---
_id: '2973'
abstract:
- lang: eng
text: "Efficient zero-knowledge proofs of knowledge (ZK-PoK) are basic building
blocks of many practical cryptographic applications such as identification schemes,
group signatures, and secure multiparty computation. Currently, first applications
that critically rely on ZK-PoKs are being deployed in the real world. The most
prominent example is Direct Anonymous Attestation (DAA), which was adopted by
the Trusted Computing Group (TCG) and implemented as one of the functionalities
of the cryptographic Trusted Platform Module (TPM) chip.\n\nImplementing systems
using ZK-PoK turns out to be challenging, since ZK-PoK are, loosely speaking,
significantly more complex than standard crypto primitives, such as encryption
and signature schemes. As a result, implementation cycles of ZK-PoK are time-consuming
and error-prone, in particular for developers with minor or no cryptographic skills.
\n\nIn this paper we report on our ongoing and future research vision with the
goal to bring ZK-PoK to practice by making them accessible to crypto and security
engineers. To this end we are developing compilers and related tools that support
and partially automate the design, implementation, verification and secure implementation
of ZK-PoK protocols."
acknowledgement: This work is being performed within the FP7 EU project CACE (Computer
Aided Cryptography Engineering).
alternative_title:
- LNCS
author:
- first_name: Endre
full_name: Bangerter, Endre
last_name: Bangerter
- first_name: Stefania
full_name: Barzan, Stefania
last_name: Barzan
- first_name: Stephan
full_name: Stephan Krenn
id: 329FCCF0-F248-11E8-B48F-1D18A9856A87
last_name: Krenn
orcid: 0000-0003-2835-9093
- first_name: Ahmad
full_name: Sadeghi, Ahmad-Reza
last_name: Sadeghi
- first_name: Thomas
full_name: Schneider, Thomas
last_name: Schneider
- first_name: Joe
full_name: Tsay, Joe-Kai
last_name: Tsay
citation:
ama: 'Bangerter E, Barzan S, Krenn S, Sadeghi A, Schneider T, Tsay J. Bringing Zero-Knowledge
Proofs of Knowledge to Practice. In: Christianson B, Malcolm J, Matyas V, Roe
M, eds. Vol 7028. Springer; 2013:51-62. doi:10.1007/978-3-642-36213-2_9'
apa: 'Bangerter, E., Barzan, S., Krenn, S., Sadeghi, A., Schneider, T., & Tsay,
J. (2013). Bringing Zero-Knowledge Proofs of Knowledge to Practice. In B. Christianson,
J. Malcolm, V. Matyas, & M. Roe (Eds.) (Vol. 7028, pp. 51–62). Presented at
the SPW: Security Protocols Workshop, Springer. https://doi.org/10.1007/978-3-642-36213-2_9'
chicago: Bangerter, Endre, Stefania Barzan, Stephan Krenn, Ahmad Sadeghi, Thomas
Schneider, and Joe Tsay. “Bringing Zero-Knowledge Proofs of Knowledge to Practice.”
edited by Bruce Christianson, James Malcolm, Vashek Matyas, and Michael Roe, 7028:51–62.
Springer, 2013. https://doi.org/10.1007/978-3-642-36213-2_9.
ieee: 'E. Bangerter, S. Barzan, S. Krenn, A. Sadeghi, T. Schneider, and J. Tsay,
“Bringing Zero-Knowledge Proofs of Knowledge to Practice,” presented at the SPW:
Security Protocols Workshop, 2013, vol. 7028, pp. 51–62.'
ista: 'Bangerter E, Barzan S, Krenn S, Sadeghi A, Schneider T, Tsay J. 2013. Bringing
Zero-Knowledge Proofs of Knowledge to Practice. SPW: Security Protocols Workshop,
LNCS, vol. 7028, 51–62.'
mla: Bangerter, Endre, et al. Bringing Zero-Knowledge Proofs of Knowledge to
Practice. Edited by Bruce Christianson et al., vol. 7028, Springer, 2013,
pp. 51–62, doi:10.1007/978-3-642-36213-2_9.
short: E. Bangerter, S. Barzan, S. Krenn, A. Sadeghi, T. Schneider, J. Tsay, in:,
B. Christianson, J. Malcolm, V. Matyas, M. Roe (Eds.), Springer, 2013, pp. 51–62.
conference:
name: 'SPW: Security Protocols Workshop'
date_created: 2018-12-11T12:00:38Z
date_published: 2013-01-08T00:00:00Z
date_updated: 2021-01-12T07:40:10Z
day: '08'
doi: 10.1007/978-3-642-36213-2_9
editor:
- first_name: Bruce
full_name: Christianson, Bruce
last_name: Christianson
- first_name: James
full_name: Malcolm, James A.
last_name: Malcolm
- first_name: Vashek
full_name: Matyas, Vashek
last_name: Matyas
- first_name: Michael
full_name: Roe, Michael
last_name: Roe
extern: 1
intvolume: ' 7028'
main_file_link:
- open_access: '1'
url: http://eprint.iacr.org/2009/211.pdf
month: '01'
oa: 1
page: 51 - 62
publication_status: published
publisher: Springer
publist_id: '3732'
quality_controlled: 0
status: public
title: Bringing Zero-Knowledge Proofs of Knowledge to Practice
type: conference
volume: 7028
year: '2013'
...
---
_id: '3261'
abstract:
- lang: eng
text: Cells in a developing embryo have no direct way of "measuring" their
physical position. Through a variety of processes, however, the expression levels
of multiple genes come to be correlated with position, and these expression levels
thus form a code for "positional information." We show how to measure
this information, in bits, using the gap genes in the Drosophila embryo as an
example. Individual genes carry nearly two bits of information, twice as much
as expected if the expression patterns consisted only of on/off domains separated
by sharp boundaries. Taken together, four gap genes carry enough information to
define a cell's location with an error bar of ~1% along the anterior-posterior
axis of the embryo. This precision is nearly enough for each cell to have a unique
identity, which is the maximum information the system can use, and is nearly constant
along the length of the embryo. We argue that this constancy is a signature of
optimality in the transmission of information from primary morphogen inputs to
the output of the gap gene network.
author:
- first_name: Julien
full_name: Dubuis, Julien
last_name: Dubuis
- first_name: Gasper
full_name: Tkacik, Gasper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkacik
orcid: 0000-0002-6699-1455
- first_name: Eric
full_name: Wieschaus, Eric
last_name: Wieschaus
- first_name: Thomas
full_name: Gregor, Thomas
last_name: Gregor
- first_name: William
full_name: Bialek, William
last_name: Bialek
citation:
ama: Dubuis J, Tkačik G, Wieschaus E, Gregor T, Bialek W. Positional information,
in bits. PNAS. 2013;110(41):16301-16308. doi:10.1073/pnas.1315642110
apa: Dubuis, J., Tkačik, G., Wieschaus, E., Gregor, T., & Bialek, W. (2013).
Positional information, in bits. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.1315642110
chicago: Dubuis, Julien, Gašper Tkačik, Eric Wieschaus, Thomas Gregor, and William
Bialek. “Positional Information, in Bits.” PNAS. National Academy of Sciences,
2013. https://doi.org/10.1073/pnas.1315642110.
ieee: J. Dubuis, G. Tkačik, E. Wieschaus, T. Gregor, and W. Bialek, “Positional
information, in bits,” PNAS, vol. 110, no. 41. National Academy of Sciences,
pp. 16301–16308, 2013.
ista: Dubuis J, Tkačik G, Wieschaus E, Gregor T, Bialek W. 2013. Positional information,
in bits. PNAS. 110(41), 16301–16308.
mla: Dubuis, Julien, et al. “Positional Information, in Bits.” PNAS, vol.
110, no. 41, National Academy of Sciences, 2013, pp. 16301–08, doi:10.1073/pnas.1315642110.
short: J. Dubuis, G. Tkačik, E. Wieschaus, T. Gregor, W. Bialek, PNAS 110 (2013)
16301–16308.
date_created: 2018-12-11T12:02:19Z
date_published: 2013-10-08T00:00:00Z
date_updated: 2021-01-12T07:42:13Z
day: '08'
ddc:
- '570'
department:
- _id: GaTk
doi: 10.1073/pnas.1315642110
external_id:
pmid:
- '24089448'
file:
- access_level: open_access
checksum: ecd859fe52a562193027d428b5524a8d
content_type: application/pdf
creator: dernst
date_created: 2019-01-22T13:53:23Z
date_updated: 2020-07-14T12:46:06Z
file_id: '5873'
file_name: 2013_PNAS_Dubuis.pdf
file_size: 1670548
relation: main_file
file_date_updated: 2020-07-14T12:46:06Z
has_accepted_license: '1'
intvolume: ' 110'
issue: '41'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 16301 - 16308
pmid: 1
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '3387'
quality_controlled: '1'
scopus_import: 1
status: public
title: Positional information, in bits
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 110
year: '2013'
...
---
_id: '10749'
abstract:
- lang: eng
text: Fluxoid quantization provides a direct means to study phase coherence. In
cuprate superconductors, there have been observations which suggest that phase
coherent superconducting fluctuations may persist at temperatures significantly
above Tc. The focus of this work is to study the vortex states in mesoscopic cuprate
superconducting samples to directly probe phase coherence over a wide range of
temperatures. We present cantilever torque susceptometry measurements of micron
and sub-micron size Bi2212 rings and disks. The high sensitivity of this technique
allowed observation of transitions between different fluxoid states of a single
ring, and the discrete vortex states of micron size disks. The dependence of magnetic
susceptibility on diameter and wall thickness of the ring was investigated. Measurements
were made at different values of the in-plane magnetic field, and over a wide
range of temperatures.
acknowledgement: This work was supported by the Center for Emergent Superconductivity,
an Energy Frontier Research Center funded by the US DOE, Office of Science.
alternative_title:
- Bulletin of the American Physical Society
article_number: N36.00001
article_processing_charge: No
author:
- first_name: Hryhoriy
full_name: Polshyn, Hryhoriy
id: edfc7cb1-526e-11ec-b05a-e6ecc27e4e48
last_name: Polshyn
orcid: 0000-0001-8223-8896
- first_name: Raffi
full_name: Budakian, Raffi
last_name: Budakian
- first_name: Genda
full_name: Gu, Genda
last_name: Gu
citation:
ama: 'Polshyn H, Budakian R, Gu G. Cantilever micro-susceptometry of mesoscopic
Bi2212 samples. In: APS March Meeting 2013. Vol 58. American Physical Society;
2013.'
apa: 'Polshyn, H., Budakian, R., & Gu, G. (2013). Cantilever micro-susceptometry
of mesoscopic Bi2212 samples. In APS March Meeting 2013 (Vol. 58). Baltimore,
MD, United States: American Physical Society.'
chicago: Polshyn, Hryhoriy, Raffi Budakian, and Genda Gu. “Cantilever Micro-Susceptometry
of Mesoscopic Bi2212 Samples.” In APS March Meeting 2013, Vol. 58. American
Physical Society, 2013.
ieee: H. Polshyn, R. Budakian, and G. Gu, “Cantilever micro-susceptometry of mesoscopic
Bi2212 samples,” in APS March Meeting 2013, Baltimore, MD, United States,
2013, vol. 58, no. 1.
ista: 'Polshyn H, Budakian R, Gu G. 2013. Cantilever micro-susceptometry of mesoscopic
Bi2212 samples. APS March Meeting 2013. APS: American Physical Society, Bulletin
of the American Physical Society, vol. 58, N36.00001.'
mla: Polshyn, Hryhoriy, et al. “Cantilever Micro-Susceptometry of Mesoscopic Bi2212
Samples.” APS March Meeting 2013, vol. 58, no. 1, N36.00001, American Physical
Society, 2013.
short: H. Polshyn, R. Budakian, G. Gu, in:, APS March Meeting 2013, American Physical
Society, 2013.
conference:
end_date: 2013-03-22
location: Baltimore, MD, United States
name: 'APS: American Physical Society'
start_date: 2013-03-18
date_created: 2022-02-08T10:34:29Z
date_published: 2013-03-01T00:00:00Z
date_updated: 2022-02-08T10:48:06Z
day: '01'
extern: '1'
intvolume: ' 58'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://meetings.aps.org/Meeting/MAR13/Event/186873
month: '03'
oa: 1
oa_version: Published Version
publication: APS March Meeting 2013
publication_identifier:
issn:
- 0003-0503
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: Cantilever micro-susceptometry of mesoscopic Bi2212 samples
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 58
year: '2013'
...
---
_id: '10895'
abstract:
- lang: eng
text: 'Due to their sessile lifestyles, plants need to deal with the limitations
and stresses imposed by the changing environment. Plants cope with these by a
remarkable developmental flexibility, which is embedded in their strategy to survive.
Plants can adjust their size, shape and number of organs, bend according to gravity
and light, and regenerate tissues that were damaged, utilizing a coordinating,
intercellular signal, the plant hormone, auxin. Another versatile signal is the
cation, Ca2+, which is a crucial second messenger for many rapid cellular processes
during responses to a wide range of endogenous and environmental signals, such
as hormones, light, drought stress and others. Auxin is a good candidate for one
of these Ca2+-activating signals. However, the role of auxin-induced Ca2+ signaling
is poorly understood. Here, we will provide an overview of possible developmental
and physiological roles, as well as mechanisms underlying the interconnection
of Ca2+ and auxin signaling. '
article_processing_charge: No
article_type: original
author:
- first_name: Steffen
full_name: Vanneste, Steffen
last_name: Vanneste
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: 'Vanneste S, Friml J. Calcium: The missing link in auxin action. Plants.
2013;2(4):650-675. doi:10.3390/plants2040650'
apa: 'Vanneste, S., & Friml, J. (2013). Calcium: The missing link in auxin action.
Plants. MDPI. https://doi.org/10.3390/plants2040650'
chicago: 'Vanneste, Steffen, and Jiří Friml. “Calcium: The Missing Link in Auxin
Action.” Plants. MDPI, 2013. https://doi.org/10.3390/plants2040650.'
ieee: 'S. Vanneste and J. Friml, “Calcium: The missing link in auxin action,” Plants,
vol. 2, no. 4. MDPI, pp. 650–675, 2013.'
ista: 'Vanneste S, Friml J. 2013. Calcium: The missing link in auxin action. Plants.
2(4), 650–675.'
mla: 'Vanneste, Steffen, and Jiří Friml. “Calcium: The Missing Link in Auxin Action.”
Plants, vol. 2, no. 4, MDPI, 2013, pp. 650–75, doi:10.3390/plants2040650.'
short: S. Vanneste, J. Friml, Plants 2 (2013) 650–675.
date_created: 2022-03-21T07:13:49Z
date_published: 2013-10-21T00:00:00Z
date_updated: 2022-03-21T12:15:29Z
day: '21'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.3390/plants2040650
external_id:
pmid:
- '27137397'
file:
- access_level: open_access
checksum: fb4ff2e820e344e253c9197544610be6
content_type: application/pdf
creator: dernst
date_created: 2022-03-21T12:12:56Z
date_updated: 2022-03-21T12:12:56Z
file_id: '10916'
file_name: 2013_Plants_Vanneste.pdf
file_size: 670188
relation: main_file
success: 1
file_date_updated: 2022-03-21T12:12:56Z
has_accepted_license: '1'
intvolume: ' 2'
issue: '4'
keyword:
- Plant Science
- Ecology
- Ecology
- Evolution
- Behavior and Systematics
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 650-675
pmid: 1
publication: Plants
publication_identifier:
issn:
- 2223-7747
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Calcium: The missing link in auxin action'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
short: CC BY (3.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2013'
...
---
_id: '11085'
abstract:
- lang: eng
text: During mitotic exit, missegregated chromosomes can recruit their own nuclear
envelope (NE) to form micronuclei (MN). MN have reduced functioning compared to
primary nuclei in the same cell, although the two compartments appear to be structurally
comparable. Here we show that over 60% of MN undergo an irreversible loss of compartmentalization
during interphase due to NE collapse. This disruption of the MN, which is induced
by defects in nuclear lamina assembly, drastically reduces nuclear functions and
can trigger massive DNA damage. MN disruption is associated with chromatin compaction
and invasion of endoplasmic reticulum (ER) tubules into the chromatin. We identified
disrupted MN in both major subtypes of human non-small-cell lung cancer, suggesting
that disrupted MN could be a useful objective biomarker for genomic instability
in solid tumors. Our study shows that NE collapse is a key event underlying MN
dysfunction and establishes a link between aberrant NE organization and aneuploidy.
article_processing_charge: No
article_type: original
author:
- first_name: Emily M.
full_name: Hatch, Emily M.
last_name: Hatch
- first_name: Andrew H.
full_name: Fischer, Andrew H.
last_name: Fischer
- first_name: Thomas J.
full_name: Deerinck, Thomas J.
last_name: Deerinck
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
citation:
ama: Hatch EM, Fischer AH, Deerinck TJ, Hetzer M. Catastrophic nuclear envelope
collapse in cancer cell micronuclei. Cell. 2013;154(1):47-60. doi:10.1016/j.cell.2013.06.007
apa: Hatch, E. M., Fischer, A. H., Deerinck, T. J., & Hetzer, M. (2013). Catastrophic
nuclear envelope collapse in cancer cell micronuclei. Cell. Elsevier. https://doi.org/10.1016/j.cell.2013.06.007
chicago: Hatch, Emily M., Andrew H. Fischer, Thomas J. Deerinck, and Martin Hetzer.
“Catastrophic Nuclear Envelope Collapse in Cancer Cell Micronuclei.” Cell.
Elsevier, 2013. https://doi.org/10.1016/j.cell.2013.06.007.
ieee: E. M. Hatch, A. H. Fischer, T. J. Deerinck, and M. Hetzer, “Catastrophic nuclear
envelope collapse in cancer cell micronuclei,” Cell, vol. 154, no. 1. Elsevier,
pp. 47–60, 2013.
ista: Hatch EM, Fischer AH, Deerinck TJ, Hetzer M. 2013. Catastrophic nuclear envelope
collapse in cancer cell micronuclei. Cell. 154(1), 47–60.
mla: Hatch, Emily M., et al. “Catastrophic Nuclear Envelope Collapse in Cancer Cell
Micronuclei.” Cell, vol. 154, no. 1, Elsevier, 2013, pp. 47–60, doi:10.1016/j.cell.2013.06.007.
short: E.M. Hatch, A.H. Fischer, T.J. Deerinck, M. Hetzer, Cell 154 (2013) 47–60.
date_created: 2022-04-07T07:50:51Z
date_published: 2013-07-03T00:00:00Z
date_updated: 2022-07-18T08:45:47Z
day: '03'
doi: 10.1016/j.cell.2013.06.007
extern: '1'
external_id:
pmid:
- '23827674'
intvolume: ' 154'
issue: '1'
keyword:
- General Biochemistry
- Genetics and Molecular Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.cell.2013.06.007
month: '07'
oa: 1
oa_version: Published Version
page: 47-60
pmid: 1
publication: Cell
publication_identifier:
issn:
- 0092-8674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Catastrophic nuclear envelope collapse in cancer cell micronuclei
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 154
year: '2013'
...
---
_id: '11086'
abstract:
- lang: eng
text: Faithful execution of developmental gene expression programs occurs at multiple
levels and involves many different components such as transcription factors, histone-modification
enzymes, and mRNA processing proteins. Recent evidence suggests that nucleoporins,
well known components that control nucleo-cytoplasmic trafficking, have wide-ranging
functions in developmental gene regulation that potentially extend beyond their
role in nuclear transport. Whether the unexpected role of nuclear pore proteins
in transcription regulation, which initially has been described in fungi and flies,
also applies to human cells is unknown. Here we show at a genome-wide level that
the nuclear pore protein NUP98 associates with developmentally regulated genes
active during human embryonic stem cell differentiation. Overexpression of a dominant
negative fragment of NUP98 levels decreases expression levels of NUP98-bound genes.
In addition, we identify two modes of developmental gene regulation by NUP98 that
are differentiated by the spatial localization of NUP98 target genes. Genes in
the initial stage of developmental induction can associate with NUP98 that is
embedded in the nuclear pores at the nuclear periphery. Alternatively, genes that
are highly induced can interact with NUP98 in the nuclear interior, away from
the nuclear pores. This work demonstrates for the first time that NUP98 dynamically
associates with the human genome during differentiation, revealing a role of a
nuclear pore protein in regulating developmental gene expression programs.
article_number: e1003308
article_processing_charge: No
article_type: original
author:
- first_name: Yun
full_name: Liang, Yun
last_name: Liang
- first_name: Tobias M.
full_name: Franks, Tobias M.
last_name: Franks
- first_name: Maria C.
full_name: Marchetto, Maria C.
last_name: Marchetto
- first_name: Fred H.
full_name: Gage, Fred H.
last_name: Gage
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
citation:
ama: Liang Y, Franks TM, Marchetto MC, Gage FH, Hetzer M. Dynamic association of
NUP98 with the human genome. PLoS Genetics. 2013;9(2). doi:10.1371/journal.pgen.1003308
apa: Liang, Y., Franks, T. M., Marchetto, M. C., Gage, F. H., & Hetzer, M. (2013).
Dynamic association of NUP98 with the human genome. PLoS Genetics. Public
Library of Science. https://doi.org/10.1371/journal.pgen.1003308
chicago: Liang, Yun, Tobias M. Franks, Maria C. Marchetto, Fred H. Gage, and Martin
Hetzer. “Dynamic Association of NUP98 with the Human Genome.” PLoS Genetics.
Public Library of Science, 2013. https://doi.org/10.1371/journal.pgen.1003308.
ieee: Y. Liang, T. M. Franks, M. C. Marchetto, F. H. Gage, and M. Hetzer, “Dynamic
association of NUP98 with the human genome,” PLoS Genetics, vol. 9, no.
2. Public Library of Science, 2013.
ista: Liang Y, Franks TM, Marchetto MC, Gage FH, Hetzer M. 2013. Dynamic association
of NUP98 with the human genome. PLoS Genetics. 9(2), e1003308.
mla: Liang, Yun, et al. “Dynamic Association of NUP98 with the Human Genome.” PLoS
Genetics, vol. 9, no. 2, e1003308, Public Library of Science, 2013, doi:10.1371/journal.pgen.1003308.
short: Y. Liang, T.M. Franks, M.C. Marchetto, F.H. Gage, M. Hetzer, PLoS Genetics
9 (2013).
date_created: 2022-04-07T07:50:59Z
date_published: 2013-02-28T00:00:00Z
date_updated: 2022-07-18T08:45:58Z
day: '28'
doi: 10.1371/journal.pgen.1003308
extern: '1'
external_id:
pmid:
- '23468646'
intvolume: ' 9'
issue: '2'
keyword:
- Cancer Research
- Genetics (clinical)
- Genetics
- Molecular Biology
- Ecology
- Evolution
- Behavior and Systematics
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1371/journal.pgen.1003308
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
publication: PLoS Genetics
publication_identifier:
issn:
- 1553-7404
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Dynamic association of NUP98 with the human genome
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 9
year: '2013'
...
---
_id: '11087'
abstract:
- lang: eng
text: Intracellular proteins with long lifespans have recently been linked to age-dependent
defects, ranging from decreased fertility to the functional decline of neurons.
Why long-lived proteins exist in metabolically active cellular environments and
how they are maintained over time remains poorly understood. Here, we provide
a system-wide identification of proteins with exceptional lifespans in the rat
brain. These proteins are inefficiently replenished despite being translated robustly
throughout adulthood. Using nucleoporins as a paradigm for long-term protein persistence,
we found that nuclear pore complexes (NPCs) are maintained over a cell’s life
through slow but finite exchange of even its most stable subcomplexes. This maintenance
is limited, however, as some nucleoporin levels decrease during aging, providing
a rationale for the previously observed age-dependent deterioration of NPC function.
Our identification of a long-lived proteome reveals cellular components that are
at increased risk for damage accumulation, linking long-term protein persistence
to the cellular aging process.
article_processing_charge: No
article_type: original
author:
- first_name: Brandon H.
full_name: Toyama, Brandon H.
last_name: Toyama
- first_name: Jeffrey N.
full_name: Savas, Jeffrey N.
last_name: Savas
- first_name: Sung Kyu
full_name: Park, Sung Kyu
last_name: Park
- first_name: Michael S.
full_name: Harris, Michael S.
last_name: Harris
- first_name: Nicholas T.
full_name: Ingolia, Nicholas T.
last_name: Ingolia
- first_name: John R.
full_name: Yates, John R.
last_name: Yates
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
citation:
ama: Toyama BH, Savas JN, Park SK, et al. Identification of long-lived proteins
reveals exceptional stability of essential cellular structures. Cell. 2013;154(5):971-982.
doi:10.1016/j.cell.2013.07.037
apa: Toyama, B. H., Savas, J. N., Park, S. K., Harris, M. S., Ingolia, N. T., Yates,
J. R., & Hetzer, M. (2013). Identification of long-lived proteins reveals
exceptional stability of essential cellular structures. Cell. Elsevier.
https://doi.org/10.1016/j.cell.2013.07.037
chicago: Toyama, Brandon H., Jeffrey N. Savas, Sung Kyu Park, Michael S. Harris,
Nicholas T. Ingolia, John R. Yates, and Martin Hetzer. “Identification of Long-Lived
Proteins Reveals Exceptional Stability of Essential Cellular Structures.” Cell.
Elsevier, 2013. https://doi.org/10.1016/j.cell.2013.07.037.
ieee: B. H. Toyama et al., “Identification of long-lived proteins reveals
exceptional stability of essential cellular structures,” Cell, vol. 154,
no. 5. Elsevier, pp. 971–982, 2013.
ista: Toyama BH, Savas JN, Park SK, Harris MS, Ingolia NT, Yates JR, Hetzer M. 2013.
Identification of long-lived proteins reveals exceptional stability of essential
cellular structures. Cell. 154(5), 971–982.
mla: Toyama, Brandon H., et al. “Identification of Long-Lived Proteins Reveals Exceptional
Stability of Essential Cellular Structures.” Cell, vol. 154, no. 5, Elsevier,
2013, pp. 971–82, doi:10.1016/j.cell.2013.07.037.
short: B.H. Toyama, J.N. Savas, S.K. Park, M.S. Harris, N.T. Ingolia, J.R. Yates,
M. Hetzer, Cell 154 (2013) 971–982.
date_created: 2022-04-07T07:51:08Z
date_published: 2013-08-29T00:00:00Z
date_updated: 2022-07-18T08:50:47Z
day: '29'
doi: 10.1016/j.cell.2013.07.037
extern: '1'
external_id:
pmid:
- '23993091'
intvolume: ' 154'
issue: '5'
keyword:
- General Biochemistry
- Genetics and Molecular Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.cell.2013.07.037
month: '08'
oa: 1
oa_version: Published Version
page: 971-982
pmid: 1
publication: Cell
publication_identifier:
issn:
- 0092-8674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Identification of long-lived proteins reveals exceptional stability of essential
cellular structures
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 154
year: '2013'
...
---
_id: '11088'
abstract:
- lang: eng
text: 'The crowded intracellular environment poses a formidable challenge to experimental
and theoretical analyses of intracellular transport mechanisms. Our measurements
of single-particle trajectories in cytoplasm and their random-walk interpretations
elucidate two of these mechanisms: molecular diffusion in crowded environments
and cytoskeletal transport along microtubules. We employed acousto-optic deflector
microscopy to map out the three-dimensional trajectories of microspheres migrating
in the cytosolic fraction of a cellular extract. Classical Brownian motion (BM),
continuous time random walk, and fractional BM were alternatively used to represent
these trajectories. The comparison of the experimental and numerical data demonstrates
that cytoskeletal transport along microtubules and diffusion in the cytosolic
fraction exhibit anomalous (nonFickian) behavior and posses statistically distinct
signatures. Among the three random-walk models used, continuous time random walk
provides the best representation of diffusion, whereas microtubular transport
is accurately modeled with fractional BM.'
article_processing_charge: No
article_type: original
author:
- first_name: Benjamin M.
full_name: Regner, Benjamin M.
last_name: Regner
- first_name: Dejan
full_name: Vučinić, Dejan
last_name: Vučinić
- first_name: Cristina
full_name: Domnisoru, Cristina
last_name: Domnisoru
- first_name: Thomas M.
full_name: Bartol, Thomas M.
last_name: Bartol
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
- first_name: Daniel M.
full_name: Tartakovsky, Daniel M.
last_name: Tartakovsky
- first_name: Terrence J.
full_name: Sejnowski, Terrence J.
last_name: Sejnowski
citation:
ama: Regner BM, Vučinić D, Domnisoru C, et al. Anomalous diffusion of single particles
in cytoplasm. Biophysical Journal. 2013;104(8):1652-1660. doi:10.1016/j.bpj.2013.01.049
apa: Regner, B. M., Vučinić, D., Domnisoru, C., Bartol, T. M., Hetzer, M., Tartakovsky,
D. M., & Sejnowski, T. J. (2013). Anomalous diffusion of single particles
in cytoplasm. Biophysical Journal. Elsevier. https://doi.org/10.1016/j.bpj.2013.01.049
chicago: Regner, Benjamin M., Dejan Vučinić, Cristina Domnisoru, Thomas M. Bartol,
Martin Hetzer, Daniel M. Tartakovsky, and Terrence J. Sejnowski. “Anomalous Diffusion
of Single Particles in Cytoplasm.” Biophysical Journal. Elsevier, 2013.
https://doi.org/10.1016/j.bpj.2013.01.049.
ieee: B. M. Regner et al., “Anomalous diffusion of single particles in cytoplasm,”
Biophysical Journal, vol. 104, no. 8. Elsevier, pp. 1652–1660, 2013.
ista: Regner BM, Vučinić D, Domnisoru C, Bartol TM, Hetzer M, Tartakovsky DM, Sejnowski
TJ. 2013. Anomalous diffusion of single particles in cytoplasm. Biophysical Journal.
104(8), 1652–1660.
mla: Regner, Benjamin M., et al. “Anomalous Diffusion of Single Particles in Cytoplasm.”
Biophysical Journal, vol. 104, no. 8, Elsevier, 2013, pp. 1652–60, doi:10.1016/j.bpj.2013.01.049.
short: B.M. Regner, D. Vučinić, C. Domnisoru, T.M. Bartol, M. Hetzer, D.M. Tartakovsky,
T.J. Sejnowski, Biophysical Journal 104 (2013) 1652–1660.
date_created: 2022-04-07T07:51:26Z
date_published: 2013-04-16T00:00:00Z
date_updated: 2022-07-18T08:51:01Z
day: '16'
doi: 10.1016/j.bpj.2013.01.049
extern: '1'
external_id:
pmid:
- '23601312'
intvolume: ' 104'
issue: '8'
keyword:
- Biophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.bpj.2013.01.049
month: '04'
oa: 1
oa_version: Published Version
page: 1652-1660
pmid: 1
publication: Biophysical Journal
publication_identifier:
issn:
- 0006-3495
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Anomalous diffusion of single particles in cytoplasm
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 104
year: '2013'
...
---
_id: '11520'
abstract:
- lang: eng
text: We present the spatially resolved Hα dynamics of 16 star-forming galaxies
at z ∼ 0.81 using the new KMOS multi-object integral field spectrograph on the
ESO Very Large Telescope. These galaxies, selected using 1.18 μm narrowband imaging
from the 10 deg2 CFHT-HiZELS survey of the SA 22 hr field, are found in a ∼4 Mpc
overdensity of Hα emitters and likely reside in a group/intermediate environment,
but not a cluster. We confirm and identify a rich group of star-forming galaxies
at z = 0.813 ± 0.003, with 13 galaxies within 1000 km s−1 of each other, and seven
within a diameter of 3 Mpc. All of our galaxies are “typical” star-forming galaxies
at their redshift, 0.8 ± 0.4 SFR$^*_{z = 0.8}$, spanning a range of specific star
formation rates (sSFRs) of 0.2–1.1 Gyr−1 and have a median metallicity very close
to solar of 12 + log(O/H) = 8.62 ± 0.06. We measure the spatially resolved Hα
dynamics of the galaxies in our sample and show that 13 out of 16 galaxies can
be described by rotating disks and use the data to derive inclination corrected
rotation speeds of 50–275 km s−1. The fraction of disks within our sample is 75%
± 8%, consistent with previous results based on Hubble Space Telescope morphologies
of Hα-selected galaxies at z ∼ 1 and confirming that disks dominate the SFR density
at z ∼ 1. Our Hα galaxies are well fitted by the z ∼ 1–2 Tully–Fisher (TF) relation,
confirming the evolution seen in the zero point. Apart from having, on average,
higher stellar masses and lower sSFRs, our group galaxies at z = 0.81 present
the same mass–metallicity and TF relation as z ∼ 1 field galaxies and are all
disk galaxies.
acknowledgement: 'We thank the referee for many helpful comments and suggestions which
greatly improved the clarity and quality of this work. D.S. acknowledges financial
support from the Netherlands Organisation for Scientific research (NWO) through
a Veni fellowship and also funding from the European Community Seventh Framework
Programme (FP7/2007-2013) under grant agreement number RG226604 (OPTICON) which
allowed access to CFHT time (proposals: 11BO29 & 12AO19). A.M.S. gratefully acknowledges
an STFC Advanced Fellowship through grant number ST/H005234/1. I.R.S., J.P.S., and
R.G.B. acknowledge support from the UK Science and Technology Facilities Council
(STFC) under ST/I001573/1. I.R.S. acknowledges STFC (ST/J001422/1), the ERC Advanced
Investigator program DUSTYGAL and a Royal Society/Wolfson Merit Award. P.N.B. acknowledges
support from STFC. R.M.S. acknowledges support from the grant ST/1001573/1. The
data presented here are based on observations with the KMOS spectrograph on the
ESO/VLT under program 60.A-9460 and can be accessed through the ESO data archive.
The authors also wish to acknowledge the help from Michael Hilker in preparing the
KMOS observations.'
article_number: '139'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: D.
full_name: Sobral, D.
last_name: Sobral
- first_name: A. M.
full_name: Swinbank, A. M.
last_name: Swinbank
- first_name: J. P.
full_name: Stott, J. P.
last_name: Stott
- first_name: Jorryt J
full_name: Matthee, Jorryt J
id: 7439a258-f3c0-11ec-9501-9df22fe06720
last_name: Matthee
orcid: 0000-0003-2871-127X
- first_name: R. G.
full_name: Bower, R. G.
last_name: Bower
- first_name: Ian
full_name: Smail, Ian
last_name: Smail
- first_name: P.
full_name: Best, P.
last_name: Best
- first_name: J. E.
full_name: Geach, J. E.
last_name: Geach
- first_name: R. M.
full_name: Sharples, R. M.
last_name: Sharples
citation:
ama: Sobral D, Swinbank AM, Stott JP, et al. The dynamics of z=0.8 H-alpha-selected
star-forming galaxies from KMOS/CF-HiZELS. The Astrophysical Journal. 2013;779(2).
doi:10.1088/0004-637x/779/2/139
apa: Sobral, D., Swinbank, A. M., Stott, J. P., Matthee, J. J., Bower, R. G., Smail,
I., … Sharples, R. M. (2013). The dynamics of z=0.8 H-alpha-selected star-forming
galaxies from KMOS/CF-HiZELS. The Astrophysical Journal. IOP Publishing.
https://doi.org/10.1088/0004-637x/779/2/139
chicago: Sobral, D., A. M. Swinbank, J. P. Stott, Jorryt J Matthee, R. G. Bower,
Ian Smail, P. Best, J. E. Geach, and R. M. Sharples. “The Dynamics of Z=0.8 H-Alpha-Selected
Star-Forming Galaxies from KMOS/CF-HiZELS.” The Astrophysical Journal.
IOP Publishing, 2013. https://doi.org/10.1088/0004-637x/779/2/139.
ieee: D. Sobral et al., “The dynamics of z=0.8 H-alpha-selected star-forming
galaxies from KMOS/CF-HiZELS,” The Astrophysical Journal, vol. 779, no.
2. IOP Publishing, 2013.
ista: Sobral D, Swinbank AM, Stott JP, Matthee JJ, Bower RG, Smail I, Best P, Geach
JE, Sharples RM. 2013. The dynamics of z=0.8 H-alpha-selected star-forming galaxies
from KMOS/CF-HiZELS. The Astrophysical Journal. 779(2), 139.
mla: Sobral, D., et al. “The Dynamics of Z=0.8 H-Alpha-Selected Star-Forming Galaxies
from KMOS/CF-HiZELS.” The Astrophysical Journal, vol. 779, no. 2, 139,
IOP Publishing, 2013, doi:10.1088/0004-637x/779/2/139.
short: D. Sobral, A.M. Swinbank, J.P. Stott, J.J. Matthee, R.G. Bower, I. Smail,
P. Best, J.E. Geach, R.M. Sharples, The Astrophysical Journal 779 (2013).
date_created: 2022-07-07T09:14:48Z
date_published: 2013-12-03T00:00:00Z
date_updated: 2022-08-18T10:43:07Z
day: '03'
doi: 10.1088/0004-637x/779/2/139
extern: '1'
external_id:
arxiv:
- '1310.3822'
intvolume: ' 779'
issue: '2'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- 'galaxies: evolution – galaxies'
- high-redshift – galaxies
- starburst
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1310.3822
month: '12'
oa: 1
oa_version: Preprint
publication: The Astrophysical Journal
publication_identifier:
eissn:
- 1538-4357
issn:
- 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: The dynamics of z=0.8 H-alpha-selected star-forming galaxies from KMOS/CF-HiZELS
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 779
year: '2013'
...
---
_id: '11759'
abstract:
- lang: eng
text: Matching markets play a prominent role in economic theory. A prime example
of such a market is the sponsored search market. Here, as in other markets of
that kind, market equilibria correspond to feasible, envy free, and bidder optimal
outcomes. For settings without budgets such an outcome always exists and can be
computed in polynomial-time by the so-called Hungarian Method. Moreover, every
mechanism that computes such an outcome is incentive compatible. We show that
the Hungarian Method can be modified so that it finds a feasible, envy free, and
bidder optimal outcome for settings with budgets. We also show that in settings
with budgets no mechanism that computes such an outcome can be incentive compatible
for all inputs. For inputs in general position, however, the presented mechanism—as
any other mechanism that computes such an outcome for settings with budgets—is
incentive compatible.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Paul
full_name: Dütting, Paul
last_name: Dütting
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
- first_name: Ingmar
full_name: Weber, Ingmar
last_name: Weber
citation:
ama: Dütting P, Henzinger MH, Weber I. Sponsored search, market equilibria, and
the Hungarian Method. Information Processing Letters. 2013;113(3):67-73.
doi:10.1016/j.ipl.2012.11.006
apa: Dütting, P., Henzinger, M. H., & Weber, I. (2013). Sponsored search, market
equilibria, and the Hungarian Method. Information Processing Letters. Elsevier.
https://doi.org/10.1016/j.ipl.2012.11.006
chicago: Dütting, Paul, Monika H Henzinger, and Ingmar Weber. “Sponsored Search,
Market Equilibria, and the Hungarian Method.” Information Processing Letters.
Elsevier, 2013. https://doi.org/10.1016/j.ipl.2012.11.006.
ieee: P. Dütting, M. H. Henzinger, and I. Weber, “Sponsored search, market equilibria,
and the Hungarian Method,” Information Processing Letters, vol. 113, no.
3. Elsevier, pp. 67–73, 2013.
ista: Dütting P, Henzinger MH, Weber I. 2013. Sponsored search, market equilibria,
and the Hungarian Method. Information Processing Letters. 113(3), 67–73.
mla: Dütting, Paul, et al. “Sponsored Search, Market Equilibria, and the Hungarian
Method.” Information Processing Letters, vol. 113, no. 3, Elsevier, 2013,
pp. 67–73, doi:10.1016/j.ipl.2012.11.006.
short: P. Dütting, M.H. Henzinger, I. Weber, Information Processing Letters 113
(2013) 67–73.
date_created: 2022-08-08T11:29:08Z
date_published: 2013-02-15T00:00:00Z
date_updated: 2022-09-12T09:36:15Z
day: '15'
doi: 10.1016/j.ipl.2012.11.006
extern: '1'
external_id:
arxiv:
- '0912.1934'
intvolume: ' 113'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/0912.1934
month: '02'
oa: 1
oa_version: Preprint
page: 67-73
publication: Information Processing Letters
publication_identifier:
issn:
- 0020-0190
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sponsored search, market equilibria, and the Hungarian Method
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 113
year: '2013'
...
---
_id: '11791'
abstract:
- lang: eng
text: The focus of classic mechanism design has been on truthful direct-revelation
mechanisms. In the context of combinatorial auctions the truthful direct-revelation
mechanism that maximizes social welfare is the VCG mechanism. For many valuation
spaces computing the allocation and payments of the VCG mechanism, however, is
a computationally hard problem. We thus study the performance of the VCG mechanism
when bidders are forced to choose bids from a subspace of the valuation space
for which the VCG outcome can be computed efficiently. We prove improved upper
bounds on the welfare loss for restrictions to additive bids and upper and lower
bounds for restrictions to non-additive bids. These bounds show that the welfare
loss increases in expressiveness. All our bounds apply to equilibrium concepts
that can be computed in polynomial time as well as to learning outcomes.
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Paul
full_name: Dütting, Paul
last_name: Dütting
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
- first_name: Martin
full_name: Starnberger, Martin
last_name: Starnberger
citation:
ama: 'Dütting P, Henzinger MH, Starnberger M. Valuation compressions in VCG-based
combinatorial auctions. In: 9th International Conference on Web and Internet
Economics. Vol 8289. Springer Nature; 2013:146–159. doi:10.1007/978-3-642-45046-4_13'
apa: 'Dütting, P., Henzinger, M. H., & Starnberger, M. (2013). Valuation compressions
in VCG-based combinatorial auctions. In 9th International Conference on Web
and Internet Economics (Vol. 8289, pp. 146–159). Cambridge, MA, USA: Springer
Nature. https://doi.org/10.1007/978-3-642-45046-4_13'
chicago: Dütting, Paul, Monika H Henzinger, and Martin Starnberger. “Valuation Compressions
in VCG-Based Combinatorial Auctions.” In 9th International Conference on Web
and Internet Economics, 8289:146–159. Springer Nature, 2013. https://doi.org/10.1007/978-3-642-45046-4_13.
ieee: P. Dütting, M. H. Henzinger, and M. Starnberger, “Valuation compressions in
VCG-based combinatorial auctions,” in 9th International Conference on Web and
Internet Economics, Cambridge, MA, USA, 2013, vol. 8289, pp. 146–159.
ista: 'Dütting P, Henzinger MH, Starnberger M. 2013. Valuation compressions in VCG-based
combinatorial auctions. 9th International Conference on Web and Internet Economics.
WINE: International Conference on Web and Internet Economics, LNCS, vol. 8289,
146–159.'
mla: Dütting, Paul, et al. “Valuation Compressions in VCG-Based Combinatorial Auctions.”
9th International Conference on Web and Internet Economics, vol. 8289,
Springer Nature, 2013, pp. 146–159, doi:10.1007/978-3-642-45046-4_13.
short: P. Dütting, M.H. Henzinger, M. Starnberger, in:, 9th International Conference
on Web and Internet Economics, Springer Nature, 2013, pp. 146–159.
conference:
end_date: 2013-12-14
location: Cambridge, MA, USA
name: 'WINE: International Conference on Web and Internet Economics'
start_date: 2013-12-01
date_created: 2022-08-11T11:05:14Z
date_published: 2013-12-01T00:00:00Z
date_updated: 2023-02-13T11:20:42Z
day: '01'
doi: 10.1007/978-3-642-45046-4_13
extern: '1'
external_id:
arxiv:
- '1310.3153'
intvolume: ' 8289'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1310.3153
month: '12'
oa: 1
oa_version: Preprint
page: 146–159
publication: 9th International Conference on Web and Internet Economics
publication_identifier:
isbn:
- '9783642450457'
issn:
- 1611-3349
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Valuation compressions in VCG-based combinatorial auctions
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8289
year: '2013'
...
---
_id: '11792'
abstract:
- lang: eng
text: "We study the problem of maximizing a monotone submodular function with viability
constraints. This problem originates from computational biology, where we are
given a phylogenetic tree over a set of species and a directed graph, the so-called
food web, encoding viability constraints between these species. These food webs
usually have constant depth. The goal is to select a subset of k species that
satisfies the viability constraints and has maximal phylogenetic diversity. As
this problem is known to be NP-hard, we investigate approximation algorithm. We
present the first constant factor approximation algorithm if the depth is constant.
Its approximation ratio is (1−1\U0001D452√). This algorithm not only applies to
phylogenetic trees with viability constraints but for arbitrary monotone submodular
set functions with viability constraints. Second, we show that there is no (1 − 1/e + ε)-approximation
algorithm for our problem setting (even for additive functions) and that there
is no approximation algorithm for a slight extension of this setting."
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Wolfgang
full_name: Dvořák, Wolfgang
last_name: Dvořák
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
- first_name: David P.
full_name: Williamson, David P.
last_name: Williamson
citation:
ama: 'Dvořák W, Henzinger MH, Williamson DP. Maximizing a submodular function with
viability constraints. In: 21st Annual European Symposium on Algorithms.
Vol 8125. Springer Nature; 2013:409-420. doi:10.1007/978-3-642-40450-4_35'
apa: 'Dvořák, W., Henzinger, M. H., & Williamson, D. P. (2013). Maximizing a
submodular function with viability constraints. In 21st Annual European Symposium
on Algorithms (Vol. 8125, pp. 409–420). Sophia Antipolis, France: Springer
Nature. https://doi.org/10.1007/978-3-642-40450-4_35'
chicago: Dvořák, Wolfgang, Monika H Henzinger, and David P. Williamson. “Maximizing
a Submodular Function with Viability Constraints.” In 21st Annual European
Symposium on Algorithms, 8125:409–20. Springer Nature, 2013. https://doi.org/10.1007/978-3-642-40450-4_35.
ieee: W. Dvořák, M. H. Henzinger, and D. P. Williamson, “Maximizing a submodular
function with viability constraints,” in 21st Annual European Symposium on
Algorithms, Sophia Antipolis, France, 2013, vol. 8125, pp. 409–420.
ista: 'Dvořák W, Henzinger MH, Williamson DP. 2013. Maximizing a submodular function
with viability constraints. 21st Annual European Symposium on Algorithms. ESA:
European Symposium on Algorithms, LNCS, vol. 8125, 409–420.'
mla: Dvořák, Wolfgang, et al. “Maximizing a Submodular Function with Viability Constraints.”
21st Annual European Symposium on Algorithms, vol. 8125, Springer Nature,
2013, pp. 409–20, doi:10.1007/978-3-642-40450-4_35.
short: W. Dvořák, M.H. Henzinger, D.P. Williamson, in:, 21st Annual European Symposium
on Algorithms, Springer Nature, 2013, pp. 409–420.
conference:
end_date: 2013-09-04
location: Sophia Antipolis, France
name: 'ESA: European Symposium on Algorithms'
start_date: 2013-09-02
date_created: 2022-08-11T11:18:19Z
date_published: 2013-09-01T00:00:00Z
date_updated: 2023-02-21T16:28:24Z
day: '01'
doi: 10.1007/978-3-642-40450-4_35
extern: '1'
external_id:
arxiv:
- '1611.05753'
intvolume: ' 8125'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1611.05753
month: '09'
oa: 1
oa_version: Preprint
page: 409 - 420
publication: 21st Annual European Symposium on Algorithms
publication_identifier:
isbn:
- '9783642404498'
issn:
- 1611-3349
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
record:
- id: '11792'
relation: later_version
status: public
scopus_import: '1'
status: public
title: Maximizing a submodular function with viability constraints
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8125
year: '2013'
...
---
_id: '11793'
abstract:
- lang: eng
text: "We study the problem of maintaining a breadth-first spanning tree (BFS tree)
in partially dynamic distributed networks modeling a sequence of either failures
or additions of communication links (but not both). We show (1 + ε)-approximation
algorithms whose amortized time (over some number of link changes) is sublinear
in D, the maximum diameter of the network. This breaks the Θ(D) time bound of
recomputing “from scratch”.\r\n\r\nOur technique also leads to a (1 + ε)-approximate
incremental algorithm for single-source shortest paths (SSSP) in the sequential
(usual RAM) model. Prior to our work, the state of the art was the classic exact
algorithm of [9] that is optimal under some assumptions [27]. Our result is the
first to show that, in the incremental setting, this bound can be beaten in certain
cases if a small approximation is allowed."
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
- first_name: Sebastian
full_name: Krinninger, Sebastian
last_name: Krinninger
- first_name: Danupon
full_name: Nanongkai, Danupon
last_name: Nanongkai
citation:
ama: 'Henzinger MH, Krinninger S, Nanongkai D. Sublinear-time maintenance of breadth-first
spanning tree in partially dynamic networks. In: 40th International Colloquium
on Automata, Languages, and Programming. Vol 7966. Springer Nature; 2013:607–619.
doi:10.1007/978-3-642-39212-2_53'
apa: 'Henzinger, M. H., Krinninger, S., & Nanongkai, D. (2013). Sublinear-time
maintenance of breadth-first spanning tree in partially dynamic networks. In 40th
International Colloquium on Automata, Languages, and Programming (Vol. 7966,
pp. 607–619). Riga, Latvia: Springer Nature. https://doi.org/10.1007/978-3-642-39212-2_53'
chicago: Henzinger, Monika H, Sebastian Krinninger, and Danupon Nanongkai. “Sublinear-Time
Maintenance of Breadth-First Spanning Tree in Partially Dynamic Networks.” In
40th International Colloquium on Automata, Languages, and Programming,
7966:607–619. Springer Nature, 2013. https://doi.org/10.1007/978-3-642-39212-2_53.
ieee: M. H. Henzinger, S. Krinninger, and D. Nanongkai, “Sublinear-time maintenance
of breadth-first spanning tree in partially dynamic networks,” in 40th International
Colloquium on Automata, Languages, and Programming, Riga, Latvia, 2013, vol.
7966, pp. 607–619.
ista: 'Henzinger MH, Krinninger S, Nanongkai D. 2013. Sublinear-time maintenance
of breadth-first spanning tree in partially dynamic networks. 40th International
Colloquium on Automata, Languages, and Programming. ICALP: International Colloquium
on Automata, Languages, and Programming, LNCS, vol. 7966, 607–619.'
mla: Henzinger, Monika H., et al. “Sublinear-Time Maintenance of Breadth-First Spanning
Tree in Partially Dynamic Networks.” 40th International Colloquium on Automata,
Languages, and Programming, vol. 7966, Springer Nature, 2013, pp. 607–619,
doi:10.1007/978-3-642-39212-2_53.
short: M.H. Henzinger, S. Krinninger, D. Nanongkai, in:, 40th International Colloquium
on Automata, Languages, and Programming, Springer Nature, 2013, pp. 607–619.
conference:
end_date: 2013-07-12
location: Riga, Latvia
name: 'ICALP: International Colloquium on Automata, Languages, and Programming'
start_date: 2013-07-08
date_created: 2022-08-11T11:25:13Z
date_published: 2013-07-01T00:00:00Z
date_updated: 2023-02-21T16:28:26Z
day: '01'
doi: 10.1007/978-3-642-39212-2_53
extern: '1'
external_id:
arxiv:
- '1512.08147'
intvolume: ' 7966'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1512.08147
month: '07'
oa: 1
oa_version: Preprint
page: 607–619
publication: 40th International Colloquium on Automata, Languages, and Programming
publication_identifier:
isbn:
- '9783642392115'
issn:
- 1611-3349
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
record:
- id: '11793'
relation: later_version
status: public
scopus_import: '1'
status: public
title: Sublinear-time maintenance of breadth-first spanning tree in partially dynamic
networks
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7966
year: '2013'
...
---
_id: '8030'
abstract:
- lang: eng
text: While the plasticity of excitatory synaptic connections in the brain has been
widely studied, the plasticity of inhibitory connections is much less understood.
Here, we present recent experimental and theoretical findings concerning the rules
of spike timing-dependent inhibitory plasticity and their putative network function.
This is a summary of a workshop at the COSYNE conference 2012.
article_number: '119'
article_processing_charge: No
article_type: original
author:
- first_name: Tim P
full_name: Vogels, Tim P
id: CB6FF8D2-008F-11EA-8E08-2637E6697425
last_name: Vogels
orcid: 0000-0003-3295-6181
- first_name: R. C.
full_name: Froemke, R. C.
last_name: Froemke
- first_name: N.
full_name: Doyon, N.
last_name: Doyon
- first_name: M.
full_name: Gilson, M.
last_name: Gilson
- first_name: J. S.
full_name: Haas, J. S.
last_name: Haas
- first_name: R.
full_name: Liu, R.
last_name: Liu
- first_name: A.
full_name: Maffei, A.
last_name: Maffei
- first_name: P.
full_name: Miller, P.
last_name: Miller
- first_name: C. J.
full_name: Wierenga, C. J.
last_name: Wierenga
- first_name: M. A.
full_name: Woodin, M. A.
last_name: Woodin
- first_name: F.
full_name: Zenke, F.
last_name: Zenke
- first_name: H.
full_name: Sprekeler, H.
last_name: Sprekeler
citation:
ama: 'Vogels TP, Froemke RC, Doyon N, et al. Inhibitory synaptic plasticity: Spike
timing-dependence and putative network function. Frontiers in Neural Circuits.
2013;7. doi:10.3389/fncir.2013.00119'
apa: 'Vogels, T. P., Froemke, R. C., Doyon, N., Gilson, M., Haas, J. S., Liu, R.,
… Sprekeler, H. (2013). Inhibitory synaptic plasticity: Spike timing-dependence
and putative network function. Frontiers in Neural Circuits. Frontiers
Media. https://doi.org/10.3389/fncir.2013.00119'
chicago: 'Vogels, Tim P, R. C. Froemke, N. Doyon, M. Gilson, J. S. Haas, R. Liu,
A. Maffei, et al. “Inhibitory Synaptic Plasticity: Spike Timing-Dependence and
Putative Network Function.” Frontiers in Neural Circuits. Frontiers Media,
2013. https://doi.org/10.3389/fncir.2013.00119.'
ieee: 'T. P. Vogels et al., “Inhibitory synaptic plasticity: Spike timing-dependence
and putative network function,” Frontiers in Neural Circuits, vol. 7. Frontiers
Media, 2013.'
ista: 'Vogels TP, Froemke RC, Doyon N, Gilson M, Haas JS, Liu R, Maffei A, Miller
P, Wierenga CJ, Woodin MA, Zenke F, Sprekeler H. 2013. Inhibitory synaptic plasticity:
Spike timing-dependence and putative network function. Frontiers in Neural Circuits.
7, 119.'
mla: 'Vogels, Tim P., et al. “Inhibitory Synaptic Plasticity: Spike Timing-Dependence
and Putative Network Function.” Frontiers in Neural Circuits, vol. 7, 119,
Frontiers Media, 2013, doi:10.3389/fncir.2013.00119.'
short: T.P. Vogels, R.C. Froemke, N. Doyon, M. Gilson, J.S. Haas, R. Liu, A. Maffei,
P. Miller, C.J. Wierenga, M.A. Woodin, F. Zenke, H. Sprekeler, Frontiers in Neural
Circuits 7 (2013).
date_created: 2020-06-25T13:23:50Z
date_published: 2013-07-18T00:00:00Z
date_updated: 2021-01-12T08:16:38Z
day: '18'
ddc:
- '570'
doi: 10.3389/fncir.2013.00119
extern: '1'
external_id:
pmid:
- '23882186'
file:
- access_level: open_access
checksum: 9c321cb12977d84048712eefa7f0c497
content_type: application/pdf
creator: cziletti
date_created: 2020-07-16T11:23:40Z
date_updated: 2020-07-16T11:23:40Z
file_id: '8123'
file_name: 2013_FrontNeurCirc_Vogels.pdf
file_size: 1530469
relation: main_file
success: 1
file_date_updated: 2020-07-16T11:23:40Z
has_accepted_license: '1'
intvolume: ' 7'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: Frontiers in Neural Circuits
publication_identifier:
eissn:
- 1662-5110
publication_status: published
publisher: Frontiers Media
quality_controlled: '1'
status: public
title: 'Inhibitory synaptic plasticity: Spike timing-dependence and putative network
function'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
short: CC BY (3.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2013'
...
---
_id: '8245'
abstract:
- lang: eng
text: "Background: Monoclonal antibodies (mAb), such as trastuzumab are a valuable
addition to breast cancer therapy.\r\nData obtained from neoadjuvant settings
revealed that antibody-dependent cell-mediated cytotoxicity (ADCC) is a\r\nmajor
mechanism of action for the mAb trastuzumab. Conflicting results still call into
question whether disease\r\nprogression, prolonged treatment or concomitant chemotherapy
influences ADCC and related immunological\r\nphenomena.\r\nMethods: We analyzed
the activity of ADCC and antibody-dependent cell-mediated phagocytosis (ADCP)
of\r\nperipheral blood mononuclear cells (PBMCs) from human epidermal growth factor
receptor 2 (HER2/neu) positive\r\nbreast cancer patients receiving trastuzumab
therapy either in an adjuvant (n = 13) or metastatic (n = 15) setting as\r\nwell
as from trastuzumab treatment-naive (t-naive) HER2/neu negative patients (n =
15). PBMCs from healthy volunteers\r\n(n = 24) were used as controls. ADCC and
ADCP activity was correlated with the expression of antibody binding\r\nFc-gamma
receptor (FcγR)I (CD64), FcγRII (CD32) and FcγRIII (CD16) on CD14+ (monocytes)
and CD56+ (NK) cells, as well as the expression of CD107a+ (LAMP-1) on CD56+ cells
and the total amount of CD4+CD25+FOXP3+ (Treg) cells. In metastatic patients,
markers were correlated with progression-free survival (PFS).\r\nResults: ADCC
activity was significantly down regulated in metastatic, adjuvant and t-naive
patient cohorts as compared to healthy controls. Reduced ADCC activity was inversely
correlated with the expression of CD107a on CD56+\r\ncells in adjuvant patients.
ADCC and ADCP activity of the patient cohorts were similar, regardless of treatment
duration\r\nor additional chemotherapy. PFS in metastatic patients inversely correlated
with the number of peripheral Treg cells.\r\nConclusion: The reduction of ADCC
in patients as compared to healthy controls calls for adjuvant strategies, such
as\r\nimmune-enhancing agents, to improve the activity of trastuzumab. However,
efficacy of trastuzumab-specific ADCC\r\nand ADCP appears not to be affected by
treatment duration, disease progression or concomitant chemotherapy. This\r\nfinding
supports the application of trastuzumab at any stage of the disease."
article_number: '307'
article_processing_charge: No
author:
- first_name: Branka
full_name: Petricevic, Branka
last_name: Petricevic
- first_name: Johannes
full_name: Laengle, Johannes
last_name: Laengle
- first_name: Josef
full_name: Singer, Josef
last_name: Singer
- first_name: Monika
full_name: Sachet, Monika
last_name: Sachet
- first_name: Judit
full_name: Fazekas, Judit
id: 36432834-F248-11E8-B48F-1D18A9856A87
last_name: Fazekas
orcid: 0000-0002-8777-3502
- first_name: Guenther
full_name: Steger, Guenther
last_name: Steger
- first_name: Rupert
full_name: Bartsch, Rupert
last_name: Bartsch
- first_name: Erika
full_name: Jensen-Jarolim, Erika
last_name: Jensen-Jarolim
- first_name: Michael
full_name: Bergmann, Michael
last_name: Bergmann
citation:
ama: Petricevic B, Laengle J, Singer J, et al. Trastuzumab mediates antibody-dependent
cell-mediated cytotoxicity and phagocytosis to the same extent in both adjuvant
and metastatic HER2/neu breast cancer patients. Journal of Translational Medicine.
2013;11. doi:10.1186/1479-5876-11-307
apa: Petricevic, B., Laengle, J., Singer, J., Sachet, M., Singer, J., Steger, G.,
… Bergmann, M. (2013). Trastuzumab mediates antibody-dependent cell-mediated cytotoxicity
and phagocytosis to the same extent in both adjuvant and metastatic HER2/neu breast
cancer patients. Journal of Translational Medicine. Springer Nature. https://doi.org/10.1186/1479-5876-11-307
chicago: Petricevic, Branka, Johannes Laengle, Josef Singer, Monika Sachet, Judit
Singer, Guenther Steger, Rupert Bartsch, Erika Jensen-Jarolim, and Michael Bergmann.
“Trastuzumab Mediates Antibody-Dependent Cell-Mediated Cytotoxicity and Phagocytosis
to the Same Extent in Both Adjuvant and Metastatic HER2/Neu Breast Cancer Patients.”
Journal of Translational Medicine. Springer Nature, 2013. https://doi.org/10.1186/1479-5876-11-307.
ieee: B. Petricevic et al., “Trastuzumab mediates antibody-dependent cell-mediated
cytotoxicity and phagocytosis to the same extent in both adjuvant and metastatic
HER2/neu breast cancer patients,” Journal of Translational Medicine, vol.
11. Springer Nature, 2013.
ista: Petricevic B, Laengle J, Singer J, Sachet M, Singer J, Steger G, Bartsch R,
Jensen-Jarolim E, Bergmann M. 2013. Trastuzumab mediates antibody-dependent cell-mediated
cytotoxicity and phagocytosis to the same extent in both adjuvant and metastatic
HER2/neu breast cancer patients. Journal of Translational Medicine. 11, 307.
mla: Petricevic, Branka, et al. “Trastuzumab Mediates Antibody-Dependent Cell-Mediated
Cytotoxicity and Phagocytosis to the Same Extent in Both Adjuvant and Metastatic
HER2/Neu Breast Cancer Patients.” Journal of Translational Medicine, vol.
11, 307, Springer Nature, 2013, doi:10.1186/1479-5876-11-307.
short: B. Petricevic, J. Laengle, J. Singer, M. Sachet, J. Singer, G. Steger, R.
Bartsch, E. Jensen-Jarolim, M. Bergmann, Journal of Translational Medicine 11
(2013).
date_created: 2020-08-10T11:54:34Z
date_published: 2013-12-12T00:00:00Z
date_updated: 2022-08-25T14:52:39Z
day: '12'
ddc:
- '570'
doi: 10.1186/1479-5876-11-307
extern: '1'
external_id:
pmid:
- '24330813'
file:
- access_level: open_access
content_type: application/pdf
creator: dernst
date_created: 2020-08-10T13:45:19Z
date_updated: 2020-08-10T13:45:19Z
file_id: '8247'
file_name: 2013_JoTM_Petricevic.pdf
file_size: 777311
relation: main_file
success: 1
file_date_updated: 2020-08-10T13:45:19Z
has_accepted_license: '1'
intvolume: ' 11'
language:
- iso: eng
month: '12'
oa: 1
oa_version: None
pmid: 1
publication: Journal of Translational Medicine
publication_identifier:
issn:
- 1479-5876
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Trastuzumab mediates antibody-dependent cell-mediated cytotoxicity and phagocytosis
to the same extent in both adjuvant and metastatic HER2/neu breast cancer patients
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
short: CC BY (3.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2013'
...
---
_id: '827'
abstract:
- lang: eng
text: As sessile organisms, plants have to be able to adapt to a continuously changing
environment. Plants that perceive some of these changes as stress signals activate
signaling pathways to modulate their development and to enable them to survive.
The complex responses to environmental cues are to a large extent mediated by
plant hormones that together orchestrate the final plant response. The phytohormone
cytokinin is involved in many plant developmental processes. Recently, it has
been established that cytokinin plays an important role in stress responses, but
does not act alone. Indeed, the hormonal control of plant development and stress
adaptation is the outcome of a complex network of multiple synergistic and antagonistic
interactions between various hormones. Here, we review the recent findings on
the cytokinin function as part of this hormonal network. We focus on the importance
of the crosstalk between cytokinin and other hormones, such as abscisic acid,
jasmonate, salicylic acid, ethylene, and auxin in the modulation of plant development
and stress adaptation. Finally, the impact of the current research in the biotechnological
industry will be discussed.
article_number: '451'
author:
- first_name: José
full_name: O'Brien, José
last_name: O'Brien
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
citation:
ama: O’Brien J, Benková E. Cytokinin cross talking during biotic and abiotic stress
responses. Frontiers in Plant Science. 2013;4. doi:10.3389/fpls.2013.00451
apa: O’Brien, J., & Benková, E. (2013). Cytokinin cross talking during biotic
and abiotic stress responses. Frontiers in Plant Science. Frontiers Research
Foundation. https://doi.org/10.3389/fpls.2013.00451
chicago: O’Brien, José, and Eva Benková. “Cytokinin Cross Talking during Biotic
and Abiotic Stress Responses.” Frontiers in Plant Science. Frontiers Research
Foundation, 2013. https://doi.org/10.3389/fpls.2013.00451.
ieee: J. O’Brien and E. Benková, “Cytokinin cross talking during biotic and abiotic
stress responses,” Frontiers in Plant Science, vol. 4. Frontiers Research
Foundation, 2013.
ista: O’Brien J, Benková E. 2013. Cytokinin cross talking during biotic and abiotic
stress responses. Frontiers in Plant Science. 4, 451.
mla: O’Brien, José, and Eva Benková. “Cytokinin Cross Talking during Biotic and
Abiotic Stress Responses.” Frontiers in Plant Science, vol. 4, 451, Frontiers
Research Foundation, 2013, doi:10.3389/fpls.2013.00451.
short: J. O’Brien, E. Benková, Frontiers in Plant Science 4 (2013).
date_created: 2018-12-11T11:48:43Z
date_published: 2013-11-19T00:00:00Z
date_updated: 2021-01-12T08:17:50Z
day: '19'
ddc:
- '580'
department:
- _id: EvBe
doi: 10.3389/fpls.2013.00451
ec_funded: 1
file:
- access_level: open_access
checksum: fdc25ddd1bf9a99b99f662cdbafeddd4
content_type: application/pdf
creator: dernst
date_created: 2019-01-31T10:40:38Z
date_updated: 2020-07-14T12:48:11Z
file_id: '5903'
file_name: 2013_FrontiersPlant_OBrien.pdf
file_size: 953299
relation: main_file
file_date_updated: 2020-07-14T12:48:11Z
has_accepted_license: '1'
intvolume: ' 4'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
project:
- _id: 253FCA6A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '207362'
name: Hormonal cross-talk in plant organogenesis
publication: Frontiers in Plant Science
publication_status: published
publisher: Frontiers Research Foundation
publist_id: '6821'
quality_controlled: '1'
scopus_import: 1
status: public
title: Cytokinin cross talking during biotic and abiotic stress responses
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 4
year: '2013'
...
---
_id: '828'
abstract:
- lang: eng
text: The plant root system is essential for providing anchorage to the soil, supplying
minerals and water, and synthesizing metabolites. It is a dynamic organ modulated
by external cues such as environmental signals, water and nutrients availability,
salinity and others. Lateral roots (LRs) are initiated from the primary root post-embryonically,
after which they progress through discrete developmental stages which can be independently
controlled, providing a high level of plasticity during root system formation.
Within this review, main contributions are presented, from the classical forward
genetic screens to the more recent high-throughput approaches, combined with computer
model predictions, dissecting how LRs and thereby root system architecture is
established and developed.
article_number: '537'
author:
- first_name: Candela
full_name: Cuesta, Candela
id: 33A3C818-F248-11E8-B48F-1D18A9856A87
last_name: Cuesta
orcid: 0000-0003-1923-2410
- first_name: Krzysztof T
full_name: Wabnik, Krzysztof T
id: 4DE369A4-F248-11E8-B48F-1D18A9856A87
last_name: Wabnik
orcid: 0000-0001-7263-0560
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
citation:
ama: Cuesta C, Wabnik KT, Benková E. Systems approaches to study root architecture
dynamics. Frontiers in Plant Science. 2013;4. doi:10.3389/fpls.2013.00537
apa: Cuesta, C., Wabnik, K. T., & Benková, E. (2013). Systems approaches to
study root architecture dynamics. Frontiers in Plant Science. Frontiers
Research Foundation. https://doi.org/10.3389/fpls.2013.00537
chicago: Cuesta, Candela, Krzysztof T Wabnik, and Eva Benková. “Systems Approaches
to Study Root Architecture Dynamics.” Frontiers in Plant Science. Frontiers
Research Foundation, 2013. https://doi.org/10.3389/fpls.2013.00537.
ieee: C. Cuesta, K. T. Wabnik, and E. Benková, “Systems approaches to study root
architecture dynamics,” Frontiers in Plant Science, vol. 4. Frontiers Research
Foundation, 2013.
ista: Cuesta C, Wabnik KT, Benková E. 2013. Systems approaches to study root architecture
dynamics. Frontiers in Plant Science. 4, 537.
mla: Cuesta, Candela, et al. “Systems Approaches to Study Root Architecture Dynamics.”
Frontiers in Plant Science, vol. 4, 537, Frontiers Research Foundation,
2013, doi:10.3389/fpls.2013.00537.
short: C. Cuesta, K.T. Wabnik, E. Benková, Frontiers in Plant Science 4 (2013).
date_created: 2018-12-11T11:48:43Z
date_published: 2013-12-26T00:00:00Z
date_updated: 2021-01-12T08:17:52Z
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ddc:
- '580'
department:
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doi: 10.3389/fpls.2013.00537
ec_funded: 1
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intvolume: ' 4'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: 253FCA6A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '207362'
name: Hormonal cross-talk in plant organogenesis
publication: Frontiers in Plant Science
publication_status: published
publisher: Frontiers Research Foundation
publist_id: '6820'
quality_controlled: '1'
scopus_import: 1
status: public
title: Systems approaches to study root architecture dynamics
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 4
year: '2013'
...
---
_id: '1759'
abstract:
- lang: eng
text: We report an electric-field-induced giant modulation of the hole g factor
in SiGe nanocrystals. The observed effect is ascribed to a so-far overlooked contribution
to the g factor that stems from the mixing between heavy- and light-hole wave
functions. We show that the relative displacement between the confined heavy-
and light-hole states, occurring upon application of the electric field, alters
their mixing strength leading to a strong nonmonotonic modulation of the g factor.
acknowledgement: We acknowledge financial support from the Nanosciences Foundation
(Grenoble, France), DOE under Contract No. DEFG02-08ER46482 (Yale), the Agence Nationale
de la Recherche, and the European Starting Grant. G. K. acknowledges support from
the European Commission via a Marie Curie Carrer Integration Grant and the FWF for
a Lise-Meitner Fellowship
author:
- first_name: Natalia
full_name: Ares, Natalia
last_name: Ares
- first_name: Vitaly
full_name: Golovach, Vitaly N
last_name: Golovach
- first_name: Georgios
full_name: Georgios Katsaros
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
- first_name: Mathieu
full_name: Stoffel, Mathieu
last_name: Stoffel
- first_name: Frank
full_name: Fournel, Frank
last_name: Fournel
- first_name: Leonid
full_name: Glazman, Leonid I
last_name: Glazman
- first_name: Oliver
full_name: Schmidt, Oliver G
last_name: Schmidt
- first_name: Silvano
full_name: De Franceschi, Silvano
last_name: De Franceschi
citation:
ama: Ares N, Golovach V, Katsaros G, et al. Nature of tunable hole g factors in
quantum dots. Physical Review Letters. 2013;110(4). doi:10.1103/PhysRevLett.110.046602
apa: Ares, N., Golovach, V., Katsaros, G., Stoffel, M., Fournel, F., Glazman, L.,
… De Franceschi, S. (2013). Nature of tunable hole g factors in quantum dots.
Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.110.046602
chicago: Ares, Natalia, Vitaly Golovach, Georgios Katsaros, Mathieu Stoffel, Frank
Fournel, Leonid Glazman, Oliver Schmidt, and Silvano De Franceschi. “Nature of
Tunable Hole g Factors in Quantum Dots.” Physical Review Letters. American
Physical Society, 2013. https://doi.org/10.1103/PhysRevLett.110.046602.
ieee: N. Ares et al., “Nature of tunable hole g factors in quantum dots,”
Physical Review Letters, vol. 110, no. 4. American Physical Society, 2013.
ista: Ares N, Golovach V, Katsaros G, Stoffel M, Fournel F, Glazman L, Schmidt O,
De Franceschi S. 2013. Nature of tunable hole g factors in quantum dots. Physical
Review Letters. 110(4).
mla: Ares, Natalia, et al. “Nature of Tunable Hole g Factors in Quantum Dots.” Physical
Review Letters, vol. 110, no. 4, American Physical Society, 2013, doi:10.1103/PhysRevLett.110.046602.
short: N. Ares, V. Golovach, G. Katsaros, M. Stoffel, F. Fournel, L. Glazman, O.
Schmidt, S. De Franceschi, Physical Review Letters 110 (2013).
date_created: 2018-12-11T11:53:51Z
date_published: 2013-01-23T00:00:00Z
date_updated: 2021-01-12T06:53:01Z
day: '23'
doi: 10.1103/PhysRevLett.110.046602
extern: 1
intvolume: ' 110'
issue: '4'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1208.0476
month: '01'
oa: 1
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '5365'
quality_controlled: 0
status: public
title: Nature of tunable hole g factors in quantum dots
type: journal_article
volume: 110
year: '2013'
...
---
_id: '1760'
abstract:
- lang: eng
text: We report on hole g-factor measurements in three terminal SiGe self-assembled
quantum dot devices with a top gate electrode positioned very close to the nanostructure.
Measurements of both the perpendicular as well as the parallel g-factor reveal
significant changes for a small modulation of the top gate voltage. From the observed
modulations, we estimate that, for realistic experimental conditions, hole spins
can be electrically manipulated with Rabi frequencies in the order of 100 MHz.
This work emphasises the potential of hole-based nano-devices for efficient spin
manipulation by means of the g-tensor modulation technique.
acknowledgement: We acknowledge the financial support from the Nanosciences Foundation
(Grenoble, France), the Commission for a Marie Curie Carrer Integration Grant, the
Austrian Science Fund (FWF) for a Lise-Meitner Fellowship (M1435-N30), the DOE under
Contract No. DE-FG02-08ER46482 (Yale), the European Starting Grant program, and
the Agence Nationale de la Recherche
author:
- first_name: Natalia
full_name: Ares, Natalia
last_name: Ares
- first_name: Georgios
full_name: Georgios Katsaros
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
- first_name: Vitaly
full_name: Golovach, Vitaly N
last_name: Golovach
- first_name: Jianjun
full_name: Zhang, Jianjun
last_name: Zhang
- first_name: Aaron
full_name: Prager, Aaron A
last_name: Prager
- first_name: Leonid
full_name: Glazman, Leonid I
last_name: Glazman
- first_name: Oliver
full_name: Schmidt, Oliver G
last_name: Schmidt
- first_name: Silvano
full_name: De Franceschi, Silvano
last_name: De Franceschi
citation:
ama: Ares N, Katsaros G, Golovach V, et al. SiGe quantum dots for fast hole spin
Rabi oscillations. Applied Physics Letters. 2013;103(26). doi:10.1063/1.4858959
apa: Ares, N., Katsaros, G., Golovach, V., Zhang, J., Prager, A., Glazman, L., …
De Franceschi, S. (2013). SiGe quantum dots for fast hole spin Rabi oscillations.
Applied Physics Letters. American Institute of Physics. https://doi.org/10.1063/1.4858959
chicago: Ares, Natalia, Georgios Katsaros, Vitaly Golovach, Jianjun Zhang, Aaron
Prager, Leonid Glazman, Oliver Schmidt, and Silvano De Franceschi. “SiGe Quantum
Dots for Fast Hole Spin Rabi Oscillations.” Applied Physics Letters. American
Institute of Physics, 2013. https://doi.org/10.1063/1.4858959.
ieee: N. Ares et al., “SiGe quantum dots for fast hole spin Rabi oscillations,”
Applied Physics Letters, vol. 103, no. 26. American Institute of Physics,
2013.
ista: Ares N, Katsaros G, Golovach V, Zhang J, Prager A, Glazman L, Schmidt O, De
Franceschi S. 2013. SiGe quantum dots for fast hole spin Rabi oscillations. Applied
Physics Letters. 103(26).
mla: Ares, Natalia, et al. “SiGe Quantum Dots for Fast Hole Spin Rabi Oscillations.”
Applied Physics Letters, vol. 103, no. 26, American Institute of Physics,
2013, doi:10.1063/1.4858959.
short: N. Ares, G. Katsaros, V. Golovach, J. Zhang, A. Prager, L. Glazman, O. Schmidt,
S. De Franceschi, Applied Physics Letters 103 (2013).
date_created: 2018-12-11T11:53:52Z
date_published: 2013-01-23T00:00:00Z
date_updated: 2021-01-12T06:53:02Z
day: '23'
doi: 10.1063/1.4858959
extern: 1
intvolume: ' 103'
issue: '26'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1307.7196
month: '01'
oa: 1
publication: Applied Physics Letters
publication_status: published
publisher: American Institute of Physics
publist_id: '5364'
quality_controlled: 0
status: public
title: SiGe quantum dots for fast hole spin Rabi oscillations
type: journal_article
volume: 103
year: '2013'
...
---
_id: '1786'
abstract:
- lang: eng
text: We report the experimental observation and a theoretical explanation of collective
suppression of linewidths for multiple superconducting qubits coupled to a good
cavity. This demonstrates how strong qubit-cavity coupling can significantly modify
the dephasing and dissipation processes that might be expected for individual
qubits, and can potentially improve coherence times in many-body circuit QED.
acknowledgement: J. K. acknowledges financial support from EPSRC program “TOPNES”
(EP/I031014/1) and EPSRC (EP/G004714/2)
author:
- first_name: Felix
full_name: Nissen, Felix
last_name: Nissen
- first_name: Johannes M
full_name: Johannes Fink
id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
last_name: Fink
orcid: 0000-0001-8112-028X
- first_name: Jonas
full_name: Mlynek, Jonas A
last_name: Mlynek
- first_name: Andreas
full_name: Wallraff, Andreas
last_name: Wallraff
- first_name: Jonathan
full_name: Keeling, Jonathan M
last_name: Keeling
citation:
ama: Nissen F, Fink JM, Mlynek J, Wallraff A, Keeling J. Collective suppression
of linewidths in circuit QED. Physical Review Letters. 2013;110(20). doi:10.1103/PhysRevLett.110.203602
apa: Nissen, F., Fink, J. M., Mlynek, J., Wallraff, A., & Keeling, J. (2013).
Collective suppression of linewidths in circuit QED. Physical Review Letters.
American Physical Society. https://doi.org/10.1103/PhysRevLett.110.203602
chicago: Nissen, Felix, Johannes M Fink, Jonas Mlynek, Andreas Wallraff, and Jonathan
Keeling. “Collective Suppression of Linewidths in Circuit QED.” Physical Review
Letters. American Physical Society, 2013. https://doi.org/10.1103/PhysRevLett.110.203602.
ieee: F. Nissen, J. M. Fink, J. Mlynek, A. Wallraff, and J. Keeling, “Collective
suppression of linewidths in circuit QED,” Physical Review Letters, vol.
110, no. 20. American Physical Society, 2013.
ista: Nissen F, Fink JM, Mlynek J, Wallraff A, Keeling J. 2013. Collective suppression
of linewidths in circuit QED. Physical Review Letters. 110(20).
mla: Nissen, Felix, et al. “Collective Suppression of Linewidths in Circuit QED.”
Physical Review Letters, vol. 110, no. 20, American Physical Society, 2013,
doi:10.1103/PhysRevLett.110.203602.
short: F. Nissen, J.M. Fink, J. Mlynek, A. Wallraff, J. Keeling, Physical Review
Letters 110 (2013).
date_created: 2018-12-11T11:54:00Z
date_published: 2013-05-15T00:00:00Z
date_updated: 2021-01-12T06:53:11Z
day: '15'
doi: 10.1103/PhysRevLett.110.203602
extern: 1
intvolume: ' 110'
issue: '20'
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1302.0665
month: '05'
oa: 1
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '5328'
quality_controlled: 0
status: public
title: Collective suppression of linewidths in circuit QED
type: journal_article
volume: 110
year: '2013'
...