---
_id: '2264'
abstract:
- lang: eng
  text: Faithful progression through the cell cycle is crucial to the maintenance
    and developmental potential of stem cells. Here, we demonstrate that neural stem
    cells (NSCs) and intermediate neural progenitor cells (NPCs) employ a zinc-finger
    transcription factor specificity protein 2 (Sp2) as a cell cycle regulator in
    two temporally and spatially distinct progenitor domains. Differential conditional
    deletion of Sp2 in early embryonic cerebral cortical progenitors, and perinatal
    olfactory bulb progenitors disrupted transitions through G1, G2 and M phases,
    whereas DNA synthesis appeared intact. Cell-autonomous function of Sp2 was identified
    by deletion of Sp2 using mosaic analysis with double markers, which clearly established
    that conditional Sp2-null NSCs and NPCs are M phase arrested in vivo. Importantly,
    conditional deletion of Sp2 led to a decline in the generation of NPCs and neurons
    in the developing and postnatal brains. Our findings implicate Sp2-dependent mechanisms
    as novel regulators of cell cycle progression, the absence of which disrupts neurogenesis
    in the embryonic and postnatal brain.
article_processing_charge: No
author:
- first_name: Huixuan
  full_name: Liang, Huixuan
  last_name: Liang
- first_name: Guanxi
  full_name: Xiao, Guanxi
  last_name: Xiao
- first_name: Haifeng
  full_name: Yin, Haifeng
  last_name: Yin
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
- first_name: Jonathan
  full_name: Horowitz, Jonathan
  last_name: Horowitz
- first_name: Troy
  full_name: Ghashghaei, Troy
  last_name: Ghashghaei
citation:
  ama: Liang H, Xiao G, Yin H, Hippenmeyer S, Horowitz J, Ghashghaei T. Neural development
    is dependent on the function of specificity protein 2 in cell cycle progression.
    <i>Development</i>. 2013;140(3):552-561. doi:<a href="https://doi.org/10.1242/dev.085621">10.1242/dev.085621</a>
  apa: Liang, H., Xiao, G., Yin, H., Hippenmeyer, S., Horowitz, J., &#38; Ghashghaei,
    T. (2013). Neural development is dependent on the function of specificity protein
    2 in cell cycle progression. <i>Development</i>. Company of Biologists. <a href="https://doi.org/10.1242/dev.085621">https://doi.org/10.1242/dev.085621</a>
  chicago: Liang, Huixuan, Guanxi Xiao, Haifeng Yin, Simon Hippenmeyer, Jonathan Horowitz,
    and Troy Ghashghaei. “Neural Development Is Dependent on the Function of Specificity
    Protein 2 in Cell Cycle Progression.” <i>Development</i>. Company of Biologists,
    2013. <a href="https://doi.org/10.1242/dev.085621">https://doi.org/10.1242/dev.085621</a>.
  ieee: H. Liang, G. Xiao, H. Yin, S. Hippenmeyer, J. Horowitz, and T. Ghashghaei,
    “Neural development is dependent on the function of specificity protein 2 in cell
    cycle progression,” <i>Development</i>, vol. 140, no. 3. Company of Biologists,
    pp. 552–561, 2013.
  ista: Liang H, Xiao G, Yin H, Hippenmeyer S, Horowitz J, Ghashghaei T. 2013. Neural
    development is dependent on the function of specificity protein 2 in cell cycle
    progression. Development. 140(3), 552–561.
  mla: Liang, Huixuan, et al. “Neural Development Is Dependent on the Function of
    Specificity Protein 2 in Cell Cycle Progression.” <i>Development</i>, vol. 140,
    no. 3, Company of Biologists, 2013, pp. 552–61, doi:<a href="https://doi.org/10.1242/dev.085621">10.1242/dev.085621</a>.
  short: H. Liang, G. Xiao, H. Yin, S. Hippenmeyer, J. Horowitz, T. Ghashghaei, Development
    140 (2013) 552–561.
date_created: 2018-12-11T11:56:39Z
date_published: 2013-02-01T00:00:00Z
date_updated: 2021-01-12T06:56:23Z
day: '01'
department:
- _id: SiHi
doi: 10.1242/dev.085621
external_id:
  pmid:
  - '23293287'
intvolume: '       140'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3561788/
month: '02'
oa: 1
oa_version: Submitted Version
page: 552 - 561
pmid: 1
publication: Development
publication_status: published
publisher: Company of Biologists
publist_id: '4681'
quality_controlled: '1'
scopus_import: 1
status: public
title: Neural development is dependent on the function of specificity protein 2 in
  cell cycle progression
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 140
year: '2013'
...
---
_id: '2270'
abstract:
- lang: eng
  text: "Representation languages for coalitional games are a key research area in
    algorithmic game theory.   There is an inher-\r\nent tradeoff between how general
    a language is, allowing it to  capture  more  elaborate  games,  and  how  hard
    \ it  is  computationally to optimize and solve such games.  One prominent  such
    \ language  is  the  simple  yet  expressive\r\nWeighted Graph Games  (WGGs) representation
    (Deng  and Papadimitriou 1994), which maintains knowledge about synergies between
    agents in the form of an edge weighted graph. We  consider  the  problem  of  finding
    \ the  optimal  coalition structure in WGGs. The agents in such games are vertices
    in a graph, and the value of a coalition is the sum of the weights of the edges
    present between coalition members. The optimal coalition structure is a partition
    of the agents to coalitions, that maximizes the sum of utilities obtained by the
    coalitions. We  show  that  finding  the  optimal  coalition  structure  is  not
    only hard for general graphs,  but is also intractable for restricted families
    such as planar graphs which are amenable for many other combinatorial problems.
    \ We then provide algorithms with constant factor approximations for planar, minorfree
    and bounded degree graphs."
arxiv: 1
author:
- first_name: Yoram
  full_name: Bachrach, Yoram
  last_name: Bachrach
- first_name: Pushmeet
  full_name: Kohli, Pushmeet
  last_name: Kohli
- first_name: Vladimir
  full_name: Kolmogorov, Vladimir
  id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kolmogorov
- first_name: Morteza
  full_name: Zadimoghaddam, Morteza
  last_name: Zadimoghaddam
citation:
  ama: 'Bachrach Y, Kohli P, Kolmogorov V, Zadimoghaddam M. Optimal Coalition Structures
    in Cooperative Graph Games. In: AAAI Press; 2013:81-87.'
  apa: 'Bachrach, Y., Kohli, P., Kolmogorov, V., &#38; Zadimoghaddam, M. (2013). Optimal
    Coalition Structures in Cooperative Graph Games (pp. 81–87). Presented at the
    AAAI: Conference on Artificial Intelligence, Bellevue, WA, United States: AAAI
    Press.'
  chicago: Bachrach, Yoram, Pushmeet Kohli, Vladimir Kolmogorov, and Morteza Zadimoghaddam.
    “Optimal Coalition Structures in Cooperative Graph Games,” 81–87. AAAI Press,
    2013.
  ieee: 'Y. Bachrach, P. Kohli, V. Kolmogorov, and M. Zadimoghaddam, “Optimal Coalition
    Structures in Cooperative Graph Games,” presented at the AAAI: Conference on Artificial
    Intelligence, Bellevue, WA, United States, 2013, pp. 81–87.'
  ista: 'Bachrach Y, Kohli P, Kolmogorov V, Zadimoghaddam M. 2013. Optimal Coalition
    Structures in Cooperative Graph Games. AAAI: Conference on Artificial Intelligence,
    81–87.'
  mla: Bachrach, Yoram, et al. <i>Optimal Coalition Structures in Cooperative Graph
    Games</i>. AAAI Press, 2013, pp. 81–87.
  short: Y. Bachrach, P. Kohli, V. Kolmogorov, M. Zadimoghaddam, in:, AAAI Press,
    2013, pp. 81–87.
conference:
  end_date: 2013-07-18
  location: Bellevue, WA, United States
  name: 'AAAI: Conference on Artificial Intelligence'
  start_date: 2013-07-14
date_created: 2018-12-11T11:56:41Z
date_published: 2013-12-31T00:00:00Z
date_updated: 2021-01-12T06:56:25Z
day: '31'
department:
- _id: VlKo
external_id:
  arxiv:
  - '1108.5248'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1108.5248
month: '12'
oa: 1
oa_version: None
page: 81-87
publication_status: published
publisher: AAAI Press
publist_id: '4674'
quality_controlled: '1'
status: public
title: Optimal Coalition Structures in Cooperative Graph Games
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2272'
abstract:
- lang: eng
  text: "We consider Conditional Random Fields (CRFs) with pattern-based potentials
    defined on a chain. In this model the energy of a string (labeling) x1...xn is
    the sum of terms over intervals [i,j] where each term is non-zero only if the
    substring xi...xj equals a prespecified pattern α. Such CRFs can be naturally
    applied to many sequence tagging problems.\r\nWe present efficient algorithms
    for the three standard inference tasks in a CRF, namely computing (i) the partition
    function, (ii) marginals, and (iii) computing the MAP. Their complexities are
    respectively O(nL), O(nLℓmax) and O(nLmin{|D|,log(ℓmax+1)}) where L is the combined
    length of input patterns, ℓmax is the maximum length of a pattern, and D is the
    input alphabet. This improves on the previous algorithms of (Ye et al., 2009)
    whose complexities are respectively O(nL|D|), O(n|Γ|L2ℓ2max) and O(nL|D|), where
    |Γ| is the number of input patterns.\r\nIn addition, we give an efficient algorithm
    for sampling. Finally, we consider the case of non-positive weights. (Komodakis
    &amp; Paragios, 2009) gave an O(nL) algorithm for computing the MAP. We present
    a modification that has the same worst-case complexity but can beat it in the
    best case. "
alternative_title:
- JMLR
article_processing_charge: No
author:
- first_name: Rustem
  full_name: Takhanov, Rustem
  id: 2CCAC26C-F248-11E8-B48F-1D18A9856A87
  last_name: Takhanov
- first_name: Vladimir
  full_name: Kolmogorov, Vladimir
  id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kolmogorov
citation:
  ama: 'Takhanov R, Kolmogorov V. Inference algorithms for pattern-based CRFs on sequence
    data. In: <i>ICML’13 Proceedings of the 30th International Conference on International</i>.
    Vol 28. ML Research Press; 2013:145-153.'
  apa: 'Takhanov, R., &#38; Kolmogorov, V. (2013). Inference algorithms for pattern-based
    CRFs on sequence data. In <i>ICML’13 Proceedings of the 30th International Conference
    on International</i> (Vol. 28, pp. 145–153). Atlanta, GA, USA: ML Research Press.'
  chicago: Takhanov, Rustem, and Vladimir Kolmogorov. “Inference Algorithms for Pattern-Based
    CRFs on Sequence Data.” In <i>ICML’13 Proceedings of the 30th International Conference
    on International</i>, 28:145–53. ML Research Press, 2013.
  ieee: R. Takhanov and V. Kolmogorov, “Inference algorithms for pattern-based CRFs
    on sequence data,” in <i>ICML’13 Proceedings of the 30th International Conference
    on International</i>, Atlanta, GA, USA, 2013, vol. 28, no. 3, pp. 145–153.
  ista: 'Takhanov R, Kolmogorov V. 2013. Inference algorithms for pattern-based CRFs
    on sequence data. ICML’13 Proceedings of the 30th International Conference on
    International. ICML: International Conference on Machine Learning, JMLR, vol.
    28, 145–153.'
  mla: Takhanov, Rustem, and Vladimir Kolmogorov. “Inference Algorithms for Pattern-Based
    CRFs on Sequence Data.” <i>ICML’13 Proceedings of the 30th International Conference
    on International</i>, vol. 28, no. 3, ML Research Press, 2013, pp. 145–53.
  short: R. Takhanov, V. Kolmogorov, in:, ICML’13 Proceedings of the 30th International
    Conference on International, ML Research Press, 2013, pp. 145–153.
conference:
  end_date: 2013-06-21
  location: Atlanta, GA, USA
  name: 'ICML: International Conference on Machine Learning'
  start_date: 2013-06-16
date_created: 2018-12-11T11:56:41Z
date_published: 2013-06-01T00:00:00Z
date_updated: 2023-10-17T09:51:32Z
day: '01'
department:
- _id: VlKo
intvolume: '        28'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://proceedings.mlr.press/v28/takhanov13.pdf?CFID=105472548&CFTOKEN=5c5859b5d97b4439-27B4AC58-BA92-A964-B598CAACEE6CC515
month: '06'
oa: 1
oa_version: Submitted Version
page: 145 - 153
publication: ICML'13 Proceedings of the 30th International Conference on International
publication_status: published
publisher: ML Research Press
publist_id: '4672'
quality_controlled: '1'
related_material:
  record:
  - id: '1794'
    relation: later_version
    status: public
scopus_import: '1'
status: public
title: Inference algorithms for pattern-based CRFs on sequence data
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 28
year: '2013'
...
---
_id: '2273'
abstract:
- lang: eng
  text: We propose a new family of message passing techniques for MAP estimation in
    graphical models which we call Sequential Reweighted Message Passing (SRMP). Special
    cases include well-known techniques such as Min-Sum Diusion (MSD) and a faster
    Sequential Tree-Reweighted Message Passing (TRW-S). Importantly, our derivation
    is simpler than the original derivation of TRW-S, and does not involve a  decomposition
    into trees. This allows easy generalizations. We present such a generalization
    for the case of higher-order graphical models, and test it on several real-world
    problems with promising results.
author:
- first_name: Vladimir
  full_name: Vladimir Kolmogorov
  id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kolmogorov
citation:
  ama: Kolmogorov V. <i>Reweighted Message Passing Revisited</i>. IST Austria; 2013.
  apa: Kolmogorov, V. (2013). <i>Reweighted message passing revisited</i>. IST Austria.
  chicago: Kolmogorov, Vladimir. <i>Reweighted Message Passing Revisited</i>. IST
    Austria, 2013.
  ieee: V. Kolmogorov, <i>Reweighted message passing revisited</i>. IST Austria, 2013.
  ista: Kolmogorov V. 2013. Reweighted message passing revisited, IST Austria,p.
  mla: Kolmogorov, Vladimir. <i>Reweighted Message Passing Revisited</i>. IST Austria,
    2013.
  short: V. Kolmogorov, Reweighted Message Passing Revisited, IST Austria, 2013.
date_created: 2018-12-11T11:56:42Z
date_published: 2013-09-22T00:00:00Z
date_updated: 2019-01-24T13:07:32Z
day: '22'
department:
- _id: VlKo
extern: 0
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1309.5655
month: '09'
oa: 1
publication_status: published
publisher: IST Austria
publist_id: '4671'
quality_controlled: 0
status: public
title: Reweighted message passing revisited
type: report
year: '2013'
...
---
_id: '2274'
abstract:
- lang: eng
  text: "Proofs of work (PoW) have been suggested by Dwork and Naor (Crypto'92) as
    protection to a shared resource. The basic idea is to ask the service requestor
    to dedicate some non-trivial amount of computational work to every request. The
    original applications included prevention of spam and protection against denial
    of service attacks. More recently, PoWs have been used to prevent double spending
    in the Bitcoin digital currency system.\r\n\r\nIn this work, we put forward an
    alternative concept for PoWs -- so-called proofs of space (PoS), where a service
    requestor must dedicate a significant amount of disk space as opposed to computation.
    We construct secure PoS schemes in the random oracle model, using graphs with
    high &quot;pebbling complexity&quot; and Merkle hash-trees. "
author:
- first_name: Stefan
  full_name: Dziembowski, Stefan
  last_name: Dziembowski
- first_name: Sebastian
  full_name: Faust, Sebastian
  last_name: Faust
- first_name: Vladimir
  full_name: Kolmogorov, Vladimir
  id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kolmogorov
- first_name: Krzysztof Z
  full_name: Pietrzak, Krzysztof Z
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
citation:
  ama: Dziembowski S, Faust S, Kolmogorov V, Pietrzak KZ. <i>Proofs of Space</i>.
    IST Austria; 2013.
  apa: Dziembowski, S., Faust, S., Kolmogorov, V., &#38; Pietrzak, K. Z. (2013). <i>Proofs
    of Space</i>. IST Austria.
  chicago: Dziembowski, Stefan, Sebastian Faust, Vladimir Kolmogorov, and Krzysztof
    Z Pietrzak. <i>Proofs of Space</i>. IST Austria, 2013.
  ieee: S. Dziembowski, S. Faust, V. Kolmogorov, and K. Z. Pietrzak, <i>Proofs of
    Space</i>. IST Austria, 2013.
  ista: Dziembowski S, Faust S, Kolmogorov V, Pietrzak KZ. 2013. Proofs of Space,
    IST Austria,p.
  mla: Dziembowski, Stefan, et al. <i>Proofs of Space</i>. IST Austria, 2013.
  short: S. Dziembowski, S. Faust, V. Kolmogorov, K.Z. Pietrzak, Proofs of Space,
    IST Austria, 2013.
date_created: 2018-12-11T11:56:42Z
date_published: 2013-11-28T00:00:00Z
date_updated: 2023-02-23T10:09:33Z
day: '28'
ddc:
- '530'
department:
- _id: VlKo
- _id: KrPi
file:
- access_level: open_access
  checksum: 37b61637b62fc079d9141c59d9f1a94f
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:16:11Z
  date_updated: 2020-07-14T12:45:36Z
  file_id: '5197'
  file_name: IST-2016-671-v1+1_796.pdf
  file_size: 405870
  relation: main_file
file_date_updated: 2020-07-14T12:45:36Z
has_accepted_license: '1'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
publication_status: published
publisher: IST Austria
publist_id: '4670'
pubrep_id: '671'
related_material:
  record:
  - id: '1675'
    relation: later_version
    status: public
scopus_import: 1
status: public
title: Proofs of Space
type: report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2276'
abstract:
- lang: eng
  text: The problem of minimizing the Potts energy function frequently occurs in computer
    vision applications. One way to tackle this NP-hard problem was proposed by Kovtun
    [19, 20]. It identifies a part of an optimal solution by running k maxflow computations,
    where k is the number of labels. The number of “labeled” pixels can be significant
    in some applications, e.g. 50-93% in our tests for stereo. We show how to reduce
    the runtime to O (log k) maxflow computations (or one parametric maxflow computation).
    Furthermore, the output of our algorithm allows to speed-up the subsequent alpha
    expansion for the unlabeled part, or can be used as it is for time-critical applications.
    To derive our technique, we generalize the algorithm of Felzenszwalb et al. [7]
    for Tree Metrics . We also show a connection to k-submodular functions from combinatorial
    optimization, and discuss k-submodular relaxations for general energy functions.
arxiv: 1
author:
- first_name: Igor
  full_name: Gridchyn, Igor
  id: 4B60654C-F248-11E8-B48F-1D18A9856A87
  last_name: Gridchyn
- first_name: Vladimir
  full_name: Kolmogorov, Vladimir
  id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kolmogorov
citation:
  ama: 'Gridchyn I, Kolmogorov V. Potts model, parametric maxflow and k-submodular
    functions. In: IEEE; 2013:2320-2327. doi:<a href="https://doi.org/10.1109/ICCV.2013.288">10.1109/ICCV.2013.288</a>'
  apa: 'Gridchyn, I., &#38; Kolmogorov, V. (2013). Potts model, parametric maxflow
    and k-submodular functions (pp. 2320–2327). Presented at the ICCV: International
    Conference on Computer Vision, Sydney, Australia: IEEE. <a href="https://doi.org/10.1109/ICCV.2013.288">https://doi.org/10.1109/ICCV.2013.288</a>'
  chicago: Gridchyn, Igor, and Vladimir Kolmogorov. “Potts Model, Parametric Maxflow
    and k-Submodular Functions,” 2320–27. IEEE, 2013. <a href="https://doi.org/10.1109/ICCV.2013.288">https://doi.org/10.1109/ICCV.2013.288</a>.
  ieee: 'I. Gridchyn and V. Kolmogorov, “Potts model, parametric maxflow and k-submodular
    functions,” presented at the ICCV: International Conference on Computer Vision,
    Sydney, Australia, 2013, pp. 2320–2327.'
  ista: 'Gridchyn I, Kolmogorov V. 2013. Potts model, parametric maxflow and k-submodular
    functions. ICCV: International Conference on Computer Vision, 2320–2327.'
  mla: Gridchyn, Igor, and Vladimir Kolmogorov. <i>Potts Model, Parametric Maxflow
    and k-Submodular Functions</i>. IEEE, 2013, pp. 2320–27, doi:<a href="https://doi.org/10.1109/ICCV.2013.288">10.1109/ICCV.2013.288</a>.
  short: I. Gridchyn, V. Kolmogorov, in:, IEEE, 2013, pp. 2320–2327.
conference:
  end_date: 2013-12-08
  location: Sydney, Australia
  name: 'ICCV: International Conference on Computer Vision'
  start_date: 2013-12-01
date_created: 2018-12-11T11:56:43Z
date_published: 2013-12-01T00:00:00Z
date_updated: 2021-01-12T06:56:28Z
day: '01'
department:
- _id: JoCs
- _id: VlKo
doi: 10.1109/ICCV.2013.288
external_id:
  arxiv:
  - '1310.1771'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1310.1771
month: '12'
oa: 1
oa_version: Preprint
page: 2320 - 2327
publication_status: published
publisher: IEEE
publist_id: '4668'
quality_controlled: '1'
status: public
title: Potts model, parametric maxflow and k-submodular functions
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2277'
abstract:
- lang: eng
  text: Redundancies and correlations in the responses of sensory neurons may seem
    to waste neural resources, but they can also carry cues about structured stimuli
    and may help the brain to correct for response errors. To investigate the effect
    of stimulus structure on redundancy in retina, we measured simultaneous responses
    from populations of retinal ganglion cells presented with natural and artificial
    stimuli that varied greatly in correlation structure; these stimuli and recordings
    are publicly available online. Responding to spatio-temporally structured stimuli
    such as natural movies, pairs of ganglion cells were modestly more correlated
    than in response to white noise checkerboards, but they were much less correlated
    than predicted by a non-adapting functional model of retinal response. Meanwhile,
    responding to stimuli with purely spatial correlations, pairs of ganglion cells
    showed increased correlations consistent with a static, non-adapting receptive
    field and nonlinearity. We found that in response to spatio-temporally correlated
    stimuli, ganglion cells had faster temporal kernels and tended to have stronger
    surrounds. These properties of individual cells, along with gain changes that
    opposed changes in effective contrast at the ganglion cell input, largely explained
    the pattern of pairwise correlations across stimuli where receptive field measurements
    were possible.
article_number: e1003344
author:
- first_name: Kristina
  full_name: Simmons, Kristina
  last_name: Simmons
- first_name: Jason
  full_name: Prentice, Jason
  last_name: Prentice
- first_name: Gasper
  full_name: Tkacik, Gasper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkacik
  orcid: 0000-0002-6699-1455
- first_name: Jan
  full_name: Homann, Jan
  last_name: Homann
- first_name: Heather
  full_name: Yee, Heather
  last_name: Yee
- first_name: Stephanie
  full_name: Palmer, Stephanie
  last_name: Palmer
- first_name: Philip
  full_name: Nelson, Philip
  last_name: Nelson
- first_name: Vijay
  full_name: Balasubramanian, Vijay
  last_name: Balasubramanian
citation:
  ama: Simmons K, Prentice J, Tkačik G, et al. Transformation of stimulus correlations
    by the retina. <i>PLoS Computational Biology</i>. 2013;9(12). doi:<a href="https://doi.org/10.1371/journal.pcbi.1003344">10.1371/journal.pcbi.1003344</a>
  apa: Simmons, K., Prentice, J., Tkačik, G., Homann, J., Yee, H., Palmer, S., … Balasubramanian,
    V. (2013). Transformation of stimulus correlations by the retina. <i>PLoS Computational
    Biology</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pcbi.1003344">https://doi.org/10.1371/journal.pcbi.1003344</a>
  chicago: Simmons, Kristina, Jason Prentice, Gašper Tkačik, Jan Homann, Heather Yee,
    Stephanie Palmer, Philip Nelson, and Vijay Balasubramanian. “Transformation of
    Stimulus Correlations by the Retina.” <i>PLoS Computational Biology</i>. Public
    Library of Science, 2013. <a href="https://doi.org/10.1371/journal.pcbi.1003344">https://doi.org/10.1371/journal.pcbi.1003344</a>.
  ieee: K. Simmons <i>et al.</i>, “Transformation of stimulus correlations by the
    retina,” <i>PLoS Computational Biology</i>, vol. 9, no. 12. Public Library of
    Science, 2013.
  ista: Simmons K, Prentice J, Tkačik G, Homann J, Yee H, Palmer S, Nelson P, Balasubramanian
    V. 2013. Transformation of stimulus correlations by the retina. PLoS Computational
    Biology. 9(12), e1003344.
  mla: Simmons, Kristina, et al. “Transformation of Stimulus Correlations by the Retina.”
    <i>PLoS Computational Biology</i>, vol. 9, no. 12, e1003344, Public Library of
    Science, 2013, doi:<a href="https://doi.org/10.1371/journal.pcbi.1003344">10.1371/journal.pcbi.1003344</a>.
  short: K. Simmons, J. Prentice, G. Tkačik, J. Homann, H. Yee, S. Palmer, P. Nelson,
    V. Balasubramanian, PLoS Computational Biology 9 (2013).
date_created: 2018-12-11T11:56:43Z
date_published: 2013-12-05T00:00:00Z
date_updated: 2023-02-23T14:07:04Z
day: '05'
ddc:
- '570'
department:
- _id: GaTk
doi: 10.1371/journal.pcbi.1003344
file:
- access_level: open_access
  checksum: 46722afc4f7eabb0831165d9c1b171ad
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:14:36Z
  date_updated: 2020-07-14T12:45:36Z
  file_id: '5089'
  file_name: IST-2016-410-v1+1_journal.pcbi.1003344.pdf
  file_size: 3115568
  relation: main_file
file_date_updated: 2020-07-14T12:45:36Z
has_accepted_license: '1'
intvolume: '         9'
issue: '12'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: PLoS Computational Biology
publication_status: published
publisher: Public Library of Science
publist_id: '4667'
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quality_controlled: '1'
related_material:
  record:
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    status: public
scopus_import: 1
status: public
title: Transformation of stimulus correlations by the retina
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2013'
...
---
_id: '2279'
abstract:
- lang: eng
  text: We consider two-player games played on weighted directed graphs with mean-payoff
    and total-payoff objectives, two classical quantitative objectives. While for
    single-dimensional games the complexity and memory bounds for both objectives
    coincide, we show that in contrast to multi-dimensional mean-payoff games that
    are known to be coNP-complete, multi-dimensional total-payoff games are undecidable.
    We introduce conservative approximations of these objectives, where the payoff
    is considered over a local finite window sliding along a play, instead of the
    whole play. For single dimension, we show that (i) if the window size is polynomial,
    deciding the winner takes polynomial time, and (ii) the existence of a bounded
    window can be decided in NP ∩ coNP, and is at least as hard as solving mean-payoff
    games. For multiple dimensions, we show that (i) the problem with fixed window
    size is EXPTIME-complete, and (ii) there is no primitive-recursive algorithm to
    decide the existence of a bounded window.
acknowledgement: 279307; ERC; Fonds National de la Reserche Luxembourg;  279499; ERC;
  Fonds National de la Reserche Luxembourg
alternative_title:
- LNCS
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Laurent
  full_name: Doyen, Laurent
  last_name: Doyen
- first_name: Mickael
  full_name: Randour, Mickael
  last_name: Randour
- first_name: Jean
  full_name: Raskin, Jean
  last_name: Raskin
citation:
  ama: Chatterjee K, Doyen L, Randour M, Raskin J. Looking at mean-payoff and total-payoff
    through windows. 2013;8172:118-132. doi:<a href="https://doi.org/10.1007/978-3-319-02444-8_10">10.1007/978-3-319-02444-8_10</a>
  apa: 'Chatterjee, K., Doyen, L., Randour, M., &#38; Raskin, J. (2013). Looking at
    mean-payoff and total-payoff through windows. Presented at the ATVA: Automated
    Technology for Verification and Analysis, Hanoi, Vietnam: Springer. <a href="https://doi.org/10.1007/978-3-319-02444-8_10">https://doi.org/10.1007/978-3-319-02444-8_10</a>'
  chicago: Chatterjee, Krishnendu, Laurent Doyen, Mickael Randour, and Jean Raskin.
    “Looking at Mean-Payoff and Total-Payoff through Windows.” Lecture Notes in Computer
    Science. Springer, 2013. <a href="https://doi.org/10.1007/978-3-319-02444-8_10">https://doi.org/10.1007/978-3-319-02444-8_10</a>.
  ieee: K. Chatterjee, L. Doyen, M. Randour, and J. Raskin, “Looking at mean-payoff
    and total-payoff through windows,” vol. 8172. Springer, pp. 118–132, 2013.
  ista: Chatterjee K, Doyen L, Randour M, Raskin J. 2013. Looking at mean-payoff and
    total-payoff through windows. 8172, 118–132.
  mla: Chatterjee, Krishnendu, et al. <i>Looking at Mean-Payoff and Total-Payoff through
    Windows</i>. Vol. 8172, Springer, 2013, pp. 118–32, doi:<a href="https://doi.org/10.1007/978-3-319-02444-8_10">10.1007/978-3-319-02444-8_10</a>.
  short: K. Chatterjee, L. Doyen, M. Randour, J. Raskin, 8172 (2013) 118–132.
conference:
  end_date: 2013-10-18
  location: Hanoi, Vietnam
  name: 'ATVA: Automated Technology for Verification and Analysis'
  start_date: 2013-10-15
date_created: 2018-12-11T11:56:44Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2023-02-23T12:22:51Z
day: '01'
department:
- _id: KrCh
doi: 10.1007/978-3-319-02444-8_10
ec_funded: 1
intvolume: '      8172'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1302.4248
month: '01'
oa: 1
oa_version: Preprint
page: 118 - 132
project:
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
publication_status: published
publisher: Springer
publist_id: '4656'
quality_controlled: '1'
related_material:
  record:
  - id: '523'
    relation: later_version
    status: public
scopus_import: 1
series_title: Lecture Notes in Computer Science
status: public
title: Looking at mean-payoff and total-payoff through windows
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8172
year: '2013'
...
---
_id: '2280'
abstract:
- lang: eng
  text: The problem of packing ellipsoids of different sizes and shapes into an ellipsoidal
    container so as to minimize a measure of overlap between ellipsoids is considered.
    A bilevel optimization formulation is given, together with an algorithm for the
    general case and a simpler algorithm for the special case in which all ellipsoids
    are in fact spheres. Convergence results are proved and computational experience
    is described and illustrated. The motivating application-chromosome organization
    in the human cell nucleus-is discussed briefly, and some illustrative results
    are presented.
arxiv: 1
author:
- first_name: Caroline
  full_name: Uhler, Caroline
  id: 49ADD78E-F248-11E8-B48F-1D18A9856A87
  last_name: Uhler
  orcid: 0000-0002-7008-0216
- first_name: Stephen
  full_name: Wright, Stephen
  last_name: Wright
citation:
  ama: Uhler C, Wright S. Packing ellipsoids with overlap. <i>SIAM Review</i>. 2013;55(4):671-706.
    doi:<a href="https://doi.org/10.1137/120872309">10.1137/120872309</a>
  apa: Uhler, C., &#38; Wright, S. (2013). Packing ellipsoids with overlap. <i>SIAM
    Review</i>. Society for Industrial and Applied Mathematics . <a href="https://doi.org/10.1137/120872309">https://doi.org/10.1137/120872309</a>
  chicago: Uhler, Caroline, and Stephen Wright. “Packing Ellipsoids with Overlap.”
    <i>SIAM Review</i>. Society for Industrial and Applied Mathematics , 2013. <a
    href="https://doi.org/10.1137/120872309">https://doi.org/10.1137/120872309</a>.
  ieee: C. Uhler and S. Wright, “Packing ellipsoids with overlap,” <i>SIAM Review</i>,
    vol. 55, no. 4. Society for Industrial and Applied Mathematics , pp. 671–706,
    2013.
  ista: Uhler C, Wright S. 2013. Packing ellipsoids with overlap. SIAM Review. 55(4),
    671–706.
  mla: Uhler, Caroline, and Stephen Wright. “Packing Ellipsoids with Overlap.” <i>SIAM
    Review</i>, vol. 55, no. 4, Society for Industrial and Applied Mathematics , 2013,
    pp. 671–706, doi:<a href="https://doi.org/10.1137/120872309">10.1137/120872309</a>.
  short: C. Uhler, S. Wright, SIAM Review 55 (2013) 671–706.
date_created: 2018-12-11T11:56:44Z
date_published: 2013-11-07T00:00:00Z
date_updated: 2021-01-12T06:56:30Z
day: '07'
department:
- _id: CaUh
doi: 10.1137/120872309
external_id:
  arxiv:
  - '1204.0235'
intvolume: '        55'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1204.0235
month: '11'
oa: 1
oa_version: Preprint
page: 671 - 706
publication: SIAM Review
publication_status: published
publisher: 'Society for Industrial and Applied Mathematics '
publist_id: '4655'
quality_controlled: '1'
scopus_import: 1
status: public
title: Packing ellipsoids with overlap
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 55
year: '2013'
...
---
_id: '2282'
abstract:
- lang: eng
  text: Epithelial spreading is a common and fundamental aspect of various developmental
    and disease-related processes such as epithelial closure and wound healing. A
    key challenge for epithelial tissues undergoing spreading is to increase their
    surface area without disrupting epithelial integrity. Here we show that orienting
    cell divisions by tension constitutes an efficient mechanism by which the enveloping
    cell layer (EVL) releases anisotropic tension while undergoing spreading during
    zebrafish epiboly. The control of EVL cell-division orientation by tension involves
    cell elongation and requires myosin II activity to align the mitotic spindle with
    the main tension axis. We also found that in the absence of tension-oriented cell
    divisions and in the presence of increased tissue tension, EVL cells undergo ectopic
    fusions, suggesting that the reduction of tension anisotropy by oriented cell
    divisions is required to prevent EVL cells from fusing. We conclude that cell-division
    orientation by tension constitutes a key mechanism for limiting tension anisotropy
    and thus promoting tissue spreading during EVL epiboly.
acknowledged_ssus:
- _id: PreCl
- _id: Bio
acknowledgement: 'This work was supported by the IST Austria and MPI-CBG '
author:
- first_name: Pedro
  full_name: Campinho, Pedro
  id: 3AFBBC42-F248-11E8-B48F-1D18A9856A87
  last_name: Campinho
  orcid: 0000-0002-8526-5416
- first_name: Martin
  full_name: Behrndt, Martin
  id: 3ECECA3A-F248-11E8-B48F-1D18A9856A87
  last_name: Behrndt
- first_name: Jonas
  full_name: Ranft, Jonas
  last_name: Ranft
- first_name: Thomas
  full_name: Risler, Thomas
  last_name: Risler
- first_name: Nicolas
  full_name: Minc, Nicolas
  last_name: Minc
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
citation:
  ama: Campinho P, Behrndt M, Ranft J, Risler T, Minc N, Heisenberg C-PJ. Tension-oriented
    cell divisions limit anisotropic tissue tension in epithelial spreading during
    zebrafish epiboly. <i>Nature Cell Biology</i>. 2013;15:1405-1414. doi:<a href="https://doi.org/10.1038/ncb2869">10.1038/ncb2869</a>
  apa: Campinho, P., Behrndt, M., Ranft, J., Risler, T., Minc, N., &#38; Heisenberg,
    C.-P. J. (2013). Tension-oriented cell divisions limit anisotropic tissue tension
    in epithelial spreading during zebrafish epiboly. <i>Nature Cell Biology</i>.
    Nature Publishing Group. <a href="https://doi.org/10.1038/ncb2869">https://doi.org/10.1038/ncb2869</a>
  chicago: Campinho, Pedro, Martin Behrndt, Jonas Ranft, Thomas Risler, Nicolas Minc,
    and Carl-Philipp J Heisenberg. “Tension-Oriented Cell Divisions Limit Anisotropic
    Tissue Tension in Epithelial Spreading during Zebrafish Epiboly.” <i>Nature Cell
    Biology</i>. Nature Publishing Group, 2013. <a href="https://doi.org/10.1038/ncb2869">https://doi.org/10.1038/ncb2869</a>.
  ieee: P. Campinho, M. Behrndt, J. Ranft, T. Risler, N. Minc, and C.-P. J. Heisenberg,
    “Tension-oriented cell divisions limit anisotropic tissue tension in epithelial
    spreading during zebrafish epiboly,” <i>Nature Cell Biology</i>, vol. 15. Nature
    Publishing Group, pp. 1405–1414, 2013.
  ista: Campinho P, Behrndt M, Ranft J, Risler T, Minc N, Heisenberg C-PJ. 2013. Tension-oriented
    cell divisions limit anisotropic tissue tension in epithelial spreading during
    zebrafish epiboly. Nature Cell Biology. 15, 1405–1414.
  mla: Campinho, Pedro, et al. “Tension-Oriented Cell Divisions Limit Anisotropic
    Tissue Tension in Epithelial Spreading during Zebrafish Epiboly.” <i>Nature Cell
    Biology</i>, vol. 15, Nature Publishing Group, 2013, pp. 1405–14, doi:<a href="https://doi.org/10.1038/ncb2869">10.1038/ncb2869</a>.
  short: P. Campinho, M. Behrndt, J. Ranft, T. Risler, N. Minc, C.-P.J. Heisenberg,
    Nature Cell Biology 15 (2013) 1405–1414.
date_created: 2018-12-11T11:56:45Z
date_published: 2013-11-10T00:00:00Z
date_updated: 2023-02-21T17:02:44Z
day: '10'
department:
- _id: CaHe
doi: 10.1038/ncb2869
intvolume: '        15'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://hal.upmc.fr/hal-00983313/
month: '11'
oa: 1
oa_version: Submitted Version
page: 1405 - 1414
project:
- _id: 252ABD0A-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I 930-B20
  name: Control of Epithelial Cell Layer Spreading in Zebrafish
publication: Nature Cell Biology
publication_status: published
publisher: Nature Publishing Group
publist_id: '4652'
quality_controlled: '1'
related_material:
  record:
  - id: '1403'
    relation: dissertation_contains
    status: public
scopus_import: 1
status: public
title: Tension-oriented cell divisions limit anisotropic tissue tension in epithelial
  spreading during zebrafish epiboly
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2013'
...
---
_id: '2284'
abstract:
- lang: eng
  text: 'Background: The brood of ants and other social insects is highly susceptible
    to pathogens, particularly those that penetrate the soft larval and pupal cuticle.
    We here test whether the presence of a pupal cocoon, which occurs in some ant
    species but not in others, affects the sanitary brood care and fungal infection
    patterns after exposure to the entomopathogenic fungus Metarhizium brunneum. We
    use a) a comparative approach analysing four species with either naked or cocooned
    pupae and b) a within-species analysis of a single ant species, in which both
    pupal types co-exist in the same colony. Results: We found that the presence of
    a cocoon did not compromise fungal pathogen detection by the ants and that species
    with cocooned pupae increased brood grooming after pathogen exposure. All tested
    ant species further removed brood from their nests, which was predominantly expressed
    towards larvae and naked pupae treated with the live fungal pathogen. In contrast,
    cocooned pupae exposed to live fungus were not removed at higher rates than cocooned
    pupae exposed to dead fungus or a sham control. Consistent with this, exposure
    to the live fungus caused high numbers of infections and fungal outgrowth in larvae
    and naked pupae, but not in cocooned pupae. Moreover, the ants consistently removed
    the brood prior to fungal outgrowth, ensuring a clean brood chamber. Conclusion:
    Our study suggests that the pupal cocoon has a protective effect against fungal
    infection, causing an adaptive change in sanitary behaviours by the ants. It further
    demonstrates that brood removal-originally described for honeybees as &quot;hygienic
    behaviour&quot;-is a widespread sanitary behaviour in ants, which likely has important
    implications on disease dynamics in social insect colonies.'
acknowledgement: "The study was funded by the European Research Council (Marie Curie
  ERG 036569) and Marie Curie IEF 302204 to LVU\r\nCC BY 2.0\r\n"
article_number: '225'
author:
- first_name: Simon
  full_name: Tragust, Simon
  id: 35A7A418-F248-11E8-B48F-1D18A9856A87
  last_name: Tragust
- first_name: Line V
  full_name: Ugelvig, Line V
  id: 3DC97C8E-F248-11E8-B48F-1D18A9856A87
  last_name: Ugelvig
  orcid: 0000-0003-1832-8883
- first_name: Michel
  full_name: Chapuisat, Michel
  last_name: Chapuisat
- first_name: Jürgen
  full_name: Heinze, Jürgen
  last_name: Heinze
- first_name: Sylvia
  full_name: Cremer, Sylvia
  id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
  last_name: Cremer
  orcid: 0000-0002-2193-3868
citation:
  ama: Tragust S, Ugelvig LV, Chapuisat M, Heinze J, Cremer S. Pupal cocoons affect
    sanitary brood care and limit fungal infections in ant colonies. <i>BMC Evolutionary
    Biology</i>. 2013;13(1). doi:<a href="https://doi.org/10.1186/1471-2148-13-225">10.1186/1471-2148-13-225</a>
  apa: Tragust, S., Ugelvig, L. V., Chapuisat, M., Heinze, J., &#38; Cremer, S. (2013).
    Pupal cocoons affect sanitary brood care and limit fungal infections in ant colonies.
    <i>BMC Evolutionary Biology</i>. BioMed Central. <a href="https://doi.org/10.1186/1471-2148-13-225">https://doi.org/10.1186/1471-2148-13-225</a>
  chicago: Tragust, Simon, Line V Ugelvig, Michel Chapuisat, Jürgen Heinze, and Sylvia
    Cremer. “Pupal Cocoons Affect Sanitary Brood Care and Limit Fungal Infections
    in Ant Colonies.” <i>BMC Evolutionary Biology</i>. BioMed Central, 2013. <a href="https://doi.org/10.1186/1471-2148-13-225">https://doi.org/10.1186/1471-2148-13-225</a>.
  ieee: S. Tragust, L. V. Ugelvig, M. Chapuisat, J. Heinze, and S. Cremer, “Pupal
    cocoons affect sanitary brood care and limit fungal infections in ant colonies,”
    <i>BMC Evolutionary Biology</i>, vol. 13, no. 1. BioMed Central, 2013.
  ista: Tragust S, Ugelvig LV, Chapuisat M, Heinze J, Cremer S. 2013. Pupal cocoons
    affect sanitary brood care and limit fungal infections in ant colonies. BMC Evolutionary
    Biology. 13(1), 225.
  mla: Tragust, Simon, et al. “Pupal Cocoons Affect Sanitary Brood Care and Limit
    Fungal Infections in Ant Colonies.” <i>BMC Evolutionary Biology</i>, vol. 13,
    no. 1, 225, BioMed Central, 2013, doi:<a href="https://doi.org/10.1186/1471-2148-13-225">10.1186/1471-2148-13-225</a>.
  short: S. Tragust, L.V. Ugelvig, M. Chapuisat, J. Heinze, S. Cremer, BMC Evolutionary
    Biology 13 (2013).
date_created: 2018-12-11T11:56:46Z
date_published: 2013-10-14T00:00:00Z
date_updated: 2023-02-23T14:07:06Z
day: '14'
ddc:
- '570'
department:
- _id: SyCr
doi: 10.1186/1471-2148-13-225
ec_funded: 1
file:
- access_level: open_access
  checksum: c16ef36f2a10786a7885e19c4528d707
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:13:41Z
  date_updated: 2020-07-14T12:45:37Z
  file_id: '5026'
  file_name: IST-2016-402-v1+1_1471-2148-13-225.pdf
  file_size: 281736
  relation: main_file
file_date_updated: 2020-07-14T12:45:37Z
has_accepted_license: '1'
intvolume: '        13'
issue: '1'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 25DC711C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '243071'
  name: 'Social Vaccination in Ant Colonies: from Individual Mechanisms to Society
    Effects'
- _id: 25DAF0B2-B435-11E9-9278-68D0E5697425
  grant_number: CR-118/3-1
  name: Host-Parasite Coevolution
publication: BMC Evolutionary Biology
publication_status: published
publisher: BioMed Central
publist_id: '4647'
pubrep_id: '402'
quality_controlled: '1'
related_material:
  record:
  - id: '9753'
    relation: research_data
    status: public
scopus_import: 1
status: public
title: Pupal cocoons affect sanitary brood care and limit fungal infections in ant
  colonies
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2013'
...
---
_id: '2286'
abstract:
- lang: eng
  text: The spatiotemporal control of cell divisions is a key factor in epithelial
    morphogenesis and patterning. Mao et al (2013) now describe how differential rates
    of proliferation within the Drosophila wing disc epithelium give rise to anisotropic
    tissue tension in peripheral/proximal regions of the disc. Such global tissue
    tension anisotropy in turn determines the orientation of cell divisions by controlling
    epithelial cell elongation.
author:
- first_name: Pedro
  full_name: Campinho, Pedro
  id: 3AFBBC42-F248-11E8-B48F-1D18A9856A87
  last_name: Campinho
  orcid: 0000-0002-8526-5416
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
citation:
  ama: Campinho P, Heisenberg C-PJ. The force and effect of cell proliferation. <i>EMBO
    Journal</i>. 2013;32(21):2783-2784. doi:<a href="https://doi.org/10.1038/emboj.2013.225">10.1038/emboj.2013.225</a>
  apa: Campinho, P., &#38; Heisenberg, C.-P. J. (2013). The force and effect of cell
    proliferation. <i>EMBO Journal</i>. Wiley-Blackwell. <a href="https://doi.org/10.1038/emboj.2013.225">https://doi.org/10.1038/emboj.2013.225</a>
  chicago: Campinho, Pedro, and Carl-Philipp J Heisenberg. “The Force and Effect of
    Cell Proliferation.” <i>EMBO Journal</i>. Wiley-Blackwell, 2013. <a href="https://doi.org/10.1038/emboj.2013.225">https://doi.org/10.1038/emboj.2013.225</a>.
  ieee: P. Campinho and C.-P. J. Heisenberg, “The force and effect of cell proliferation,”
    <i>EMBO Journal</i>, vol. 32, no. 21. Wiley-Blackwell, pp. 2783–2784, 2013.
  ista: Campinho P, Heisenberg C-PJ. 2013. The force and effect of cell proliferation.
    EMBO Journal. 32(21), 2783–2784.
  mla: Campinho, Pedro, and Carl-Philipp J. Heisenberg. “The Force and Effect of Cell
    Proliferation.” <i>EMBO Journal</i>, vol. 32, no. 21, Wiley-Blackwell, 2013, pp.
    2783–84, doi:<a href="https://doi.org/10.1038/emboj.2013.225">10.1038/emboj.2013.225</a>.
  short: P. Campinho, C.-P.J. Heisenberg, EMBO Journal 32 (2013) 2783–2784.
date_created: 2018-12-11T11:56:46Z
date_published: 2013-10-04T00:00:00Z
date_updated: 2021-01-12T06:56:32Z
day: '04'
department:
- _id: CaHe
doi: 10.1038/emboj.2013.225
external_id:
  pmid:
  - '24097062'
intvolume: '        32'
issue: '21'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3817470/
month: '10'
oa: 1
oa_version: Submitted Version
page: 2783 - 2784
pmid: 1
publication: EMBO Journal
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4645'
quality_controlled: '1'
scopus_import: 1
status: public
title: The force and effect of cell proliferation
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2013'
...
---
_id: '2287'
abstract:
- lang: eng
  text: Negative frequency-dependent selection should result in equal sex ratios in
    large populations of dioecious flowering plants, but deviations from equality
    are commonly reported. A variety of ecological and genetic factors can explain
    biased sex ratios, although the mechanisms involved are not well understood. Most
    dioecious species are long-lived and/or clonal complicating efforts to identify
    stages during the life cycle when biases develop. We investigated the demographic
    correlates of sex-ratio variation in two chromosome races of Rumex hastatulus,
    an annual, wind-pollinated colonizer of open habitats from the southern USA. We
    examined sex ratios in 46 populations and evaluated the hypothesis that the proximity
    of males in the local mating environment, through its influence on gametophytic
    selection, is the primary cause of female-biased sex ratios. Female-biased sex
    ratios characterized most populations of R.  hastatulus (mean sex ratio = 0.62),
    with significant female bias in 89% of populations. Large, high-density populations
    had the highest proportion of females, whereas smaller, low-density populations
    had sex ratios closer to equality. Progeny sex ratios were more female biased
    when males were in closer proximity to females, a result consistent with the gametophytic
    selection hypothesis. Our results suggest that interactions between demographic
    and genetic factors are probably the main cause of female-biased sex ratios in
    R. hastatulus. The annual life cycle of this species may limit the scope for selection
    against males and may account for the weaker degree of bias in comparison with
    perennial Rumex species.
author:
- first_name: Melinda
  full_name: Pickup, Melinda
  id: 2C78037E-F248-11E8-B48F-1D18A9856A87
  last_name: Pickup
  orcid: 0000-0001-6118-0541
- first_name: Spencer
  full_name: Barrett, Spencer
  last_name: Barrett
citation:
  ama: Pickup M, Barrett S. The influence of demography and local mating environment
    on sex ratios in a wind-pollinated dioecious plant. <i>Ecology and Evolution</i>.
    2013;3(3):629-639. doi:<a href="https://doi.org/10.1002/ece3.465">10.1002/ece3.465</a>
  apa: Pickup, M., &#38; Barrett, S. (2013). The influence of demography and local
    mating environment on sex ratios in a wind-pollinated dioecious plant. <i>Ecology
    and Evolution</i>. Wiley-Blackwell. <a href="https://doi.org/10.1002/ece3.465">https://doi.org/10.1002/ece3.465</a>
  chicago: Pickup, Melinda, and Spencer Barrett. “The Influence of Demography and
    Local Mating Environment on Sex Ratios in a Wind-Pollinated Dioecious Plant.”
    <i>Ecology and Evolution</i>. Wiley-Blackwell, 2013. <a href="https://doi.org/10.1002/ece3.465">https://doi.org/10.1002/ece3.465</a>.
  ieee: M. Pickup and S. Barrett, “The influence of demography and local mating environment
    on sex ratios in a wind-pollinated dioecious plant,” <i>Ecology and Evolution</i>,
    vol. 3, no. 3. Wiley-Blackwell, pp. 629–639, 2013.
  ista: Pickup M, Barrett S. 2013. The influence of demography and local mating environment
    on sex ratios in a wind-pollinated dioecious plant. Ecology and Evolution. 3(3),
    629–639.
  mla: Pickup, Melinda, and Spencer Barrett. “The Influence of Demography and Local
    Mating Environment on Sex Ratios in a Wind-Pollinated Dioecious Plant.” <i>Ecology
    and Evolution</i>, vol. 3, no. 3, Wiley-Blackwell, 2013, pp. 629–39, doi:<a href="https://doi.org/10.1002/ece3.465">10.1002/ece3.465</a>.
  short: M. Pickup, S. Barrett, Ecology and Evolution 3 (2013) 629–639.
date_created: 2018-12-11T11:56:47Z
date_published: 2013-03-01T00:00:00Z
date_updated: 2021-01-12T06:56:32Z
day: '01'
ddc:
- '576'
department:
- _id: NiBa
doi: 10.1002/ece3.465
file:
- access_level: open_access
  checksum: b5531bab4c0dec396bf5c8497fe178bf
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:17:35Z
  date_updated: 2020-07-14T12:45:37Z
  file_id: '5290'
  file_name: IST-2016-416-v1+1_Pickup_et_al-2013-Ecology_and_Evolution.pdf
  file_size: 626949
  relation: main_file
file_date_updated: 2020-07-14T12:45:37Z
has_accepted_license: '1'
intvolume: '         3'
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 629 - 639
publication: Ecology and Evolution
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4644'
pubrep_id: '416'
quality_controlled: '1'
scopus_import: 1
status: public
title: The influence of demography and local mating environment on sex ratios in a
  wind-pollinated dioecious plant
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2013'
...
---
_id: '2289'
abstract:
- lang: eng
  text: Formal verification aims to improve the quality of software by detecting errors
    before they do harm. At the basis of formal verification is the logical notion
    of correctness, which purports to capture whether or not a program behaves as
    desired. We suggest that the boolean partition of software into correct and incorrect
    programs falls short of the practical need to assess the behavior of software
    in a more nuanced fashion against multiple criteria. We therefore propose to introduce
    quantitative fitness measures for programs, specifically for measuring the function,
    performance, and robustness of reactive programs such as concurrent processes.
    This article describes the goals of the ERC Advanced Investigator Project QUAREM.
    The project aims to build and evaluate a theory of quantitative fitness measures
    for reactive models. Such a theory must strive to obtain quantitative generalizations
    of the paradigms that have been success stories in qualitative reactive modeling,
    such as compositionality, property-preserving abstraction and abstraction refinement,
    model checking, and synthesis. The theory will be evaluated not only in the context
    of software and hardware engineering, but also in the context of systems biology.
    In particular, we will use the quantitative reactive models and fitness measures
    developed in this project for testing hypotheses about the mechanisms behind data
    from biological experiments.
author:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
citation:
  ama: Henzinger TA. Quantitative reactive modeling and verification. <i>Computer
    Science Research and Development</i>. 2013;28(4):331-344. doi:<a href="https://doi.org/10.1007/s00450-013-0251-7">10.1007/s00450-013-0251-7</a>
  apa: Henzinger, T. A. (2013). Quantitative reactive modeling and verification. <i>Computer
    Science Research and Development</i>. Springer. <a href="https://doi.org/10.1007/s00450-013-0251-7">https://doi.org/10.1007/s00450-013-0251-7</a>
  chicago: Henzinger, Thomas A. “Quantitative Reactive Modeling and Verification.”
    <i>Computer Science Research and Development</i>. Springer, 2013. <a href="https://doi.org/10.1007/s00450-013-0251-7">https://doi.org/10.1007/s00450-013-0251-7</a>.
  ieee: T. A. Henzinger, “Quantitative reactive modeling and verification,” <i>Computer
    Science Research and Development</i>, vol. 28, no. 4. Springer, pp. 331–344, 2013.
  ista: Henzinger TA. 2013. Quantitative reactive modeling and verification. Computer
    Science Research and Development. 28(4), 331–344.
  mla: Henzinger, Thomas A. “Quantitative Reactive Modeling and Verification.” <i>Computer
    Science Research and Development</i>, vol. 28, no. 4, Springer, 2013, pp. 331–44,
    doi:<a href="https://doi.org/10.1007/s00450-013-0251-7">10.1007/s00450-013-0251-7</a>.
  short: T.A. Henzinger, Computer Science Research and Development 28 (2013) 331–344.
date_created: 2018-12-11T11:56:47Z
date_published: 2013-10-05T00:00:00Z
date_updated: 2021-01-12T06:56:33Z
day: '05'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/s00450-013-0251-7
ec_funded: 1
file:
- access_level: open_access
  checksum: f117a00f9f046165bfa95595681e08a0
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:17:51Z
  date_updated: 2020-07-14T12:45:37Z
  file_id: '5308'
  file_name: IST-2016-626-v1+1_s00450-013-0251-7.pdf
  file_size: 570361
  relation: main_file
file_date_updated: 2020-07-14T12:45:37Z
has_accepted_license: '1'
intvolume: '        28'
issue: '4'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 331 - 344
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
publication: Computer Science Research and Development
publication_status: published
publisher: Springer
publist_id: '4642'
pubrep_id: '626'
quality_controlled: '1'
scopus_import: 1
status: public
title: Quantitative reactive modeling and verification
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 28
year: '2013'
...
---
_id: '2290'
abstract:
- lang: eng
  text: The plant hormone indole-acetic acid (auxin) is essential for many aspects
    of plant development. Auxin-mediated growth regulation typically involves the
    establishment of an auxin concentration gradient mediated by polarly localized
    auxin transporters. The localization of auxin carriers and their amount at the
    plasma membrane are controlled by membrane trafficking processes such as secretion,
    endocytosis, and recycling. In contrast to endocytosis or recycling, how the secretory
    pathway mediates the localization of auxin carriers is not well understood. In
    this study we have used the differential cell elongation process during apical
    hook development to elucidate the mechanisms underlying the post-Golgi trafficking
    of auxin carriers in Arabidopsis. We show that differential cell elongation during
    apical hook development is defective in Arabidopsis mutant echidna (ech). ECH
    protein is required for the trans-Golgi network (TGN)-mediated trafficking of
    the auxin influx carrier AUX1 to the plasma membrane. In contrast, ech mutation
    only marginally perturbs the trafficking of the highly related auxin influx carrier
    LIKE-AUX1-3 or the auxin efflux carrier PIN-FORMED-3, both also involved in hook
    development. Electron tomography reveals that the trafficking defects in ech mutant
    are associated with the perturbation of secretory vesicle genesis from the TGN.
    Our results identify differential mechanisms for the post-Golgi trafficking of
    de novo-synthesized auxin carriers to plasma membrane from the TGN and reveal
    how trafficking of auxin influx carriers mediates the control of differential
    cell elongation in apical hook development.
author:
- first_name: Yohann
  full_name: Boutté, Yohann
  last_name: Boutté
- first_name: Kristoffer
  full_name: Jonsson, Kristoffer
  last_name: Jonsson
- first_name: Heather
  full_name: Mcfarlane, Heather
  last_name: Mcfarlane
- first_name: Errin
  full_name: Johnson, Errin
  last_name: Johnson
- first_name: Delphine
  full_name: Gendre, Delphine
  last_name: Gendre
- first_name: Ranjan
  full_name: Swarup, Ranjan
  last_name: Swarup
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Lacey
  full_name: Samuels, Lacey
  last_name: Samuels
- first_name: Stéphanie
  full_name: Robert, Stéphanie
  last_name: Robert
- first_name: Rishikesh
  full_name: Bhalerao, Rishikesh
  last_name: Bhalerao
citation:
  ama: Boutté Y, Jonsson K, Mcfarlane H, et al. ECHIDNA mediated post Golgi trafficking
    of auxin carriers for differential cell elongation. <i>PNAS</i>. 2013;110(40):16259-16264.
    doi:<a href="https://doi.org/10.1073/pnas.1309057110">10.1073/pnas.1309057110</a>
  apa: Boutté, Y., Jonsson, K., Mcfarlane, H., Johnson, E., Gendre, D., Swarup, R.,
    … Bhalerao, R. (2013). ECHIDNA mediated post Golgi trafficking of auxin carriers
    for differential cell elongation. <i>PNAS</i>. National Academy of Sciences. <a
    href="https://doi.org/10.1073/pnas.1309057110">https://doi.org/10.1073/pnas.1309057110</a>
  chicago: Boutté, Yohann, Kristoffer Jonsson, Heather Mcfarlane, Errin Johnson, Delphine
    Gendre, Ranjan Swarup, Jiří Friml, Lacey Samuels, Stéphanie Robert, and Rishikesh
    Bhalerao. “ECHIDNA Mediated Post Golgi Trafficking of Auxin Carriers for Differential
    Cell Elongation.” <i>PNAS</i>. National Academy of Sciences, 2013. <a href="https://doi.org/10.1073/pnas.1309057110">https://doi.org/10.1073/pnas.1309057110</a>.
  ieee: Y. Boutté <i>et al.</i>, “ECHIDNA mediated post Golgi trafficking of auxin
    carriers for differential cell elongation,” <i>PNAS</i>, vol. 110, no. 40. National
    Academy of Sciences, pp. 16259–16264, 2013.
  ista: Boutté Y, Jonsson K, Mcfarlane H, Johnson E, Gendre D, Swarup R, Friml J,
    Samuels L, Robert S, Bhalerao R. 2013. ECHIDNA mediated post Golgi trafficking
    of auxin carriers for differential cell elongation. PNAS. 110(40), 16259–16264.
  mla: Boutté, Yohann, et al. “ECHIDNA Mediated Post Golgi Trafficking of Auxin Carriers
    for Differential Cell Elongation.” <i>PNAS</i>, vol. 110, no. 40, National Academy
    of Sciences, 2013, pp. 16259–64, doi:<a href="https://doi.org/10.1073/pnas.1309057110">10.1073/pnas.1309057110</a>.
  short: Y. Boutté, K. Jonsson, H. Mcfarlane, E. Johnson, D. Gendre, R. Swarup, J.
    Friml, L. Samuels, S. Robert, R. Bhalerao, PNAS 110 (2013) 16259–16264.
date_created: 2018-12-11T11:56:48Z
date_published: 2013-10-01T00:00:00Z
date_updated: 2021-01-12T06:56:33Z
day: '01'
department:
- _id: JiFr
doi: 10.1073/pnas.1309057110
external_id:
  pmid:
  - '24043780'
intvolume: '       110'
issue: '40'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3791722/
month: '10'
oa: 1
oa_version: Submitted Version
page: 16259 - 16264
pmid: 1
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '4639'
quality_controlled: '1'
scopus_import: 1
status: public
title: ECHIDNA mediated post Golgi trafficking of auxin carriers for differential
  cell elongation
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 110
year: '2013'
...
---
_id: '2291'
abstract:
- lang: eng
  text: "Cryptographic access control promises to offer easily distributed trust and
    broader applicability, while reducing reliance on low-level online monitors. Traditional
    implementations of cryptographic access control rely on simple cryptographic primitives
    whereas recent endeavors employ primitives with richer functionality and security
    guarantees. Worryingly, few of the existing cryptographic access-control schemes
    come with precise guarantees, the gap between the policy specification and the
    implementation being analyzed only informally, if at all. In this paper we begin
    addressing this shortcoming. Unlike prior work that targeted ad-hoc policy specification,
    we look at the well-established Role-Based Access Control (RBAC) model, as used
    in a typical file system. In short, we provide a precise syntax for a computational
    version of RBAC, offer rigorous definitions for cryptographic policy enforcement
    of a large class of RBAC security policies, and demonstrate that an implementation
    based on attribute-based encryption meets our security notions. We view our main
    contribution as being at the conceptual level. Although we work with RBAC for
    concreteness, our general methodology could guide future research for uses of
    cryptography in other access-control models. \r\n"
author:
- first_name: Anna
  full_name: Ferrara, Anna
  last_name: Ferrara
- first_name: Georg
  full_name: Fuchsbauer, Georg
  id: 46B4C3EE-F248-11E8-B48F-1D18A9856A87
  last_name: Fuchsbauer
- first_name: Bogdan
  full_name: Warinschi, Bogdan
  last_name: Warinschi
citation:
  ama: 'Ferrara A, Fuchsbauer G, Warinschi B. Cryptographically enforced RBAC. In:
    IEEE; 2013:115-129. doi:<a href="https://doi.org/10.1109/CSF.2013.15">10.1109/CSF.2013.15</a>'
  apa: 'Ferrara, A., Fuchsbauer, G., &#38; Warinschi, B. (2013). Cryptographically
    enforced RBAC (pp. 115–129). Presented at the CSF: Computer Security Foundations,
    New Orleans, LA, United States: IEEE. <a href="https://doi.org/10.1109/CSF.2013.15">https://doi.org/10.1109/CSF.2013.15</a>'
  chicago: Ferrara, Anna, Georg Fuchsbauer, and Bogdan Warinschi. “Cryptographically
    Enforced RBAC,” 115–29. IEEE, 2013. <a href="https://doi.org/10.1109/CSF.2013.15">https://doi.org/10.1109/CSF.2013.15</a>.
  ieee: 'A. Ferrara, G. Fuchsbauer, and B. Warinschi, “Cryptographically enforced
    RBAC,” presented at the CSF: Computer Security Foundations, New Orleans, LA, United
    States, 2013, pp. 115–129.'
  ista: 'Ferrara A, Fuchsbauer G, Warinschi B. 2013. Cryptographically enforced RBAC.
    CSF: Computer Security Foundations, 115–129.'
  mla: Ferrara, Anna, et al. <i>Cryptographically Enforced RBAC</i>. IEEE, 2013, pp.
    115–29, doi:<a href="https://doi.org/10.1109/CSF.2013.15">10.1109/CSF.2013.15</a>.
  short: A. Ferrara, G. Fuchsbauer, B. Warinschi, in:, IEEE, 2013, pp. 115–129.
conference:
  end_date: 2013-09-28
  location: New Orleans, LA, United States
  name: 'CSF: Computer Security Foundations'
  start_date: 2013-09-26
date_created: 2018-12-11T11:56:48Z
date_published: 2013-09-01T00:00:00Z
date_updated: 2021-01-12T06:56:34Z
day: '01'
department:
- _id: KrPi
doi: 10.1109/CSF.2013.15
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://eprint.iacr.org/2013/492
month: '09'
oa: 1
oa_version: Submitted Version
page: 115 - 129
publication_status: published
publisher: IEEE
publist_id: '4637'
quality_controlled: '1'
scopus_import: 1
status: public
title: Cryptographically enforced RBAC
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2293'
abstract:
- lang: eng
  text: Many computer vision problems have an asymmetric distribution of information
    between training and test time. In this work, we study the case where we are given
    additional information about the training data, which however will not be available
    at test time. This situation is called learning using privileged information (LUPI).
    We introduce two maximum-margin techniques that are able to make use of this additional
    source of information, and we show that the framework is applicable to several
    scenarios that have been studied in computer vision before. Experiments with attributes,
    bounding boxes, image tags and rationales as additional information in object
    classification show promising results.
author:
- first_name: Viktoriia
  full_name: Sharmanska, Viktoriia
  id: 2EA6D09E-F248-11E8-B48F-1D18A9856A87
  last_name: Sharmanska
  orcid: 0000-0003-0192-9308
- first_name: Novi
  full_name: Quadrianto, Novi
  last_name: Quadrianto
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Sharmanska V, Quadrianto N, Lampert C. Learning to rank using privileged information.
    In: IEEE; 2013:825-832. doi:<a href="https://doi.org/10.1109/ICCV.2013.107">10.1109/ICCV.2013.107</a>'
  apa: 'Sharmanska, V., Quadrianto, N., &#38; Lampert, C. (2013). Learning to rank
    using privileged information (pp. 825–832). Presented at the ICCV: International
    Conference on Computer Vision, Sydney, Australia: IEEE. <a href="https://doi.org/10.1109/ICCV.2013.107">https://doi.org/10.1109/ICCV.2013.107</a>'
  chicago: Sharmanska, Viktoriia, Novi Quadrianto, and Christoph Lampert. “Learning
    to Rank Using Privileged Information,” 825–32. IEEE, 2013. <a href="https://doi.org/10.1109/ICCV.2013.107">https://doi.org/10.1109/ICCV.2013.107</a>.
  ieee: 'V. Sharmanska, N. Quadrianto, and C. Lampert, “Learning to rank using privileged
    information,” presented at the ICCV: International Conference on Computer Vision,
    Sydney, Australia, 2013, pp. 825–832.'
  ista: 'Sharmanska V, Quadrianto N, Lampert C. 2013. Learning to rank using privileged
    information. ICCV: International Conference on Computer Vision, 825–832.'
  mla: Sharmanska, Viktoriia, et al. <i>Learning to Rank Using Privileged Information</i>.
    IEEE, 2013, pp. 825–32, doi:<a href="https://doi.org/10.1109/ICCV.2013.107">10.1109/ICCV.2013.107</a>.
  short: V. Sharmanska, N. Quadrianto, C. Lampert, in:, IEEE, 2013, pp. 825–832.
conference:
  end_date: 2013-12-08
  location: Sydney, Australia
  name: 'ICCV: International Conference on Computer Vision'
  start_date: 2013-12-01
date_created: 2018-12-11T11:56:49Z
date_published: 2013-12-01T00:00:00Z
date_updated: 2023-02-23T10:36:41Z
day: '01'
department:
- _id: ChLa
doi: 10.1109/ICCV.2013.107
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: www.cv-foundation.org/openaccess/content_iccv_2013/papers/Sharmanska_Learning_to_Rank_2013_ICCV_paper.pdf
month: '12'
oa: 1
oa_version: Submitted Version
page: 825 - 832
project:
- _id: 2532554C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '308036'
  name: Lifelong Learning of Visual Scene Understanding
publication_status: published
publisher: IEEE
publist_id: '4635'
quality_controlled: '1'
scopus_import: 1
status: public
title: Learning to rank using privileged information
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2294'
abstract:
- lang: eng
  text: "In this work we propose a system for automatic classification of Drosophila
    embryos into developmental stages.\r\nWhile the system is designed to solve an
    actual problem in biological research, we believe that the principle underly-\r\ning
    it is interesting not only for biologists, but also for researchers in computer
    vision. The main idea is to combine two orthogonal sources of information:  one
    is a classifier trained on strongly invariant features,  which makes it applicable
    to images of very different conditions, but also leads to rather noisy predictions.
    The other is a label propagation step based on a more powerful similarity measure
    that however is only consistent within specific subsets of the data at a time.\r\nIn
    our biological setup, the information sources are the shape and the staining patterns
    of embryo images. We show\r\nexperimentally  that  while  neither  of  the  methods
    \ can  be used by itself to achieve satisfactory results, their combina-\r\ntion
    achieves prediction quality comparable to human performance."
author:
- first_name: Tomas
  full_name: Kazmar, Tomas
  last_name: Kazmar
- first_name: Evgeny
  full_name: Kvon, Evgeny
  last_name: Kvon
- first_name: Alexander
  full_name: Stark, Alexander
  last_name: Stark
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Kazmar T, Kvon E, Stark A, Lampert C. Drosophila Embryo Stage Annotation using
    Label Propagation. In: IEEE; 2013. doi:<a href="https://doi.org/10.1109/ICCV.2013.139">10.1109/ICCV.2013.139</a>'
  apa: 'Kazmar, T., Kvon, E., Stark, A., &#38; Lampert, C. (2013). Drosophila Embryo
    Stage Annotation using Label Propagation. Presented at the ICCV: International
    Conference on Computer Vision, Sydney, Australia: IEEE. <a href="https://doi.org/10.1109/ICCV.2013.139">https://doi.org/10.1109/ICCV.2013.139</a>'
  chicago: Kazmar, Tomas, Evgeny Kvon, Alexander Stark, and Christoph Lampert. “Drosophila
    Embryo Stage Annotation Using Label Propagation.” IEEE, 2013. <a href="https://doi.org/10.1109/ICCV.2013.139">https://doi.org/10.1109/ICCV.2013.139</a>.
  ieee: 'T. Kazmar, E. Kvon, A. Stark, and C. Lampert, “Drosophila Embryo Stage Annotation
    using Label Propagation,” presented at the ICCV: International Conference on Computer
    Vision, Sydney, Australia, 2013.'
  ista: 'Kazmar T, Kvon E, Stark A, Lampert C. 2013. Drosophila Embryo Stage Annotation
    using Label Propagation. ICCV: International Conference on Computer Vision.'
  mla: Kazmar, Tomas, et al. <i>Drosophila Embryo Stage Annotation Using Label Propagation</i>.
    IEEE, 2013, doi:<a href="https://doi.org/10.1109/ICCV.2013.139">10.1109/ICCV.2013.139</a>.
  short: T. Kazmar, E. Kvon, A. Stark, C. Lampert, in:, IEEE, 2013.
conference:
  end_date: 2013-12-08
  location: Sydney, Australia
  name: 'ICCV: International Conference on Computer Vision'
  start_date: 2013-12-01
date_created: 2018-12-11T11:56:49Z
date_published: 2013-12-01T00:00:00Z
date_updated: 2021-01-12T06:56:35Z
day: '01'
department:
- _id: ChLa
doi: 10.1109/ICCV.2013.139
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.cv-foundation.org/openaccess/ICCV2013.py
month: '12'
oa: 1
oa_version: Submitted Version
project:
- _id: 2532554C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '308036'
  name: Lifelong Learning of Visual Scene Understanding
publication_status: published
publisher: IEEE
publist_id: '4634'
quality_controlled: '1'
scopus_import: 1
status: public
title: Drosophila Embryo Stage Annotation using Label Propagation
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2295'
abstract:
- lang: eng
  text: We consider partially observable Markov decision processes (POMDPs) with ω-regular
    conditions specified as parity objectives. The qualitative analysis problem given
    a POMDP and a parity objective asks whether there is a strategy to ensure that
    the objective is satisfied with probability 1 (resp. positive probability). While
    the qualitative analysis problems are known to be undecidable even for very special
    cases of parity objectives, we establish decidability (with optimal EXPTIME-complete
    complexity) of the qualitative analysis problems for POMDPs with all parity objectives
    under finite-memory strategies. We also establish asymptotically optimal (exponential)
    memory bounds.
alternative_title:
- LIPIcs
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Chmelik, Martin
  id: 3624234E-F248-11E8-B48F-1D18A9856A87
  last_name: Chmelik
- first_name: Mathieu
  full_name: Tracol, Mathieu
  id: 3F54FA38-F248-11E8-B48F-1D18A9856A87
  last_name: Tracol
citation:
  ama: Chatterjee K, Chmelik M, Tracol M. What is decidable about partially observable
    Markov decision processes with omega-regular objectives. 2013;23:165-180. doi:<a
    href="https://doi.org/10.4230/LIPIcs.CSL.2013.165">10.4230/LIPIcs.CSL.2013.165</a>
  apa: 'Chatterjee, K., Chmelik, M., &#38; Tracol, M. (2013). What is decidable about
    partially observable Markov decision processes with omega-regular objectives.
    Presented at the CSL: Computer Science Logic, Torino, Italy: Schloss Dagstuhl
    - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.CSL.2013.165">https://doi.org/10.4230/LIPIcs.CSL.2013.165</a>'
  chicago: Chatterjee, Krishnendu, Martin Chmelik, and Mathieu Tracol. “What Is Decidable
    about Partially Observable Markov Decision Processes with Omega-Regular Objectives.”
    Leibniz International Proceedings in Informatics. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2013. <a href="https://doi.org/10.4230/LIPIcs.CSL.2013.165">https://doi.org/10.4230/LIPIcs.CSL.2013.165</a>.
  ieee: K. Chatterjee, M. Chmelik, and M. Tracol, “What is decidable about partially
    observable Markov decision processes with omega-regular objectives,” vol. 23.
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik, pp. 165–180, 2013.
  ista: Chatterjee K, Chmelik M, Tracol M. 2013. What is decidable about partially
    observable Markov decision processes with omega-regular objectives. 23, 165–180.
  mla: Chatterjee, Krishnendu, et al. <i>What Is Decidable about Partially Observable
    Markov Decision Processes with Omega-Regular Objectives</i>. Vol. 23, Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 165–80, doi:<a href="https://doi.org/10.4230/LIPIcs.CSL.2013.165">10.4230/LIPIcs.CSL.2013.165</a>.
  short: K. Chatterjee, M. Chmelik, M. Tracol, 23 (2013) 165–180.
conference:
  end_date: 2013-09-05
  location: Torino, Italy
  name: 'CSL: Computer Science Logic'
  start_date: 2013-09-02
date_created: 2018-12-11T11:56:50Z
date_published: 2013-08-27T00:00:00Z
date_updated: 2023-02-23T12:24:38Z
day: '27'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.4230/LIPIcs.CSL.2013.165
ec_funded: 1
file:
- access_level: open_access
  checksum: ba2828322955574d9283bea0e17a37a6
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:09:42Z
  date_updated: 2020-07-14T12:45:37Z
  file_id: '4766'
  file_name: IST-2017-756-v1+1_2.pdf
  file_size: 345171
  relation: main_file
file_date_updated: 2020-07-14T12:45:37Z
has_accepted_license: '1'
intvolume: '        23'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 165 - 180
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '4633'
pubrep_id: '756'
quality_controlled: '1'
related_material:
  record:
  - id: '1477'
    relation: later_version
    status: public
  - id: '5400'
    relation: earlier_version
    status: public
scopus_import: 1
series_title: Leibniz International Proceedings in Informatics
status: public
title: What is decidable about partially observable Markov decision processes with
  omega-regular objectives
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2013'
...
---
_id: '2297'
abstract:
- lang: eng
  text: We present an overview of mathematical results on the low temperature properties
    of dilute quantum gases, which have been obtained in the past few years. The presentation
    includes a discussion of Bose-Einstein condensation, the excitation spectrum for
    trapped gases and its relation to superfluidity, as well as the appearance of
    quantized vortices in rotating systems. All these properties are intensely being
    studied in current experiments on cold atomic gases. We will give a description
    of the mathematics involved in understanding these phenomena, starting from the
    underlying many-body Schrödinger equation.
arxiv: 1
author:
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: 'Seiringer R. Hot topics in cold gases: A mathematical physics perspective.
    <i>Japanese Journal of Mathematics</i>. 2013;8(2):185-232. doi:<a href="https://doi.org/10.1007/s11537-013-1264-5">10.1007/s11537-013-1264-5</a>'
  apa: 'Seiringer, R. (2013). Hot topics in cold gases: A mathematical physics perspective.
    <i>Japanese Journal of Mathematics</i>. Springer. <a href="https://doi.org/10.1007/s11537-013-1264-5">https://doi.org/10.1007/s11537-013-1264-5</a>'
  chicago: 'Seiringer, Robert. “Hot Topics in Cold Gases: A Mathematical Physics Perspective.”
    <i>Japanese Journal of Mathematics</i>. Springer, 2013. <a href="https://doi.org/10.1007/s11537-013-1264-5">https://doi.org/10.1007/s11537-013-1264-5</a>.'
  ieee: 'R. Seiringer, “Hot topics in cold gases: A mathematical physics perspective,”
    <i>Japanese Journal of Mathematics</i>, vol. 8, no. 2. Springer, pp. 185–232,
    2013.'
  ista: 'Seiringer R. 2013. Hot topics in cold gases: A mathematical physics perspective.
    Japanese Journal of Mathematics. 8(2), 185–232.'
  mla: 'Seiringer, Robert. “Hot Topics in Cold Gases: A Mathematical Physics Perspective.”
    <i>Japanese Journal of Mathematics</i>, vol. 8, no. 2, Springer, 2013, pp. 185–232,
    doi:<a href="https://doi.org/10.1007/s11537-013-1264-5">10.1007/s11537-013-1264-5</a>.'
  short: R. Seiringer, Japanese Journal of Mathematics 8 (2013) 185–232.
date_created: 2018-12-11T11:56:50Z
date_published: 2013-09-24T00:00:00Z
date_updated: 2021-01-12T06:56:36Z
day: '24'
department:
- _id: RoSe
doi: 10.1007/s11537-013-1264-5
external_id:
  arxiv:
  - '0908.3686'
intvolume: '         8'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0908.3686
month: '09'
oa: 1
oa_version: Preprint
page: 185 - 232
publication: Japanese Journal of Mathematics
publication_status: published
publisher: Springer
publist_id: '4631'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Hot topics in cold gases: A mathematical physics perspective'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2013'
...
