---
_id: '2298'
abstract:
- lang: eng
text: "We present a shape analysis for programs that manipulate overlaid data structures
which share sets of objects. The abstract domain contains Separation Logic formulas
that (1) combine a per-object separating conjunction with a per-field separating
conjunction and (2) constrain a set of variables interpreted as sets of objects.
The definition of the abstract domain operators is based on a notion of homomorphism
between formulas, viewed as graphs, used recently to define optimal decision procedures
for fragments of the Separation Logic. Based on a Frame Rule that supports the
two versions of the separating conjunction, the analysis is able to reason in
a modular manner about non-overlaid data structures and then, compose information
only at a few program points, e.g., procedure returns. We have implemented this
analysis in a prototype tool and applied it on several interesting case studies
that manipulate overlaid and nested linked lists.\r\n"
alternative_title:
- LNCS
author:
- first_name: Cezara
full_name: Dragoi, Cezara
id: 2B2B5ED0-F248-11E8-B48F-1D18A9856A87
last_name: Dragoi
- first_name: Constantin
full_name: Enea, Constantin
last_name: Enea
- first_name: Mihaela
full_name: Sighireanu, Mihaela
last_name: Sighireanu
citation:
ama: 'Dragoi C, Enea C, Sighireanu M. Local shape analysis for overlaid data structures.
In: Vol 7935. Springer; 2013:150-171. doi:10.1007/978-3-642-38856-9_10'
apa: 'Dragoi, C., Enea, C., & Sighireanu, M. (2013). Local shape analysis for
overlaid data structures (Vol. 7935, pp. 150–171). Presented at the SAS: Static
Analysis Symposium, Seattle, WA, United States: Springer. https://doi.org/10.1007/978-3-642-38856-9_10'
chicago: Dragoi, Cezara, Constantin Enea, and Mihaela Sighireanu. “Local Shape Analysis
for Overlaid Data Structures,” 7935:150–71. Springer, 2013. https://doi.org/10.1007/978-3-642-38856-9_10.
ieee: 'C. Dragoi, C. Enea, and M. Sighireanu, “Local shape analysis for overlaid
data structures,” presented at the SAS: Static Analysis Symposium, Seattle, WA,
United States, 2013, vol. 7935, pp. 150–171.'
ista: 'Dragoi C, Enea C, Sighireanu M. 2013. Local shape analysis for overlaid data
structures. SAS: Static Analysis Symposium, LNCS, vol. 7935, 150–171.'
mla: Dragoi, Cezara, et al. Local Shape Analysis for Overlaid Data Structures.
Vol. 7935, Springer, 2013, pp. 150–71, doi:10.1007/978-3-642-38856-9_10.
short: C. Dragoi, C. Enea, M. Sighireanu, in:, Springer, 2013, pp. 150–171.
conference:
end_date: 2013-06-22
location: Seattle, WA, United States
name: 'SAS: Static Analysis Symposium'
start_date: 2013-06-20
date_created: 2018-12-11T11:56:50Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2021-01-12T06:56:36Z
day: '01'
ddc:
- '000'
- '004'
department:
- _id: ToHe
doi: 10.1007/978-3-642-38856-9_10
ec_funded: 1
file:
- access_level: open_access
checksum: 907edd33a5892e3af093365f1fd57ed7
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:10:36Z
date_updated: 2020-07-14T12:45:37Z
file_id: '4824'
file_name: IST-2014-196-v1+1_sas13.pdf
file_size: 299004
relation: main_file
file_date_updated: 2020-07-14T12:45:37Z
has_accepted_license: '1'
intvolume: ' 7935'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Submitted Version
page: 150 - 171
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '267989'
name: Quantitative Reactive Modeling
publication_status: published
publisher: Springer
publist_id: '4630'
pubrep_id: '196'
quality_controlled: '1'
scopus_import: 1
status: public
title: Local shape analysis for overlaid data structures
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7935
year: '2013'
...
---
_id: '2299'
abstract:
- lang: eng
text: 'The standard hardware design flow involves: (a) design of an integrated circuit
using a hardware description language, (b) extensive functional and formal verification,
and (c) logical synthesis. However, the above-mentioned processes consume significant
effort and time. An alternative approach is to use a formal specification language
as a high-level hardware description language and synthesize hardware from formal
specifications. Our work is a case study of the synthesis of the widely and industrially
used AMBA AHB protocol from formal specifications. Bloem et al. presented the
first formal specifications for the AMBA AHB Arbiter and synthesized the AHB Arbiter
circuit. However, in the first formal specification some important assumptions
were missing. Our contributions are as follows: (a) We present detailed formal
specifications for the AHB Arbiter incorporating the missing details, and obtain
significant improvements in the synthesis results (both with respect to the number
of gates in the synthesized circuit and with respect to the time taken to synthesize
the circuit), and (b) we present formal specifications to generate compact circuits
for the remaining two main components of AMBA AHB, namely, AHB Master and AHB
Slave. Thus with systematic description we are able to automatically and completely
synthesize an important and widely used industrial protocol.'
author:
- first_name: Yashdeep
full_name: Godhal, Yashdeep
id: 5B547124-EB61-11E9-8887-89D9C04DBDF5
last_name: Godhal
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
citation:
ama: 'Godhal Y, Chatterjee K, Henzinger TA. Synthesis of AMBA AHB from formal specification:
A case study. International Journal on Software Tools for Technology Transfer.
2013;15(5-6):585-601. doi:10.1007/s10009-011-0207-9'
apa: 'Godhal, Y., Chatterjee, K., & Henzinger, T. A. (2013). Synthesis of AMBA
AHB from formal specification: A case study. International Journal on Software
Tools for Technology Transfer. Springer. https://doi.org/10.1007/s10009-011-0207-9'
chicago: 'Godhal, Yashdeep, Krishnendu Chatterjee, and Thomas A Henzinger. “Synthesis
of AMBA AHB from Formal Specification: A Case Study.” International Journal
on Software Tools for Technology Transfer. Springer, 2013. https://doi.org/10.1007/s10009-011-0207-9.'
ieee: 'Y. Godhal, K. Chatterjee, and T. A. Henzinger, “Synthesis of AMBA AHB from
formal specification: A case study,” International Journal on Software Tools
for Technology Transfer, vol. 15, no. 5–6. Springer, pp. 585–601, 2013.'
ista: 'Godhal Y, Chatterjee K, Henzinger TA. 2013. Synthesis of AMBA AHB from formal
specification: A case study. International Journal on Software Tools for Technology
Transfer. 15(5–6), 585–601.'
mla: 'Godhal, Yashdeep, et al. “Synthesis of AMBA AHB from Formal Specification:
A Case Study.” International Journal on Software Tools for Technology Transfer,
vol. 15, no. 5–6, Springer, 2013, pp. 585–601, doi:10.1007/s10009-011-0207-9.'
short: Y. Godhal, K. Chatterjee, T.A. Henzinger, International Journal on Software
Tools for Technology Transfer 15 (2013) 585–601.
date_created: 2018-12-11T11:56:51Z
date_published: 2013-10-01T00:00:00Z
date_updated: 2021-01-12T06:56:37Z
day: '01'
ddc:
- '000'
department:
- _id: KrCh
- _id: ToHe
doi: 10.1007/s10009-011-0207-9
file:
- access_level: open_access
checksum: 57b06a732dd8d6349190dba6b5b0d33b
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:11:53Z
date_updated: 2020-07-14T12:45:37Z
file_id: '4910'
file_name: IST-2012-87-v1+1_Synthesis_of_AMBA_AHB_from_formal_specifications-_A_case_study.pdf
file_size: 277372
relation: main_file
file_date_updated: 2020-07-14T12:45:37Z
has_accepted_license: '1'
intvolume: ' 15'
issue: 5-6
language:
- iso: eng
month: '10'
oa: 1
oa_version: Submitted Version
page: 585 - 601
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
- _id: 2587B514-B435-11E9-9278-68D0E5697425
name: Microsoft Research Faculty Fellowship
publication: International Journal on Software Tools for Technology Transfer
publication_status: published
publisher: Springer
publist_id: '4629'
pubrep_id: '87'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Synthesis of AMBA AHB from formal specification: A case study'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2013'
...
---
_id: '2300'
abstract:
- lang: eng
text: We consider Ising models in two and three dimensions with nearest neighbor
ferromagnetic interactions and long-range, power law decaying, antiferromagnetic
interactions. If the strength of the ferromagnetic coupling J is larger than a
critical value Jc, then the ground state is homogeneous and ferromagnetic. As
the critical value is approached from smaller values of J, it is believed that
the ground state consists of a periodic array of stripes (d=2) or slabs (d=3),
all of the same size and alternating magnetization. Here we prove rigorously that
the ground state energy per site converges to that of the optimal periodic striped
or slabbed state, in the limit that J tends to the ferromagnetic transition point.
While this theorem does not prove rigorously that the ground state is precisely
striped or slabbed, it does prove that in any suitably large box the ground state
is striped or slabbed with high probability.
article_number: '064401'
arxiv: 1
author:
- first_name: Alessandro
full_name: Giuliani, Alessandro
last_name: Giuliani
- first_name: Élliott
full_name: Lieb, Élliott
last_name: Lieb
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Giuliani A, Lieb É, Seiringer R. Realization of stripes and slabs in two and
three dimensions. Physical Review B. 2013;88(6). doi:10.1103/PhysRevB.88.064401
apa: Giuliani, A., Lieb, É., & Seiringer, R. (2013). Realization of stripes
and slabs in two and three dimensions. Physical Review B. American Physical
Society. https://doi.org/10.1103/PhysRevB.88.064401
chicago: Giuliani, Alessandro, Élliott Lieb, and Robert Seiringer. “Realization
of Stripes and Slabs in Two and Three Dimensions.” Physical Review B. American
Physical Society, 2013. https://doi.org/10.1103/PhysRevB.88.064401.
ieee: A. Giuliani, É. Lieb, and R. Seiringer, “Realization of stripes and slabs
in two and three dimensions,” Physical Review B, vol. 88, no. 6. American
Physical Society, 2013.
ista: Giuliani A, Lieb É, Seiringer R. 2013. Realization of stripes and slabs in
two and three dimensions. Physical Review B. 88(6), 064401.
mla: Giuliani, Alessandro, et al. “Realization of Stripes and Slabs in Two and Three
Dimensions.” Physical Review B, vol. 88, no. 6, 064401, American Physical
Society, 2013, doi:10.1103/PhysRevB.88.064401.
short: A. Giuliani, É. Lieb, R. Seiringer, Physical Review B 88 (2013).
date_created: 2018-12-11T11:56:51Z
date_published: 2013-08-01T00:00:00Z
date_updated: 2021-01-12T06:56:38Z
day: '01'
department:
- _id: RoSe
doi: 10.1103/PhysRevB.88.064401
external_id:
arxiv:
- '1305.5323'
intvolume: ' 88'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1305.5323
month: '08'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_status: published
publisher: American Physical Society
publist_id: '4627'
quality_controlled: '1'
scopus_import: 1
status: public
title: Realization of stripes and slabs in two and three dimensions
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 88
year: '2013'
...
---
_id: '2305'
abstract:
- lang: eng
text: We study the complexity of central controller synthesis problems for finite-state
Markov decision processes, where the objective is to optimize both the expected
mean-payoff performance of the system and its stability. e argue that the basic
theoretical notion of expressing the stability in terms of the variance of the
mean-payoff (called global variance in our paper) is not always sufficient, since
it ignores possible instabilities on respective runs. For this reason we propose
alernative definitions of stability, which we call local and hybrid variance,
and which express how rewards on each run deviate from the run's own mean-payoff
and from the expected mean-payoff, respectively. We show that a strategy ensuring
both the expected mean-payoff and the variance below given bounds requires randomization
and memory, under all the above semantics of variance. We then look at the problem
of determining whether there is a such a strategy. For the global variance, we
show that the problem is in PSPACE, and that the answer can be approximated in
pseudo-polynomial time. For the hybrid variance, the analogous decision problem
is in NP, and a polynomial-time approximating algorithm also exists. For local
variance, we show that the decision problem is in NP. Since the overall performance
can be traded for stability (and vice versa), we also present algorithms for approximating
the associated Pareto curve in all the three cases. Finally, we study a special
case of the decision problems, where we require a given expected mean-payoff together
with zero variance. Here we show that the problems can be all solved in polynomial
time.
arxiv: 1
author:
- first_name: Tomáš
full_name: Brázdil, Tomáš
last_name: Brázdil
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Vojtěch
full_name: Forejt, Vojtěch
last_name: Forejt
- first_name: Antonín
full_name: Kučera, Antonín
last_name: Kučera
citation:
ama: 'Brázdil T, Chatterjee K, Forejt V, Kučera A. Trading performance for stability
in Markov decision processes. In: 28th Annual ACM/IEEE Symposium. IEEE;
2013:331-340. doi:10.1109/LICS.2013.39'
apa: 'Brázdil, T., Chatterjee, K., Forejt, V., & Kučera, A. (2013). Trading
performance for stability in Markov decision processes. In 28th Annual ACM/IEEE
Symposium (pp. 331–340). New Orleans, LA, United States: IEEE. https://doi.org/10.1109/LICS.2013.39'
chicago: Brázdil, Tomáš, Krishnendu Chatterjee, Vojtěch Forejt, and Antonín Kučera.
“Trading Performance for Stability in Markov Decision Processes.” In 28th Annual
ACM/IEEE Symposium, 331–40. IEEE, 2013. https://doi.org/10.1109/LICS.2013.39.
ieee: T. Brázdil, K. Chatterjee, V. Forejt, and A. Kučera, “Trading performance
for stability in Markov decision processes,” in 28th Annual ACM/IEEE Symposium,
New Orleans, LA, United States, 2013, pp. 331–340.
ista: 'Brázdil T, Chatterjee K, Forejt V, Kučera A. 2013. Trading performance for
stability in Markov decision processes. 28th Annual ACM/IEEE Symposium. LICS:
Logic in Computer Science, 331–340.'
mla: Brázdil, Tomáš, et al. “Trading Performance for Stability in Markov Decision
Processes.” 28th Annual ACM/IEEE Symposium, IEEE, 2013, pp. 331–40, doi:10.1109/LICS.2013.39.
short: T. Brázdil, K. Chatterjee, V. Forejt, A. Kučera, in:, 28th Annual ACM/IEEE
Symposium, IEEE, 2013, pp. 331–340.
conference:
end_date: 2013-06-28
location: New Orleans, LA, United States
name: 'LICS: Logic in Computer Science'
start_date: 2013-06-25
date_created: 2018-12-11T11:56:53Z
date_published: 2013-08-01T00:00:00Z
date_updated: 2023-09-20T11:15:30Z
day: '01'
department:
- _id: KrCh
doi: 10.1109/LICS.2013.39
ec_funded: 1
external_id:
arxiv:
- '1305.4103'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1305.4103
month: '08'
oa: 1
oa_version: Preprint
page: 331 - 340
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 23499-N23
name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11407
name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
name: Microsoft Research Faculty Fellowship
publication: 28th Annual ACM/IEEE Symposium
publication_status: published
publisher: IEEE
publist_id: '4622'
quality_controlled: '1'
related_material:
record:
- id: '1294'
relation: later_version
status: public
scopus_import: 1
status: public
title: Trading performance for stability in Markov decision processes
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2306'
abstract:
- lang: ger
text: Das Buch ist sowohl eine Einführung in die Themen Linked Data, Open Data und
Open Linked Data als es auch den konkreten Bezug auf Bibliotheken behandelt. Hierzu
werden konkrete Anwendungsprojekte beschrieben. Der Band wendet sich dabei sowohl
an Personen aus der Bibliothekspraxis als auch an Personen aus dem Bibliotheksmanagement,
die noch nicht mit dem Thema vertraut sind.
alternative_title:
- Bibliotheks- und Informationspraxis
article_processing_charge: No
author:
- first_name: Patrick
full_name: Danowski, Patrick
id: 2EBD1598-F248-11E8-B48F-1D18A9856A87
last_name: Danowski
orcid: 0000-0002-6026-4409
- first_name: Adrian
full_name: Pohl, Adrian
last_name: Pohl
citation:
ama: Danowski P, Pohl A. (Open) Linked Data in Bibliotheken. Vol 50. De Gruyter;
2013. doi:10.1515/9783110278736
apa: Danowski, P., & Pohl, A. (2013). (Open) Linked Data in Bibliotheken
(Vol. 50). De Gruyter. https://doi.org/10.1515/9783110278736
chicago: Danowski, Patrick, and Adrian Pohl. (Open) Linked Data in Bibliotheken.
Vol. 50. De Gruyter, 2013. https://doi.org/10.1515/9783110278736.
ieee: P. Danowski and A. Pohl, (Open) Linked Data in Bibliotheken, vol. 50.
De Gruyter, 2013.
ista: Danowski P, Pohl A. 2013. (Open) Linked Data in Bibliotheken, De Gruyter,p.
mla: Danowski, Patrick, and Adrian Pohl. (Open) Linked Data in Bibliotheken.
Vol. 50, De Gruyter, 2013, doi:10.1515/9783110278736.
short: P. Danowski, A. Pohl, (Open) Linked Data in Bibliotheken, De Gruyter, 2013.
date_created: 2018-12-11T11:56:53Z
date_published: 2013-09-13T00:00:00Z
date_updated: 2021-12-21T12:17:19Z
day: '13'
ddc:
- '020'
department:
- _id: E-Lib
doi: 10.1515/9783110278736
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file_size: 1830232
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has_accepted_license: '1'
intvolume: ' 50'
language:
- iso: ger
license: https://creativecommons.org/licenses/by/4.0/
month: '09'
oa: 1
oa_version: Published Version
publication_identifier:
eisbn:
- 9-783-1102-7873-6
isbn:
- ' 978-3-11-027634-3'
issn:
- 2191-3587
publication_status: published
publisher: De Gruyter
publist_id: '4621'
pubrep_id: '725'
quality_controlled: '1'
status: public
title: (Open) Linked Data in Bibliotheken
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: book
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 50
year: '2013'
...
---
_id: '2315'
abstract:
- lang: eng
text: ' We study the effects of random scatterers on the ground state of the
one-dimensional Lieb-Liniger model of interacting bosons on the unit interval
in the Gross-Pitaevskii regime. We prove that Bose Einstein condensation survives
even a strong random potential with a high density of scatterers. The character
of the wave function of the condensate, however, depends in an essential way on
the interplay between randomness and the strength of the two-body interaction.
For low density of scatterers or strong interactions the wave function extends
over the whole interval. High density of scatterers and weak interaction, on the
other hand, leads to localization of the wave function in a fragmented subset
of the interval. '
article_processing_charge: No
arxiv: 1
author:
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
- first_name: Jakob
full_name: Yngvason, Jakob
last_name: Yngvason
- first_name: Valentin
full_name: Zagrebnov, Valentin
last_name: Zagrebnov
citation:
ama: 'Seiringer R, Yngvason J, Zagrebnov V. Disordered Bose-Einstein condensates
with interaction. In: World Scientific Publishing; 2013:610-619. doi:10.1142/9789814449243_0063'
apa: 'Seiringer, R., Yngvason, J., & Zagrebnov, V. (2013). Disordered Bose-Einstein
condensates with interaction (pp. 610–619). Presented at the ICMP: International
Congress on Mathematical Physics, World Scientific Publishing. https://doi.org/10.1142/9789814449243_0063'
chicago: Seiringer, Robert, Jakob Yngvason, and Valentin Zagrebnov. “Disordered
Bose-Einstein Condensates with Interaction,” 610–19. World Scientific Publishing,
2013. https://doi.org/10.1142/9789814449243_0063.
ieee: 'R. Seiringer, J. Yngvason, and V. Zagrebnov, “Disordered Bose-Einstein condensates
with interaction,” presented at the ICMP: International Congress on Mathematical
Physics, 2013, pp. 610–619.'
ista: 'Seiringer R, Yngvason J, Zagrebnov V. 2013. Disordered Bose-Einstein condensates
with interaction. ICMP: International Congress on Mathematical Physics, 610–619.'
mla: Seiringer, Robert, et al. Disordered Bose-Einstein Condensates with Interaction.
World Scientific Publishing, 2013, pp. 610–19, doi:10.1142/9789814449243_0063.
short: R. Seiringer, J. Yngvason, V. Zagrebnov, in:, World Scientific Publishing,
2013, pp. 610–619.
conference:
name: 'ICMP: International Congress on Mathematical Physics'
date_created: 2018-12-11T11:56:57Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2021-01-12T06:56:43Z
doi: 10.1142/9789814449243_0063
extern: '1'
external_id:
arxiv:
- '1209.4046'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1209.4046
oa: 1
oa_version: None
page: 610-619
publication_status: published
publisher: World Scientific Publishing
publist_id: '4612'
status: public
title: Disordered Bose-Einstein condensates with interaction
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2319'
abstract:
- lang: eng
text: In a recent paper [7] we give the first rigorous derivation of the celebrated
Ginzburg-Landau (GL)theory, starting from the microscopic Bardeen- Cooper-Schrieffer
(BCS)model. Here we present our results in the simplified case of a one-dimensional
system of particles interacting via a δ-potential.
author:
- first_name: Rupert
full_name: Frank, Rupert L
last_name: Frank
- first_name: Christian
full_name: Hainzl, Christian
last_name: Hainzl
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
- first_name: Jan
full_name: Solovej, Jan P
last_name: Solovej
citation:
ama: 'Frank R, Hainzl C, Seiringer R, Solovej J. Derivation of Ginzburg-Landau
theory for a one-dimensional system with contact interaction. In: Springer; 2013:57-88.
doi:10.1007/978-3-0348-0531-5_3'
apa: 'Frank, R., Hainzl, C., Seiringer, R., & Solovej, J. (2013). Derivation
of Ginzburg-Landau theory for a one-dimensional system with contact interaction
(pp. 57–88). Presented at the OTAMP: Operator Theory, Analysis and Mathematical
Physics, Springer. https://doi.org/10.1007/978-3-0348-0531-5_3'
chicago: Frank, Rupert, Christian Hainzl, Robert Seiringer, and Jan Solovej. “ Derivation
of Ginzburg-Landau Theory for a One-Dimensional System with Contact Interaction,”
57–88. Springer, 2013. https://doi.org/10.1007/978-3-0348-0531-5_3.
ieee: 'R. Frank, C. Hainzl, R. Seiringer, and J. Solovej, “ Derivation of Ginzburg-Landau
theory for a one-dimensional system with contact interaction,” presented at the
OTAMP: Operator Theory, Analysis and Mathematical Physics, 2013, pp. 57–88.'
ista: 'Frank R, Hainzl C, Seiringer R, Solovej J. 2013. Derivation of Ginzburg-Landau
theory for a one-dimensional system with contact interaction. OTAMP: Operator
Theory, Analysis and Mathematical Physics, 57–88.'
mla: Frank, Rupert, et al. Derivation of Ginzburg-Landau Theory for a One-Dimensional
System with Contact Interaction. Springer, 2013, pp. 57–88, doi:10.1007/978-3-0348-0531-5_3.
short: R. Frank, C. Hainzl, R. Seiringer, J. Solovej, in:, Springer, 2013, pp. 57–88.
conference:
name: 'OTAMP: Operator Theory, Analysis and Mathematical Physics'
date_created: 2018-12-11T11:56:58Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2021-01-12T06:56:45Z
day: '01'
doi: 10.1007/978-3-0348-0531-5_3
extern: 1
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1103.1866
month: '01'
oa: 1
page: 57 - 88
publication_status: published
publisher: Springer
publist_id: '4608'
quality_controlled: 0
status: public
title: ' Derivation of Ginzburg-Landau theory for a one-dimensional system with contact
interaction'
type: conference
year: '2013'
...
---
_id: '2327'
abstract:
- lang: eng
text: 'We define the model-measuring problem: given a model M and specification
φ, what is the maximal distance ρ such that all models M′ within distance ρ from
M satisfy (or violate) φ. The model measuring problem presupposes a distance function
on models. We concentrate on automatic distance functions, which are defined by
weighted automata. The model-measuring problem subsumes several generalizations
of the classical model-checking problem, in particular, quantitative model-checking
problems that measure the degree of satisfaction of a specification, and robustness
problems that measure how much a model can be perturbed without violating the
specification. We show that for automatic distance functions, and ω-regular linear-time
and branching-time specifications, the model-measuring problem can be solved.
We use automata-theoretic model-checking methods for model measuring, replacing
the emptiness question for standard word and tree automata by the optimal-weight
question for the weighted versions of these automata. We consider weighted automata
that accumulate weights by maximizing, summing, discounting, and limit averaging.
We give several examples of using the model-measuring problem to compute various
notions of robustness and quantitative satisfaction for temporal specifications.'
alternative_title:
- LNCS
author:
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Jan
full_name: Otop, Jan
id: 2FC5DA74-F248-11E8-B48F-1D18A9856A87
last_name: Otop
citation:
ama: Henzinger TA, Otop J. From model checking to model measuring. 2013;8052:273-287.
doi:10.1007/978-3-642-40184-8_20
apa: 'Henzinger, T. A., & Otop, J. (2013). From model checking to model measuring.
Presented at the CONCUR: Concurrency Theory, Buenos Aires, Argentina: Springer.
https://doi.org/10.1007/978-3-642-40184-8_20'
chicago: Henzinger, Thomas A, and Jan Otop. “From Model Checking to Model Measuring.”
Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-40184-8_20.
ieee: T. A. Henzinger and J. Otop, “From model checking to model measuring,” vol.
8052. Springer, pp. 273–287, 2013.
ista: Henzinger TA, Otop J. 2013. From model checking to model measuring. 8052,
273–287.
mla: Henzinger, Thomas A., and Jan Otop. From Model Checking to Model Measuring.
Vol. 8052, Springer, 2013, pp. 273–87, doi:10.1007/978-3-642-40184-8_20.
short: T.A. Henzinger, J. Otop, 8052 (2013) 273–287.
conference:
end_date: 2013-08-30
location: Buenos Aires, Argentina
name: 'CONCUR: Concurrency Theory'
start_date: 2013-08-27
date_created: 2018-12-11T11:57:00Z
date_published: 2013-08-01T00:00:00Z
date_updated: 2023-02-23T12:25:26Z
day: '01'
ddc:
- '005'
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-642-40184-8_20
file:
- access_level: open_access
checksum: 4c04695c4bfdf2119cd4f5d1babc3e8a
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:17:45Z
date_updated: 2020-07-14T12:45:38Z
file_id: '5301'
file_name: IST-2013-129-v1+1_concur.pdf
file_size: 378587
relation: main_file
file_date_updated: 2020-07-14T12:45:38Z
has_accepted_license: '1'
intvolume: ' 8052'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Submitted Version
page: 273 - 287
publication_status: published
publisher: Springer
publist_id: '4599'
pubrep_id: '129'
quality_controlled: '1'
related_material:
record:
- id: '5417'
relation: earlier_version
status: public
series_title: Lecture Notes in Computer Science
status: public
title: From model checking to model measuring
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8052
year: '2013'
...
---
_id: '2328'
abstract:
- lang: eng
text: "Linearizability of concurrent data structures is usually proved by monolithic
simulation arguments relying on identifying the so-called linearization points.
Regrettably, such proofs, whether manual or automatic, are often complicated and
scale poorly to advanced non-blocking concurrency patterns, such as helping and
optimistic updates.\r\nIn response, we propose a more modular way of checking
linearizability of concurrent queue algorithms that does not involve identifying
linearization points. We reduce the task of proving linearizability with respect
to the queue specification to establishing four basic properties, each of which
can be proved independently by simpler arguments. As a demonstration of our approach,
we verify the Herlihy and Wing queue, an algorithm that is challenging to verify
by a simulation proof."
alternative_title:
- LNCS
author:
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Ali
full_name: Sezgin, Ali
id: 4C7638DA-F248-11E8-B48F-1D18A9856A87
last_name: Sezgin
- first_name: Viktor
full_name: Vafeiadis, Viktor
last_name: Vafeiadis
citation:
ama: Henzinger TA, Sezgin A, Vafeiadis V. Aspect-oriented linearizability proofs.
2013;8052:242-256. doi:10.1007/978-3-642-40184-8_18
apa: 'Henzinger, T. A., Sezgin, A., & Vafeiadis, V. (2013). Aspect-oriented
linearizability proofs. Presented at the CONCUR: Concurrency Theory, Buenos Aires,
Argentina: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.1007/978-3-642-40184-8_18'
chicago: Henzinger, Thomas A, Ali Sezgin, and Viktor Vafeiadis. “Aspect-Oriented
Linearizability Proofs.” Lecture Notes in Computer Science. Schloss Dagstuhl -
Leibniz-Zentrum für Informatik, 2013. https://doi.org/10.1007/978-3-642-40184-8_18.
ieee: T. A. Henzinger, A. Sezgin, and V. Vafeiadis, “Aspect-oriented linearizability
proofs,” vol. 8052. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, pp. 242–256,
2013.
ista: Henzinger TA, Sezgin A, Vafeiadis V. 2013. Aspect-oriented linearizability
proofs. 8052, 242–256.
mla: Henzinger, Thomas A., et al. Aspect-Oriented Linearizability Proofs.
Vol. 8052, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 242–56,
doi:10.1007/978-3-642-40184-8_18.
short: T.A. Henzinger, A. Sezgin, V. Vafeiadis, 8052 (2013) 242–256.
conference:
end_date: 2013-08-30
location: Buenos Aires, Argentina
name: 'CONCUR: Concurrency Theory'
start_date: 2013-08-27
date_created: 2018-12-11T11:57:01Z
date_published: 2013-08-01T00:00:00Z
date_updated: 2023-02-23T10:16:27Z
day: '01'
ddc:
- '000'
- '004'
department:
- _id: ToHe
doi: 10.1007/978-3-642-40184-8_18
ec_funded: 1
file:
- access_level: open_access
checksum: bdbb520de91751fe0136309ad4ef67e4
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:08:58Z
date_updated: 2020-07-14T12:45:39Z
file_id: '4721'
file_name: IST-2014-197-v1+1_main-queue-verification.pdf
file_size: 337059
relation: main_file
file_date_updated: 2020-07-14T12:45:39Z
has_accepted_license: '1'
intvolume: ' 8052'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Submitted Version
page: 242 - 256
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '267989'
name: Quantitative Reactive Modeling
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '4598'
pubrep_id: '197'
quality_controlled: '1'
related_material:
record:
- id: '1832'
relation: later_version
status: public
scopus_import: 1
series_title: Lecture Notes in Computer Science
status: public
title: Aspect-oriented linearizability proofs
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8052
year: '2013'
...
---
_id: '2329'
abstract:
- lang: eng
text: 'Two-player games on graphs are central in many problems in formal verification
and program analysis such as synthesis and verification of open systems. In this
work, we consider both finite-state game graphs, and recursive game graphs (or
pushdown game graphs) that model the control flow of sequential programs with
recursion. The objectives we study are multidimensional mean-payoff objectives,
where the goal of player 1 is to ensure that the mean-payoff is non-negative in
all dimensions. In pushdown games two types of strategies are relevant: (1) global
strategies, that depend on the entire global history; and (2) modular strategies,
that have only local memory and thus do not depend on the context of invocation.
Our main contributions are as follows: (1) We show that finite-state multidimensional
mean-payoff games can be solved in polynomial time if the number of dimensions
and the maximal absolute value of the weights are fixed; whereas if the number
of dimensions is arbitrary, then the problem is known to be coNP-complete. (2)
We show that pushdown graphs with multidimensional mean-payoff objectives can
be solved in polynomial time. For both (1) and (2) our algorithms are based on
hyperplane separation technique. (3) For pushdown games under global strategies
both one and multidimensional mean-payoff objectives problems are known to be
undecidable, and we show that under modular strategies the multidimensional problem
is also undecidable; under modular strategies the one-dimensional problem is NP-complete.
We show that if the number of modules, the number of exits, and the maximal absolute
value of the weights are fixed, then pushdown games under modular strategies with
one-dimensional mean-payoff objectives can be solved in polynomial time, and if
either the number of exits or the number of modules is unbounded, then the problem
is NP-hard. (4) Finally we show that a fixed parameter tractable algorithm for
finite-state multidimensional mean-payoff games or pushdown games under modular
strategies with one-dimensional mean-payoff objectives would imply the fixed parameter
tractability of parity games.'
alternative_title:
- LNCS
arxiv: 1
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Yaron
full_name: Velner, Yaron
last_name: Velner
citation:
ama: Chatterjee K, Velner Y. Hyperplane separation technique for multidimensional
mean-payoff games. 2013;8052:500-515. doi:10.1007/978-3-642-40184-8_35
apa: 'Chatterjee, K., & Velner, Y. (2013). Hyperplane separation technique for
multidimensional mean-payoff games. Presented at the CONCUR: Concurrency Theory,
Buenos Aires, Argentinia: Springer. https://doi.org/10.1007/978-3-642-40184-8_35'
chicago: Chatterjee, Krishnendu, and Yaron Velner. “Hyperplane Separation Technique
for Multidimensional Mean-Payoff Games.” Lecture Notes in Computer Science. Springer,
2013. https://doi.org/10.1007/978-3-642-40184-8_35.
ieee: K. Chatterjee and Y. Velner, “Hyperplane separation technique for multidimensional
mean-payoff games,” vol. 8052. Springer, pp. 500–515, 2013.
ista: Chatterjee K, Velner Y. 2013. Hyperplane separation technique for multidimensional
mean-payoff games. 8052, 500–515.
mla: Chatterjee, Krishnendu, and Yaron Velner. Hyperplane Separation Technique
for Multidimensional Mean-Payoff Games. Vol. 8052, Springer, 2013, pp. 500–15,
doi:10.1007/978-3-642-40184-8_35.
short: K. Chatterjee, Y. Velner, 8052 (2013) 500–515.
conference:
end_date: 2013-08-30
location: Buenos Aires, Argentinia
name: 'CONCUR: Concurrency Theory'
start_date: 2013-08-27
date_created: 2018-12-11T11:57:01Z
date_published: 2013-08-01T00:00:00Z
date_updated: 2023-02-23T13:00:42Z
day: '01'
department:
- _id: KrCh
doi: 10.1007/978-3-642-40184-8_35
ec_funded: 1
external_id:
arxiv:
- '1210.3141'
intvolume: ' 8052'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1210.3141
month: '08'
oa: 1
oa_version: Preprint
page: 500 - 515
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 23499-N23
name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11407
name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
name: Microsoft Research Faculty Fellowship
publication_status: published
publisher: Springer
publist_id: '4597'
quality_controlled: '1'
related_material:
record:
- id: '717'
relation: later_version
status: public
scopus_import: 1
series_title: Lecture Notes in Computer Science
status: public
title: Hyperplane separation technique for multidimensional mean-payoff games
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8052
year: '2013'
...
---
_id: '2404'
abstract:
- lang: eng
text: The Lieb-Thirring inequalities give a bound on the negative eigenvalues of
a Schrödinger operator in terms of an Lp-norm of the potential. These are dual
to bounds on the H1-norms of a system of orthonormal functions. Here we extend
these bounds to analogous inequalities for perturbations of the Fermi sea of noninteracting
particles (i.e., for perturbations of the continuous spectrum of the Laplacian
by local potentials).
author:
- first_name: Rupert
full_name: Frank, Rupert L
last_name: Frank
- first_name: Mathieu
full_name: Lewin, Mathieu
last_name: Lewin
- first_name: Élliott
full_name: Lieb, Élliott H
last_name: Lieb
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Frank R, Lewin M, Lieb É, Seiringer R. A positive density analogue of the Lieb-Thirring
inequality. Duke Mathematical Journal. 2013;162(3):435-495. doi:10.1215/00127094-2019477
apa: Frank, R., Lewin, M., Lieb, É., & Seiringer, R. (2013). A positive density
analogue of the Lieb-Thirring inequality. Duke Mathematical Journal. Duke
University Press. https://doi.org/10.1215/00127094-2019477
chicago: Frank, Rupert, Mathieu Lewin, Élliott Lieb, and Robert Seiringer. “A Positive
Density Analogue of the Lieb-Thirring Inequality.” Duke Mathematical Journal.
Duke University Press, 2013. https://doi.org/10.1215/00127094-2019477.
ieee: R. Frank, M. Lewin, É. Lieb, and R. Seiringer, “A positive density analogue
of the Lieb-Thirring inequality,” Duke Mathematical Journal, vol. 162,
no. 3. Duke University Press, pp. 435–495, 2013.
ista: Frank R, Lewin M, Lieb É, Seiringer R. 2013. A positive density analogue of
the Lieb-Thirring inequality. Duke Mathematical Journal. 162(3), 435–495.
mla: Frank, Rupert, et al. “A Positive Density Analogue of the Lieb-Thirring Inequality.”
Duke Mathematical Journal, vol. 162, no. 3, Duke University Press, 2013,
pp. 435–95, doi:10.1215/00127094-2019477.
short: R. Frank, M. Lewin, É. Lieb, R. Seiringer, Duke Mathematical Journal 162
(2013) 435–495.
date_created: 2018-12-11T11:57:28Z
date_published: 2013-02-01T00:00:00Z
date_updated: 2021-01-12T06:57:17Z
day: '01'
doi: 10.1215/00127094-2019477
extern: 1
intvolume: ' 162'
issue: '3'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1108.4246
month: '02'
oa: 1
page: 435 - 495
publication: Duke Mathematical Journal
publication_status: published
publisher: Duke University Press
publist_id: '4521'
quality_controlled: 0
status: public
title: A positive density analogue of the Lieb-Thirring inequality
type: journal_article
volume: 162
year: '2013'
...
---
_id: '2405'
abstract:
- lang: eng
text: We consider the bipolaron in the Pekar-Tomasevich approximation and address
the question whether the ground state is spherically symmetric or not. Numerical
analysis has, so far, not completely settled the question. Our contribution is
to prove rigorously that the ground state remains spherical for small values of
the electron-electron Coulomb repulsion.
author:
- first_name: Rupert
full_name: Frank, Rupert L
last_name: Frank
- first_name: Élliott
full_name: Lieb, Élliott H
last_name: Lieb
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Frank R, Lieb É, Seiringer R. Symmetry of bipolaron bound states for small
Coulomb repulsion. Communications in Mathematical Physics. 2013;319(2):557-573.
doi:10.1007/s00220-012-1604-y
apa: Frank, R., Lieb, É., & Seiringer, R. (2013). Symmetry of bipolaron bound
states for small Coulomb repulsion. Communications in Mathematical Physics.
Springer. https://doi.org/10.1007/s00220-012-1604-y
chicago: Frank, Rupert, Élliott Lieb, and Robert Seiringer. “Symmetry of Bipolaron
Bound States for Small Coulomb Repulsion.” Communications in Mathematical Physics.
Springer, 2013. https://doi.org/10.1007/s00220-012-1604-y.
ieee: R. Frank, É. Lieb, and R. Seiringer, “Symmetry of bipolaron bound states for
small Coulomb repulsion,” Communications in Mathematical Physics, vol.
319, no. 2. Springer, pp. 557–573, 2013.
ista: Frank R, Lieb É, Seiringer R. 2013. Symmetry of bipolaron bound states for
small Coulomb repulsion. Communications in Mathematical Physics. 319(2), 557–573.
mla: Frank, Rupert, et al. “Symmetry of Bipolaron Bound States for Small Coulomb
Repulsion.” Communications in Mathematical Physics, vol. 319, no. 2, Springer,
2013, pp. 557–73, doi:10.1007/s00220-012-1604-y.
short: R. Frank, É. Lieb, R. Seiringer, Communications in Mathematical Physics 319
(2013) 557–573.
date_created: 2018-12-11T11:57:28Z
date_published: 2013-04-01T00:00:00Z
date_updated: 2021-01-12T06:57:17Z
day: '01'
doi: 10.1007/s00220-012-1604-y
extern: 1
intvolume: ' 319'
issue: '2'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1201.3954
month: '04'
oa: 1
page: 557 - 573
publication: Communications in Mathematical Physics
publication_status: published
publisher: Springer
publist_id: '4522'
quality_controlled: 0
status: public
title: Symmetry of bipolaron bound states for small Coulomb repulsion
type: journal_article
volume: 319
year: '2013'
...
---
_id: '2408'
abstract:
- lang: eng
text: We investigate the low-energy excitation spectrum of a Bose gas confined in
a trap, with weak long-range repulsive interactions. In particular, we prove that
the spectrum can be described in terms of the eigenvalues of an effective one-particle
operator, as predicted by the Bogoliubov approximation.
author:
- first_name: Philip
full_name: Grech, Philip
last_name: Grech
- first_name: Robert
full_name: Robert Seiringer
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Grech P, Seiringer R. The excitation spectrum for weakly interacting Bosons
in a trap. Communications in Mathematical Physics. 2013;322(2):559-591.
doi:10.1007/s00220-013-1736-8
apa: Grech, P., & Seiringer, R. (2013). The excitation spectrum for weakly interacting
Bosons in a trap. Communications in Mathematical Physics. Springer. https://doi.org/10.1007/s00220-013-1736-8
chicago: Grech, Philip, and Robert Seiringer. “The Excitation Spectrum for Weakly
Interacting Bosons in a Trap.” Communications in Mathematical Physics.
Springer, 2013. https://doi.org/10.1007/s00220-013-1736-8.
ieee: P. Grech and R. Seiringer, “The excitation spectrum for weakly interacting
Bosons in a trap,” Communications in Mathematical Physics, vol. 322, no.
2. Springer, pp. 559–591, 2013.
ista: Grech P, Seiringer R. 2013. The excitation spectrum for weakly interacting
Bosons in a trap. Communications in Mathematical Physics. 322(2), 559–591.
mla: Grech, Philip, and Robert Seiringer. “The Excitation Spectrum for Weakly Interacting
Bosons in a Trap.” Communications in Mathematical Physics, vol. 322, no.
2, Springer, 2013, pp. 559–91, doi:10.1007/s00220-013-1736-8.
short: P. Grech, R. Seiringer, Communications in Mathematical Physics 322 (2013)
559–591.
date_created: 2018-12-11T11:57:29Z
date_published: 2013-09-01T00:00:00Z
date_updated: 2021-01-12T06:57:18Z
day: '01'
doi: 10.1007/s00220-013-1736-8
extern: 1
intvolume: ' 322'
issue: '2'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1205.5259
month: '09'
oa: 1
page: 559 - 591
publication: Communications in Mathematical Physics
publication_status: published
publisher: Springer
publist_id: '4518'
quality_controlled: 0
status: public
title: The excitation spectrum for weakly interacting Bosons in a trap
type: journal_article
volume: 322
year: '2013'
...
---
_id: '2410'
abstract:
- lang: eng
text: 'Here, we describe a novel virulent bacteriophage that infects Bacillus weihenstephanensis,
isolated from soil in Austria. It is the first phage to be discovered that infects
this species. Here, we present the complete genome sequence of this podovirus. '
author:
- first_name: Rodrigo A
full_name: Fernandes Redondo, Rodrigo A
id: 409D5C96-F248-11E8-B48F-1D18A9856A87
last_name: Fernandes Redondo
orcid: 0000-0002-5837-2793
- first_name: Anne
full_name: Kupczok, Anne
id: 2BB22BC2-F248-11E8-B48F-1D18A9856A87
last_name: Kupczok
- first_name: Gertraud
full_name: Stift, Gertraud
id: 2DB195CA-F248-11E8-B48F-1D18A9856A87
last_name: Stift
- first_name: Jonathan P
full_name: Bollback, Jonathan P
id: 2C6FA9CC-F248-11E8-B48F-1D18A9856A87
last_name: Bollback
orcid: 0000-0002-4624-4612
citation:
ama: Fernandes Redondo RA, Kupczok A, Stift G, Bollback JP. Complete genome sequence
of the novel phage MG-B1 infecting bacillus weihenstephanensis. Genome Announcements.
2013;1(3). doi:10.1128/genomeA.00216-13
apa: Fernandes Redondo, R. A., Kupczok, A., Stift, G., & Bollback, J. P. (2013).
Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis.
Genome Announcements. American Society for Microbiology. https://doi.org/10.1128/genomeA.00216-13
chicago: Fernandes Redondo, Rodrigo A, Anne Kupczok, Gertraud Stift, and Jonathan
P Bollback. “Complete Genome Sequence of the Novel Phage MG-B1 Infecting Bacillus
Weihenstephanensis.” Genome Announcements. American Society for Microbiology,
2013. https://doi.org/10.1128/genomeA.00216-13.
ieee: R. A. Fernandes Redondo, A. Kupczok, G. Stift, and J. P. Bollback, “Complete
genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis,”
Genome Announcements, vol. 1, no. 3. American Society for Microbiology,
2013.
ista: Fernandes Redondo RA, Kupczok A, Stift G, Bollback JP. 2013. Complete genome
sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis. Genome
Announcements. 1(3).
mla: Fernandes Redondo, Rodrigo A., et al. “Complete Genome Sequence of the Novel
Phage MG-B1 Infecting Bacillus Weihenstephanensis.” Genome Announcements,
vol. 1, no. 3, American Society for Microbiology, 2013, doi:10.1128/genomeA.00216-13.
short: R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements
1 (2013).
date_created: 2018-12-11T11:57:30Z
date_published: 2013-06-13T00:00:00Z
date_updated: 2021-01-12T06:57:19Z
day: '13'
ddc:
- '576'
department:
- _id: JoBo
- _id: LifeSc
doi: 10.1128/genomeA.00216-13
file:
- access_level: open_access
checksum: 0751ec74b695567e0cdf02aaf9c26829
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:17:36Z
date_updated: 2020-07-14T12:45:40Z
file_id: '5291'
file_name: IST-2015-398-v1+1_Genome_Announc.-2013-Redondo-.pdf
file_size: 130026
relation: main_file
file_date_updated: 2020-07-14T12:45:40Z
has_accepted_license: '1'
intvolume: ' 1'
issue: '3'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: Genome Announcements
publication_status: published
publisher: American Society for Microbiology
publist_id: '4516'
pubrep_id: '398'
quality_controlled: '1'
scopus_import: 1
status: public
title: Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2013'
...
---
_id: '2412'
abstract:
- lang: eng
text: 'Background: The CRISPR/Cas system is known to act as an adaptive and heritable
immune system in Eubacteria and Archaea. Immunity is encoded in an array of spacer
sequences. Each spacer can provide specific immunity to invasive elements that
carry the same or a similar sequence. Even in closely related strains, spacer
content is very dynamic and evolves quickly. Standard models of nucleotide evolutioncannot
be applied to quantify its rate of change since processes other than single nucleotide
changes determine its evolution.Methods We present probabilistic models that are
specific for spacer content evolution. They account for the different processes
of insertion and deletion. Insertions can be constrained to occur on one end only
or are allowed to occur throughout the array. One deletion event can affect one
spacer or a whole fragment of adjacent spacers. Parameters of the underlying models
are estimated for a pair of arrays by maximum likelihood using explicit ancestor
enumeration.Results Simulations show that parameters are well estimated on average
under the models presented here. There is a bias in the rate estimation when including
fragment deletions. The models also estimate times between pairs of strains. But
with increasing time, spacer overlap goes to zero, and thus there is an upper
bound on the distance that can be estimated. Spacer content similarities are displayed
in a distance based phylogeny using the estimated times.We use the presented models
to analyze different Yersinia pestis data sets and find that the results among
them are largely congruent. The models also capture the variation in diversity
of spacers among the data sets. A comparison of spacer-based phylogenies and Cas
gene phylogenies shows that they resolve very different time scales for this data
set.Conclusions The simulations and data analyses show that the presented models
are useful for quantifying spacer content evolution and for displaying spacer
content similarities of closely related strains in a phylogeny. This allows for
comparisons of different CRISPR arrays or for comparisons between CRISPR arrays
and nucleotide substitution rates.'
author:
- first_name: Anne
full_name: Kupczok, Anne
id: 2BB22BC2-F248-11E8-B48F-1D18A9856A87
last_name: Kupczok
- first_name: Jonathan P
full_name: Bollback, Jonathan P
id: 2C6FA9CC-F248-11E8-B48F-1D18A9856A87
last_name: Bollback
orcid: 0000-0002-4624-4612
citation:
ama: Kupczok A, Bollback JP. Probabilistic models for CRISPR spacer content evolution
. BMC Evolutionary Biology. 2013;13(1):54-54. doi:10.1186/1471-2148-13-54
apa: Kupczok, A., & Bollback, J. P. (2013). Probabilistic models for CRISPR
spacer content evolution . BMC Evolutionary Biology. BioMed Central. https://doi.org/10.1186/1471-2148-13-54
chicago: Kupczok, Anne, and Jonathan P Bollback. “Probabilistic Models for CRISPR
Spacer Content Evolution .” BMC Evolutionary Biology. BioMed Central, 2013.
https://doi.org/10.1186/1471-2148-13-54.
ieee: A. Kupczok and J. P. Bollback, “Probabilistic models for CRISPR spacer content
evolution ,” BMC Evolutionary Biology, vol. 13, no. 1. BioMed Central,
pp. 54–54, 2013.
ista: Kupczok A, Bollback JP. 2013. Probabilistic models for CRISPR spacer content
evolution . BMC Evolutionary Biology. 13(1), 54–54.
mla: Kupczok, Anne, and Jonathan P. Bollback. “Probabilistic Models for CRISPR Spacer
Content Evolution .” BMC Evolutionary Biology, vol. 13, no. 1, BioMed Central,
2013, pp. 54–54, doi:10.1186/1471-2148-13-54.
short: A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
date_created: 2018-12-11T11:57:31Z
date_published: 2013-02-26T00:00:00Z
date_updated: 2021-01-12T06:57:20Z
day: '26'
ddc:
- '576'
department:
- _id: JoBo
doi: 10.1186/1471-2148-13-54
file:
- access_level: open_access
checksum: 029c7e0b198c19312b66ecce3cabb22f
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:17:15Z
date_updated: 2020-07-14T12:45:40Z
file_id: '5268'
file_name: IST-2015-397-v1+1_1471-2148-13-54.pdf
file_size: 518729
relation: main_file
file_date_updated: 2020-07-14T12:45:40Z
has_accepted_license: '1'
intvolume: ' 13'
issue: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 54 - 54
publication: BMC Evolutionary Biology
publication_status: published
publisher: BioMed Central
publist_id: '4514'
pubrep_id: '397'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Probabilistic models for CRISPR spacer content evolution '
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2013'
...
---
_id: '6768'
abstract:
- lang: eng
text: The paper presents an algorithm that applies a stack filter simulating the
Mean Curvature Motion equation via a finite difference scheme.
article_type: original
author:
- first_name: Marco
full_name: Mondelli, Marco
id: 27EB676C-8706-11E9-9510-7717E6697425
last_name: Mondelli
orcid: 0000-0002-3242-7020
citation:
ama: Mondelli M. A finite difference scheme for the stack filter simulating the
MCM. Image Processing On Line. 2013;3:68-111. doi:10.5201/ipol.2013.53
apa: Mondelli, M. (2013). A finite difference scheme for the stack filter simulating
the MCM. Image Processing On Line. Image Processing On Line. https://doi.org/10.5201/ipol.2013.53
chicago: Mondelli, Marco. “A Finite Difference Scheme for the Stack Filter Simulating
the MCM.” Image Processing On Line. Image Processing On Line, 2013. https://doi.org/10.5201/ipol.2013.53.
ieee: M. Mondelli, “A finite difference scheme for the stack filter simulating the
MCM,” Image Processing On Line, vol. 3. Image Processing On Line, pp. 68–111,
2013.
ista: Mondelli M. 2013. A finite difference scheme for the stack filter simulating
the MCM. Image Processing On Line. 3, 68–111.
mla: Mondelli, Marco. “A Finite Difference Scheme for the Stack Filter Simulating
the MCM.” Image Processing On Line, vol. 3, Image Processing On Line, 2013,
pp. 68–111, doi:10.5201/ipol.2013.53.
short: M. Mondelli, Image Processing On Line 3 (2013) 68–111.
date_created: 2019-08-05T12:30:38Z
date_published: 2013-07-11T00:00:00Z
date_updated: 2021-01-12T08:08:56Z
day: '11'
ddc:
- '510'
doi: 10.5201/ipol.2013.53
extern: '1'
file:
- access_level: open_access
checksum: 83b7d429bc248c6c461229d3504fb139
content_type: application/pdf
creator: dernst
date_created: 2019-08-05T12:33:40Z
date_updated: 2020-07-14T12:47:40Z
file_id: '6769'
file_name: 2013_IPOL_Mondelli.pdf
file_size: 4306158
relation: main_file
file_date_updated: 2020-07-14T12:47:40Z
has_accepted_license: '1'
intvolume: ' 3'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '07'
oa: 1
oa_version: Published Version
page: 68-111
publication: Image Processing On Line
publication_identifier:
issn:
- 2105-1232
publication_status: published
publisher: Image Processing On Line
quality_controlled: '1'
status: public
title: A finite difference scheme for the stack filter simulating the MCM
tmp:
image: /images/cc_by_nc_sa.png
legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
BY-NC-SA 4.0)
short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2013'
...
---
_id: '476'
abstract:
- lang: eng
text: 'Maternal exposure to infection occurring mid-gestation produces a three-fold
increase in the risk of schizophrenia in the offspring. The critical initiating
factor appears to be the maternal immune activation (MIA) that follows infection.
This process can be induced in rodents by exposure of pregnant dams to the viral
mimic Poly I:C, which triggers an immune response that results in structural,
functional, behavioral, and electrophysiological phenotypes in the adult offspring
that model those seen in schizophrenia. We used this model to explore the role
of synchronization in brain neural networks, a process thought to be dysfunctional
in schizophrenia and previously associated with positive, negative, and cognitive
symptoms of schizophrenia. Exposure of pregnant dams to Poly I:C on GD15 produced
an impairment in long-range neural synchrony in adult offspring between two regions
implicated in schizophrenia pathology; the hippocampus and the medial prefrontal
cortex (mPFC). This reduction in synchrony was ameliorated by acute doses of the
antipsychotic clozapine. MIA animals have previously been shown to have impaired
pre-pulse inhibition (PPI), a gold-standard measure of schizophrenia-like deficits
in animal models. Our data showed that deficits in synchrony were positively correlated
with the impairments in PPI. Subsequent analysis of LFP activity during the PPI
response also showed that reduced coupling between the mPFC and the hippocampus
following processing of the pre-pulse was associated with reduced PPI. The ability
of the MIA intervention to model neurodevelopmental aspects of schizophrenia pathology
provides a useful platform from which to investigate the ontogeny of aberrant
synchronous processes. Further, the way in which the model expresses translatable
deficits such as aberrant synchrony and reduced PPI will allow researchers to
explore novel intervention strategies targeted to these changes. '
author:
- first_name: Desiree
full_name: Dickerson, Desiree
id: 444EB89E-F248-11E8-B48F-1D18A9856A87
last_name: Dickerson
- first_name: David
full_name: Bilkey, David
last_name: Bilkey
citation:
ama: 'Dickerson D, Bilkey D. Aberrant neural synchrony in the maternal immune activation
model: Using translatable measures to explore targeted interventions. Frontiers
in Behavioral Neuroscience. 2013;7(DEC). doi:10.3389/fnbeh.2013.00217'
apa: 'Dickerson, D., & Bilkey, D. (2013). Aberrant neural synchrony in the maternal
immune activation model: Using translatable measures to explore targeted interventions.
Frontiers in Behavioral Neuroscience. Frontiers Research Foundation. https://doi.org/10.3389/fnbeh.2013.00217'
chicago: 'Dickerson, Desiree, and David Bilkey. “Aberrant Neural Synchrony in the
Maternal Immune Activation Model: Using Translatable Measures to Explore Targeted
Interventions.” Frontiers in Behavioral Neuroscience. Frontiers Research
Foundation, 2013. https://doi.org/10.3389/fnbeh.2013.00217.'
ieee: 'D. Dickerson and D. Bilkey, “Aberrant neural synchrony in the maternal immune
activation model: Using translatable measures to explore targeted interventions,”
Frontiers in Behavioral Neuroscience, vol. 7, no. DEC. Frontiers Research
Foundation, 2013.'
ista: 'Dickerson D, Bilkey D. 2013. Aberrant neural synchrony in the maternal immune
activation model: Using translatable measures to explore targeted interventions.
Frontiers in Behavioral Neuroscience. 7(DEC).'
mla: 'Dickerson, Desiree, and David Bilkey. “Aberrant Neural Synchrony in the Maternal
Immune Activation Model: Using Translatable Measures to Explore Targeted Interventions.”
Frontiers in Behavioral Neuroscience, vol. 7, no. DEC, Frontiers Research
Foundation, 2013, doi:10.3389/fnbeh.2013.00217.'
short: D. Dickerson, D. Bilkey, Frontiers in Behavioral Neuroscience 7 (2013).
date_created: 2018-12-11T11:46:41Z
date_published: 2013-12-27T00:00:00Z
date_updated: 2021-01-12T08:00:53Z
day: '27'
ddc:
- '571'
department:
- _id: JoCs
doi: 10.3389/fnbeh.2013.00217
file:
- access_level: open_access
checksum: cd7183121e56251176100ccac165c95c
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:15:10Z
date_updated: 2020-07-14T12:46:35Z
file_id: '5128'
file_name: IST-2018-953-v1+1_2013_Dickerson_Aberrant_neural.pdf
file_size: 530134
relation: main_file
file_date_updated: 2020-07-14T12:46:35Z
has_accepted_license: '1'
intvolume: ' 7'
issue: DEC
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: Frontiers in Behavioral Neuroscience
publication_status: published
publisher: Frontiers Research Foundation
publist_id: '7346'
pubrep_id: '953'
quality_controlled: '1'
status: public
title: 'Aberrant neural synchrony in the maternal immune activation model: Using translatable
measures to explore targeted interventions'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2013'
...
---
_id: '500'
abstract:
- lang: eng
text: 'Background: Reassortment between the RNA segments encoding haemagglutinin
(HA) and neuraminidase (NA), the major antigenic influenza proteins, produces
viruses with novel HA and NA subtype combinations and has preceded the emergence
of pandemic strains. It has been suggested that productive viral infection requires
a balance in the level of functional activity of HA and NA, arising from their
closely interacting roles in the viral life cycle, and that this functional balance
could be mediated by genetic changes in the HA and NA. Here, we investigate how
the selective pressure varies for H7 avian influenza HA on different NA subtype
backgrounds. Results: By extending Bayesian stochastic mutational mapping methods
to calculate the ratio of the rate of non-synonymous change to the rate of synonymous
change (d N/d S), we found the average d N/d S across the avian influenza H7 HA1
region to be significantly greater on an N2 NA subtype background than on an N1,
N3 or N7 background. Observed differences in evolutionary rates of H7 HA on different
NA subtype backgrounds could not be attributed to underlying differences between
avian host species or virus pathogenicity. Examination of d N/d S values for each
subtype on a site-by-site basis indicated that the elevated d N/d S on the N2
NA background was a result of increased selection, rather than a relaxation of
selective constraint. Conclusions: Our results are consistent with the hypothesis
that reassortment exposes influenza HA to significant changes in selective pressure
through genetic interactions with NA. Such epistatic effects might be explicitly
accounted for in future models of influenza evolution.'
acknowledgement: "This work was supported by the Biotechnology and Biological Sciences
Research Council, the Government of the Republic of Panama, the Interdisciplinary
Centre for Human and Avian Influenza Research (www.ichair-flu.org) funded by the
Scottish Funding Council, and the Institute for Science and Technology Austria.\r\nCC
BY 2.0\r\n"
article_number: '222'
author:
- first_name: Melissa
full_name: Ward, Melissa
last_name: Ward
- first_name: Samantha
full_name: Lycett, Samantha
last_name: Lycett
- first_name: Dorita
full_name: Avila, Dorita
last_name: Avila
- first_name: Jonathan P
full_name: Bollback, Jonathan P
id: 2C6FA9CC-F248-11E8-B48F-1D18A9856A87
last_name: Bollback
orcid: 0000-0002-4624-4612
- first_name: Andrew
full_name: Leigh Brown, Andrew
last_name: Leigh Brown
citation:
ama: Ward M, Lycett S, Avila D, Bollback JP, Leigh Brown A. Evolutionary interactions
between haemagglutinin and neuraminidase in avian influenza. BMC Evolutionary
Biology. 2013;13(1). doi:10.1186/1471-2148-13-222
apa: Ward, M., Lycett, S., Avila, D., Bollback, J. P., & Leigh Brown, A. (2013).
Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza.
BMC Evolutionary Biology. BioMed Central. https://doi.org/10.1186/1471-2148-13-222
chicago: Ward, Melissa, Samantha Lycett, Dorita Avila, Jonathan P Bollback, and
Andrew Leigh Brown. “Evolutionary Interactions between Haemagglutinin and Neuraminidase
in Avian Influenza.” BMC Evolutionary Biology. BioMed Central, 2013. https://doi.org/10.1186/1471-2148-13-222.
ieee: M. Ward, S. Lycett, D. Avila, J. P. Bollback, and A. Leigh Brown, “Evolutionary
interactions between haemagglutinin and neuraminidase in avian influenza,” BMC
Evolutionary Biology, vol. 13, no. 1. BioMed Central, 2013.
ista: Ward M, Lycett S, Avila D, Bollback JP, Leigh Brown A. 2013. Evolutionary
interactions between haemagglutinin and neuraminidase in avian influenza. BMC
Evolutionary Biology. 13(1), 222.
mla: Ward, Melissa, et al. “Evolutionary Interactions between Haemagglutinin and
Neuraminidase in Avian Influenza.” BMC Evolutionary Biology, vol. 13, no.
1, 222, BioMed Central, 2013, doi:10.1186/1471-2148-13-222.
short: M. Ward, S. Lycett, D. Avila, J.P. Bollback, A. Leigh Brown, BMC Evolutionary
Biology 13 (2013).
date_created: 2018-12-11T11:46:49Z
date_published: 2013-10-09T00:00:00Z
date_updated: 2021-01-12T08:01:08Z
day: '09'
ddc:
- '576'
department:
- _id: JoBo
doi: 10.1186/1471-2148-13-222
file:
- access_level: open_access
checksum: 52cf48a7c1794676ae8b0029573a84a9
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:08:59Z
date_updated: 2020-07-14T12:46:36Z
file_id: '4722'
file_name: IST-2018-941-v1+1_2013_Bollback_Evolutionary_interactionspdf.pdf
file_size: 1150052
relation: main_file
file_date_updated: 2020-07-14T12:46:36Z
has_accepted_license: '1'
intvolume: ' 13'
issue: '1'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
publication: BMC Evolutionary Biology
publication_status: published
publisher: BioMed Central
publist_id: '7320'
pubrep_id: '941'
quality_controlled: '1'
scopus_import: 1
status: public
title: Evolutionary interactions between haemagglutinin and neuraminidase in avian
influenza
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2013'
...
---
_id: '501'
abstract:
- lang: eng
text: 'All known species of extant tapirs are allopatric: 1 in southeastern Asia
and 3 in Central and South America. The fossil record for tapirs, however, is
much wider in geographical range, including Europe, Asia, and North and South
America, going back to the late Oligocene, making the present distribution a relict
of the original one. We here describe a new species of living Tapirus from the
Amazon rain forest, the 1st since T. bairdii Gill, 1865, and the 1st new Perissodactyla
in more than 100 years, from both morphological and molecular characters. It is
shorter in stature than T. terrestris (Linnaeus, 1758) and has distinctive skull
morphology, and it is basal to the clade formed by T. terrestris and T. pinchaque
(Roulin, 1829). This highlights the unrecognized biodiversity in western Amazonia,
where the biota faces increasing threats. Local peoples have long recognized our
new species, suggesting a key role for traditional knowledge in understanding
the biodiversity of the region.'
author:
- first_name: Mario
full_name: Cozzuol, Mario
last_name: Cozzuol
- first_name: Camila
full_name: Clozato, Camila
last_name: Clozato
- first_name: Elizete
full_name: Holanda, Elizete
last_name: Holanda
- first_name: Flávio
full_name: Rodrigues, Flávio
last_name: Rodrigues
- first_name: Samuel
full_name: Nienow, Samuel
last_name: Nienow
- first_name: Benoit
full_name: De Thoisy, Benoit
last_name: De Thoisy
- first_name: Rodrigo A
full_name: Fernandes Redondo, Rodrigo A
id: 409D5C96-F248-11E8-B48F-1D18A9856A87
last_name: Fernandes Redondo
orcid: 0000-0002-5837-2793
- first_name: Fabrício
full_name: Santos, Fabrício
last_name: Santos
citation:
ama: Cozzuol M, Clozato C, Holanda E, et al. A new species of tapir from the Amazon.
Journal of Mammalogy. 2013;94(6):1331-1345. doi:10.1644/12-MAMM-A-169.1
apa: Cozzuol, M., Clozato, C., Holanda, E., Rodrigues, F., Nienow, S., De Thoisy,
B., … Santos, F. (2013). A new species of tapir from the Amazon. Journal of
Mammalogy. Oxford University Press. https://doi.org/10.1644/12-MAMM-A-169.1
chicago: Cozzuol, Mario, Camila Clozato, Elizete Holanda, Flávio Rodrigues, Samuel
Nienow, Benoit De Thoisy, Rodrigo A Fernandes Redondo, and Fabrício Santos. “A
New Species of Tapir from the Amazon.” Journal of Mammalogy. Oxford University
Press, 2013. https://doi.org/10.1644/12-MAMM-A-169.1.
ieee: M. Cozzuol et al., “A new species of tapir from the Amazon,” Journal
of Mammalogy, vol. 94, no. 6. Oxford University Press, pp. 1331–1345, 2013.
ista: Cozzuol M, Clozato C, Holanda E, Rodrigues F, Nienow S, De Thoisy B, Fernandes
Redondo RA, Santos F. 2013. A new species of tapir from the Amazon. Journal of
Mammalogy. 94(6), 1331–1345.
mla: Cozzuol, Mario, et al. “A New Species of Tapir from the Amazon.” Journal
of Mammalogy, vol. 94, no. 6, Oxford University Press, 2013, pp. 1331–45,
doi:10.1644/12-MAMM-A-169.1.
short: M. Cozzuol, C. Clozato, E. Holanda, F. Rodrigues, S. Nienow, B. De Thoisy,
R.A. Fernandes Redondo, F. Santos, Journal of Mammalogy 94 (2013) 1331–1345.
date_created: 2018-12-11T11:46:49Z
date_published: 2013-12-01T00:00:00Z
date_updated: 2021-01-12T08:01:09Z
day: '01'
ddc:
- '570'
department:
- _id: JoBo
doi: 10.1644/12-MAMM-A-169.1
file:
- access_level: open_access
checksum: 8007815078dccac21ecd1cf73a269dc6
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:12:59Z
date_updated: 2020-07-14T12:46:36Z
file_id: '4980'
file_name: IST-2018-940-v1+1_2013_Redondo_A_new.pdf
file_size: 1040765
relation: main_file
file_date_updated: 2020-07-14T12:46:36Z
has_accepted_license: '1'
intvolume: ' 94'
issue: '6'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '12'
oa: 1
oa_version: Published Version
page: 1331 - 1345
publication: Journal of Mammalogy
publication_status: published
publisher: Oxford University Press
publist_id: '7319'
pubrep_id: '940'
quality_controlled: '1'
scopus_import: 1
status: public
title: A new species of tapir from the Amazon
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 94
year: '2013'
...
---
_id: '507'
abstract:
- lang: eng
text: Fertilization in flowering plants requires the temporal and spatial coordination
of many developmental processes, including pollen production, anther dehiscence,
ovule production, and pollen tube elongation. However, it remains elusive as to
how this coordination occurs during reproduction. Here, we present evidence that
endocytosis, involving heterotetrameric adaptor protein complex 2 (AP-2), plays
a crucial role in fertilization. An Arabidopsis thaliana mutant ap2m displays
multiple defects in pollen production and viability, as well as elongation of
staminal filaments and pollen tubes, all of which are pivotal processes needed
for fertilization. Of these abnormalities, the defects in elongation of staminal
filaments and pollen tubes were partially rescued by exogenous auxin. Moreover,
DR5rev:GFP (for green fluorescent protein) expression was greatly reduced in filaments
and anthers in ap2m mutant plants. At the cellular level, ap2m mutants displayed
defects in both endocytosis of N-(3-triethylammonium-propyl)-4- (4-diethylaminophenylhexatrienyl)
pyridinium dibromide, a lypophilic dye used as an endocytosis marker, and polar
localization of auxin-efflux carrier PIN FORMED2 (PIN2) in the stamen filaments.
Moreover, these defects were phenocopied by treatment with Tyrphostin A23, an
inhibitor of endocytosis. Based on these results, we propose that AP-2-dependent
endocytosis plays a crucial role in coordinating the multiple developmental aspects
of male reproductive organs by modulating cellular auxin level through the regulation
of the amount and polarity of PINs.
author:
- first_name: Soo
full_name: Kim, Soo
last_name: Kim
- first_name: Zheng
full_name: Xu, Zheng
last_name: Xu
- first_name: Kyungyoung
full_name: Song, Kyungyoung
last_name: Song
- first_name: Dae
full_name: Kim, Dae
last_name: Kim
- first_name: Hyangju
full_name: Kang, Hyangju
last_name: Kang
- first_name: Ilka
full_name: Reichardt, Ilka
last_name: Reichardt
- first_name: Eun
full_name: Sohn, Eun
last_name: Sohn
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Gerd
full_name: Juergens, Gerd
last_name: Juergens
- first_name: Inhwan
full_name: Hwang, Inhwan
last_name: Hwang
citation:
ama: Kim S, Xu Z, Song K, et al. Adaptor protein complex 2-mediated endocytosis
is crucial for male reproductive organ development in arabidopsis. Plant Cell.
2013;25(8):2970-2985. doi:10.1105/tpc.113.114264
apa: Kim, S., Xu, Z., Song, K., Kim, D., Kang, H., Reichardt, I., … Hwang, I. (2013).
Adaptor protein complex 2-mediated endocytosis is crucial for male reproductive
organ development in arabidopsis. Plant Cell. American Society of Plant
Biologists. https://doi.org/10.1105/tpc.113.114264
chicago: Kim, Soo, Zheng Xu, Kyungyoung Song, Dae Kim, Hyangju Kang, Ilka Reichardt,
Eun Sohn, Jiří Friml, Gerd Juergens, and Inhwan Hwang. “Adaptor Protein Complex
2-Mediated Endocytosis Is Crucial for Male Reproductive Organ Development in Arabidopsis.”
Plant Cell. American Society of Plant Biologists, 2013. https://doi.org/10.1105/tpc.113.114264.
ieee: S. Kim et al., “Adaptor protein complex 2-mediated endocytosis is crucial
for male reproductive organ development in arabidopsis,” Plant Cell, vol.
25, no. 8. American Society of Plant Biologists, pp. 2970–2985, 2013.
ista: Kim S, Xu Z, Song K, Kim D, Kang H, Reichardt I, Sohn E, Friml J, Juergens
G, Hwang I. 2013. Adaptor protein complex 2-mediated endocytosis is crucial for
male reproductive organ development in arabidopsis. Plant Cell. 25(8), 2970–2985.
mla: Kim, Soo, et al. “Adaptor Protein Complex 2-Mediated Endocytosis Is Crucial
for Male Reproductive Organ Development in Arabidopsis.” Plant Cell, vol.
25, no. 8, American Society of Plant Biologists, 2013, pp. 2970–85, doi:10.1105/tpc.113.114264.
short: S. Kim, Z. Xu, K. Song, D. Kim, H. Kang, I. Reichardt, E. Sohn, J. Friml,
G. Juergens, I. Hwang, Plant Cell 25 (2013) 2970–2985.
date_created: 2018-12-11T11:46:52Z
date_published: 2013-08-01T00:00:00Z
date_updated: 2021-01-12T08:01:12Z
day: '01'
department:
- _id: JiFr
doi: 10.1105/tpc.113.114264
external_id:
pmid:
- '23975898'
intvolume: ' 25'
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3784592/
month: '08'
oa: 1
oa_version: Submitted Version
page: 2970 - 2985
pmid: 1
publication: Plant Cell
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '7312'
quality_controlled: '1'
scopus_import: 1
status: public
title: Adaptor protein complex 2-mediated endocytosis is crucial for male reproductive
organ development in arabidopsis
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2013'
...