PINs: Developmental plasticity
    by dynamic polar targeting in plant cells,” <i>EMBO Journal</i>, vol. 29, no.
    16. Wiley-Blackwell, pp. 2700–2714, 2010.'
  ista: 'Grunewald W, Friml J. 2010. The march of the PINs: Developmental plasticity
    by dynamic polar targeting in plant cells. EMBO Journal. 29(16), 2700–2714.'
  mla: 'Grunewald, Wim, and Jiří Friml. “The March of the PINs: Developmental Plasticity
    by Dynamic Polar Targeting in Plant Cells.” <i>EMBO Journal</i>, vol. 29, no.
    16, Wiley-Blackwell, 2010, pp. 2700–14, doi:<a href="https://doi.org/10.1038/emboj.2010.181">10.1038/emboj.2010.181</a>.'
  short: W. Grunewald, J. Friml, EMBO Journal 29 (2010) 2700–2714.
date_created: 2018-12-11T12:01:12Z
date_published: 2010-08-18T00:00:00Z
date_updated: 2021-01-12T07:40:51Z
day: '18'
doi: 10.1038/emboj.2010.181
extern: '1'
external_id:
  pmid:
  - '20717140'
intvolume: '        29'
issue: '16'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2924653/
month: '08'
oa: 1
oa_version: Published Version
page: 2700 - 2714
pmid: 1
publication: EMBO Journal
publication_status: published
publisher: Wiley-Blackwell
publist_id: '3629'
quality_controlled: '1'
status: public
title: 'The march of the PINs: Developmental plasticity by dynamic polar targeting
  in plant cells'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 29
year: '2010'
...
---
_id: '3077'
author:
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Angharad
  full_name: Jones, Angharad
  last_name: Jones
citation:
  ama: 'Friml J, Jones A. Endoplasmic reticulum: The rising compartment in auxin biology.
    <i>Plant Physiology</i>. 2010;154(2):458-462. doi:<a href="https://doi.org/10.1104/pp.110.161380">10.1104/pp.110.161380</a>'
  apa: 'Friml, J., &#38; Jones, A. (2010). Endoplasmic reticulum: The rising compartment
    in auxin biology. <i>Plant Physiology</i>. American Society of Plant Biologists.
    <a href="https://doi.org/10.1104/pp.110.161380">https://doi.org/10.1104/pp.110.161380</a>'
  chicago: 'Friml, Jiří, and Angharad Jones. “Endoplasmic Reticulum: The Rising Compartment
    in Auxin Biology.” <i>Plant Physiology</i>. American Society of Plant Biologists,
    2010. <a href="https://doi.org/10.1104/pp.110.161380">https://doi.org/10.1104/pp.110.161380</a>.'
  ieee: 'J. Friml and A. Jones, “Endoplasmic reticulum: The rising compartment in
    auxin biology,” <i>Plant Physiology</i>, vol. 154, no. 2. American Society of
    Plant Biologists, pp. 458–462, 2010.'
  ista: 'Friml J, Jones A. 2010. Endoplasmic reticulum: The rising compartment in
    auxin biology. Plant Physiology. 154(2), 458–462.'
  mla: 'Friml, Jiří, and Angharad Jones. “Endoplasmic Reticulum: The Rising Compartment
    in Auxin Biology.” <i>Plant Physiology</i>, vol. 154, no. 2, American Society
    of Plant Biologists, 2010, pp. 458–62, doi:<a href="https://doi.org/10.1104/pp.110.161380">10.1104/pp.110.161380</a>.'
  short: J. Friml, A. Jones, Plant Physiology 154 (2010) 458–462.
date_created: 2018-12-11T12:01:14Z
date_published: 2010-10-01T00:00:00Z
date_updated: 2021-01-12T07:40:53Z
day: '01'
doi: 10.1104/pp.110.161380
extern: '1'
external_id:
  pmid:
  - '20921163'
intvolume: '       154'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pubmed/20921163
month: '10'
oa: 1
oa_version: Published Version
page: 458 - 462
pmid: 1
publication: Plant Physiology
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '3624'
status: public
title: 'Endoplasmic reticulum: The rising compartment in auxin biology'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 154
year: '2010'
...
---
_id: '3303'
abstract:
- lang: eng
  text: 'Biological traits result in part from interactions between different genetic
    loci. This can lead to sign epistasis, in which a beneficial adaptation involves
    a combination of individually deleterious or neutral mutations; in this case,
    a population must cross a “fitness valley” to adapt. Recombination can assist
    this process by combining mutations from different individuals or retard it by
    breaking up the adaptive combination. Here, we analyze the simplest fitness valley,
    in which an adaptation requires one mutation at each of two loci to provide a
    fitness benefit. We present a theoretical analysis of the effect of recombination
    on the valley-crossing process across the full spectrum of possible parameter
    regimes. We find that low recombination rates can speed up valley crossing relative
    to the asexual case, while higher recombination rates slow down valley crossing,
    with the transition between the two regimes occurring when the recombination rate
    between the loci is approximately equal to the selective advantage provided by
    the adaptation. In large populations, if the recombination rate is high and selection
    against single mutants is substantial, the time to cross the valley grows exponentially
    with population size, effectively meaning that the population cannot acquire the
    adaptation. Recombination at the optimal (low) rate can reduce the valley-crossing
    time by up to several orders of magnitude relative to that in an asexual population. '
acknowledgement: "This work was supported in part by a Robert N. Noyce Stanford Graduate
  Fellowship and European Research Council grant 250152 (to D.B.W.) and by National
  Institutes of Health grant GM 28016 (to M.W.F.).\r\nWe thank Michael Desai for many
  ideas and discussions and are grateful to Joanna Masel and an anonymous reviewer
  for their helpful suggestions. "
author:
- first_name: Daniel
  full_name: Weissman, Daniel
  id: 2D0CE020-F248-11E8-B48F-1D18A9856A87
  last_name: Weissman
- first_name: Marcus
  full_name: Feldman, Marcus
  last_name: Feldman
- first_name: Daniel
  full_name: Fisher, Daniel
  last_name: Fisher
citation:
  ama: Weissman D, Feldman M, Fisher D. The rate of fitness-valley crossing in sexual
    populations. <i>Genetics</i>. 2010;186(4):1389-1410. doi:<a href="https://doi.org/10.1534/genetics.110.123240">10.1534/genetics.110.123240</a>
  apa: Weissman, D., Feldman, M., &#38; Fisher, D. (2010). The rate of fitness-valley
    crossing in sexual populations. <i>Genetics</i>. Genetics Society of America.
    <a href="https://doi.org/10.1534/genetics.110.123240">https://doi.org/10.1534/genetics.110.123240</a>
  chicago: Weissman, Daniel, Marcus Feldman, and Daniel Fisher. “The Rate of Fitness-Valley
    Crossing in Sexual Populations.” <i>Genetics</i>. Genetics Society of America,
    2010. <a href="https://doi.org/10.1534/genetics.110.123240">https://doi.org/10.1534/genetics.110.123240</a>.
  ieee: D. Weissman, M. Feldman, and D. Fisher, “The rate of fitness-valley crossing
    in sexual populations,” <i>Genetics</i>, vol. 186, no. 4. Genetics Society of
    America, pp. 1389–1410, 2010.
  ista: Weissman D, Feldman M, Fisher D. 2010. The rate of fitness-valley crossing
    in sexual populations. Genetics. 186(4), 1389–1410.
  mla: Weissman, Daniel, et al. “The Rate of Fitness-Valley Crossing in Sexual Populations.”
    <i>Genetics</i>, vol. 186, no. 4, Genetics Society of America, 2010, pp. 1389–410,
    doi:<a href="https://doi.org/10.1534/genetics.110.123240">10.1534/genetics.110.123240</a>.
  short: D. Weissman, M. Feldman, D. Fisher, Genetics 186 (2010) 1389–1410.
date_created: 2018-12-11T12:02:33Z
date_published: 2010-12-01T00:00:00Z
date_updated: 2021-01-12T07:42:31Z
day: '01'
department:
- _id: NiBa
doi: 10.1534/genetics.110.123240
ec_funded: 1
intvolume: '       186'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2998319/
month: '12'
oa: 1
oa_version: Submitted Version
page: 1389 - 1410
project:
- _id: 25B07788-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '250152'
  name: Limits to selection in biology and in evolutionary computation
publication: Genetics
publication_status: published
publisher: Genetics Society of America
publist_id: '3337'
quality_controlled: '1'
scopus_import: 1
status: public
title: The rate of fitness-valley crossing in sexual populations
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 186
year: '2010'
...
---
_id: '3306'
abstract:
- lang: eng
  text: We use methods from combinatorics and algebraic statistics to study analogues
    of birth-and-death processes that have as their state space a finite subset of
    the m-dimensional lattice and for which the m matrices that record the transition
    probabilities in each of the lattice directions commute pairwise. One reason such
    processes are of interest is that the transition matrix is straightforward to
    diagonalize, and hence it is easy to compute n step transition probabilities.
    The set of commuting birth-and-death processes decomposes as a union of toric
    varieties, with the main component being the closure of all processes whose nearest
    neighbor transition probabilities are positive. We exhibit an explicit monomial
    parametrization for this main component, and we explore the boundary components
    using primary decomposition.
acknowledgement: Steven N. Evans was supported in part by NSF Grants DMS-04-05778
  and DMS-09-07630. Bernd Sturmfels was supported in part by NSF Grants DMS-04-56960
  and DMS-07-57236. Caroline Uhler was supported by an International Fulbright Science
  and Technology Fellowship.
author:
- first_name: Steven
  full_name: Evans, Steven N
  last_name: Evans
- first_name: Bernd
  full_name: Sturmfels, Bernd
  last_name: Sturmfels
- first_name: Caroline
  full_name: Caroline Uhler
  id: 49ADD78E-F248-11E8-B48F-1D18A9856A87
  last_name: Uhler
  orcid: 0000-0002-7008-0216
citation:
  ama: Evans S, Sturmfels B, Uhler C. Commuting birth and death processes. <i>The
    Annals of Applied Probability</i>. 2010;20:238-266. doi:<a href="https://doi.org/10.1214/09-AAP615">10.1214/09-AAP615</a>
  apa: Evans, S., Sturmfels, B., &#38; Uhler, C. (2010). Commuting birth and death
    processes. <i>The Annals of Applied Probability</i>. Institute of Mathematical
    Statistics. <a href="https://doi.org/10.1214/09-AAP615">https://doi.org/10.1214/09-AAP615</a>
  chicago: Evans, Steven, Bernd Sturmfels, and Caroline Uhler. “Commuting Birth and
    Death Processes.” <i>The Annals of Applied Probability</i>. Institute of Mathematical
    Statistics, 2010. <a href="https://doi.org/10.1214/09-AAP615">https://doi.org/10.1214/09-AAP615</a>.
  ieee: S. Evans, B. Sturmfels, and C. Uhler, “Commuting birth and death processes,”
    <i>The Annals of Applied Probability</i>, vol. 20. Institute of Mathematical Statistics,
    pp. 238–266, 2010.
  ista: Evans S, Sturmfels B, Uhler C. 2010. Commuting birth and death processes.
    The Annals of Applied Probability. 20, 238–266.
  mla: Evans, Steven, et al. “Commuting Birth and Death Processes.” <i>The Annals
    of Applied Probability</i>, vol. 20, Institute of Mathematical Statistics, 2010,
    pp. 238–66, doi:<a href="https://doi.org/10.1214/09-AAP615">10.1214/09-AAP615</a>.
  short: S. Evans, B. Sturmfels, C. Uhler, The Annals of Applied Probability 20 (2010)
    238–266.
date_created: 2018-12-11T12:02:35Z
date_published: 2010-01-01T00:00:00Z
date_updated: 2021-01-12T07:42:32Z
day: '01'
doi: 10.1214/09-AAP615
extern: 1
intvolume: '        20'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0812.2724
month: '01'
oa: 1
page: 238 - 266
publication: The Annals of Applied Probability
publication_status: published
publisher: Institute of Mathematical Statistics
publist_id: '3334'
quality_controlled: 0
status: public
title: Commuting birth and death processes
type: journal_article
volume: 20
year: '2010'
...
---
_id: '3308'
abstract:
- lang: eng
  text: We study multivariate normal models that are described by linear constraints
    on the inverse of the covariance matrix. Maximum likelihood estimation for such
    models leads to the problem of maximizing the determinant function over a spectrahedron,
    and to the problem of characterizing the image of the positive definite cone under
    an arbitrary linear projection. These problems at the interface of statistics
    and optimization are here examined from the perspective of convex algebraic geometry.
acknowledgement: B. Sturmfels is supported in part by NSF grants DMS-0456960 and DMS-0757236.
  C. Uhler is supported by an International Fulbright Science and Technology Fellowship.
author:
- first_name: Bernd
  full_name: Sturmfels, Bernd
  last_name: Sturmfels
- first_name: Caroline
  full_name: Caroline Uhler
  id: 49ADD78E-F248-11E8-B48F-1D18A9856A87
  last_name: Uhler
  orcid: 0000-0002-7008-0216
citation:
  ama: Sturmfels B, Uhler C. Multivariate Gaussians, semidefinite matrix completion,
    and convex algebraic geometry. <i>Annals of the Institute of Statistical Mathematics</i>.
    2010;62(4):603-638. doi:<a href="https://doi.org/10.1007/s10463-010-0295-4">10.1007/s10463-010-0295-4</a>
  apa: Sturmfels, B., &#38; Uhler, C. (2010). Multivariate Gaussians, semidefinite
    matrix completion, and convex algebraic geometry. <i>Annals of the Institute of
    Statistical Mathematics</i>. Springer. <a href="https://doi.org/10.1007/s10463-010-0295-4">https://doi.org/10.1007/s10463-010-0295-4</a>
  chicago: Sturmfels, Bernd, and Caroline Uhler. “Multivariate Gaussians, Semidefinite
    Matrix Completion, and Convex Algebraic Geometry.” <i>Annals of the Institute
    of Statistical Mathematics</i>. Springer, 2010. <a href="https://doi.org/10.1007/s10463-010-0295-4">https://doi.org/10.1007/s10463-010-0295-4</a>.
  ieee: B. Sturmfels and C. Uhler, “Multivariate Gaussians, semidefinite matrix completion,
    and convex algebraic geometry,” <i>Annals of the Institute of Statistical Mathematics</i>,
    vol. 62, no. 4. Springer, pp. 603–638, 2010.
  ista: Sturmfels B, Uhler C. 2010. Multivariate Gaussians, semidefinite matrix completion,
    and convex algebraic geometry. Annals of the Institute of Statistical Mathematics.
    62(4), 603–638.
  mla: Sturmfels, Bernd, and Caroline Uhler. “Multivariate Gaussians, Semidefinite
    Matrix Completion, and Convex Algebraic Geometry.” <i>Annals of the Institute
    of Statistical Mathematics</i>, vol. 62, no. 4, Springer, 2010, pp. 603–38, doi:<a
    href="https://doi.org/10.1007/s10463-010-0295-4">10.1007/s10463-010-0295-4</a>.
  short: B. Sturmfels, C. Uhler, Annals of the Institute of Statistical Mathematics
    62 (2010) 603–638.
date_created: 2018-12-11T12:02:35Z
date_published: 2010-08-01T00:00:00Z
date_updated: 2021-01-12T07:42:33Z
day: '01'
doi: 10.1007/s10463-010-0295-4
extern: 1
intvolume: '        62'
issue: '4'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0906.3529
month: '08'
oa: 1
page: 603 - 638
publication: Annals of the Institute of Statistical Mathematics
publication_status: published
publisher: Springer
publist_id: '3332'
quality_controlled: 0
status: public
title: Multivariate Gaussians, semidefinite matrix completion, and convex algebraic
  geometry
type: journal_article
volume: 62
year: '2010'
...
---
_id: '10908'
abstract:
- lang: eng
  text: We present ABC, a software tool for automatically computing symbolic upper
    bounds on the number of iterations of nested program loops. The system combines
    static analysis of programs with symbolic summation techniques to derive loop
    invariant relations between program variables. Iteration bounds are obtained from
    the inferred invariants, by replacing variables with bounds on their greatest
    values. We have successfully applied ABC to a large number of examples. The derived
    symbolic bounds express non-trivial polynomial relations over loop variables.
    We also report on results to automatically infer symbolic expressions over harmonic
    numbers as upper bounds on loop iteration counts.
acknowledgement: This work was supported in part by the Swiss NSF. The fourth author
  is supported by an FWF Hertha Firnberg Research grant (T425-N23).
article_processing_charge: No
author:
- first_name: Régis
  full_name: Blanc, Régis
  last_name: Blanc
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Thibaud
  full_name: Hottelier, Thibaud
  last_name: Hottelier
- first_name: Laura
  full_name: Kovács, Laura
  last_name: Kovács
citation:
  ama: 'Blanc R, Henzinger TA, Hottelier T, Kovács L. ABC: Algebraic Bound Computation
    for loops. In: Clarke EM, Voronkov A, eds. <i>Logic for Programming, Artificial
    Intelligence, and Reasoning</i>. Vol 6355. LNCS. Berlin, Heidelberg: Springer
    Nature; 2010:103-118. doi:<a href="https://doi.org/10.1007/978-3-642-17511-4_7">10.1007/978-3-642-17511-4_7</a>'
  apa: 'Blanc, R., Henzinger, T. A., Hottelier, T., &#38; Kovács, L. (2010). ABC:
    Algebraic Bound Computation for loops. In E. M. Clarke &#38; A. Voronkov (Eds.),
    <i>Logic for Programming, Artificial Intelligence, and Reasoning</i> (Vol. 6355,
    pp. 103–118). Berlin, Heidelberg: Springer Nature. <a href="https://doi.org/10.1007/978-3-642-17511-4_7">https://doi.org/10.1007/978-3-642-17511-4_7</a>'
  chicago: 'Blanc, Régis, Thomas A Henzinger, Thibaud Hottelier, and Laura Kovács.
    “ABC: Algebraic Bound Computation for Loops.” In <i>Logic for Programming, Artificial
    Intelligence, and Reasoning</i>, edited by Edmund M Clarke and Andrei Voronkov,
    6355:103–18. LNCS. Berlin, Heidelberg: Springer Nature, 2010. <a href="https://doi.org/10.1007/978-3-642-17511-4_7">https://doi.org/10.1007/978-3-642-17511-4_7</a>.'
  ieee: 'R. Blanc, T. A. Henzinger, T. Hottelier, and L. Kovács, “ABC: Algebraic Bound
    Computation for loops,” in <i>Logic for Programming, Artificial Intelligence,
    and Reasoning</i>, Dakar, Senegal, 2010, vol. 6355, pp. 103–118.'
  ista: 'Blanc R, Henzinger TA, Hottelier T, Kovács L. 2010. ABC: Algebraic Bound
    Computation for loops. Logic for Programming, Artificial Intelligence, and Reasoning.
    LPAR: Conference on Logic for Programming, Artificial Intelligence and ReasoningLNCS
    vol. 6355, 103–118.'
  mla: 'Blanc, Régis, et al. “ABC: Algebraic Bound Computation for Loops.” <i>Logic
    for Programming, Artificial Intelligence, and Reasoning</i>, edited by Edmund
    M Clarke and Andrei Voronkov, vol. 6355, Springer Nature, 2010, pp. 103–18, doi:<a
    href="https://doi.org/10.1007/978-3-642-17511-4_7">10.1007/978-3-642-17511-4_7</a>.'
  short: R. Blanc, T.A. Henzinger, T. Hottelier, L. Kovács, in:, E.M. Clarke, A. Voronkov
    (Eds.), Logic for Programming, Artificial Intelligence, and Reasoning, Springer
    Nature, Berlin, Heidelberg, 2010, pp. 103–118.
conference:
  end_date: 2010-05-01
  location: Dakar, Senegal
  name: 'LPAR: Conference on Logic for Programming, Artificial Intelligence and Reasoning'
  start_date: 2010-04-25
date_created: 2022-03-21T08:14:35Z
date_published: 2010-05-01T00:00:00Z
date_updated: 2022-06-13T07:44:21Z
day: '01'
department:
- _id: ToHe
doi: 10.1007/978-3-642-17511-4_7
editor:
- first_name: Edmund M
  full_name: Clarke, Edmund M
  last_name: Clarke
- first_name: Andrei
  full_name: Voronkov, Andrei
  last_name: Voronkov
intvolume: '      6355'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://infoscience.epfl.ch/record/186096
month: '05'
oa: 1
oa_version: Submitted Version
page: 103-118
place: Berlin, Heidelberg
publication: Logic for Programming, Artificial Intelligence, and Reasoning
publication_identifier:
  eisbn:
  - '9783642175114'
  eissn:
  - 1611-3349
  isbn:
  - '9783642175107'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
series_title: LNCS
status: public
title: 'ABC: Algebraic Bound Computation for loops'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6355
year: '2010'
...
---
_id: '11098'
article_processing_charge: No
article_type: original
author:
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Hetzer M. The role of the nuclear pore complex in aging of post-mitotic cells.
    <i>Aging</i>. 2010;2(2):74-75. doi:<a href="https://doi.org/10.18632/aging.100125">10.18632/aging.100125</a>
  apa: Hetzer, M. (2010). The role of the nuclear pore complex in aging of post-mitotic
    cells. <i>Aging</i>. Impact Journals. <a href="https://doi.org/10.18632/aging.100125">https://doi.org/10.18632/aging.100125</a>
  chicago: Hetzer, Martin. “The Role of the Nuclear Pore Complex in Aging of Post-Mitotic
    Cells.” <i>Aging</i>. Impact Journals, 2010. <a href="https://doi.org/10.18632/aging.100125">https://doi.org/10.18632/aging.100125</a>.
  ieee: M. Hetzer, “The role of the nuclear pore complex in aging of post-mitotic
    cells,” <i>Aging</i>, vol. 2, no. 2. Impact Journals, pp. 74–75, 2010.
  ista: Hetzer M. 2010. The role of the nuclear pore complex in aging of post-mitotic
    cells. Aging. 2(2), 74–75.
  mla: Hetzer, Martin. “The Role of the Nuclear Pore Complex in Aging of Post-Mitotic
    Cells.” <i>Aging</i>, vol. 2, no. 2, Impact Journals, 2010, pp. 74–75, doi:<a
    href="https://doi.org/10.18632/aging.100125">10.18632/aging.100125</a>.
  short: M. Hetzer, Aging 2 (2010) 74–75.
date_created: 2022-04-07T07:52:58Z
date_published: 2010-02-01T00:00:00Z
date_updated: 2022-07-18T08:54:15Z
day: '01'
doi: 10.18632/aging.100125
extern: '1'
external_id:
  pmid:
  - '20354266'
intvolume: '         2'
issue: '2'
keyword:
- Cell Biology
- Aging
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.18632/aging.100125
month: '02'
oa: 1
oa_version: Published Version
page: 74-75
pmid: 1
publication: Aging
publication_identifier:
  issn:
  - 1945-4589
publication_status: published
publisher: Impact Journals
quality_controlled: '1'
scopus_import: '1'
status: public
title: The role of the nuclear pore complex in aging of post-mitotic cells
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 2
year: '2010'
...
---
_id: '11101'
abstract:
- lang: eng
  text: In metazoa, nuclear pore complexes (NPCs) assemble from disassembled precursors
    into a reforming nuclear envelope (NE) at the end of mitosis and into growing
    intact NEs during interphase. Here, we show via RNAi-mediated knockdown that ELYS,
    a nucleoporin critical for the recruitment of the essential Nup107/160 complex
    to chromatin, is required for NPC assembly at the end of mitosis but not during
    interphase. Conversely, the transmembrane nucleoporin POM121 is critical for the
    incorporation of the Nup107/160 complex into new assembly sites specifically during
    interphase. Strikingly, recruitment of the Nup107/160 complex to an intact NE
    involves a membrane curvature-sensing domain of its constituent Nup133, which
    is not required for postmitotic NPC formation. Our results suggest that in organisms
    with open mitosis, NPCs assemble via two distinct mechanisms to accommodate cell
    cycle-dependent differences in NE topology.
article_processing_charge: No
article_type: original
author:
- first_name: Christine M.
  full_name: Doucet, Christine M.
  last_name: Doucet
- first_name: Jessica A.
  full_name: Talamas, Jessica A.
  last_name: Talamas
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Doucet CM, Talamas JA, Hetzer M. Cell cycle-dependent differences in nuclear
    pore complex assembly in metazoa. <i>Cell</i>. 2010;141(6):1030-1041. doi:<a href="https://doi.org/10.1016/j.cell.2010.04.036">10.1016/j.cell.2010.04.036</a>
  apa: Doucet, C. M., Talamas, J. A., &#38; Hetzer, M. (2010). Cell cycle-dependent
    differences in nuclear pore complex assembly in metazoa. <i>Cell</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.cell.2010.04.036">https://doi.org/10.1016/j.cell.2010.04.036</a>
  chicago: Doucet, Christine M., Jessica A. Talamas, and Martin Hetzer. “Cell Cycle-Dependent
    Differences in Nuclear Pore Complex Assembly in Metazoa.” <i>Cell</i>. Elsevier,
    2010. <a href="https://doi.org/10.1016/j.cell.2010.04.036">https://doi.org/10.1016/j.cell.2010.04.036</a>.
  ieee: C. M. Doucet, J. A. Talamas, and M. Hetzer, “Cell cycle-dependent differences
    in nuclear pore complex assembly in metazoa,” <i>Cell</i>, vol. 141, no. 6. Elsevier,
    pp. 1030–1041, 2010.
  ista: Doucet CM, Talamas JA, Hetzer M. 2010. Cell cycle-dependent differences in
    nuclear pore complex assembly in metazoa. Cell. 141(6), 1030–1041.
  mla: Doucet, Christine M., et al. “Cell Cycle-Dependent Differences in Nuclear Pore
    Complex Assembly in Metazoa.” <i>Cell</i>, vol. 141, no. 6, Elsevier, 2010, pp.
    1030–41, doi:<a href="https://doi.org/10.1016/j.cell.2010.04.036">10.1016/j.cell.2010.04.036</a>.
  short: C.M. Doucet, J.A. Talamas, M. Hetzer, Cell 141 (2010) 1030–1041.
date_created: 2022-04-07T07:53:29Z
date_published: 2010-06-11T00:00:00Z
date_updated: 2022-07-18T08:54:52Z
day: '11'
doi: 10.1016/j.cell.2010.04.036
extern: '1'
external_id:
  pmid:
  - '20550937'
intvolume: '       141'
issue: '6'
keyword:
- General Biochemistry
- Genetics and Molecular Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.cell.2010.04.036
month: '06'
oa: 1
oa_version: Published Version
page: 1030-1041
pmid: 1
publication: Cell
publication_identifier:
  issn:
  - 0092-8674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cell cycle-dependent differences in nuclear pore complex assembly in metazoa
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 141
year: '2010'
...
---
_id: '11102'
abstract:
- lang: eng
  text: Nuclear pore complexes have recently been shown to play roles in gene activation;
    however their potential involvement in metazoan transcription remains unclear.
    Here we show that the nucleoporins Sec13, Nup98, and Nup88, as well as a group
    of FG-repeat nucleoporins, bind to the Drosophila genome at functionally distinct
    loci that often do not represent nuclear envelope contact sites. Whereas Nup88
    localizes to silent loci, Sec13, Nup98, and a subset of FG-repeat nucleoporins
    bind to developmentally regulated genes undergoing transcription induction. Strikingly,
    RNAi-mediated knockdown of intranuclear Sec13 and Nup98 specifically inhibits
    transcription of their target genes and prevents efficient reactivation of transcription
    after heat shock, suggesting an essential role of NPC components in regulating
    complex gene expression programs of multicellular organisms.
article_processing_charge: No
article_type: original
author:
- first_name: Maya
  full_name: Capelson, Maya
  last_name: Capelson
- first_name: Yun
  full_name: Liang, Yun
  last_name: Liang
- first_name: Roberta
  full_name: Schulte, Roberta
  last_name: Schulte
- first_name: William
  full_name: Mair, William
  last_name: Mair
- first_name: Ulrich
  full_name: Wagner, Ulrich
  last_name: Wagner
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Capelson M, Liang Y, Schulte R, Mair W, Wagner U, Hetzer M. Chromatin-bound
    nuclear pore components regulate gene expression in higher eukaryotes. <i>Cell</i>.
    2010;140(3):372-383. doi:<a href="https://doi.org/10.1016/j.cell.2009.12.054">10.1016/j.cell.2009.12.054</a>
  apa: Capelson, M., Liang, Y., Schulte, R., Mair, W., Wagner, U., &#38; Hetzer, M.
    (2010). Chromatin-bound nuclear pore components regulate gene expression in higher
    eukaryotes. <i>Cell</i>. Elsevier. <a href="https://doi.org/10.1016/j.cell.2009.12.054">https://doi.org/10.1016/j.cell.2009.12.054</a>
  chicago: Capelson, Maya, Yun Liang, Roberta Schulte, William Mair, Ulrich Wagner,
    and Martin Hetzer. “Chromatin-Bound Nuclear Pore Components Regulate Gene Expression
    in Higher Eukaryotes.” <i>Cell</i>. Elsevier, 2010. <a href="https://doi.org/10.1016/j.cell.2009.12.054">https://doi.org/10.1016/j.cell.2009.12.054</a>.
  ieee: M. Capelson, Y. Liang, R. Schulte, W. Mair, U. Wagner, and M. Hetzer, “Chromatin-bound
    nuclear pore components regulate gene expression in higher eukaryotes,” <i>Cell</i>,
    vol. 140, no. 3. Elsevier, pp. 372–383, 2010.
  ista: Capelson M, Liang Y, Schulte R, Mair W, Wagner U, Hetzer M. 2010. Chromatin-bound
    nuclear pore components regulate gene expression in higher eukaryotes. Cell. 140(3),
    372–383.
  mla: Capelson, Maya, et al. “Chromatin-Bound Nuclear Pore Components Regulate Gene
    Expression in Higher Eukaryotes.” <i>Cell</i>, vol. 140, no. 3, Elsevier, 2010,
    pp. 372–83, doi:<a href="https://doi.org/10.1016/j.cell.2009.12.054">10.1016/j.cell.2009.12.054</a>.
  short: M. Capelson, Y. Liang, R. Schulte, W. Mair, U. Wagner, M. Hetzer, Cell 140
    (2010) 372–383.
date_created: 2022-04-07T07:53:36Z
date_published: 2010-02-05T00:00:00Z
date_updated: 2022-07-18T08:55:03Z
day: '05'
doi: 10.1016/j.cell.2009.12.054
extern: '1'
external_id:
  pmid:
  - '20144761'
intvolume: '       140'
issue: '3'
keyword:
- General Biochemistry
- Genetics and Molecular Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.cell.2009.12.054
month: '02'
oa: 1
oa_version: Published Version
page: 372-383
pmid: 1
publication: Cell
publication_identifier:
  issn:
  - 0092-8674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Chromatin-bound nuclear pore components regulate gene expression in higher
  eukaryotes
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 140
year: '2010'
...
---
_id: '11797'
abstract:
- lang: eng
  text: "Inspired by online ad allocation, we study online stochastic packing integer
    programs from theoretical and practical standpoints. We first present a near-optimal
    online algorithm for a general class of packing integer programs which model various
    online resource allocation problems including online variants of routing, ad allocations,
    generalized assignment, and combinatorial auctions. As our main theoretical result,
    we prove that a simple dual training-based algorithm achieves a (1 − o(1))-approximation
    guarantee in the random order stochastic model. This is a significant improvement
    over logarithmic or constant-factor approximations for the adversarial variants
    of the same problems (e.g. factor 1−1\U0001D452 for online ad allocation, and
    log(m) for online routing). We then focus on the online display ad allocation
    problem and study the efficiency and fairness of various training-based and online
    allocation algorithms on data sets collected from real-life display ad allocation
    system. Our experimental evaluation confirms the effectiveness of training-based
    algorithms on real data sets, and also indicates an intrinsic trade-off between
    fairness and efficiency."
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Jon
  full_name: Feldman, Jon
  last_name: Feldman
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Nitish
  full_name: Korula, Nitish
  last_name: Korula
- first_name: Vahab S.
  full_name: Mirrokni, Vahab S.
  last_name: Mirrokni
- first_name: Cliff
  full_name: Stein, Cliff
  last_name: Stein
citation:
  ama: 'Feldman J, Henzinger MH, Korula N, Mirrokni VS, Stein C. Online stochastic
    packing applied to display ad allocation. In: <i>18th Annual European Symposium
    on Algorithms</i>. Vol 6346. Springer Nature; 2010:182–194. doi:<a href="https://doi.org/10.1007/978-3-642-15775-2_16">10.1007/978-3-642-15775-2_16</a>'
  apa: 'Feldman, J., Henzinger, M. H., Korula, N., Mirrokni, V. S., &#38; Stein, C.
    (2010). Online stochastic packing applied to display ad allocation. In <i>18th
    Annual European Symposium on Algorithms</i> (Vol. 6346, pp. 182–194). Liverpool,
    United Kingdom: Springer Nature. <a href="https://doi.org/10.1007/978-3-642-15775-2_16">https://doi.org/10.1007/978-3-642-15775-2_16</a>'
  chicago: Feldman, Jon, Monika H Henzinger, Nitish Korula, Vahab S. Mirrokni, and
    Cliff Stein. “Online Stochastic Packing Applied to Display Ad Allocation.” In
    <i>18th Annual European Symposium on Algorithms</i>, 6346:182–194. Springer Nature,
    2010. <a href="https://doi.org/10.1007/978-3-642-15775-2_16">https://doi.org/10.1007/978-3-642-15775-2_16</a>.
  ieee: J. Feldman, M. H. Henzinger, N. Korula, V. S. Mirrokni, and C. Stein, “Online
    stochastic packing applied to display ad allocation,” in <i>18th Annual European
    Symposium on Algorithms</i>, Liverpool, United Kingdom, 2010, vol. 6346, pp. 182–194.
  ista: 'Feldman J, Henzinger MH, Korula N, Mirrokni VS, Stein C. 2010. Online stochastic
    packing applied to display ad allocation. 18th Annual European Symposium on Algorithms.
    ESA: European Symposium on Algorithms, LNCS, vol. 6346, 182–194.'
  mla: Feldman, Jon, et al. “Online Stochastic Packing Applied to Display Ad Allocation.”
    <i>18th Annual European Symposium on Algorithms</i>, vol. 6346, Springer Nature,
    2010, pp. 182–194, doi:<a href="https://doi.org/10.1007/978-3-642-15775-2_16">10.1007/978-3-642-15775-2_16</a>.
  short: J. Feldman, M.H. Henzinger, N. Korula, V.S. Mirrokni, C. Stein, in:, 18th
    Annual European Symposium on Algorithms, Springer Nature, 2010, pp. 182–194.
conference:
  end_date: 2010-09-08
  location: Liverpool, United Kingdom
  name: 'ESA: European Symposium on Algorithms'
  start_date: 2010-09-06
date_created: 2022-08-11T12:14:20Z
date_published: 2010-09-01T00:00:00Z
date_updated: 2023-02-13T11:36:46Z
day: '01'
doi: 10.1007/978-3-642-15775-2_16
extern: '1'
external_id:
  arxiv:
  - '1001.5076'
intvolume: '      6346'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1001.5076
month: '09'
oa: 1
oa_version: Preprint
page: 182–194
publication: 18th Annual European Symposium on Algorithms
publication_identifier:
  isbn:
  - '3642157742'
  issn:
  - 1611-3349
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Online stochastic packing applied to display ad allocation
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6346
year: '2010'
...
---
_id: '11838'
abstract:
- lang: eng
  text: Two-sided matching markets play a prominent role in economic theory. A prime
    example of such a market is the sponsored search market where $n$ advertisers
    compete for the assignment of one of $k$ sponsored search results, also known
    as ``slots'', for certain keywords they are interested in. Here, as in other markets
    of that kind, market equilibria correspond to stable matchings. In this paper,
    we show how to modify Kuhn's Hungarian Method (Kuhn, 1955) so that it finds an
    optimal stable matching between advertisers and advertising slots in settings
    with generalized linear utilities, per-bidder-item reserve prices, and per-bidder-item
    maximum prices. The only algorithm for this problem presented so far (Aggarwal
    et al., 2009) requires the market to be in ''general position''. We do not make
    this assumption.
alternative_title:
- LIPIcs
article_processing_charge: No
arxiv: 1
author:
- first_name: Paul
  full_name: Dütting, Paul
  last_name: Dütting
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Ingmar
  full_name: Weber, Ingmar
  last_name: Weber
citation:
  ama: 'Dütting P, Henzinger MH, Weber I. Sponsored search, market equilibria, and
    the Hungarian Method. In: <i>27th International Symposium on Theoretical Aspects
    of Computer Science</i>. Vol 5. Schloss Dagstuhl - Leibniz-Zentrum für Informatik;
    2010:287-298. doi:<a href="https://doi.org/10.4230/LIPICS.STACS.2010.2463">10.4230/LIPICS.STACS.2010.2463</a>'
  apa: 'Dütting, P., Henzinger, M. H., &#38; Weber, I. (2010). Sponsored search, market
    equilibria, and the Hungarian Method. In <i>27th International Symposium on Theoretical
    Aspects of Computer Science</i> (Vol. 5, pp. 287–298). Nancy, France: Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPICS.STACS.2010.2463">https://doi.org/10.4230/LIPICS.STACS.2010.2463</a>'
  chicago: Dütting, Paul, Monika H Henzinger, and Ingmar Weber. “Sponsored Search,
    Market Equilibria, and the Hungarian Method.” In <i>27th International Symposium
    on Theoretical Aspects of Computer Science</i>, 5:287–98. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2010. <a href="https://doi.org/10.4230/LIPICS.STACS.2010.2463">https://doi.org/10.4230/LIPICS.STACS.2010.2463</a>.
  ieee: P. Dütting, M. H. Henzinger, and I. Weber, “Sponsored search, market equilibria,
    and the Hungarian Method,” in <i>27th International Symposium on Theoretical Aspects
    of Computer Science</i>, Nancy, France, 2010, vol. 5, pp. 287–298.
  ista: 'Dütting P, Henzinger MH, Weber I. 2010. Sponsored search, market equilibria,
    and the Hungarian Method. 27th International Symposium on Theoretical Aspects
    of Computer Science. STACS: Symposium on Theoretical Aspects of Computer Science,
    LIPIcs, vol. 5, 287–298.'
  mla: Dütting, Paul, et al. “Sponsored Search, Market Equilibria, and the Hungarian
    Method.” <i>27th International Symposium on Theoretical Aspects of Computer Science</i>,
    vol. 5, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 287–98, doi:<a
    href="https://doi.org/10.4230/LIPICS.STACS.2010.2463">10.4230/LIPICS.STACS.2010.2463</a>.
  short: P. Dütting, M.H. Henzinger, I. Weber, in:, 27th International Symposium on
    Theoretical Aspects of Computer Science, Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik, 2010, pp. 287–298.
conference:
  end_date: 2010-03-06
  location: Nancy, France
  name: 'STACS: Symposium on Theoretical Aspects of Computer Science'
  start_date: 2010-03-04
date_created: 2022-08-12T11:45:49Z
date_published: 2010-03-09T00:00:00Z
date_updated: 2023-02-21T16:30:02Z
day: '09'
doi: 10.4230/LIPICS.STACS.2010.2463
extern: '1'
external_id:
  arxiv:
  - '0912.1934'
intvolume: '         5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.4230/LIPIcs.STACS.2010.2463
month: '03'
oa: 1
oa_version: Published Version
page: 287-298
publication: 27th International Symposium on Theoretical Aspects of Computer Science
publication_identifier:
  isbn:
  - 978-3-939897-16-3
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
related_material:
  record:
  - id: '11838'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Sponsored search, market equilibria, and the Hungarian Method
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2010'
...
---
_id: '12654'
abstract:
- lang: eng
  text: 'We investigate the transferability of an enhanced temperature-index melt
    model that was developed and tested on Haut Glacier d’Arolla, Switzerland, in
    the 2001 season. The model’s empirical parameters (temperature factor, TF, and
    shortwave radiation factor, SRF) are recalibrated for: (1) other locations on
    Haut Glacier d’Arolla; (2) subperiods of distinct meteorological conditions; (3)
    different years on Haut Glacier d’Arolla; and (4) other glaciers in different
    years. The model parameters are optimized against simulations of an energy-balance
    model validated against ablation observations. Results are compared with those
    obtained with the original parameters. The model works very well when applied
    to other sites, seasons and glaciers, with the exception of overcast conditions.
    Differences are due to underestimation of high melt rates. The parameter values
    are associated with the prevailing energy-balance conditions, showing that high
    SRF are obtained on clear-sky days, whereas higher TF are typical of locations
    where glacier winds prevail and turbulent fluxes are high. We also provide a range
    of parameters clearly associated with the site’s location and its meteorological
    characteristics that could help to assign parameter values to sites where few
    data are available.'
article_processing_charge: No
article_type: original
author:
- first_name: Marco
  full_name: Carenzo, Marco
  last_name: Carenzo
- first_name: Francesca
  full_name: Pellicciotti, Francesca
  id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
  last_name: Pellicciotti
- first_name: Stefan
  full_name: Rimkus, Stefan
  last_name: Rimkus
- first_name: Paolo
  full_name: Burlando, Paolo
  last_name: Burlando
citation:
  ama: Carenzo M, Pellicciotti F, Rimkus S, Burlando P. Assessing the transferability
    and robustness of an enhanced temperature-index glacier-melt model. <i>Journal
    of Glaciology</i>. 2009;55(190):258-274. doi:<a href="https://doi.org/10.3189/002214309788608804">10.3189/002214309788608804</a>
  apa: Carenzo, M., Pellicciotti, F., Rimkus, S., &#38; Burlando, P. (2009). Assessing
    the transferability and robustness of an enhanced temperature-index glacier-melt
    model. <i>Journal of Glaciology</i>. Cambridge University Press. <a href="https://doi.org/10.3189/002214309788608804">https://doi.org/10.3189/002214309788608804</a>
  chicago: Carenzo, Marco, Francesca Pellicciotti, Stefan Rimkus, and Paolo Burlando.
    “Assessing the Transferability and Robustness of an Enhanced Temperature-Index
    Glacier-Melt Model.” <i>Journal of Glaciology</i>. Cambridge University Press,
    2009. <a href="https://doi.org/10.3189/002214309788608804">https://doi.org/10.3189/002214309788608804</a>.
  ieee: M. Carenzo, F. Pellicciotti, S. Rimkus, and P. Burlando, “Assessing the transferability
    and robustness of an enhanced temperature-index glacier-melt model,” <i>Journal
    of Glaciology</i>, vol. 55, no. 190. Cambridge University Press, pp. 258–274,
    2009.
  ista: Carenzo M, Pellicciotti F, Rimkus S, Burlando P. 2009. Assessing the transferability
    and robustness of an enhanced temperature-index glacier-melt model. Journal of
    Glaciology. 55(190), 258–274.
  mla: Carenzo, Marco, et al. “Assessing the Transferability and Robustness of an
    Enhanced Temperature-Index Glacier-Melt Model.” <i>Journal of Glaciology</i>,
    vol. 55, no. 190, Cambridge University Press, 2009, pp. 258–74, doi:<a href="https://doi.org/10.3189/002214309788608804">10.3189/002214309788608804</a>.
  short: M. Carenzo, F. Pellicciotti, S. Rimkus, P. Burlando, Journal of Glaciology
    55 (2009) 258–274.
date_created: 2023-02-20T08:18:34Z
date_published: 2009-03-01T00:00:00Z
date_updated: 2023-02-20T09:06:27Z
day: '01'
doi: 10.3189/002214309788608804
extern: '1'
intvolume: '        55'
issue: '190'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.3189/002214309788608804
month: '03'
oa: 1
oa_version: Published Version
page: 258-274
publication: Journal of Glaciology
publication_identifier:
  eissn:
  - 1727-5652
  issn:
  - 0022-1430
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Assessing the transferability and robustness of an enhanced temperature-index
  glacier-melt model
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 55
year: '2009'
...
---
_id: '12655'
abstract:
- lang: eng
  text: We discuss the inclusion of the subsurface heat-conduction flux into the calculation
    of the energy balance and ablation at the glacier–atmosphere interface. Data from
    automatic weather stations are used to force an energy-balance model at several
    locations on alpine glaciers and at one site in the dry Andes of central Chile.
    The heat-conduction flux is computed using a two-layer scheme, assuming that 36%
    of the net shortwave radiation is absorbed by the surface layer and that the rest
    penetrates into the snowpack. We compare simulations conducted with and without
    subsurface heat flux. Results show that assuming a surface temperature of zero
    degrees leads to a larger overestimation of melt at the sites in the accumulation
    area (10.4–13.3%) than in the ablation area (0.5–2.8%), due to lower air temperatures
    and the presence of snow. The difference between simulations with and without
    heat conduction is also high at the beginning and end of the ablation season (up
    to 29% for the first 15 days of the season), when air temperatures are lower and
    snow covers the glacier surface, while they are of little importance during periods
    of sustained melt at all the locations investigated.
article_processing_charge: No
article_type: original
author:
- first_name: Francesca
  full_name: Pellicciotti, Francesca
  id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
  last_name: Pellicciotti
- first_name: Marco
  full_name: Carenzo, Marco
  last_name: Carenzo
- first_name: Jakob
  full_name: Helbing, Jakob
  last_name: Helbing
- first_name: Stefan
  full_name: Rimkus, Stefan
  last_name: Rimkus
- first_name: Paolo
  full_name: Burlando, Paolo
  last_name: Burlando
citation:
  ama: Pellicciotti F, Carenzo M, Helbing J, Rimkus S, Burlando P. On the role of
    subsurface heat conduction in glacier energy-balance modelling. <i>Annals of Glaciology</i>.
    2009;50(50):16-24. doi:<a href="https://doi.org/10.3189/172756409787769555">10.3189/172756409787769555</a>
  apa: Pellicciotti, F., Carenzo, M., Helbing, J., Rimkus, S., &#38; Burlando, P.
    (2009). On the role of subsurface heat conduction in glacier energy-balance modelling.
    <i>Annals of Glaciology</i>. International Glaciological Society. <a href="https://doi.org/10.3189/172756409787769555">https://doi.org/10.3189/172756409787769555</a>
  chicago: Pellicciotti, Francesca, Marco Carenzo, Jakob Helbing, Stefan Rimkus, and
    Paolo Burlando. “On the Role of Subsurface Heat Conduction in Glacier Energy-Balance
    Modelling.” <i>Annals of Glaciology</i>. International Glaciological Society,
    2009. <a href="https://doi.org/10.3189/172756409787769555">https://doi.org/10.3189/172756409787769555</a>.
  ieee: F. Pellicciotti, M. Carenzo, J. Helbing, S. Rimkus, and P. Burlando, “On the
    role of subsurface heat conduction in glacier energy-balance modelling,” <i>Annals
    of Glaciology</i>, vol. 50, no. 50. International Glaciological Society, pp. 16–24,
    2009.
  ista: Pellicciotti F, Carenzo M, Helbing J, Rimkus S, Burlando P. 2009. On the role
    of subsurface heat conduction in glacier energy-balance modelling. Annals of Glaciology.
    50(50), 16–24.
  mla: Pellicciotti, Francesca, et al. “On the Role of Subsurface Heat Conduction
    in Glacier Energy-Balance Modelling.” <i>Annals of Glaciology</i>, vol. 50, no.
    50, International Glaciological Society, 2009, pp. 16–24, doi:<a href="https://doi.org/10.3189/172756409787769555">10.3189/172756409787769555</a>.
  short: F. Pellicciotti, M. Carenzo, J. Helbing, S. Rimkus, P. Burlando, Annals of
    Glaciology 50 (2009) 16–24.
date_created: 2023-02-20T08:18:40Z
date_published: 2009-01-01T00:00:00Z
date_updated: 2023-02-20T09:00:53Z
day: '01'
doi: 10.3189/172756409787769555
extern: '1'
intvolume: '        50'
issue: '50'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.3189/172756409787769555
month: '01'
oa: 1
oa_version: Published Version
page: 16-24
publication: Annals of Glaciology
publication_identifier:
  eissn:
  - 1727-5644
  issn:
  - 0260-3055
publication_status: published
publisher: International Glaciological Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the role of subsurface heat conduction in glacier energy-balance modelling
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 50
year: '2009'
...
---
_id: '88'
abstract:
- lang: eng
  text: 'We have developed a tunable source of Mie scale microdroplet aerosols that
    can be used for the generation of energetic ions. To demonstrate this potential,
    a terawatt Ti: Al2 O3 laser focused to 2×10 19 W/cm2 was used to irradiate heavy
    water (D2 O) aerosols composed of micron-scale droplets. Energetic deuterium ions,
    which were generated in the laser-droplet interaction, produced deuterium-deuterium
    fusion with approximately 2×10^3 fusion neutrons measured per joule of incident
    laser energy. '
acknowledgement: This work was supported by the National Science Foundation under
  Grant Nos. PHY-0456898, PHY-0757989, and PHY-0456870 and the National Nuclear Security
  Administration under Cooperative Agreement No. DE-FC52-03NA00156. Acknowledgment
  is made to the Donors of the Petroleum Research Fund administered by the American
  Chemical Society for partial support of this research.
article_number: '063503'
author:
- first_name: Andrew P
  full_name: Higginbotham, Andrew P
  id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
  last_name: Higginbotham
  orcid: 0000-0003-2607-2363
- first_name: Octavi
  full_name: Semonin, Octavi
  last_name: Semonin
- first_name: S
  full_name: Bruce, S
  last_name: Bruce
- first_name: C
  full_name: Chan, C
  last_name: Chan
- first_name: M
  full_name: Maindi, M
  last_name: Maindi
- first_name: Tom
  full_name: Donnelly, Tom
  last_name: Donnelly
- first_name: M
  full_name: Maurer, M
  last_name: Maurer
- first_name: Woosuk
  full_name: Bang, Woosuk
  last_name: Bang
- first_name: I.V
  full_name: Churina, I.V
  last_name: Churina
- first_name: Jens
  full_name: Osterholz, Jens
  last_name: Osterholz
- first_name: I
  full_name: Kim, I
  last_name: Kim
- first_name: Aaron
  full_name: Bernstein, Aaron
  last_name: Bernstein
- first_name: Todd
  full_name: Ditmire, Todd
  last_name: Ditmire
citation:
  ama: Higginbotham AP, Semonin O, Bruce S, et al. Generation of Mie size microdroplet
    aerosols with applications in laser-driven fusion experiments. <i>Review of Scientific
    Instruments</i>. 2009;80(6). doi:<a href="https://doi.org/10.1063/1.3155302">10.1063/1.3155302</a>
  apa: Higginbotham, A. P., Semonin, O., Bruce, S., Chan, C., Maindi, M., Donnelly,
    T., … Ditmire, T. (2009). Generation of Mie size microdroplet aerosols with applications
    in laser-driven fusion experiments. <i>Review of Scientific Instruments</i>. American
    Institute of Physics. <a href="https://doi.org/10.1063/1.3155302">https://doi.org/10.1063/1.3155302</a>
  chicago: Higginbotham, Andrew P, Octavi Semonin, S Bruce, C Chan, M Maindi, Tom
    Donnelly, M Maurer, et al. “Generation of Mie Size Microdroplet Aerosols with
    Applications in Laser-Driven Fusion Experiments.” <i>Review of Scientific Instruments</i>.
    American Institute of Physics, 2009. <a href="https://doi.org/10.1063/1.3155302">https://doi.org/10.1063/1.3155302</a>.
  ieee: A. P. Higginbotham <i>et al.</i>, “Generation of Mie size microdroplet aerosols
    with applications in laser-driven fusion experiments,” <i>Review of Scientific
    Instruments</i>, vol. 80, no. 6. American Institute of Physics, 2009.
  ista: Higginbotham AP, Semonin O, Bruce S, Chan C, Maindi M, Donnelly T, Maurer
    M, Bang W, Churina I., Osterholz J, Kim I, Bernstein A, Ditmire T. 2009. Generation
    of Mie size microdroplet aerosols with applications in laser-driven fusion experiments.
    Review of Scientific Instruments. 80(6), 063503.
  mla: Higginbotham, Andrew P., et al. “Generation of Mie Size Microdroplet Aerosols
    with Applications in Laser-Driven Fusion Experiments.” <i>Review of Scientific
    Instruments</i>, vol. 80, no. 6, 063503, American Institute of Physics, 2009,
    doi:<a href="https://doi.org/10.1063/1.3155302">10.1063/1.3155302</a>.
  short: A.P. Higginbotham, O. Semonin, S. Bruce, C. Chan, M. Maindi, T. Donnelly,
    M. Maurer, W. Bang, I.. Churina, J. Osterholz, I. Kim, A. Bernstein, T. Ditmire,
    Review of Scientific Instruments 80 (2009).
date_created: 2018-12-11T11:44:34Z
date_published: 2009-06-25T00:00:00Z
date_updated: 2021-01-12T08:21:06Z
day: '25'
doi: 10.1063/1.3155302
extern: '1'
external_id:
  pmid:
  - '    19566203'
intvolume: '        80'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.osti.gov/biblio/22053583
month: '06'
oa: 1
oa_version: Submitted Version
pmid: 1
publication: Review of Scientific Instruments
publication_status: published
publisher: American Institute of Physics
publist_id: '7966'
quality_controlled: '1'
status: public
title: Generation of Mie size microdroplet aerosols with applications in laser-driven
  fusion experiments
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 80
year: '2009'
...
---
_id: '9147'
abstract:
- lang: eng
  text: As part of an ongoing effort to develop a parameterization of wave-induced
    abyssal mixing, the authors derive an heuristic model for nonlinear wave breaking
    and energy dissipation associated with internal tides. Then the saturation and
    dissipation of internal tides for idealized and observed topography samples are
    investigated. One of the main results is that the wave-induced mixing could be
    more intense and more confined to the bottom than previously assumed in numerical
    models. Furthermore, in this model wave breaking and mixing clearly depend on
    the small scales of the topography below 10 km or so, which is below the current
    resolution of global bathymetry. This motivates the use of a statistical approach
    to represent the unresolved topography when addressing the role of internal tides
    in mixing the deep ocean.
article_processing_charge: No
article_type: original
author:
- first_name: Caroline J
  full_name: Muller, Caroline J
  id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
  last_name: Muller
  orcid: 0000-0001-5836-5350
- first_name: Oliver
  full_name: Bühler, Oliver
  last_name: Bühler
citation:
  ama: Muller CJ, Bühler O. Saturation of the internal tides and induced mixing in
    the abyssal ocean. <i>Journal of Physical Oceanography</i>. 2009;39(9):2077-2096.
    doi:<a href="https://doi.org/10.1175/2009jpo4141.1">10.1175/2009jpo4141.1</a>
  apa: Muller, C. J., &#38; Bühler, O. (2009). Saturation of the internal tides and
    induced mixing in the abyssal ocean. <i>Journal of Physical Oceanography</i>.
    American Meteorological Society. <a href="https://doi.org/10.1175/2009jpo4141.1">https://doi.org/10.1175/2009jpo4141.1</a>
  chicago: Muller, Caroline J, and Oliver Bühler. “Saturation of the Internal Tides
    and Induced Mixing in the Abyssal Ocean.” <i>Journal of Physical Oceanography</i>.
    American Meteorological Society, 2009. <a href="https://doi.org/10.1175/2009jpo4141.1">https://doi.org/10.1175/2009jpo4141.1</a>.
  ieee: C. J. Muller and O. Bühler, “Saturation of the internal tides and induced
    mixing in the abyssal ocean,” <i>Journal of Physical Oceanography</i>, vol. 39,
    no. 9. American Meteorological Society, pp. 2077–2096, 2009.
  ista: Muller CJ, Bühler O. 2009. Saturation of the internal tides and induced mixing
    in the abyssal ocean. Journal of Physical Oceanography. 39(9), 2077–2096.
  mla: Muller, Caroline J., and Oliver Bühler. “Saturation of the Internal Tides and
    Induced Mixing in the Abyssal Ocean.” <i>Journal of Physical Oceanography</i>,
    vol. 39, no. 9, American Meteorological Society, 2009, pp. 2077–96, doi:<a href="https://doi.org/10.1175/2009jpo4141.1">10.1175/2009jpo4141.1</a>.
  short: C.J. Muller, O. Bühler, Journal of Physical Oceanography 39 (2009) 2077–2096.
date_created: 2021-02-15T14:41:08Z
date_published: 2009-09-01T00:00:00Z
date_updated: 2022-01-24T13:50:37Z
day: '01'
doi: 10.1175/2009jpo4141.1
extern: '1'
intvolume: '        39'
issue: '9'
keyword:
- Oceanography
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1175/2009JPO4141.1
month: '09'
oa: 1
oa_version: Published Version
page: 2077-2096
publication: Journal of Physical Oceanography
publication_identifier:
  issn:
  - 1520-0485
  - 0022-3670
publication_status: published
publisher: American Meteorological Society
quality_controlled: '1'
status: public
title: Saturation of the internal tides and induced mixing in the abyssal ocean
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 39
year: '2009'
...
---
_id: '9148'
abstract:
- lang: eng
  text: Several observational studies have shown a tight relationship between tropical
    precipitation and column‐integrated water vapor. We show that the observed relationship
    in the tropics between column‐integrated water vapor, precipitation, and its variance
    can be qualitatively reproduced by a simple and physically motivated two‐layer
    model. It has previously been argued that features of this relationship could
    be explained by analogy with the theory of continuous phase transitions. Instead,
    our model explicitly assumes that the onset of precipitation is governed by a
    stability threshold involving boundary‐layer water vapor. This allows us to explain
    the precipitation‐humidity relationship over a broader range of water vapor values,
    and may explain the observed temperature dependence of the relationship.
article_number: L16804
article_processing_charge: No
article_type: original
author:
- first_name: Caroline J
  full_name: Muller, Caroline J
  id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
  last_name: Muller
  orcid: 0000-0001-5836-5350
- first_name: Larissa E.
  full_name: Back, Larissa E.
  last_name: Back
- first_name: Paul A.
  full_name: O'Gorman, Paul A.
  last_name: O'Gorman
- first_name: Kerry A.
  full_name: Emanuel, Kerry A.
  last_name: Emanuel
citation:
  ama: Muller CJ, Back LE, O’Gorman PA, Emanuel KA. A model for the relationship between
    tropical precipitation and column water vapor. <i>Geophysical Research Letters</i>.
    2009;36(16). doi:<a href="https://doi.org/10.1029/2009gl039667">10.1029/2009gl039667</a>
  apa: Muller, C. J., Back, L. E., O’Gorman, P. A., &#38; Emanuel, K. A. (2009). A
    model for the relationship between tropical precipitation and column water vapor.
    <i>Geophysical Research Letters</i>. American Geophysical Union. <a href="https://doi.org/10.1029/2009gl039667">https://doi.org/10.1029/2009gl039667</a>
  chicago: Muller, Caroline J, Larissa E. Back, Paul A. O’Gorman, and Kerry A. Emanuel.
    “A Model for the Relationship between Tropical Precipitation and Column Water
    Vapor.” <i>Geophysical Research Letters</i>. American Geophysical Union, 2009.
    <a href="https://doi.org/10.1029/2009gl039667">https://doi.org/10.1029/2009gl039667</a>.
  ieee: C. J. Muller, L. E. Back, P. A. O’Gorman, and K. A. Emanuel, “A model for
    the relationship between tropical precipitation and column water vapor,” <i>Geophysical
    Research Letters</i>, vol. 36, no. 16. American Geophysical Union, 2009.
  ista: Muller CJ, Back LE, O’Gorman PA, Emanuel KA. 2009. A model for the relationship
    between tropical precipitation and column water vapor. Geophysical Research Letters.
    36(16), L16804.
  mla: Muller, Caroline J., et al. “A Model for the Relationship between Tropical
    Precipitation and Column Water Vapor.” <i>Geophysical Research Letters</i>, vol.
    36, no. 16, L16804, American Geophysical Union, 2009, doi:<a href="https://doi.org/10.1029/2009gl039667">10.1029/2009gl039667</a>.
  short: C.J. Muller, L.E. Back, P.A. O’Gorman, K.A. Emanuel, Geophysical Research
    Letters 36 (2009).
date_created: 2021-02-15T14:41:28Z
date_published: 2009-08-25T00:00:00Z
date_updated: 2022-01-24T13:50:15Z
day: '25'
doi: 10.1029/2009gl039667
extern: '1'
intvolume: '        36'
issue: '16'
keyword:
- General Earth and Planetary Sciences
- Geophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1029/2009GL039667
month: '08'
oa: 1
oa_version: Published Version
publication: Geophysical Research Letters
publication_identifier:
  issn:
  - 0094-8276
publication_status: published
publisher: American Geophysical Union
quality_controlled: '1'
status: public
title: A model for the relationship between tropical precipitation and column water
  vapor
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 36
year: '2009'
...
---
_id: '8026'
abstract:
- lang: eng
  text: Recent theoretical work has provided a basic understanding of signal propagation
    in networks of spiking neurons, but mechanisms for gating and controlling these
    signals have not been investigated previously. Here we introduce an idea for the
    gating of multiple signals in cortical networks that combines principles of signal
    propagation with aspects of balanced networks. Specifically, we studied networks
    in which incoming excitatory signals are normally cancelled by locally evoked
    inhibition, leaving the targeted layer unresponsive. Transmission can be gated
    'on' by modulating excitatory and inhibitory gains to upset this detailed balance.
    We illustrate gating through detailed balance in large networks of integrate-and-fire
    neurons. We show successful gating of multiple signals and study failure modes
    that produce effects reminiscent of clinically observed pathologies. Provided
    that the individual signals are detectable, detailed balance has a large capacity
    for gating multiple signals.
article_processing_charge: No
article_type: original
author:
- first_name: Tim P
  full_name: Vogels, Tim P
  id: CB6FF8D2-008F-11EA-8E08-2637E6697425
  last_name: Vogels
  orcid: 0000-0003-3295-6181
- first_name: L F
  full_name: Abbott, L F
  last_name: Abbott
citation:
  ama: Vogels TP, Abbott LF. Gating multiple signals through detailed balance of excitation
    and inhibition in spiking networks. <i>Nature Neuroscience</i>. 2009;12(4):483-491.
    doi:<a href="https://doi.org/10.1038/nn.2276">10.1038/nn.2276</a>
  apa: Vogels, T. P., &#38; Abbott, L. F. (2009). Gating multiple signals through
    detailed balance of excitation and inhibition in spiking networks. <i>Nature Neuroscience</i>.
    Springer Nature. <a href="https://doi.org/10.1038/nn.2276">https://doi.org/10.1038/nn.2276</a>
  chicago: Vogels, Tim P, and L F Abbott. “Gating Multiple Signals through Detailed
    Balance of Excitation and Inhibition in Spiking Networks.” <i>Nature Neuroscience</i>.
    Springer Nature, 2009. <a href="https://doi.org/10.1038/nn.2276">https://doi.org/10.1038/nn.2276</a>.
  ieee: T. P. Vogels and L. F. Abbott, “Gating multiple signals through detailed balance
    of excitation and inhibition in spiking networks,” <i>Nature Neuroscience</i>,
    vol. 12, no. 4. Springer Nature, pp. 483–491, 2009.
  ista: Vogels TP, Abbott LF. 2009. Gating multiple signals through detailed balance
    of excitation and inhibition in spiking networks. Nature Neuroscience. 12(4),
    483–491.
  mla: Vogels, Tim P., and L. F. Abbott. “Gating Multiple Signals through Detailed
    Balance of Excitation and Inhibition in Spiking Networks.” <i>Nature Neuroscience</i>,
    vol. 12, no. 4, Springer Nature, 2009, pp. 483–91, doi:<a href="https://doi.org/10.1038/nn.2276">10.1038/nn.2276</a>.
  short: T.P. Vogels, L.F. Abbott, Nature Neuroscience 12 (2009) 483–491.
date_created: 2020-06-25T13:10:55Z
date_published: 2009-04-01T00:00:00Z
date_updated: 2021-01-12T08:16:36Z
day: '01'
doi: 10.1038/nn.2276
extern: '1'
external_id:
  pmid:
  - '19305402'
intvolume: '        12'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2693069/
month: '04'
oa: 1
oa_version: Submitted Version
page: 483-491
pmid: 1
publication: Nature Neuroscience
publication_identifier:
  issn:
  - 1097-6256
  - 1546-1726
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Gating multiple signals through detailed balance of excitation and inhibition
  in spiking networks
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 12
year: '2009'
...
