---
_id: '2157'
abstract:
- lang: eng
  text: 'We show that the following algorithmic problem is decidable: given a 2-dimensional
    simplicial complex, can it be embedded (topologically, or equivalently, piecewise
    linearly) in ℝ3? By a known reduction, it suffices to decide the embeddability
    of a given triangulated 3-manifold X into the 3-sphere S3. The main step, which
    allows us to simplify X and recurse, is in proving that if X can be embedded in
    S3, then there is also an embedding in which X has a short meridian, i.e., an
    essential curve in the boundary of X bounding a disk in S3 nX with length bounded
    by a computable function of the number of tetrahedra of X.'
acknowledgement: ERC Advanced Grant No. 267165; Grant GRADR Eurogiga GIG/11/E023  (SNSF-PP00P2-138948);
  Swiss National Science Foundation  (SNSF-200020-138230).
author:
- first_name: Jiří
  full_name: Matoušek, Jiří
  last_name: Matoušek
- first_name: Eric
  full_name: Sedgwick, Eric
  last_name: Sedgwick
- first_name: Martin
  full_name: Tancer, Martin
  id: 38AC689C-F248-11E8-B48F-1D18A9856A87
  last_name: Tancer
  orcid: 0000-0002-1191-6714
- first_name: Uli
  full_name: Wagner, Uli
  id: 36690CA2-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
  orcid: 0000-0002-1494-0568
citation:
  ama: 'Matoušek J, Sedgwick E, Tancer M, Wagner U. Embeddability in the 3 sphere
    is decidable. In: <i>Proceedings of the Annual Symposium on Computational Geometry</i>.
    ACM; 2014:78-84. doi:<a href="https://doi.org/10.1145/2582112.2582137">10.1145/2582112.2582137</a>'
  apa: 'Matoušek, J., Sedgwick, E., Tancer, M., &#38; Wagner, U. (2014). Embeddability
    in the 3 sphere is decidable. In <i>Proceedings of the Annual Symposium on Computational
    Geometry</i> (pp. 78–84). Kyoto, Japan: ACM. <a href="https://doi.org/10.1145/2582112.2582137">https://doi.org/10.1145/2582112.2582137</a>'
  chicago: Matoušek, Jiří, Eric Sedgwick, Martin Tancer, and Uli Wagner. “Embeddability
    in the 3 Sphere Is Decidable.” In <i>Proceedings of the Annual Symposium on Computational
    Geometry</i>, 78–84. ACM, 2014. <a href="https://doi.org/10.1145/2582112.2582137">https://doi.org/10.1145/2582112.2582137</a>.
  ieee: J. Matoušek, E. Sedgwick, M. Tancer, and U. Wagner, “Embeddability in the
    3 sphere is decidable,” in <i>Proceedings of the Annual Symposium on Computational
    Geometry</i>, Kyoto, Japan, 2014, pp. 78–84.
  ista: 'Matoušek J, Sedgwick E, Tancer M, Wagner U. 2014. Embeddability in the 3
    sphere is decidable. Proceedings of the Annual Symposium on Computational Geometry.
    SoCG: Symposium on Computational Geometry, 78–84.'
  mla: Matoušek, Jiří, et al. “Embeddability in the 3 Sphere Is Decidable.” <i>Proceedings
    of the Annual Symposium on Computational Geometry</i>, ACM, 2014, pp. 78–84, doi:<a
    href="https://doi.org/10.1145/2582112.2582137">10.1145/2582112.2582137</a>.
  short: J. Matoušek, E. Sedgwick, M. Tancer, U. Wagner, in:, Proceedings of the Annual
    Symposium on Computational Geometry, ACM, 2014, pp. 78–84.
conference:
  end_date: 2014-06-11
  location: Kyoto, Japan
  name: 'SoCG: Symposium on Computational Geometry'
  start_date: 2014-06-08
date_created: 2018-12-11T11:56:02Z
date_published: 2014-06-01T00:00:00Z
date_updated: 2023-09-11T13:38:49Z
day: '01'
department:
- _id: UlWa
doi: 10.1145/2582112.2582137
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1402.0815
month: '06'
oa: 1
oa_version: Submitted Version
page: 78 - 84
publication: Proceedings of the Annual Symposium on Computational Geometry
publication_status: published
publisher: ACM
publist_id: '4849'
quality_controlled: '1'
related_material:
  record:
  - id: '425'
    relation: later_version
    status: public
scopus_import: 1
status: public
title: Embeddability in the 3 sphere is decidable
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '2158'
abstract:
- lang: eng
  text: Directional guidance of migrating cells is relatively well explored in the
    reductionist setting of cell culture experiments. Here spatial gradients of chemical
    cues as well as gradients of mechanical substrate characteristics prove sufficient
    to attract single cells as well as their collectives. How such gradients present
    and act in the context of an organism is far less clear. Here we review recent
    advances in understanding how guidance cues emerge and operate in the physiological
    context.
acknowledgement: This effort was supported by the Intramural Research Program of the
  Center for Cancer Research, NCI, National Institutes of Health and the European
  Research Council (ERC).
author:
- first_name: Ritankar
  full_name: Majumdar, Ritankar
  last_name: Majumdar
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
- first_name: Carole
  full_name: Parent, Carole
  last_name: Parent
citation:
  ama: Majumdar R, Sixt MK, Parent C. New paradigms in the establishment and maintenance
    of gradients during directed cell migration. <i>Current Opinion in Cell Biology</i>.
    2014;30(1):33-40. doi:<a href="https://doi.org/10.1016/j.ceb.2014.05.010">10.1016/j.ceb.2014.05.010</a>
  apa: Majumdar, R., Sixt, M. K., &#38; Parent, C. (2014). New paradigms in the establishment
    and maintenance of gradients during directed cell migration. <i>Current Opinion
    in Cell Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.ceb.2014.05.010">https://doi.org/10.1016/j.ceb.2014.05.010</a>
  chicago: Majumdar, Ritankar, Michael K Sixt, and Carole Parent. “New Paradigms in
    the Establishment and Maintenance of Gradients during Directed Cell Migration.”
    <i>Current Opinion in Cell Biology</i>. Elsevier, 2014. <a href="https://doi.org/10.1016/j.ceb.2014.05.010">https://doi.org/10.1016/j.ceb.2014.05.010</a>.
  ieee: R. Majumdar, M. K. Sixt, and C. Parent, “New paradigms in the establishment
    and maintenance of gradients during directed cell migration,” <i>Current Opinion
    in Cell Biology</i>, vol. 30, no. 1. Elsevier, pp. 33–40, 2014.
  ista: Majumdar R, Sixt MK, Parent C. 2014. New paradigms in the establishment and
    maintenance of gradients during directed cell migration. Current Opinion in Cell
    Biology. 30(1), 33–40.
  mla: Majumdar, Ritankar, et al. “New Paradigms in the Establishment and Maintenance
    of Gradients during Directed Cell Migration.” <i>Current Opinion in Cell Biology</i>,
    vol. 30, no. 1, Elsevier, 2014, pp. 33–40, doi:<a href="https://doi.org/10.1016/j.ceb.2014.05.010">10.1016/j.ceb.2014.05.010</a>.
  short: R. Majumdar, M.K. Sixt, C. Parent, Current Opinion in Cell Biology 30 (2014)
    33–40.
date_created: 2018-12-11T11:56:03Z
date_published: 2014-10-01T00:00:00Z
date_updated: 2021-01-12T06:55:40Z
day: '01'
department:
- _id: MiSi
doi: 10.1016/j.ceb.2014.05.010
external_id:
  pmid:
  - '24959970'
intvolume: '        30'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4177954/
month: '10'
oa: 1
oa_version: Submitted Version
page: 33 - 40
pmid: 1
publication: Current Opinion in Cell Biology
publication_status: published
publisher: Elsevier
publist_id: '4848'
quality_controlled: '1'
scopus_import: 1
status: public
title: New paradigms in the establishment and maintenance of gradients during directed
  cell migration
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 30
year: '2014'
...
---
_id: '2159'
abstract:
- lang: eng
  text: 'Motivated by topological Tverberg-type problems, we consider multiple (double,
    triple, and higher multiplicity) selfintersection points of maps from finite simplicial
    complexes (compact polyhedra) into ℝd and study conditions under which such multiple
    points can be eliminated. The most classical case is that of embeddings (i.e.,
    maps without double points) of a κ-dimensional complex K into ℝ2κ. For this problem,
    the work of van Kampen, Shapiro, and Wu provides an efficiently testable necessary
    condition for embeddability (namely, vanishing of the van Kampen ob-struction).
    For κ ≥ 3, the condition is also sufficient, and yields a polynomial-time algorithm
    for deciding embeddability: One starts with an arbitrary map f : K→ℝ2κ, which
    generically has finitely many double points; if k ≥ 3 and if the obstruction vanishes
    then one can successively remove these double points by local modifications of
    the map f. One of the main tools is the famous Whitney trick that permits eliminating
    pairs of double points of opposite intersection sign. We are interested in generalizing
    this approach to intersection points of higher multiplicity. We call a point y
    2 ℝd an r-fold Tverberg point of a map f : Kκ →ℝd if y lies in the intersection
    f(σ1)∩. ∩f(σr) of the images of r pairwise disjoint simplices of K. The analogue
    of (non-)embeddability that we study is the problem Tverbergκ r→d: Given a κ-dimensional
    complex K, does it satisfy a Tverberg-type theorem with parameters r and d, i.e.,
    does every map f : K κ → ℝd have an r-fold Tverberg point? Here, we show that
    for fixed r, κ and d of the form d = rm and k = (r-1)m, m ≥ 3, there is a polynomial-time
    algorithm for deciding this (based on the vanishing of a cohomological obstruction,
    as in the case of embeddings). Our main tool is an r-fold analogue of the Whitney
    trick: Given r pairwise disjoint simplices of K such that the intersection of
    their images contains two r-fold Tverberg points y+ and y- of opposite intersection
    sign, we can eliminate y+ and y- by a local isotopy of f. In a subsequent paper,
    we plan to develop this further and present a generalization of the classical
    Haeiger-Weber Theorem (which yields a necessary and sufficient condition for embeddability
    of κ-complexes into ℝd for a wider range of dimensions) to intersection points
    of higher multiplicity.'
acknowledgement: Swiss National Science Foundation (Project SNSF-PP00P2-138948)
author:
- first_name: Isaac
  full_name: Mabillard, Isaac
  id: 32BF9DAA-F248-11E8-B48F-1D18A9856A87
  last_name: Mabillard
- first_name: Uli
  full_name: Wagner, Uli
  id: 36690CA2-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
  orcid: 0000-0002-1494-0568
citation:
  ama: 'Mabillard I, Wagner U. Eliminating Tverberg points, I. An analogue of the
    Whitney trick. In: <i>Proceedings of the Annual Symposium on Computational Geometry</i>.
    ACM; 2014:171-180. doi:<a href="https://doi.org/10.1145/2582112.2582134">10.1145/2582112.2582134</a>'
  apa: 'Mabillard, I., &#38; Wagner, U. (2014). Eliminating Tverberg points, I. An
    analogue of the Whitney trick. In <i>Proceedings of the Annual Symposium on Computational
    Geometry</i> (pp. 171–180). Kyoto, Japan: ACM. <a href="https://doi.org/10.1145/2582112.2582134">https://doi.org/10.1145/2582112.2582134</a>'
  chicago: Mabillard, Isaac, and Uli Wagner. “Eliminating Tverberg Points, I. An Analogue
    of the Whitney Trick.” In <i>Proceedings of the Annual Symposium on Computational
    Geometry</i>, 171–80. ACM, 2014. <a href="https://doi.org/10.1145/2582112.2582134">https://doi.org/10.1145/2582112.2582134</a>.
  ieee: I. Mabillard and U. Wagner, “Eliminating Tverberg points, I. An analogue of
    the Whitney trick,” in <i>Proceedings of the Annual Symposium on Computational
    Geometry</i>, Kyoto, Japan, 2014, pp. 171–180.
  ista: 'Mabillard I, Wagner U. 2014. Eliminating Tverberg points, I. An analogue
    of the Whitney trick. Proceedings of the Annual Symposium on Computational Geometry.
    SoCG: Symposium on Computational Geometry, 171–180.'
  mla: Mabillard, Isaac, and Uli Wagner. “Eliminating Tverberg Points, I. An Analogue
    of the Whitney Trick.” <i>Proceedings of the Annual Symposium on Computational
    Geometry</i>, ACM, 2014, pp. 171–80, doi:<a href="https://doi.org/10.1145/2582112.2582134">10.1145/2582112.2582134</a>.
  short: I. Mabillard, U. Wagner, in:, Proceedings of the Annual Symposium on Computational
    Geometry, ACM, 2014, pp. 171–180.
conference:
  end_date: 2014-06-11
  location: Kyoto, Japan
  name: 'SoCG: Symposium on Computational Geometry'
  start_date: 2014-06-08
date_created: 2018-12-11T11:56:03Z
date_published: 2014-06-08T00:00:00Z
date_updated: 2023-09-07T11:56:27Z
day: '08'
ddc:
- '510'
department:
- _id: UlWa
doi: 10.1145/2582112.2582134
file:
- access_level: open_access
  checksum: 2aae223fee8ffeaf57bbabd8d92b6a2c
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  creator: system
  date_created: 2018-12-12T10:09:12Z
  date_updated: 2020-07-14T12:45:30Z
  file_id: '4735'
  file_name: IST-2016-534-v1+1_Eliminating_Tverberg_points_I._An_analogue_of_the_Whitney_trick.pdf
  file_size: 914396
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file_date_updated: 2020-07-14T12:45:30Z
has_accepted_license: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Submitted Version
page: 171 - 180
publication: Proceedings of the Annual Symposium on Computational Geometry
publication_status: published
publisher: ACM
publist_id: '4847'
pubrep_id: '534'
quality_controlled: '1'
related_material:
  record:
  - id: '1123'
    relation: dissertation_contains
    status: public
scopus_import: 1
status: public
title: Eliminating Tverberg points, I. An analogue of the Whitney trick
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '2160'
abstract:
- lang: eng
  text: Transfer learning has received a lot of attention in the machine learning
    community over the last years, and several effective algorithms have been developed.
    However, relatively little is known about their theoretical properties, especially
    in the setting of lifelong learning, where the goal is to transfer information
    to tasks for which no data have been observed so far. In this work we study lifelong
    learning from a theoretical perspective. Our main result is a PAC-Bayesian generalization
    bound that offers a unified view on existing paradigms for transfer learning,
    such as the transfer of parameters or the transfer of low-dimensional representations.
    We also use the bound to derive two principled lifelong learning algorithms, and
    we show that these yield results comparable with existing methods.
article_processing_charge: No
author:
- first_name: Anastasia
  full_name: Pentina, Anastasia
  id: 42E87FC6-F248-11E8-B48F-1D18A9856A87
  last_name: Pentina
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Pentina A, Lampert C. A PAC-Bayesian bound for Lifelong Learning. In: Vol
    32. ML Research Press; 2014:991-999.'
  apa: 'Pentina, A., &#38; Lampert, C. (2014). A PAC-Bayesian bound for Lifelong Learning
    (Vol. 32, pp. 991–999). Presented at the ICML: International Conference on Machine
    Learning, Beijing, China: ML Research Press.'
  chicago: Pentina, Anastasia, and Christoph Lampert. “A PAC-Bayesian Bound for Lifelong
    Learning,” 32:991–99. ML Research Press, 2014.
  ieee: 'A. Pentina and C. Lampert, “A PAC-Bayesian bound for Lifelong Learning,”
    presented at the ICML: International Conference on Machine Learning, Beijing,
    China, 2014, vol. 32, pp. 991–999.'
  ista: 'Pentina A, Lampert C. 2014. A PAC-Bayesian bound for Lifelong Learning. ICML:
    International Conference on Machine Learning vol. 32, 991–999.'
  mla: Pentina, Anastasia, and Christoph Lampert. <i>A PAC-Bayesian Bound for Lifelong
    Learning</i>. Vol. 32, ML Research Press, 2014, pp. 991–99.
  short: A. Pentina, C. Lampert, in:, ML Research Press, 2014, pp. 991–999.
conference:
  end_date: 2014-06-26
  location: Beijing, China
  name: 'ICML: International Conference on Machine Learning'
  start_date: 2014-06-21
date_created: 2018-12-11T11:56:03Z
date_published: 2014-05-10T00:00:00Z
date_updated: 2023-10-17T11:54:24Z
day: '10'
department:
- _id: ChLa
intvolume: '        32'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://dl.acm.org/citation.cfm?id=3045003
month: '05'
oa: 1
oa_version: Submitted Version
page: 991 - 999
publication_status: published
publisher: ML Research Press
publist_id: '4844'
quality_controlled: '1'
scopus_import: '1'
status: public
title: A PAC-Bayesian bound for Lifelong Learning
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2014'
...
---
_id: '2162'
abstract:
- lang: eng
  text: 'We study two-player (zero-sum) concurrent mean-payoff games played on a finite-state
    graph. We focus on the important sub-class of ergodic games where all states are
    visited infinitely often with probability 1. The algorithmic study of ergodic
    games was initiated in a seminal work of Hoffman and Karp in 1966, but all basic
    complexity questions have remained unresolved. Our main results for ergodic games
    are as follows: We establish (1) an optimal exponential bound on the patience
    of stationary strategies (where patience of a distribution is the inverse of the
    smallest positive probability and represents a complexity measure of a stationary
    strategy); (2) the approximation problem lies in FNP; (3) the approximation problem
    is at least as hard as the decision problem for simple stochastic games (for which
    NP ∩ coNP is the long-standing best known bound). We present a variant of the
    strategy-iteration algorithm by Hoffman and Karp; show that both our algorithm
    and the classical value-iteration algorithm can approximate the value in exponential
    time; and identify a subclass where the value-iteration algorithm is a FPTAS.
    We also show that the exact value can be expressed in the existential theory of
    the reals, and establish square-root sum hardness for a related class of games.'
alternative_title:
- LNCS
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Rasmus
  full_name: Ibsen-Jensen, Rasmus
  id: 3B699956-F248-11E8-B48F-1D18A9856A87
  last_name: Ibsen-Jensen
  orcid: 0000-0003-4783-0389
citation:
  ama: 'Chatterjee K, Ibsen-Jensen R. The complexity of ergodic mean payoff games.
    In: Vol 8573. Springer; 2014:122-133. doi:<a href="https://doi.org/10.1007/978-3-662-43951-7_11">10.1007/978-3-662-43951-7_11</a>'
  apa: 'Chatterjee, K., &#38; Ibsen-Jensen, R. (2014). The complexity of ergodic mean
    payoff games (Vol. 8573, pp. 122–133). Presented at the ICST: International Conference
    on Software Testing, Verification and Validation, Copenhagen, Denmark: Springer.
    <a href="https://doi.org/10.1007/978-3-662-43951-7_11">https://doi.org/10.1007/978-3-662-43951-7_11</a>'
  chicago: Chatterjee, Krishnendu, and Rasmus Ibsen-Jensen. “The Complexity of Ergodic
    Mean Payoff Games,” 8573:122–33. Springer, 2014. <a href="https://doi.org/10.1007/978-3-662-43951-7_11">https://doi.org/10.1007/978-3-662-43951-7_11</a>.
  ieee: 'K. Chatterjee and R. Ibsen-Jensen, “The complexity of ergodic mean payoff
    games,” presented at the ICST: International Conference on Software Testing, Verification
    and Validation, Copenhagen, Denmark, 2014, vol. 8573, no. Part 2, pp. 122–133.'
  ista: 'Chatterjee K, Ibsen-Jensen R. 2014. The complexity of ergodic mean payoff
    games. ICST: International Conference on Software Testing, Verification and Validation,
    LNCS, vol. 8573, 122–133.'
  mla: Chatterjee, Krishnendu, and Rasmus Ibsen-Jensen. <i>The Complexity of Ergodic
    Mean Payoff Games</i>. Vol. 8573, no. Part 2, Springer, 2014, pp. 122–33, doi:<a
    href="https://doi.org/10.1007/978-3-662-43951-7_11">10.1007/978-3-662-43951-7_11</a>.
  short: K. Chatterjee, R. Ibsen-Jensen, in:, Springer, 2014, pp. 122–133.
conference:
  end_date: 2014-07-11
  location: Copenhagen, Denmark
  name: 'ICST: International Conference on Software Testing, Verification and Validation'
  start_date: 2014-07-08
date_created: 2018-12-11T11:56:04Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2023-02-23T12:24:48Z
day: '01'
department:
- _id: KrCh
doi: 10.1007/978-3-662-43951-7_11
ec_funded: 1
external_id:
  arxiv:
  - '1404.5734'
intvolume: '      8573'
issue: Part 2
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1404.5734
month: '01'
oa: 1
oa_version: Preprint
page: 122 - 133
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication_status: published
publisher: Springer
publist_id: '4822'
quality_controlled: '1'
related_material:
  record:
  - id: '5404'
    relation: earlier_version
    status: public
status: public
title: The complexity of ergodic mean payoff games
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8573
year: '2014'
...
---
_id: '2163'
abstract:
- lang: eng
  text: We consider multi-player graph games with partial-observation and parity objective.
    While the decision problem for three-player games with a coalition of the first
    and second players against the third player is undecidable in general, we present
    a decidability result for partial-observation games where the first and third
    player are in a coalition against the second player, thus where the second player
    is adversarial but weaker due to partial-observation. We establish tight complexity
    bounds in the case where player 1 is less informed than player 2, namely 2-EXPTIME-completeness
    for parity objectives. The symmetric case of player 1 more informed than player
    2 is much more complicated, and we show that already in the case where player
    1 has perfect observation, memory of size non-elementary is necessary in general
    for reachability objectives, and the problem is decidable for safety and reachability
    objectives. From our results we derive new complexity results for partial-observation
    stochastic games.
acknowledgement: "This research was partly supported by European project Cassting
  (FP7-601148).\r\nTechnical Report under https://research-explorer.app.ist.ac.at/record/5418\r\n"
alternative_title:
- LNCS
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Laurent
  full_name: Doyen, Laurent
  last_name: Doyen
citation:
  ama: 'Chatterjee K, Doyen L. Games with a weak adversary. In: <i>Lecture Notes in
    Computer Science</i>. Vol 8573. Springer; 2014:110-121. doi:<a href="https://doi.org/10.1007/978-3-662-43951-7_10">10.1007/978-3-662-43951-7_10</a>'
  apa: 'Chatterjee, K., &#38; Doyen, L. (2014). Games with a weak adversary. In <i>Lecture
    Notes in Computer Science</i> (Vol. 8573, pp. 110–121). Copenhagen, Denmark: Springer.
    <a href="https://doi.org/10.1007/978-3-662-43951-7_10">https://doi.org/10.1007/978-3-662-43951-7_10</a>'
  chicago: Chatterjee, Krishnendu, and Laurent Doyen. “Games with a Weak Adversary.”
    In <i>Lecture Notes in Computer Science</i>, 8573:110–21. Springer, 2014. <a href="https://doi.org/10.1007/978-3-662-43951-7_10">https://doi.org/10.1007/978-3-662-43951-7_10</a>.
  ieee: K. Chatterjee and L. Doyen, “Games with a weak adversary,” in <i>Lecture Notes
    in Computer Science</i>, Copenhagen, Denmark, 2014, vol. 8573, no. Part 2, pp.
    110–121.
  ista: 'Chatterjee K, Doyen L. 2014. Games with a weak adversary. Lecture Notes in
    Computer Science. ICALP: Automata, Languages and Programming, LNCS, vol. 8573,
    110–121.'
  mla: Chatterjee, Krishnendu, and Laurent Doyen. “Games with a Weak Adversary.” <i>Lecture
    Notes in Computer Science</i>, vol. 8573, no. Part 2, Springer, 2014, pp. 110–21,
    doi:<a href="https://doi.org/10.1007/978-3-662-43951-7_10">10.1007/978-3-662-43951-7_10</a>.
  short: K. Chatterjee, L. Doyen, in:, Lecture Notes in Computer Science, Springer,
    2014, pp. 110–121.
conference:
  end_date: 2014-07-11
  location: Copenhagen, Denmark
  name: 'ICALP: Automata, Languages and Programming'
  start_date: 2014-07-08
date_created: 2018-12-11T11:56:04Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2023-02-23T12:25:29Z
day: '01'
department:
- _id: KrCh
doi: 10.1007/978-3-662-43951-7_10
ec_funded: 1
external_id:
  arxiv:
  - '1404.5453'
intvolume: '      8573'
issue: Part 2
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1404.5453
month: '01'
oa: 1
oa_version: Preprint
page: 110 - 121
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication: Lecture Notes in Computer Science
publication_status: published
publisher: Springer
publist_id: '4821'
quality_controlled: '1'
related_material:
  record:
  - id: '5418'
    relation: earlier_version
    status: public
status: public
title: Games with a weak adversary
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8573
year: '2014'
...
---
_id: '2165'
abstract:
- lang: eng
  text: 'In machine learning, the domain adaptation problem arrives when the test
    (tar-get) and the train (source) data are generated from different distributions.  A
    key applied issue is thus the design of algorithms able to generalize on a new
    distribution,  for which we have no label information.  We focus on learning classification
    models defined as a weighted majority vote over a set of real-valued functions.
    In this context, Germain et al. (2013) have shown that a measure of disagreement
    between these functions is crucial to control. The core of this measure is a theoretical
    bound—the C-bound (Lacasse et al., 2007)—which involves the disagreement and leads
    to a well performing majority vote learn-ing algorithm in usual non-adaptative
    supervised setting: MinCq. In this work,we propose a framework to extend MinCq
    to a domain adaptation scenario.This procedure takes advantage of the recent perturbed
    variation divergence between distributions proposed by Harel and Mannor (2012).  Justified
    by a theoretical bound on the target risk of the vote,  we provide to MinCq a
    tar-get sample labeled thanks to a perturbed variation-based self-labeling focused
    on the regions where the source and target marginals appear similar.  We also
    study the influence of our self-labeling, from which we deduce an original process
    for tuning the hyperparameters. Finally, our framework called PV-MinCq shows very
    promising results on a rotation and translation synthetic problem.'
author:
- first_name: Emilie
  full_name: Morvant, Emilie
  id: 4BAC2A72-F248-11E8-B48F-1D18A9856A87
  last_name: Morvant
  orcid: 0000-0002-8301-7240
citation:
  ama: Morvant E. Domain Adaptation of Weighted Majority Votes via Perturbed Variation-Based
    Self-Labeling. <i>Pattern Recognition Letters</i>. 2014;51:37-43. doi:<a href="https://doi.org/10.1016/j.patrec.2014.08.013">10.1016/j.patrec.2014.08.013</a>
  apa: Morvant, E. (2014). Domain Adaptation of Weighted Majority Votes via Perturbed
    Variation-Based Self-Labeling. <i>Pattern Recognition Letters</i>. Elsevier. <a
    href="https://doi.org/10.1016/j.patrec.2014.08.013">https://doi.org/10.1016/j.patrec.2014.08.013</a>
  chicago: Morvant, Emilie. “Domain Adaptation of Weighted Majority Votes via Perturbed
    Variation-Based Self-Labeling.” <i>Pattern Recognition Letters</i>. Elsevier,
    2014. <a href="https://doi.org/10.1016/j.patrec.2014.08.013">https://doi.org/10.1016/j.patrec.2014.08.013</a>.
  ieee: E. Morvant, “Domain Adaptation of Weighted Majority Votes via Perturbed Variation-Based
    Self-Labeling,” <i>Pattern Recognition Letters</i>, vol. 51. Elsevier, pp. 37–43,
    2014.
  ista: Morvant E. 2014. Domain Adaptation of Weighted Majority Votes via Perturbed
    Variation-Based Self-Labeling. Pattern Recognition Letters. 51, 37–43.
  mla: Morvant, Emilie. “Domain Adaptation of Weighted Majority Votes via Perturbed
    Variation-Based Self-Labeling.” <i>Pattern Recognition Letters</i>, vol. 51, Elsevier,
    2014, pp. 37–43, doi:<a href="https://doi.org/10.1016/j.patrec.2014.08.013">10.1016/j.patrec.2014.08.013</a>.
  short: E. Morvant, Pattern Recognition Letters 51 (2014) 37–43.
date_created: 2018-12-11T11:56:05Z
date_published: 2014-10-01T00:00:00Z
date_updated: 2021-01-12T06:55:43Z
day: '01'
doi: 10.1016/j.patrec.2014.08.013
ec_funded: 1
extern: '1'
intvolume: '        51'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1410.0334
month: '10'
oa: 1
oa_version: Submitted Version
page: 37-43
project:
- _id: 2532554C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '308036'
  name: Lifelong Learning of Visual Scene Understanding
publication: Pattern Recognition Letters
publication_status: published
publisher: Elsevier
publist_id: '4819'
quality_controlled: '1'
status: public
title: Domain Adaptation of Weighted Majority Votes via Perturbed Variation-Based
  Self-Labeling
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 51
year: '2014'
...
---
_id: '2167'
abstract:
- lang: eng
  text: Model-based testing is a promising technology for black-box software and hardware
    testing, in which test cases are generated automatically from high-level specifications.
    Nowadays, systems typically consist of multiple interacting components and, due
    to their complexity, testing presents a considerable portion of the effort and
    cost in the design process. Exploiting the compositional structure of system specifications
    can considerably reduce the effort in model-based testing. Moreover, inferring
    properties about the system from testing its individual components allows the
    designer to reduce the amount of integration testing. In this paper, we study
    compositional properties of the ioco-testing theory. We propose a new approach
    to composition and hiding operations, inspired by contract-based design and interface
    theories. These operations preserve behaviors that are compatible under composition
    and hiding, and prune away incompatible ones. The resulting specification characterizes
    the input sequences for which the unit testing of components is sufficient to
    infer the correctness of component integration without the need for further tests.
    We provide a methodology that uses these results to minimize integration testing
    effort, but also to detect potential weaknesses in specifications. While we focus
    on asynchronous models and the ioco conformance relation, the resulting methodology
    can be applied to a broader class of systems.
article_number: '6823899'
article_processing_charge: No
arxiv: 1
author:
- first_name: Przemyslaw
  full_name: Daca, Przemyslaw
  id: 49351290-F248-11E8-B48F-1D18A9856A87
  last_name: Daca
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Willibald
  full_name: Krenn, Willibald
  last_name: Krenn
- first_name: Dejan
  full_name: Nickovic, Dejan
  last_name: Nickovic
citation:
  ama: 'Daca P, Henzinger TA, Krenn W, Nickovic D. Compositional specifications for
    IOCO testing. In: <i>IEEE 7th International Conference on Software Testing, Verification
    and Validation</i>. IEEE; 2014. doi:<a href="https://doi.org/10.1109/ICST.2014.50">10.1109/ICST.2014.50</a>'
  apa: 'Daca, P., Henzinger, T. A., Krenn, W., &#38; Nickovic, D. (2014). Compositional
    specifications for IOCO testing. In <i>IEEE 7th International Conference on Software
    Testing, Verification and Validation</i>. Cleveland, USA: IEEE. <a href="https://doi.org/10.1109/ICST.2014.50">https://doi.org/10.1109/ICST.2014.50</a>'
  chicago: Daca, Przemyslaw, Thomas A Henzinger, Willibald Krenn, and Dejan Nickovic.
    “Compositional Specifications for IOCO Testing.” In <i>IEEE 7th International
    Conference on Software Testing, Verification and Validation</i>. IEEE, 2014. <a
    href="https://doi.org/10.1109/ICST.2014.50">https://doi.org/10.1109/ICST.2014.50</a>.
  ieee: P. Daca, T. A. Henzinger, W. Krenn, and D. Nickovic, “Compositional specifications
    for IOCO testing,” in <i>IEEE 7th International Conference on Software Testing,
    Verification and Validation</i>, Cleveland, USA, 2014.
  ista: 'Daca P, Henzinger TA, Krenn W, Nickovic D. 2014. Compositional specifications
    for IOCO testing. IEEE 7th International Conference on Software Testing, Verification
    and Validation. ICST: International Conference on Software Testing, Verification
    and Validation, 6823899.'
  mla: Daca, Przemyslaw, et al. “Compositional Specifications for IOCO Testing.” <i>IEEE
    7th International Conference on Software Testing, Verification and Validation</i>,
    6823899, IEEE, 2014, doi:<a href="https://doi.org/10.1109/ICST.2014.50">10.1109/ICST.2014.50</a>.
  short: P. Daca, T.A. Henzinger, W. Krenn, D. Nickovic, in:, IEEE 7th International
    Conference on Software Testing, Verification and Validation, IEEE, 2014.
conference:
  end_date: 2014-04-04
  location: Cleveland, USA
  name: 'ICST: International Conference on Software Testing, Verification and Validation'
  start_date: 2014-03-31
date_created: 2018-12-11T11:56:06Z
date_published: 2014-03-01T00:00:00Z
date_updated: 2023-09-07T11:58:33Z
day: '01'
department:
- _id: ToHe
doi: 10.1109/ICST.2014.50
ec_funded: 1
external_id:
  arxiv:
  - '1904.07083'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1904.07083
month: '03'
oa: 1
oa_version: Preprint
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 25F5A88A-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11402-N23
  name: Moderne Concurrency Paradigms
publication: IEEE 7th International Conference on Software Testing, Verification and
  Validation
publication_identifier:
  isbn:
  - 978-1-4799-2255-0
  issn:
  - 2159-4848
publication_status: published
publisher: IEEE
publist_id: '4817'
quality_controlled: '1'
related_material:
  record:
  - id: '5411'
    relation: earlier_version
    status: public
  - id: '1155'
    relation: dissertation_contains
    status: public
scopus_import: 1
status: public
title: Compositional specifications for IOCO testing
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '2168'
abstract:
- lang: eng
  text: Many species have an essentially continuous distribution in space, in which
    there are no natural divisions between randomly mating subpopulations. Yet, the
    standard approach to modelling these populations is to impose an arbitrary grid
    of demes, adjusting deme sizes and migration rates in an attempt to capture the
    important features of the population. Such indirect methods are required because
    of the failure of the classical models of isolation by distance, which have been
    shown to have major technical flaws. A recently introduced model of extinction
    and recolonisation in two dimensions solves these technical problems, and provides
    a rigorous technical foundation for the study of populations evolving in a spatial
    continuum. The coalescent process for this model is simply stated, but direct
    simulation is very inefficient for large neighbourhood sizes. We present efficient
    and exact algorithms to simulate this coalescent process for arbitrary sample
    sizes and numbers of loci, and analyse these algorithms in detail.
author:
- first_name: Jerome
  full_name: Kelleher, Jerome
  last_name: Kelleher
- first_name: Alison
  full_name: Etheridge, Alison
  last_name: Etheridge
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: 'Kelleher J, Etheridge A, Barton NH. Coalescent simulation in continuous space:
    Algorithms for large neighbourhood size. <i>Theoretical Population Biology</i>.
    2014;95:13-23. doi:<a href="https://doi.org/10.1016/j.tpb.2014.05.001">10.1016/j.tpb.2014.05.001</a>'
  apa: 'Kelleher, J., Etheridge, A., &#38; Barton, N. H. (2014). Coalescent simulation
    in continuous space: Algorithms for large neighbourhood size. <i>Theoretical Population
    Biology</i>. Academic Press. <a href="https://doi.org/10.1016/j.tpb.2014.05.001">https://doi.org/10.1016/j.tpb.2014.05.001</a>'
  chicago: 'Kelleher, Jerome, Alison Etheridge, and Nicholas H Barton. “Coalescent
    Simulation in Continuous Space: Algorithms for Large Neighbourhood Size.” <i>Theoretical
    Population Biology</i>. Academic Press, 2014. <a href="https://doi.org/10.1016/j.tpb.2014.05.001">https://doi.org/10.1016/j.tpb.2014.05.001</a>.'
  ieee: 'J. Kelleher, A. Etheridge, and N. H. Barton, “Coalescent simulation in continuous
    space: Algorithms for large neighbourhood size,” <i>Theoretical Population Biology</i>,
    vol. 95. Academic Press, pp. 13–23, 2014.'
  ista: 'Kelleher J, Etheridge A, Barton NH. 2014. Coalescent simulation in continuous
    space: Algorithms for large neighbourhood size. Theoretical Population Biology.
    95, 13–23.'
  mla: 'Kelleher, Jerome, et al. “Coalescent Simulation in Continuous Space: Algorithms
    for Large Neighbourhood Size.” <i>Theoretical Population Biology</i>, vol. 95,
    Academic Press, 2014, pp. 13–23, doi:<a href="https://doi.org/10.1016/j.tpb.2014.05.001">10.1016/j.tpb.2014.05.001</a>.'
  short: J. Kelleher, A. Etheridge, N.H. Barton, Theoretical Population Biology 95
    (2014) 13–23.
date_created: 2018-12-11T11:56:06Z
date_published: 2014-08-01T00:00:00Z
date_updated: 2021-01-12T06:55:44Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1016/j.tpb.2014.05.001
ec_funded: 1
file:
- access_level: open_access
  checksum: 979d7a8034e9df198f068f0d251f31bd
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:10:49Z
  date_updated: 2020-07-14T12:45:31Z
  file_id: '4839'
  file_name: IST-2015-391-v1+1_1-s2.0-S0040580914000355-main.pdf
  file_size: 569005
  relation: main_file
file_date_updated: 2020-07-14T12:45:31Z
has_accepted_license: '1'
intvolume: '        95'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 13 - 23
project:
- _id: 25B07788-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '250152'
  name: Limits to selection in biology and in evolutionary computation
publication: Theoretical Population Biology
publication_status: published
publisher: Academic Press
publist_id: '4816'
pubrep_id: '391'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Coalescent simulation in continuous space: Algorithms for large neighbourhood
  size'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 95
year: '2014'
...
---
_id: '2169'
author:
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
- first_name: Sebastian
  full_name: Novak, Sebastian
  id: 461468AE-F248-11E8-B48F-1D18A9856A87
  last_name: Novak
- first_name: Tiago
  full_name: Paixao, Tiago
  id: 2C5658E6-F248-11E8-B48F-1D18A9856A87
  last_name: Paixao
  orcid: 0000-0003-2361-3953
citation:
  ama: Barton NH, Novak S, Paixao T. Diverse forms of selection in evolution and computer
    science. <i>PNAS</i>. 2014;111(29):10398-10399. doi:<a href="https://doi.org/10.1073/pnas.1410107111">10.1073/pnas.1410107111</a>
  apa: Barton, N. H., Novak, S., &#38; Paixao, T. (2014). Diverse forms of selection
    in evolution and computer science. <i>PNAS</i>. National Academy of Sciences.
    <a href="https://doi.org/10.1073/pnas.1410107111">https://doi.org/10.1073/pnas.1410107111</a>
  chicago: Barton, Nicholas H, Sebastian Novak, and Tiago Paixao. “Diverse Forms of
    Selection in Evolution and Computer Science.” <i>PNAS</i>. National Academy of
    Sciences, 2014. <a href="https://doi.org/10.1073/pnas.1410107111">https://doi.org/10.1073/pnas.1410107111</a>.
  ieee: N. H. Barton, S. Novak, and T. Paixao, “Diverse forms of selection in evolution
    and computer science,” <i>PNAS</i>, vol. 111, no. 29. National Academy of Sciences,
    pp. 10398–10399, 2014.
  ista: Barton NH, Novak S, Paixao T. 2014. Diverse forms of selection in evolution
    and computer science. PNAS. 111(29), 10398–10399.
  mla: Barton, Nicholas H., et al. “Diverse Forms of Selection in Evolution and Computer
    Science.” <i>PNAS</i>, vol. 111, no. 29, National Academy of Sciences, 2014, pp.
    10398–99, doi:<a href="https://doi.org/10.1073/pnas.1410107111">10.1073/pnas.1410107111</a>.
  short: N.H. Barton, S. Novak, T. Paixao, PNAS 111 (2014) 10398–10399.
date_created: 2018-12-11T11:56:07Z
date_published: 2014-07-22T00:00:00Z
date_updated: 2021-01-12T06:55:45Z
day: '22'
department:
- _id: NiBa
doi: 10.1073/pnas.1410107111
intvolume: '       111'
issue: '29'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4115508/
month: '07'
oa: 1
oa_version: Submitted Version
page: 10398 - 10399
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '4815'
quality_controlled: '1'
scopus_import: 1
status: public
title: Diverse forms of selection in evolution and computer science
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 111
year: '2014'
...
---
_id: '2170'
abstract:
- lang: eng
  text: ' Short-read sequencing technologies have in principle made it feasible to
    draw detailed inferences about the recent history of any organism. In practice,
    however, this remains challenging due to the difficulty of genome assembly in
    most organisms and the lack of statistical methods powerful enough to discriminate
    between recent, nonequilibrium histories. We address both the assembly and inference
    challenges. We develop a bioinformatic pipeline for generating outgroup-rooted
    alignments of orthologous sequence blocks from de novo low-coverage short-read
    data for a small number of genomes, and show how such sequence blocks can be used
    to fit explicit models of population divergence and admixture in a likelihood
    framework. To illustrate our approach, we reconstruct the Pleistocene history
    of an oak-feeding insect (the oak gallwasp Biorhiza pallida), which, in common
    with many other taxa, was restricted during Pleistocene ice ages to a longitudinal
    series of southern refugia spanning the Western Palaearctic. Our analysis of sequence
    blocks sampled from a single genome from each of three major glacial refugia reveals
    support for an unexpected history dominated by recent admixture. Despite the fact
    that 80% of the genome is affected by admixture during the last glacial cycle,
    we are able to infer the deeper divergence history of these populations. These
    inferences are robust to variation in block length, mutation model and the sampling
    location of individual genomes within refugia. This combination of de novo assembly
    and numerical likelihood calculation provides a powerful framework for estimating
    recent population history that can be applied to any organism without the need
    for prior genetic resources.'
acknowledgement: This work was funded by NERC grants to G Stone, J Nicholls, K Lohse
  and N Barton (NE/J010499, NBAF375, NE/E014453/1 and NER/B/S2003/00856).
author:
- first_name: Jack
  full_name: Hearn, Jack
  last_name: Hearn
- first_name: Graham
  full_name: Stone, Graham
  last_name: Stone
- first_name: Lynsey
  full_name: Bunnefeld, Lynsey
  last_name: Bunnefeld
- first_name: James
  full_name: Nicholls, James
  last_name: Nicholls
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
- first_name: Konrad
  full_name: Lohse, Konrad
  last_name: Lohse
citation:
  ama: Hearn J, Stone G, Bunnefeld L, Nicholls J, Barton NH, Lohse K. Likelihood-based
    inference of population history from low-coverage de novo genome assemblies. <i>Molecular
    Ecology</i>. 2014;23(1):198-211. doi:<a href="https://doi.org/10.1111/mec.12578">10.1111/mec.12578</a>
  apa: Hearn, J., Stone, G., Bunnefeld, L., Nicholls, J., Barton, N. H., &#38; Lohse,
    K. (2014). Likelihood-based inference of population history from low-coverage
    de novo genome assemblies. <i>Molecular Ecology</i>. Wiley-Blackwell. <a href="https://doi.org/10.1111/mec.12578">https://doi.org/10.1111/mec.12578</a>
  chicago: Hearn, Jack, Graham Stone, Lynsey Bunnefeld, James Nicholls, Nicholas H
    Barton, and Konrad Lohse. “Likelihood-Based Inference of Population History from
    Low-Coverage de Novo Genome Assemblies.” <i>Molecular Ecology</i>. Wiley-Blackwell,
    2014. <a href="https://doi.org/10.1111/mec.12578">https://doi.org/10.1111/mec.12578</a>.
  ieee: J. Hearn, G. Stone, L. Bunnefeld, J. Nicholls, N. H. Barton, and K. Lohse,
    “Likelihood-based inference of population history from low-coverage de novo genome
    assemblies,” <i>Molecular Ecology</i>, vol. 23, no. 1. Wiley-Blackwell, pp. 198–211,
    2014.
  ista: Hearn J, Stone G, Bunnefeld L, Nicholls J, Barton NH, Lohse K. 2014. Likelihood-based
    inference of population history from low-coverage de novo genome assemblies. Molecular
    Ecology. 23(1), 198–211.
  mla: Hearn, Jack, et al. “Likelihood-Based Inference of Population History from
    Low-Coverage de Novo Genome Assemblies.” <i>Molecular Ecology</i>, vol. 23, no.
    1, Wiley-Blackwell, 2014, pp. 198–211, doi:<a href="https://doi.org/10.1111/mec.12578">10.1111/mec.12578</a>.
  short: J. Hearn, G. Stone, L. Bunnefeld, J. Nicholls, N.H. Barton, K. Lohse, Molecular
    Ecology 23 (2014) 198–211.
date_created: 2018-12-11T11:56:07Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2023-02-23T14:07:09Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1111/mec.12578
file:
- access_level: open_access
  checksum: 4de1ab255976a8ae77eb0e55ad62ecc9
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:07:52Z
  date_updated: 2020-07-14T12:45:31Z
  file_id: '4651'
  file_name: IST-2016-559-v1+1_Hearn_et_al.pdf
  file_size: 807444
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  checksum: 01a8073e071c088500425f910b0f1f71
  content_type: application/pdf
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  date_created: 2018-12-12T10:07:53Z
  date_updated: 2020-07-14T12:45:31Z
  file_id: '4652'
  file_name: IST-2016-559-v1+2_Hearn_et_al_Suppl.pdf
  file_size: 1518088
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file_date_updated: 2020-07-14T12:45:31Z
has_accepted_license: '1'
intvolume: '        23'
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Submitted Version
page: 198 - 211
publication: Molecular Ecology
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4814'
pubrep_id: '559'
quality_controlled: '1'
related_material:
  record:
  - id: '9754'
    relation: research_data
    status: public
scopus_import: 1
status: public
title: Likelihood-based inference of population history from low-coverage de novo
  genome assemblies
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2014'
...
---
_id: '2171'
abstract:
- lang: eng
  text: We present LS-CRF, a new method for training cyclic Conditional Random Fields
    (CRFs) from large datasets that is inspired by classical closed-form expressions
    for the maximum likelihood parameters of a generative graphical model with tree
    topology. Training a CRF with LS-CRF requires only solving a set of independent
    regression problems, each of which can be solved efficiently in closed form or
    by an iterative solver. This makes LS-CRF orders of magnitude faster than classical
    CRF training based on probabilistic inference, and at the same time more flexible
    and easier to implement than other approximate techniques, such as pseudolikelihood
    or piecewise training. We apply LS-CRF to the task of semantic image segmentation,
    showing that it achieves on par accuracy to other training techniques at higher
    speed, thereby allowing efficient CRF training from very large training sets.
    For example, training a linearly parameterized pairwise CRF on 150,000 images
    requires less than one hour on a modern workstation.
alternative_title:
- LNCS
author:
- first_name: Alexander
  full_name: Kolesnikov, Alexander
  id: 2D157DB6-F248-11E8-B48F-1D18A9856A87
  last_name: Kolesnikov
- first_name: Matthieu
  full_name: Guillaumin, Matthieu
  last_name: Guillaumin
- first_name: Vittorio
  full_name: Ferrari, Vittorio
  last_name: Ferrari
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Kolesnikov A, Guillaumin M, Ferrari V, Lampert C. Closed-form approximate
    CRF training for scalable image segmentation. In: Fleet D, Pajdla T, Schiele B,
    Tuytelaars T, eds. <i>Lecture Notes in Computer Science (Including Subseries Lecture
    Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)</i>. Vol
    8691. Springer; 2014:550-565. doi:<a href="https://doi.org/10.1007/978-3-319-10578-9_36">10.1007/978-3-319-10578-9_36</a>'
  apa: 'Kolesnikov, A., Guillaumin, M., Ferrari, V., &#38; Lampert, C. (2014). Closed-form
    approximate CRF training for scalable image segmentation. In D. Fleet, T. Pajdla,
    B. Schiele, &#38; T. Tuytelaars (Eds.), <i>Lecture Notes in Computer Science (including
    subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)</i>
    (Vol. 8691, pp. 550–565). Zurich, Switzerland: Springer. <a href="https://doi.org/10.1007/978-3-319-10578-9_36">https://doi.org/10.1007/978-3-319-10578-9_36</a>'
  chicago: Kolesnikov, Alexander, Matthieu Guillaumin, Vittorio Ferrari, and Christoph
    Lampert. “Closed-Form Approximate CRF Training for Scalable Image Segmentation.”
    In <i>Lecture Notes in Computer Science (Including Subseries Lecture Notes in
    Artificial Intelligence and Lecture Notes in Bioinformatics)</i>, edited by David
    Fleet, Tomas Pajdla, Bernt Schiele, and Tinne Tuytelaars, 8691:550–65. Springer,
    2014. <a href="https://doi.org/10.1007/978-3-319-10578-9_36">https://doi.org/10.1007/978-3-319-10578-9_36</a>.
  ieee: A. Kolesnikov, M. Guillaumin, V. Ferrari, and C. Lampert, “Closed-form approximate
    CRF training for scalable image segmentation,” in <i>Lecture Notes in Computer
    Science (including subseries Lecture Notes in Artificial Intelligence and Lecture
    Notes in Bioinformatics)</i>, Zurich, Switzerland, 2014, vol. 8691, no. PART 3,
    pp. 550–565.
  ista: 'Kolesnikov A, Guillaumin M, Ferrari V, Lampert C. 2014. Closed-form approximate
    CRF training for scalable image segmentation. Lecture Notes in Computer Science
    (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes
    in Bioinformatics). ECCV: European Conference on Computer Vision, LNCS, vol. 8691,
    550–565.'
  mla: Kolesnikov, Alexander, et al. “Closed-Form Approximate CRF Training for Scalable
    Image Segmentation.” <i>Lecture Notes in Computer Science (Including Subseries
    Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)</i>,
    edited by David Fleet et al., vol. 8691, no. PART 3, Springer, 2014, pp. 550–65,
    doi:<a href="https://doi.org/10.1007/978-3-319-10578-9_36">10.1007/978-3-319-10578-9_36</a>.
  short: A. Kolesnikov, M. Guillaumin, V. Ferrari, C. Lampert, in:, D. Fleet, T. Pajdla,
    B. Schiele, T. Tuytelaars (Eds.), Lecture Notes in Computer Science (Including
    Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),
    Springer, 2014, pp. 550–565.
conference:
  end_date: 2014-09-12
  location: Zurich, Switzerland
  name: 'ECCV: European Conference on Computer Vision'
  start_date: 2014-09-06
date_created: 2018-12-11T11:56:07Z
date_published: 2014-09-01T00:00:00Z
date_updated: 2021-01-12T06:55:46Z
day: '01'
department:
- _id: ChLa
doi: 10.1007/978-3-319-10578-9_36
ec_funded: 1
editor:
- first_name: David
  full_name: Fleet, David
  last_name: Fleet
- first_name: Tomas
  full_name: Pajdla, Tomas
  last_name: Pajdla
- first_name: Bernt
  full_name: Schiele, Bernt
  last_name: Schiele
- first_name: Tinne
  full_name: Tuytelaars, Tinne
  last_name: Tuytelaars
intvolume: '      8691'
issue: PART 3
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1403.7057
month: '09'
oa: 1
oa_version: Submitted Version
page: 550 - 565
project:
- _id: 2532554C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '308036'
  name: Lifelong Learning of Visual Scene Understanding
publication: Lecture Notes in Computer Science (including subseries Lecture Notes
  in Artificial Intelligence and Lecture Notes in Bioinformatics)
publication_status: published
publisher: Springer
publist_id: '4813'
quality_controlled: '1'
scopus_import: 1
status: public
title: Closed-form approximate CRF training for scalable image segmentation
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 8691
year: '2014'
...
---
_id: '2173'
abstract:
- lang: eng
  text: "In this work we introduce a new approach to co-classification, i.e. the task
    of jointly classifying multiple, otherwise independent, data samples. The method
    we present, named CoConut, is based on the idea of adding a regularizer in the
    label space to encode certain priors on the resulting labelings. A regularizer
    that encourages labelings that are smooth across the test set, for instance, can
    be seen as a test-time variant of the cluster assumption, which has been proven
    useful at training time in semi-supervised learning. A regularizer that introduces
    a preference for certain class proportions can be regarded as a prior distribution
    on the class labels. CoConut can build on existing classifiers without making
    any assumptions on how they were obtained and without the need to re-train them.
    The use of a regularizer adds a new level of flexibility. It allows the integration
    of potentially new information at test time, even in other modalities than what
    the classifiers were trained on. We evaluate our framework on six datasets, reporting
    a clear performance gain in classification accuracy compared to the standard classification
    setup that predicts labels for each test sample separately.\r\n"
author:
- first_name: Sameh
  full_name: Khamis, Sameh
  last_name: Khamis
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Khamis S, Lampert C. CoConut: Co-classification with output space regularization.
    In: <i>Proceedings of the British Machine Vision Conference 2014</i>. BMVA Press;
    2014.'
  apa: 'Khamis, S., &#38; Lampert, C. (2014). CoConut: Co-classification with output
    space regularization. In <i>Proceedings of the British Machine Vision Conference
    2014</i>. Nottingham, UK: BMVA Press.'
  chicago: 'Khamis, Sameh, and Christoph Lampert. “CoConut: Co-Classification with
    Output Space Regularization.” In <i>Proceedings of the British Machine Vision
    Conference 2014</i>. BMVA Press, 2014.'
  ieee: 'S. Khamis and C. Lampert, “CoConut: Co-classification with output space regularization,”
    in <i>Proceedings of the British Machine Vision Conference 2014</i>, Nottingham,
    UK, 2014.'
  ista: 'Khamis S, Lampert C. 2014. CoConut: Co-classification with output space regularization.
    Proceedings of the British Machine Vision Conference 2014. BMVC: British Machine
    Vision Conference.'
  mla: 'Khamis, Sameh, and Christoph Lampert. “CoConut: Co-Classification with Output
    Space Regularization.” <i>Proceedings of the British Machine Vision Conference
    2014</i>, BMVA Press, 2014.'
  short: S. Khamis, C. Lampert, in:, Proceedings of the British Machine Vision Conference
    2014, BMVA Press, 2014.
conference:
  end_date: 2014-09-05
  location: Nottingham, UK
  name: 'BMVC: British Machine Vision Conference'
  start_date: 2014-09-01
date_created: 2018-12-11T11:56:08Z
date_published: 2014-09-01T00:00:00Z
date_updated: 2021-01-12T06:55:46Z
day: '01'
ddc:
- '000'
department:
- _id: ChLa
ec_funded: 1
file:
- access_level: open_access
  checksum: c4c6d3efdb8ee648faf3e76849839ce2
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:08:23Z
  date_updated: 2020-07-14T12:45:31Z
  file_id: '4683'
  file_name: IST-2016-490-v1+1_khamis-bmvc2014.pdf
  file_size: 408172
  relation: main_file
file_date_updated: 2020-07-14T12:45:31Z
has_accepted_license: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 2532554C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '308036'
  name: Lifelong Learning of Visual Scene Understanding
publication: Proceedings of the British Machine Vision Conference 2014
publication_status: published
publisher: BMVA Press
publist_id: '4811'
pubrep_id: '490'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'CoConut: Co-classification with output space regularization'
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '2174'
abstract:
- lang: eng
  text: 'When polygenic traits are under stabilizing selection, many different combinations
    of alleles allow close adaptation to the optimum. If alleles have equal effects,
    all combinations that result in the same deviation from the optimum are equivalent.
    Furthermore, the genetic variance that is maintained by mutation-selection balance
    is 2μ/S per locus, where μ is the mutation rate and S the strength of stabilizing
    selection. In reality, alleles vary in their effects, making the fitness landscape
    asymmetric and complicating analysis of the equilibria. We show that that the
    resulting genetic variance depends on the fraction of alleles near fixation, which
    contribute by 2μ/S, and on the total mutational effects of alleles that are at
    intermediate frequency. The inpplayfi between stabilizing selection and mutation
    leads to a sharp transition: alleles with effects smaller than a threshold value
    of 2 remain polymorphic, whereas those with larger effects are fixed. The genetic
    load in equilibrium is less than for traits of equal effects, and the fitness
    equilibria are more similar. We find p the optimum is displaced, alleles with
    effects close to the threshold value sweep first, and their rate of increase is
    bounded by Long-term response leads in general to well-adapted traits, unlike
    the case of equal effects that often end up at a suboptimal fitness peak. However,
    the particular peaks to which the populations converge are extremely sensitive
    to the initial states and to the speed of the shift of the optimum trait value.'
author:
- first_name: Harold
  full_name: De Vladar, Harold
  last_name: De Vladar
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: De Vladar H, Barton NH. Stability and response of polygenic traits to stabilizing
    selection and mutation. <i>Genetics</i>. 2014;197(2):749-767. doi:<a href="https://doi.org/10.1534/genetics.113.159111">10.1534/genetics.113.159111</a>
  apa: De Vladar, H., &#38; Barton, N. H. (2014). Stability and response of polygenic
    traits to stabilizing selection and mutation. <i>Genetics</i>. Genetics Society
    of America. <a href="https://doi.org/10.1534/genetics.113.159111">https://doi.org/10.1534/genetics.113.159111</a>
  chicago: De Vladar, Harold, and Nicholas H Barton. “Stability and Response of Polygenic
    Traits to Stabilizing Selection and Mutation.” <i>Genetics</i>. Genetics Society
    of America, 2014. <a href="https://doi.org/10.1534/genetics.113.159111">https://doi.org/10.1534/genetics.113.159111</a>.
  ieee: H. De Vladar and N. H. Barton, “Stability and response of polygenic traits
    to stabilizing selection and mutation,” <i>Genetics</i>, vol. 197, no. 2. Genetics
    Society of America, pp. 749–767, 2014.
  ista: De Vladar H, Barton NH. 2014. Stability and response of polygenic traits to
    stabilizing selection and mutation. Genetics. 197(2), 749–767.
  mla: De Vladar, Harold, and Nicholas H. Barton. “Stability and Response of Polygenic
    Traits to Stabilizing Selection and Mutation.” <i>Genetics</i>, vol. 197, no.
    2, Genetics Society of America, 2014, pp. 749–67, doi:<a href="https://doi.org/10.1534/genetics.113.159111">10.1534/genetics.113.159111</a>.
  short: H. De Vladar, N.H. Barton, Genetics 197 (2014) 749–767.
date_created: 2018-12-11T11:56:08Z
date_published: 2014-06-01T00:00:00Z
date_updated: 2021-01-12T06:55:47Z
day: '01'
department:
- _id: NiBa
doi: 10.1534/genetics.113.159111
ec_funded: 1
intvolume: '       197'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1404.1017
month: '06'
oa: 1
oa_version: Submitted Version
page: 749 - 767
project:
- _id: 25B07788-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '250152'
  name: Limits to selection in biology and in evolutionary computation
publication: Genetics
publication_status: published
publisher: Genetics Society of America
publist_id: '4809'
quality_controlled: '1'
scopus_import: 1
status: public
title: Stability and response of polygenic traits to stabilizing selection and mutation
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 197
year: '2014'
...
---
_id: '2175'
abstract:
- lang: eng
  text: The cerebral cortex, the seat of our cognitive abilities, is composed of an
    intricate network of billions of excitatory projection and inhibitory interneurons.
    Postmitotic cortical neurons are generated by a diverse set of neural stem cell
    progenitors within dedicated zones and defined periods of neurogenesis during
    embryonic development. Disruptions in neurogenesis can lead to alterations in
    the neuronal cytoarchitecture, which is thought to represent a major underlying
    cause for several neurological disorders, including microcephaly, autism and epilepsy.
    Although a number of signaling pathways regulating neurogenesis have been described,
    the precise cellular and molecular mechanisms regulating the functional neural
    stem cell properties in cortical neurogenesis remain unclear. Here, we discuss
    the most up-to-date strategies to monitor the fundamental mechanistic parameters
    of neuronal progenitor proliferation, and recent advances deciphering the logic
    and dynamics of neurogenesis.
article_processing_charge: No
author:
- first_name: Maria P
  full_name: Postiglione, Maria P
  id: 2C67902A-F248-11E8-B48F-1D18A9856A87
  last_name: Postiglione
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
citation:
  ama: 'Postiglione MP, Hippenmeyer S. Monitoring neurogenesis in the cerebral cortex:
    an update. <i>Future Neurology</i>. 2014;9(3):323-340. doi:<a href="https://doi.org/10.2217/fnl.14.18">10.2217/fnl.14.18</a>'
  apa: 'Postiglione, M. P., &#38; Hippenmeyer, S. (2014). Monitoring neurogenesis
    in the cerebral cortex: an update. <i>Future Neurology</i>. Future Science Group.
    <a href="https://doi.org/10.2217/fnl.14.18">https://doi.org/10.2217/fnl.14.18</a>'
  chicago: 'Postiglione, Maria P, and Simon Hippenmeyer. “Monitoring Neurogenesis
    in the Cerebral Cortex: An Update.” <i>Future Neurology</i>. Future Science Group,
    2014. <a href="https://doi.org/10.2217/fnl.14.18">https://doi.org/10.2217/fnl.14.18</a>.'
  ieee: 'M. P. Postiglione and S. Hippenmeyer, “Monitoring neurogenesis in the cerebral
    cortex: an update,” <i>Future Neurology</i>, vol. 9, no. 3. Future Science Group,
    pp. 323–340, 2014.'
  ista: 'Postiglione MP, Hippenmeyer S. 2014. Monitoring neurogenesis in the cerebral
    cortex: an update. Future Neurology. 9(3), 323–340.'
  mla: 'Postiglione, Maria P., and Simon Hippenmeyer. “Monitoring Neurogenesis in
    the Cerebral Cortex: An Update.” <i>Future Neurology</i>, vol. 9, no. 3, Future
    Science Group, 2014, pp. 323–40, doi:<a href="https://doi.org/10.2217/fnl.14.18">10.2217/fnl.14.18</a>.'
  short: M.P. Postiglione, S. Hippenmeyer, Future Neurology 9 (2014) 323–340.
date_created: 2018-12-11T11:56:09Z
date_published: 2014-05-01T00:00:00Z
date_updated: 2023-10-17T08:34:27Z
day: '01'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.2217/fnl.14.18
ec_funded: 1
file:
- access_level: open_access
  checksum: ba06659ecadabceec9a37dd8c4586dce
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:10:25Z
  date_updated: 2020-07-14T12:45:31Z
  file_id: '4812'
  file_name: IST-2016-528-v1+1_fnl.14.18.pdf
  file_size: 3848424
  relation: main_file
file_date_updated: 2020-07-14T12:45:31Z
has_accepted_license: '1'
intvolume: '         9'
issue: '3'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 323 - 340
project:
- _id: 25D61E48-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '618444'
  name: Molecular Mechanisms of Cerebral Cortex Development
publication: Future Neurology
publication_identifier:
  eissn:
  - 1748-6971
  issn:
  - 1479-6708
publication_status: published
publisher: Future Science Group
publist_id: '4806'
pubrep_id: '528'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Monitoring neurogenesis in the cerebral cortex: an update'
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2014'
...
---
_id: '2178'
abstract:
- lang: eng
  text: We consider the three-state toric homogeneous Markov chain model (THMC) without
    loops and initial parameters. At time T, the size of the design matrix is 6 ×
    3 · 2T-1 and the convex hull of its columns is the model polytope. We study the
    behavior of this polytope for T ≥ 3 and we show that it is defined by 24 facets
    for all T ≥ 5. Moreover, we give a complete description of these facets. From
    this, we deduce that the toric ideal associated with the design matrix is generated
    by binomials of degree at most 6. Our proof is based on a result due to Sturmfels,
    who gave a bound on the degree of the generators of a toric ideal, provided the
    normality of the corresponding toric variety. In our setting, we established the
    normality of the toric variety associated to the THMC model by studying the geometric
    properties of the model polytope.
acknowledgement: Research of Martín del Campo supported in part by NSF Grant DMS-915211.
author:
- first_name: David
  full_name: Haws, David
  last_name: Haws
- first_name: Abraham
  full_name: Martin Del Campo Sanchez, Abraham
  id: 4CF47F6A-F248-11E8-B48F-1D18A9856A87
  last_name: Martin Del Campo Sanchez
- first_name: Akimichi
  full_name: Takemura, Akimichi
  last_name: Takemura
- first_name: Ruriko
  full_name: Yoshida, Ruriko
  last_name: Yoshida
citation:
  ama: Haws D, Martin del Campo Sanchez A, Takemura A, Yoshida R. Markov degree of
    the three-state toric homogeneous Markov chain model. <i>Beitrage zur Algebra
    und Geometrie</i>. 2014;55(1):161-188. doi:<a href="https://doi.org/10.1007/s13366-013-0178-y">10.1007/s13366-013-0178-y</a>
  apa: Haws, D., Martin del Campo Sanchez, A., Takemura, A., &#38; Yoshida, R. (2014).
    Markov degree of the three-state toric homogeneous Markov chain model. <i>Beitrage
    Zur Algebra Und Geometrie</i>. Springer. <a href="https://doi.org/10.1007/s13366-013-0178-y">https://doi.org/10.1007/s13366-013-0178-y</a>
  chicago: Haws, David, Abraham Martin del Campo Sanchez, Akimichi Takemura, and Ruriko
    Yoshida. “Markov Degree of the Three-State Toric Homogeneous Markov Chain Model.”
    <i>Beitrage Zur Algebra Und Geometrie</i>. Springer, 2014. <a href="https://doi.org/10.1007/s13366-013-0178-y">https://doi.org/10.1007/s13366-013-0178-y</a>.
  ieee: D. Haws, A. Martin del Campo Sanchez, A. Takemura, and R. Yoshida, “Markov
    degree of the three-state toric homogeneous Markov chain model,” <i>Beitrage zur
    Algebra und Geometrie</i>, vol. 55, no. 1. Springer, pp. 161–188, 2014.
  ista: Haws D, Martin del Campo Sanchez A, Takemura A, Yoshida R. 2014. Markov degree
    of the three-state toric homogeneous Markov chain model. Beitrage zur Algebra
    und Geometrie. 55(1), 161–188.
  mla: Haws, David, et al. “Markov Degree of the Three-State Toric Homogeneous Markov
    Chain Model.” <i>Beitrage Zur Algebra Und Geometrie</i>, vol. 55, no. 1, Springer,
    2014, pp. 161–88, doi:<a href="https://doi.org/10.1007/s13366-013-0178-y">10.1007/s13366-013-0178-y</a>.
  short: D. Haws, A. Martin del Campo Sanchez, A. Takemura, R. Yoshida, Beitrage Zur
    Algebra Und Geometrie 55 (2014) 161–188.
date_created: 2018-12-11T11:56:10Z
date_published: 2014-03-01T00:00:00Z
date_updated: 2021-01-12T06:55:48Z
day: '01'
department:
- _id: CaUh
doi: 10.1007/s13366-013-0178-y
intvolume: '        55'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1204.3070
month: '03'
oa: 1
oa_version: Submitted Version
page: 161 - 188
publication: Beitrage zur Algebra und Geometrie
publication_status: published
publisher: Springer
publist_id: '4804'
quality_controlled: '1'
scopus_import: 1
status: public
title: Markov degree of the three-state toric homogeneous Markov chain model
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 55
year: '2014'
...
---
_id: '2179'
abstract:
- lang: eng
  text: We extend the proof of the local semicircle law for generalized Wigner matrices
    given in MR3068390 to the case when the matrix of variances has an eigenvalue
    -1. In particular, this result provides a short proof of the optimal local Marchenko-Pastur
    law at the hard edge (i.e. around zero) for sample covariance matrices X*X, where
    the variances of the entries of X may vary.
author:
- first_name: Oskari H
  full_name: Ajanki, Oskari H
  id: 36F2FB7E-F248-11E8-B48F-1D18A9856A87
  last_name: Ajanki
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Torben H
  full_name: Krüger, Torben H
  id: 3020C786-F248-11E8-B48F-1D18A9856A87
  last_name: Krüger
  orcid: 0000-0002-4821-3297
citation:
  ama: Ajanki OH, Erdös L, Krüger TH. Local semicircle law with imprimitive variance
    matrix. <i>Electronic Communications in Probability</i>. 2014;19. doi:<a href="https://doi.org/10.1214/ECP.v19-3121">10.1214/ECP.v19-3121</a>
  apa: Ajanki, O. H., Erdös, L., &#38; Krüger, T. H. (2014). Local semicircle law
    with imprimitive variance matrix. <i>Electronic Communications in Probability</i>.
    Institute of Mathematical Statistics. <a href="https://doi.org/10.1214/ECP.v19-3121">https://doi.org/10.1214/ECP.v19-3121</a>
  chicago: Ajanki, Oskari H, László Erdös, and Torben H Krüger. “Local Semicircle
    Law with Imprimitive Variance Matrix.” <i>Electronic Communications in Probability</i>.
    Institute of Mathematical Statistics, 2014. <a href="https://doi.org/10.1214/ECP.v19-3121">https://doi.org/10.1214/ECP.v19-3121</a>.
  ieee: O. H. Ajanki, L. Erdös, and T. H. Krüger, “Local semicircle law with imprimitive
    variance matrix,” <i>Electronic Communications in Probability</i>, vol. 19. Institute
    of Mathematical Statistics, 2014.
  ista: Ajanki OH, Erdös L, Krüger TH. 2014. Local semicircle law with imprimitive
    variance matrix. Electronic Communications in Probability. 19.
  mla: Ajanki, Oskari H., et al. “Local Semicircle Law with Imprimitive Variance Matrix.”
    <i>Electronic Communications in Probability</i>, vol. 19, Institute of Mathematical
    Statistics, 2014, doi:<a href="https://doi.org/10.1214/ECP.v19-3121">10.1214/ECP.v19-3121</a>.
  short: O.H. Ajanki, L. Erdös, T.H. Krüger, Electronic Communications in Probability
    19 (2014).
date_created: 2018-12-11T11:56:10Z
date_published: 2014-06-09T00:00:00Z
date_updated: 2021-01-12T06:55:48Z
day: '09'
ddc:
- '570'
department:
- _id: LaEr
doi: 10.1214/ECP.v19-3121
file:
- access_level: open_access
  checksum: bd8a041c76d62fe820bf73ff13ce7d1b
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:09:06Z
  date_updated: 2020-07-14T12:45:31Z
  file_id: '4729'
  file_name: IST-2016-426-v1+1_3121-17518-1-PB.pdf
  file_size: 327322
  relation: main_file
file_date_updated: 2020-07-14T12:45:31Z
has_accepted_license: '1'
intvolume: '        19'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: Electronic Communications in Probability
publication_status: published
publisher: Institute of Mathematical Statistics
publist_id: '4803'
pubrep_id: '426'
quality_controlled: '1'
scopus_import: 1
status: public
title: Local semicircle law with imprimitive variance matrix
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 19
year: '2014'
...
---
_id: '2180'
abstract:
- lang: eng
  text: Weighted majority votes allow one to combine the output of several classifiers
    or voters. MinCq is a recent algorithm for optimizing the weight of each voter
    based on the minimization of a theoretical bound over the risk of the vote with
    elegant PAC-Bayesian generalization guarantees. However, while it has demonstrated
    good performance when combining weak classifiers, MinCq cannot make use of the
    useful a priori knowledge that one may have when using a mixture of weak and strong
    voters. In this paper, we propose P-MinCq, an extension of MinCq that can incorporate
    such knowledge in the form of a  constraint over the distribution of the weights,
    along with general proofs of convergence that stand in the sample compression
    setting for data-dependent voters. The approach is applied to a vote of k-NN classifiers
    with a specific modeling of the voters' performance. P-MinCq significantly outperforms
    the classic k-NN classifier, a symmetric NN and MinCq using the same voters. We
    show that it is also competitive with LMNN, a popular metric learning algorithm,
    and that combining both approaches further reduces the error.
acknowledgement: 'This work was funded by the French project SoLSTiCe ANR-13-BS02-01
  of the ANR. '
author:
- first_name: Aurélien
  full_name: Bellet, Aurélien
  last_name: Bellet
- first_name: Amaury
  full_name: Habrard, Amaury
  last_name: Habrard
- first_name: Emilie
  full_name: Morvant, Emilie
  id: 4BAC2A72-F248-11E8-B48F-1D18A9856A87
  last_name: Morvant
  orcid: 0000-0002-8301-7240
- first_name: Marc
  full_name: Sebban, Marc
  last_name: Sebban
citation:
  ama: Bellet A, Habrard A, Morvant E, Sebban M. Learning a priori constrained weighted
    majority votes. <i>Machine Learning</i>. 2014;97(1-2):129-154. doi:<a href="https://doi.org/10.1007/s10994-014-5462-z">10.1007/s10994-014-5462-z</a>
  apa: Bellet, A., Habrard, A., Morvant, E., &#38; Sebban, M. (2014). Learning a priori
    constrained weighted majority votes. <i>Machine Learning</i>. Springer. <a href="https://doi.org/10.1007/s10994-014-5462-z">https://doi.org/10.1007/s10994-014-5462-z</a>
  chicago: Bellet, Aurélien, Amaury Habrard, Emilie Morvant, and Marc Sebban. “Learning
    a Priori Constrained Weighted Majority Votes.” <i>Machine Learning</i>. Springer,
    2014. <a href="https://doi.org/10.1007/s10994-014-5462-z">https://doi.org/10.1007/s10994-014-5462-z</a>.
  ieee: A. Bellet, A. Habrard, E. Morvant, and M. Sebban, “Learning a priori constrained
    weighted majority votes,” <i>Machine Learning</i>, vol. 97, no. 1–2. Springer,
    pp. 129–154, 2014.
  ista: Bellet A, Habrard A, Morvant E, Sebban M. 2014. Learning a priori constrained
    weighted majority votes. Machine Learning. 97(1–2), 129–154.
  mla: Bellet, Aurélien, et al. “Learning a Priori Constrained Weighted Majority Votes.”
    <i>Machine Learning</i>, vol. 97, no. 1–2, Springer, 2014, pp. 129–54, doi:<a
    href="https://doi.org/10.1007/s10994-014-5462-z">10.1007/s10994-014-5462-z</a>.
  short: A. Bellet, A. Habrard, E. Morvant, M. Sebban, Machine Learning 97 (2014)
    129–154.
date_created: 2018-12-11T11:56:10Z
date_published: 2014-10-01T00:00:00Z
date_updated: 2021-01-12T06:55:49Z
day: '01'
department:
- _id: ChLa
doi: 10.1007/s10994-014-5462-z
ec_funded: 1
intvolume: '        97'
issue: 1-2
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://hal.archives-ouvertes.fr/hal-01009578/document
month: '10'
oa: 1
oa_version: Submitted Version
page: 129 - 154
project:
- _id: 2532554C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '308036'
  name: Lifelong Learning of Visual Scene Understanding
publication: Machine Learning
publication_status: published
publisher: Springer
publist_id: '4802'
quality_controlled: '1'
scopus_import: 1
status: public
title: Learning a priori constrained weighted majority votes
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 97
year: '2014'
...
---
_id: '2183'
abstract:
- lang: eng
  text: 'We describe a simple adaptive network of coupled chaotic maps. The network
    reaches a stationary state (frozen topology) for all values of the coupling parameter,
    although the dynamics of the maps at the nodes of the network can be nontrivial.
    The structure of the network shows interesting hierarchical properties and in
    certain parameter regions the dynamics is polysynchronous: Nodes can be divided
    in differently synchronized classes but, contrary to cluster synchronization,
    nodes in the same class need not be connected to each other. These complicated
    synchrony patterns have been conjectured to play roles in systems biology and
    circuits. The adaptive system we study describes ways whereby this behavior can
    evolve from undifferentiated nodes.'
acknowledgement: "V.B.S. is partially supported by contract MEC (Grant No. AYA2010-22111-C03-02).\r\n"
article_number: '062809'
article_processing_charge: No
author:
- first_name: Vicente
  full_name: Botella Soler, Vicente
  id: 421234E8-F248-11E8-B48F-1D18A9856A87
  last_name: Botella Soler
  orcid: 0000-0002-8790-1914
- first_name: Paul
  full_name: Glendinning, Paul
  last_name: Glendinning
citation:
  ama: Botella Soler V, Glendinning P. Hierarchy and polysynchrony in an adaptive
    network . <i>Physical Review E Statistical Nonlinear and Soft Matter Physics</i>.
    2014;89(6). doi:<a href="https://doi.org/10.1103/PhysRevE.89.062809">10.1103/PhysRevE.89.062809</a>
  apa: Botella Soler, V., &#38; Glendinning, P. (2014). Hierarchy and polysynchrony
    in an adaptive network . <i>Physical Review E Statistical Nonlinear and Soft Matter
    Physics</i>. American Institute of Physics. <a href="https://doi.org/10.1103/PhysRevE.89.062809">https://doi.org/10.1103/PhysRevE.89.062809</a>
  chicago: Botella Soler, Vicente, and Paul Glendinning. “Hierarchy and Polysynchrony
    in an Adaptive Network .” <i>Physical Review E Statistical Nonlinear and Soft
    Matter Physics</i>. American Institute of Physics, 2014. <a href="https://doi.org/10.1103/PhysRevE.89.062809">https://doi.org/10.1103/PhysRevE.89.062809</a>.
  ieee: V. Botella Soler and P. Glendinning, “Hierarchy and polysynchrony in an adaptive
    network ,” <i>Physical Review E Statistical Nonlinear and Soft Matter Physics</i>,
    vol. 89, no. 6. American Institute of Physics, 2014.
  ista: Botella Soler V, Glendinning P. 2014. Hierarchy and polysynchrony in an adaptive
    network . Physical Review E Statistical Nonlinear and Soft Matter Physics. 89(6),
    062809.
  mla: Botella Soler, Vicente, and Paul Glendinning. “Hierarchy and Polysynchrony
    in an Adaptive Network .” <i>Physical Review E Statistical Nonlinear and Soft
    Matter Physics</i>, vol. 89, no. 6, 062809, American Institute of Physics, 2014,
    doi:<a href="https://doi.org/10.1103/PhysRevE.89.062809">10.1103/PhysRevE.89.062809</a>.
  short: V. Botella Soler, P. Glendinning, Physical Review E Statistical Nonlinear
    and Soft Matter Physics 89 (2014).
date_created: 2018-12-11T11:56:11Z
date_published: 2014-06-16T00:00:00Z
date_updated: 2022-08-25T14:04:45Z
day: '16'
department:
- _id: GaTk
doi: 10.1103/PhysRevE.89.062809
ec_funded: 1
intvolume: '        89'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1403.3209
month: '06'
oa: 1
oa_version: Preprint
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Physical Review E Statistical Nonlinear and Soft Matter Physics
publication_status: published
publisher: American Institute of Physics
publist_id: '4798'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Hierarchy and polysynchrony in an adaptive network '
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 89
year: '2014'
...
---
_id: '2184'
abstract:
- lang: eng
  text: 'Given topological spaces X,Y, a fundamental problem of algebraic topology
    is understanding the structure of all continuous maps X→ Y. We consider a computational
    version, where X,Y are given as finite simplicial complexes, and the goal is to
    compute [X,Y], that is, all homotopy classes of suchmaps.We solve this problem
    in the stable range, where for some d ≥ 2, we have dim X ≤ 2d-2 and Y is (d-1)-connected;
    in particular, Y can be the d-dimensional sphere Sd. The algorithm combines classical
    tools and ideas from homotopy theory (obstruction theory, Postnikov systems, and
    simplicial sets) with algorithmic tools from effective algebraic topology (locally
    effective simplicial sets and objects with effective homology). In contrast, [X,Y]
    is known to be uncomputable for general X,Y, since for X = S1 it includes a well
    known undecidable problem: testing triviality of the fundamental group of Y. In
    follow-up papers, the algorithm is shown to run in polynomial time for d fixed,
    and extended to other problems, such as the extension problem, where we are given
    a subspace A ⊂ X and a map A→ Y and ask whether it extends to a map X → Y, or
    computing the Z2-index-everything in the stable range. Outside the stable range,
    the extension problem is undecidable.'
acknowledgement: The research by M. K. was supported by project GAUK 49209. The research
  by M. K. was also supported by project 1M0545 by the Ministry of Education of the
  Czech Republic and by Center of Excellence { Inst. for Theor. Comput. Sci., Prague
  (project P202/12/G061 of GACR). The research by U. W. was supported by the Swiss
  National Science Foundation (SNF Projects 200021-125309, 200020-138230, and PP00P2-138948).
article_number: '17 '
author:
- first_name: Martin
  full_name: Čadek, Martin
  last_name: Čadek
- first_name: Marek
  full_name: Krcál, Marek
  id: 33E21118-F248-11E8-B48F-1D18A9856A87
  last_name: Krcál
- first_name: Jiří
  full_name: Matoušek, Jiří
  last_name: Matoušek
- first_name: Francis
  full_name: Sergeraert, Francis
  last_name: Sergeraert
- first_name: Lukáš
  full_name: Vokřínek, Lukáš
  last_name: Vokřínek
- first_name: Uli
  full_name: Wagner, Uli
  id: 36690CA2-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
  orcid: 0000-0002-1494-0568
citation:
  ama: Čadek M, Krcál M, Matoušek J, Sergeraert F, Vokřínek L, Wagner U. Computing
    all maps into a sphere. <i>Journal of the ACM</i>. 2014;61(3). doi:<a href="https://doi.org/10.1145/2597629">10.1145/2597629</a>
  apa: Čadek, M., Krcál, M., Matoušek, J., Sergeraert, F., Vokřínek, L., &#38; Wagner,
    U. (2014). Computing all maps into a sphere. <i>Journal of the ACM</i>. ACM. <a
    href="https://doi.org/10.1145/2597629">https://doi.org/10.1145/2597629</a>
  chicago: Čadek, Martin, Marek Krcál, Jiří Matoušek, Francis Sergeraert, Lukáš Vokřínek,
    and Uli Wagner. “Computing All Maps into a Sphere.” <i>Journal of the ACM</i>.
    ACM, 2014. <a href="https://doi.org/10.1145/2597629">https://doi.org/10.1145/2597629</a>.
  ieee: M. Čadek, M. Krcál, J. Matoušek, F. Sergeraert, L. Vokřínek, and U. Wagner,
    “Computing all maps into a sphere,” <i>Journal of the ACM</i>, vol. 61, no. 3.
    ACM, 2014.
  ista: Čadek M, Krcál M, Matoušek J, Sergeraert F, Vokřínek L, Wagner U. 2014. Computing
    all maps into a sphere. Journal of the ACM. 61(3), 17.
  mla: Čadek, Martin, et al. “Computing All Maps into a Sphere.” <i>Journal of the
    ACM</i>, vol. 61, no. 3, 17, ACM, 2014, doi:<a href="https://doi.org/10.1145/2597629">10.1145/2597629</a>.
  short: M. Čadek, M. Krcál, J. Matoušek, F. Sergeraert, L. Vokřínek, U. Wagner, Journal
    of the ACM 61 (2014).
date_created: 2018-12-11T11:56:12Z
date_published: 2014-05-01T00:00:00Z
date_updated: 2021-01-12T06:55:50Z
day: '01'
department:
- _id: UlWa
- _id: HeEd
doi: 10.1145/2597629
intvolume: '        61'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1105.6257
month: '05'
oa: 1
oa_version: Preprint
publication: Journal of the ACM
publication_status: published
publisher: ACM
publist_id: '4797'
quality_controlled: '1'
scopus_import: 1
status: public
title: Computing all maps into a sphere
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 61
year: '2014'
...
