---
_id: '747'
abstract:
- lang: eng
  text: Bradykinin (BK), a component of the kallikrein-kininogen-kinin system exerts
    multiple effects via B1 and B2 receptor activation. In the cardiovascular system,
    bradykinin has cardioprotective and vasodilator properties. We investigated the
    effect of BK on cardiac-projecting neurons of nucleus ambiguus, a key site for
    the parasympathetic cardiac regulation. BK produced a dose-dependent increase
    in cytosolic Ca2+ concentration. Pretreatment with HOE140, a B2 receptor antagonist,
    but not with R715, a B1 receptor antagonist, abolished the response to BK. A selective
    B2 receptor agonist, but not a B1 receptor agonist, elicited an increase in cytosolic
    Ca2+ similarly to BK. Inhibition of N-type voltage-gated Ca2+ channels with ω-conotoxin
    GVIA had no effect on the Ca2+ signal produced by BK, while pretreatment with
    ω-conotoxin MVIIC, a blocker of P/Q-type of Ca2+ channels, significantly diminished
    the effect of BK. Pretreatment with xestospongin C and 2-aminoethoxydiphenyl borate,
    antagonists of inositol 1,4,5-trisphosphate receptors, abolished the response
    to BK. Inhibition of ryanodine receptors reduced the BK-induced Ca2+ increase,
    while disruption of lysosomal Ca2+ stores with bafilomycin A1 did not affect the
    response. BK produced a dose-dependent depolarization of nucleus ambiguus neurons,
    which was prevented by the B2 receptor antagonist. In vivo studies indicate that
    microinjection of BK into nucleus ambiguus elicited bradycardia in conscious rats
    via B2 receptors. In summary, in cardiac vagal neurons of nucleus ambiguus, BK
    activates B2 receptors promoting Ca2+ influx and Ca2+ release from endoplasmic
    reticulum, and membrane depolarization; these effects are translated in vivo by
    bradycardia.
article_processing_charge: No
article_type: original
author:
- first_name: Eugen
  full_name: Brǎiloiu, Eugen
  last_name: Brǎiloiu
- first_name: Matthew
  full_name: Mcguire, Matthew
  last_name: Mcguire
- first_name: Shadaria
  full_name: Shuler, Shadaria
  last_name: Shuler
- first_name: Elena
  full_name: Deliu, Elena
  id: 37A40D7E-F248-11E8-B48F-1D18A9856A87
  last_name: Deliu
  orcid: 0000-0002-7370-5293
- first_name: Jeffrey
  full_name: Barr, Jeffrey
  last_name: Barr
- first_name: Mary
  full_name: Abood, Mary
  last_name: Abood
- first_name: Gabriela
  full_name: Brailoiu, Gabriela
  last_name: Brailoiu
citation:
  ama: Brǎiloiu E, Mcguire M, Shuler S, et al. Modulation of cardiac vagal tone by
    bradykinin acting on nucleus ambiguus. <i>Neuroscience</i>. 2017;365:23-32. doi:<a
    href="https://doi.org/10.1016/j.neuroscience.2017.09.034">10.1016/j.neuroscience.2017.09.034</a>
  apa: Brǎiloiu, E., Mcguire, M., Shuler, S., Deliu, E., Barr, J., Abood, M., &#38;
    Brailoiu, G. (2017). Modulation of cardiac vagal tone by bradykinin acting on
    nucleus ambiguus. <i>Neuroscience</i>. Elsevier. <a href="https://doi.org/10.1016/j.neuroscience.2017.09.034">https://doi.org/10.1016/j.neuroscience.2017.09.034</a>
  chicago: Brǎiloiu, Eugen, Matthew Mcguire, Shadaria Shuler, Elena Deliu, Jeffrey
    Barr, Mary Abood, and Gabriela Brailoiu. “Modulation of Cardiac Vagal Tone by
    Bradykinin Acting on Nucleus Ambiguus.” <i>Neuroscience</i>. Elsevier, 2017. <a
    href="https://doi.org/10.1016/j.neuroscience.2017.09.034">https://doi.org/10.1016/j.neuroscience.2017.09.034</a>.
  ieee: E. Brǎiloiu <i>et al.</i>, “Modulation of cardiac vagal tone by bradykinin
    acting on nucleus ambiguus,” <i>Neuroscience</i>, vol. 365. Elsevier, pp. 23–32,
    2017.
  ista: Brǎiloiu E, Mcguire M, Shuler S, Deliu E, Barr J, Abood M, Brailoiu G. 2017.
    Modulation of cardiac vagal tone by bradykinin acting on nucleus ambiguus. Neuroscience.
    365, 23–32.
  mla: Brǎiloiu, Eugen, et al. “Modulation of Cardiac Vagal Tone by Bradykinin Acting
    on Nucleus Ambiguus.” <i>Neuroscience</i>, vol. 365, Elsevier, 2017, pp. 23–32,
    doi:<a href="https://doi.org/10.1016/j.neuroscience.2017.09.034">10.1016/j.neuroscience.2017.09.034</a>.
  short: E. Brǎiloiu, M. Mcguire, S. Shuler, E. Deliu, J. Barr, M. Abood, G. Brailoiu,
    Neuroscience 365 (2017) 23–32.
date_created: 2018-12-11T11:48:17Z
date_published: 2017-12-04T00:00:00Z
date_updated: 2023-09-27T12:26:59Z
day: '04'
department:
- _id: GaNo
doi: 10.1016/j.neuroscience.2017.09.034
external_id:
  isi:
  - '000415966200003'
  pmid:
  - '28951324'
intvolume: '       365'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5798458
month: '12'
oa: 1
oa_version: Submitted Version
page: 23 - 32
pmid: 1
publication: Neuroscience
publication_identifier:
  issn:
  - '03064522'
publication_status: published
publisher: Elsevier
publist_id: '6911'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Modulation of cardiac vagal tone by bradykinin acting on nucleus ambiguus
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 365
year: '2017'
...
---
_id: '749'
abstract:
- lang: eng
  text: 'Synaptotagmin 7 (Syt7) is thought to be a Ca2+ sensor that mediates asynchronous
    transmitter release and facilitation at synapses. However, Syt7 is strongly expressed
    in fast-spiking, parvalbumin-expressing GABAergic interneurons, and the output
    synapses of these neurons produce only minimal asynchronous release and show depression
    rather than facilitation. To resolve this apparent contradiction, we examined
    the effects of genetic elimination of Syt7 on synaptic transmission at the GABAergic
    basket cell (BC)-Purkinje cell (PC) synapse in cerebellum. Our results indicate
    that at the BC-PC synapse, Syt7 contributes to asynchronous release, pool replenishment,
    and facilitation. In combination, these three effects ensure efficient transmitter
    release during high-frequency activity and guarantee frequency independence of
    inhibition. Our results identify a distinct function of Syt7: ensuring the efficiency
    of high-frequency inhibitory synaptic transmission'
acknowledged_ssus:
- _id: PreCl
article_processing_charge: No
author:
- first_name: Chong
  full_name: Chen, Chong
  id: 3DFD581A-F248-11E8-B48F-1D18A9856A87
  last_name: Chen
- first_name: Rachel
  full_name: Satterfield, Rachel
  last_name: Satterfield
- first_name: Samuel
  full_name: Young, Samuel
  last_name: Young
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
citation:
  ama: Chen C, Satterfield R, Young S, Jonas PM. Triple function of Synaptotagmin
    7 ensures efficiency of high-frequency transmission at central GABAergic synapses.
    <i>Cell Reports</i>. 2017;21(8):2082-2089. doi:<a href="https://doi.org/10.1016/j.celrep.2017.10.122">10.1016/j.celrep.2017.10.122</a>
  apa: Chen, C., Satterfield, R., Young, S., &#38; Jonas, P. M. (2017). Triple function
    of Synaptotagmin 7 ensures efficiency of high-frequency transmission at central
    GABAergic synapses. <i>Cell Reports</i>. Cell Press. <a href="https://doi.org/10.1016/j.celrep.2017.10.122">https://doi.org/10.1016/j.celrep.2017.10.122</a>
  chicago: Chen, Chong, Rachel Satterfield, Samuel Young, and Peter M Jonas. “Triple
    Function of Synaptotagmin 7 Ensures Efficiency of High-Frequency Transmission
    at Central GABAergic Synapses.” <i>Cell Reports</i>. Cell Press, 2017. <a href="https://doi.org/10.1016/j.celrep.2017.10.122">https://doi.org/10.1016/j.celrep.2017.10.122</a>.
  ieee: C. Chen, R. Satterfield, S. Young, and P. M. Jonas, “Triple function of Synaptotagmin
    7 ensures efficiency of high-frequency transmission at central GABAergic synapses,”
    <i>Cell Reports</i>, vol. 21, no. 8. Cell Press, pp. 2082–2089, 2017.
  ista: Chen C, Satterfield R, Young S, Jonas PM. 2017. Triple function of Synaptotagmin
    7 ensures efficiency of high-frequency transmission at central GABAergic synapses.
    Cell Reports. 21(8), 2082–2089.
  mla: Chen, Chong, et al. “Triple Function of Synaptotagmin 7 Ensures Efficiency
    of High-Frequency Transmission at Central GABAergic Synapses.” <i>Cell Reports</i>,
    vol. 21, no. 8, Cell Press, 2017, pp. 2082–89, doi:<a href="https://doi.org/10.1016/j.celrep.2017.10.122">10.1016/j.celrep.2017.10.122</a>.
  short: C. Chen, R. Satterfield, S. Young, P.M. Jonas, Cell Reports 21 (2017) 2082–2089.
date_created: 2018-12-11T11:48:18Z
date_published: 2017-11-21T00:00:00Z
date_updated: 2023-09-27T12:26:04Z
day: '21'
ddc:
- '570'
- '571'
department:
- _id: PeJo
doi: 10.1016/j.celrep.2017.10.122
ec_funded: 1
external_id:
  isi:
  - '000416216700007'
file:
- access_level: open_access
  checksum: a6afa3764909bf6edafa07982d8e1cee
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:09:14Z
  date_updated: 2020-07-14T12:47:59Z
  file_id: '4737'
  file_name: IST-2017-874-v1+1_PIIS2211124717316029.pdf
  file_size: 2759195
  relation: main_file
file_date_updated: 2020-07-14T12:47:59Z
has_accepted_license: '1'
intvolume: '        21'
isi: 1
issue: '8'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '11'
oa: 1
oa_version: Published Version
page: 2082 - 2089
project:
- _id: 25C26B1E-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P24909-B24
  name: Mechanisms of transmitter release at GABAergic synapses
- _id: 25B7EB9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '692692'
  name: Biophysics and circuit function of a giant cortical glumatergic synapse
publication: Cell Reports
publication_identifier:
  issn:
  - '22111247'
publication_status: published
publisher: Cell Press
publist_id: '6907'
pubrep_id: '874'
quality_controlled: '1'
related_material:
  record:
  - id: '324'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Triple function of Synaptotagmin 7 ensures efficiency of high-frequency transmission
  at central GABAergic synapses
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 21
year: '2017'
...
---
_id: '751'
abstract:
- lang: eng
  text: The basement membrane (BM) is a thin layer of extracellular matrix (ECM) beneath
    nearly all epithelial cell types that is critical for cellular and tissue function.
    It is composed of numerous components conserved among all bilaterians [1]; however,
    it is unknown how all of these components are generated and subsequently constructed
    to form a fully mature BM in the living animal. Although BM formation is thought
    to simply involve a process of self-assembly [2], this concept suffers from a
    number of logistical issues when considering its construction in vivo. First,
    incorporation of BM components appears to be hierarchical [3-5], yet it is unclear
    whether their production during embryogenesis must also be regulated in a temporal
    fashion. Second, many BM proteins are produced not only by the cells residing
    on the BM but also by surrounding cell types [6-9], and it is unclear how large,
    possibly insoluble protein complexes [10] are delivered into the matrix. Here
    we exploit our ability to live image and genetically dissect de novo BM formation
    during Drosophila development. This reveals that there is a temporal hierarchy
    of BM protein production that is essential for proper component incorporation.
    Furthermore, we show that BM components require secretion by migrating macrophages
    (hemocytes) during their developmental dispersal, which is critical for embryogenesis.
    Indeed, hemocyte migration is essential to deliver a subset of ECM components
    evenly throughout the embryo. This reveals that de novo BM construction requires
    a combination of both production and distribution logistics allowing for the timely
    delivery of core components.
article_processing_charge: No
author:
- first_name: Yutaka
  full_name: Matsubayashi, Yutaka
  last_name: Matsubayashi
- first_name: Adam
  full_name: Louani, Adam
  last_name: Louani
- first_name: Anca
  full_name: Dragu, Anca
  last_name: Dragu
- first_name: Besaiz
  full_name: Sanchez Sanchez, Besaiz
  last_name: Sanchez Sanchez
- first_name: Eduardo
  full_name: Serna Morales, Eduardo
  last_name: Serna Morales
- first_name: Lawrence
  full_name: Yolland, Lawrence
  last_name: Yolland
- first_name: Attila
  full_name: György, Attila
  id: 3BCEDBE0-F248-11E8-B48F-1D18A9856A87
  last_name: György
  orcid: 0000-0002-1819-198X
- first_name: Gema
  full_name: Vizcay, Gema
  last_name: Vizcay
- first_name: Roland
  full_name: Fleck, Roland
  last_name: Fleck
- first_name: John
  full_name: Heddleston, John
  last_name: Heddleston
- first_name: Teng
  full_name: Chew, Teng
  last_name: Chew
- first_name: Daria E
  full_name: Siekhaus, Daria E
  id: 3D224B9E-F248-11E8-B48F-1D18A9856A87
  last_name: Siekhaus
  orcid: 0000-0001-8323-8353
- first_name: Brian
  full_name: Stramer, Brian
  last_name: Stramer
citation:
  ama: Matsubayashi Y, Louani A, Dragu A, et al. A moving source of matrix components
    is essential for De Novo basement membrane formation. <i>Current Biology</i>.
    2017;27(22):3526-3534e.4. doi:<a href="https://doi.org/10.1016/j.cub.2017.10.001">10.1016/j.cub.2017.10.001</a>
  apa: Matsubayashi, Y., Louani, A., Dragu, A., Sanchez Sanchez, B., Serna Morales,
    E., Yolland, L., … Stramer, B. (2017). A moving source of matrix components is
    essential for De Novo basement membrane formation. <i>Current Biology</i>. Cell
    Press. <a href="https://doi.org/10.1016/j.cub.2017.10.001">https://doi.org/10.1016/j.cub.2017.10.001</a>
  chicago: Matsubayashi, Yutaka, Adam Louani, Anca Dragu, Besaiz Sanchez Sanchez,
    Eduardo Serna Morales, Lawrence Yolland, Attila György, et al. “A Moving Source
    of Matrix Components Is Essential for De Novo Basement Membrane Formation.” <i>Current
    Biology</i>. Cell Press, 2017. <a href="https://doi.org/10.1016/j.cub.2017.10.001">https://doi.org/10.1016/j.cub.2017.10.001</a>.
  ieee: Y. Matsubayashi <i>et al.</i>, “A moving source of matrix components is essential
    for De Novo basement membrane formation,” <i>Current Biology</i>, vol. 27, no.
    22. Cell Press, p. 3526–3534e.4, 2017.
  ista: Matsubayashi Y, Louani A, Dragu A, Sanchez Sanchez B, Serna Morales E, Yolland
    L, György A, Vizcay G, Fleck R, Heddleston J, Chew T, Siekhaus DE, Stramer B.
    2017. A moving source of matrix components is essential for De Novo basement membrane
    formation. Current Biology. 27(22), 3526–3534e.4.
  mla: Matsubayashi, Yutaka, et al. “A Moving Source of Matrix Components Is Essential
    for De Novo Basement Membrane Formation.” <i>Current Biology</i>, vol. 27, no.
    22, Cell Press, 2017, p. 3526–3534e.4, doi:<a href="https://doi.org/10.1016/j.cub.2017.10.001">10.1016/j.cub.2017.10.001</a>.
  short: Y. Matsubayashi, A. Louani, A. Dragu, B. Sanchez Sanchez, E. Serna Morales,
    L. Yolland, A. György, G. Vizcay, R. Fleck, J. Heddleston, T. Chew, D.E. Siekhaus,
    B. Stramer, Current Biology 27 (2017) 3526–3534e.4.
date_created: 2018-12-11T11:48:18Z
date_published: 2017-11-09T00:00:00Z
date_updated: 2023-09-27T12:25:31Z
day: '09'
ddc:
- '570'
- '576'
department:
- _id: DaSi
doi: 10.1016/j.cub.2017.10.001
external_id:
  isi:
  - '000415815800031'
file:
- access_level: open_access
  checksum: 264cf6c6c3551486ba5ea786850e000a
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:09:45Z
  date_updated: 2020-07-14T12:47:59Z
  file_id: '4770'
  file_name: IST-2017-875-v1+1_1-s2.0-S0960982217312691-main.pdf
  file_size: 4770657
  relation: main_file
file_date_updated: 2020-07-14T12:47:59Z
has_accepted_license: '1'
intvolume: '        27'
isi: 1
issue: '22'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 3526 - 3534e.4
publication: Current Biology
publication_identifier:
  issn:
  - '09609822'
publication_status: published
publisher: Cell Press
publist_id: '6905'
pubrep_id: '875'
quality_controlled: '1'
scopus_import: '1'
status: public
title: A moving source of matrix components is essential for De Novo basement membrane
  formation
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 27
year: '2017'
...
---
_id: '7733'
abstract:
- lang: eng
  text: "Sections\r\nPDFPDF\r\nTools\r\nShare\r\nAbstract\r\nBackground: Gene discovery
    has provided remarkable biological insights into amyotrophic lateral sclerosis
    (ALS). One challenge for clinical application of genetic testing is critical evaluation
    of the significance of reported variants.\r\nMethods: We use whole exome sequencing
    (WES) to develop a clinically relevant approach to identify a subset of ALS patients
    harboring likely pathogenic mutations. In parallel, we assess if DNA methylation
    can be used to screen for pathogenicity of novel variants since a methylation
    signature has been shown to associate with the pathogenic C9orf72 expansion, but
    has not been explored for other ALS mutations. Australian patients identified
    with ALS‐relevant variants were cross‐checked with population databases and case
    reports to critically assess whether they were “likely causal,” “uncertain significance,”
    or “unlikely causal.”\r\nResults: Published ALS variants were identified in >10%
    of patients; however, in only 3% of patients (4/120) could these be confidently
    considered pathogenic (in SOD1 and TARDBP). We found no evidence for a differential
    DNA methylation signature in these mutation carriers.\r\nConclusions: The use
    of WES in a typical ALS clinic demonstrates a critical approach to variant assessment
    with the capability to combine cohorts to enhance the largely unknown genetic
    basis of ALS."
article_processing_charge: No
article_type: original
author:
- first_name: Fleur C.
  full_name: Garton, Fleur C.
  last_name: Garton
- first_name: Beben
  full_name: Benyamin, Beben
  last_name: Benyamin
- first_name: Qiongyi
  full_name: Zhao, Qiongyi
  last_name: Zhao
- first_name: Zhijun
  full_name: Liu, Zhijun
  last_name: Liu
- first_name: Jacob
  full_name: Gratten, Jacob
  last_name: Gratten
- first_name: Anjali K.
  full_name: Henders, Anjali K.
  last_name: Henders
- first_name: Zong-Hong
  full_name: Zhang, Zong-Hong
  last_name: Zhang
- first_name: Janette
  full_name: Edson, Janette
  last_name: Edson
- first_name: Sarah
  full_name: Furlong, Sarah
  last_name: Furlong
- first_name: Sarah
  full_name: Morgan, Sarah
  last_name: Morgan
- first_name: Susan
  full_name: Heggie, Susan
  last_name: Heggie
- first_name: Kathryn
  full_name: Thorpe, Kathryn
  last_name: Thorpe
- first_name: Casey
  full_name: Pfluger, Casey
  last_name: Pfluger
- first_name: Karen A.
  full_name: Mather, Karen A.
  last_name: Mather
- first_name: Perminder S.
  full_name: Sachdev, Perminder S.
  last_name: Sachdev
- first_name: Allan F.
  full_name: McRae, Allan F.
  last_name: McRae
- first_name: Matthew Richard
  full_name: Robinson, Matthew Richard
  id: E5D42276-F5DA-11E9-8E24-6303E6697425
  last_name: Robinson
  orcid: 0000-0001-8982-8813
- first_name: Sonia
  full_name: Shah, Sonia
  last_name: Shah
- first_name: Peter M.
  full_name: Visscher, Peter M.
  last_name: Visscher
- first_name: Marie
  full_name: Mangelsdorf, Marie
  last_name: Mangelsdorf
- first_name: Robert D.
  full_name: Henderson, Robert D.
  last_name: Henderson
- first_name: Naomi R.
  full_name: Wray, Naomi R.
  last_name: Wray
- first_name: Pamela A.
  full_name: McCombe, Pamela A.
  last_name: McCombe
citation:
  ama: Garton FC, Benyamin B, Zhao Q, et al. Whole exome sequencing and DNA methylation
    analysis in a clinical amyotrophic lateral sclerosis cohort. <i>Molecular Genetics
    &#38; Genomic Medicine</i>. 2017;5(4):418-428. doi:<a href="https://doi.org/10.1002/mgg3.302">10.1002/mgg3.302</a>
  apa: Garton, F. C., Benyamin, B., Zhao, Q., Liu, Z., Gratten, J., Henders, A. K.,
    … McCombe, P. A. (2017). Whole exome sequencing and DNA methylation analysis in
    a clinical amyotrophic lateral sclerosis cohort. <i>Molecular Genetics &#38; Genomic
    Medicine</i>. Wiley. <a href="https://doi.org/10.1002/mgg3.302">https://doi.org/10.1002/mgg3.302</a>
  chicago: Garton, Fleur C., Beben Benyamin, Qiongyi Zhao, Zhijun Liu, Jacob Gratten,
    Anjali K. Henders, Zong-Hong Zhang, et al. “Whole Exome Sequencing and DNA Methylation
    Analysis in a Clinical Amyotrophic Lateral Sclerosis Cohort.” <i>Molecular Genetics
    &#38; Genomic Medicine</i>. Wiley, 2017. <a href="https://doi.org/10.1002/mgg3.302">https://doi.org/10.1002/mgg3.302</a>.
  ieee: F. C. Garton <i>et al.</i>, “Whole exome sequencing and DNA methylation analysis
    in a clinical amyotrophic lateral sclerosis cohort,” <i>Molecular Genetics &#38;
    Genomic Medicine</i>, vol. 5, no. 4. Wiley, pp. 418–428, 2017.
  ista: Garton FC, Benyamin B, Zhao Q, Liu Z, Gratten J, Henders AK, Zhang Z-H, Edson
    J, Furlong S, Morgan S, Heggie S, Thorpe K, Pfluger C, Mather KA, Sachdev PS,
    McRae AF, Robinson MR, Shah S, Visscher PM, Mangelsdorf M, Henderson RD, Wray
    NR, McCombe PA. 2017. Whole exome sequencing and DNA methylation analysis in a
    clinical amyotrophic lateral sclerosis cohort. Molecular Genetics &#38; Genomic
    Medicine. 5(4), 418–428.
  mla: Garton, Fleur C., et al. “Whole Exome Sequencing and DNA Methylation Analysis
    in a Clinical Amyotrophic Lateral Sclerosis Cohort.” <i>Molecular Genetics &#38;
    Genomic Medicine</i>, vol. 5, no. 4, Wiley, 2017, pp. 418–28, doi:<a href="https://doi.org/10.1002/mgg3.302">10.1002/mgg3.302</a>.
  short: F.C. Garton, B. Benyamin, Q. Zhao, Z. Liu, J. Gratten, A.K. Henders, Z.-H.
    Zhang, J. Edson, S. Furlong, S. Morgan, S. Heggie, K. Thorpe, C. Pfluger, K.A.
    Mather, P.S. Sachdev, A.F. McRae, M.R. Robinson, S. Shah, P.M. Visscher, M. Mangelsdorf,
    R.D. Henderson, N.R. Wray, P.A. McCombe, Molecular Genetics &#38; Genomic Medicine
    5 (2017) 418–428.
date_created: 2020-04-30T10:48:25Z
date_published: 2017-07-01T00:00:00Z
date_updated: 2021-01-12T08:15:10Z
day: '01'
doi: 10.1002/mgg3.302
extern: '1'
intvolume: '         5'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1002/mgg3.302
month: '07'
oa: 1
oa_version: Published Version
page: 418-428
publication: Molecular Genetics & Genomic Medicine
publication_identifier:
  issn:
  - 2324-9269
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Whole exome sequencing and DNA methylation analysis in a clinical amyotrophic
  lateral sclerosis cohort
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2017'
...
---
_id: '7755'
abstract:
- lang: eng
  text: We give a bird's-eye view of the plastic deformation of crystals aimed at
    the statistical physics community, as well as a broad introduction to the statistical
    theories of forced rigid systems aimed at the plasticity community. Memory effects
    in magnets, spin glasses, charge density waves, and dilute colloidal suspensions
    are discussed in relation to the onset of plastic yielding in crystals. Dislocation
    avalanches and complex dislocation tangles are discussed via a brief introduction
    to the renormalization group and scaling. Analogies to emergent scale invariance
    in fracture, jamming, coarsening, and a variety of depinning transitions are explored.
    Dislocation dynamics in crystals challenge nonequilibrium statistical physics.
    Statistical physics provides both cautionary tales of subtle memory effects in
    nonequilibrium systems and systematic tools designed to address complex scale-invariant
    behavior on multiple length scales and timescales.
article_processing_charge: No
article_type: original
author:
- first_name: James P.
  full_name: Sethna, James P.
  last_name: Sethna
- first_name: Matthew K.
  full_name: Bierbaum, Matthew K.
  last_name: Bierbaum
- first_name: Karin A.
  full_name: Dahmen, Karin A.
  last_name: Dahmen
- first_name: Carl Peter
  full_name: Goodrich, Carl Peter
  id: EB352CD2-F68A-11E9-89C5-A432E6697425
  last_name: Goodrich
  orcid: 0000-0002-1307-5074
- first_name: Julia R.
  full_name: Greer, Julia R.
  last_name: Greer
- first_name: Lorien X.
  full_name: Hayden, Lorien X.
  last_name: Hayden
- first_name: Jaron P.
  full_name: Kent-Dobias, Jaron P.
  last_name: Kent-Dobias
- first_name: Edward D.
  full_name: Lee, Edward D.
  last_name: Lee
- first_name: Danilo B.
  full_name: Liarte, Danilo B.
  last_name: Liarte
- first_name: Xiaoyue
  full_name: Ni, Xiaoyue
  last_name: Ni
- first_name: Katherine N.
  full_name: Quinn, Katherine N.
  last_name: Quinn
- first_name: Archishman
  full_name: Raju, Archishman
  last_name: Raju
- first_name: D. Zeb
  full_name: Rocklin, D. Zeb
  last_name: Rocklin
- first_name: Ashivni
  full_name: Shekhawat, Ashivni
  last_name: Shekhawat
- first_name: Stefano
  full_name: Zapperi, Stefano
  last_name: Zapperi
citation:
  ama: 'Sethna JP, Bierbaum MK, Dahmen KA, et al. Deformation of crystals: Connections
    with statistical physics. <i>Annual Review of Materials Research</i>. 2017;47:217-246.
    doi:<a href="https://doi.org/10.1146/annurev-matsci-070115-032036">10.1146/annurev-matsci-070115-032036</a>'
  apa: 'Sethna, J. P., Bierbaum, M. K., Dahmen, K. A., Goodrich, C. P., Greer, J.
    R., Hayden, L. X., … Zapperi, S. (2017). Deformation of crystals: Connections
    with statistical physics. <i>Annual Review of Materials Research</i>. Annual Reviews.
    <a href="https://doi.org/10.1146/annurev-matsci-070115-032036">https://doi.org/10.1146/annurev-matsci-070115-032036</a>'
  chicago: 'Sethna, James P., Matthew K. Bierbaum, Karin A. Dahmen, Carl Peter Goodrich,
    Julia R. Greer, Lorien X. Hayden, Jaron P. Kent-Dobias, et al. “Deformation of
    Crystals: Connections with Statistical Physics.” <i>Annual Review of Materials
    Research</i>. Annual Reviews, 2017. <a href="https://doi.org/10.1146/annurev-matsci-070115-032036">https://doi.org/10.1146/annurev-matsci-070115-032036</a>.'
  ieee: 'J. P. Sethna <i>et al.</i>, “Deformation of crystals: Connections with statistical
    physics,” <i>Annual Review of Materials Research</i>, vol. 47. Annual Reviews,
    pp. 217–246, 2017.'
  ista: 'Sethna JP, Bierbaum MK, Dahmen KA, Goodrich CP, Greer JR, Hayden LX, Kent-Dobias
    JP, Lee ED, Liarte DB, Ni X, Quinn KN, Raju A, Rocklin DZ, Shekhawat A, Zapperi
    S. 2017. Deformation of crystals: Connections with statistical physics. Annual
    Review of Materials Research. 47, 217–246.'
  mla: 'Sethna, James P., et al. “Deformation of Crystals: Connections with Statistical
    Physics.” <i>Annual Review of Materials Research</i>, vol. 47, Annual Reviews,
    2017, pp. 217–46, doi:<a href="https://doi.org/10.1146/annurev-matsci-070115-032036">10.1146/annurev-matsci-070115-032036</a>.'
  short: J.P. Sethna, M.K. Bierbaum, K.A. Dahmen, C.P. Goodrich, J.R. Greer, L.X.
    Hayden, J.P. Kent-Dobias, E.D. Lee, D.B. Liarte, X. Ni, K.N. Quinn, A. Raju, D.Z.
    Rocklin, A. Shekhawat, S. Zapperi, Annual Review of Materials Research 47 (2017)
    217–246.
date_created: 2020-04-30T11:38:24Z
date_published: 2017-07-01T00:00:00Z
date_updated: 2021-01-12T08:15:18Z
day: '01'
doi: 10.1146/annurev-matsci-070115-032036
extern: '1'
intvolume: '        47'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1146/annurev-matsci-070115-032036
month: '07'
oa: 1
oa_version: Published Version
page: 217-246
publication: Annual Review of Materials Research
publication_identifier:
  issn:
  - 1531-7331
  - 1545-4118
publication_status: published
publisher: Annual Reviews
quality_controlled: '1'
status: public
title: 'Deformation of crystals: Connections with statistical physics'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 47
year: '2017'
...
---
_id: '787'
abstract:
- lang: eng
  text: 'Population protocols are a popular model of distributed computing, in which
    randomly-interacting agents with little computational power cooperate to jointly
    perform computational tasks. Inspired by developments in molecular computation,
    and in particular DNA computing, recent algorithmic work has focused on the complexity
    of solving simple yet fundamental tasks in the population model, such as leader
    election (which requires convergence to a single agent in a special &quot;leader&quot;
    state), and majority (in which agents must converge to a decision as to which
    of two possible initial states had higher initial count). Known results point
    towards an inherent trade-off between the time complexity of such algorithms,
    and the space complexity, i.e. size of the memory available to each agent. In
    this paper, we explore this trade-off and provide new upper and lower bounds for
    majority and leader election. First, we prove a unified lower bound, which relates
    the space available per node with the time complexity achievable by a protocol:
    for instance, our result implies that any protocol solving either of these tasks
    for n agents using O(log log n) states must take (n=polylogn) expected time. This
    is the first result to characterize time complexity for protocols which employ
    super-constant number of states per node, and proves that fast, poly-logarithmic
    running times require protocols to have relatively large space costs. On the positive
    side, we give algorithms showing that fast, poly-logarithmic convergence time
    can be achieved using O(log2 n) space per node, in the case of both tasks. Overall,
    our results highlight a time complexity separation between O(log log n) and (log2
    n) state space size for both majority and leader election in population protocols,
    and introduce new techniques, which should be applicable more broadly.'
acknowledgement: "Dan  Alistarh  was  supported  by  a  Swiss  National  Science\r\nFoundation
  Ambizione Fellowship.  James Aspnes was supported  by  the  National  Science  Foundation
  \ under  grants\r\nCCF-1637385 and CCF-1650596.  Rati Gelashvili was supported  by
  \ the  National  Science  Foundation  under  grants\r\nCCF-1217921, CCF-1301926,
  and IIS-1447786, the Department of Energy under grant ER26116/DE-SC0008923, and\r\nOracle
  and Intel corporations.\r\nThe  authors  would  like  to  thank  David  Doty,  David\r\nSoloveichik,
  \ and Milan Vojnovic for insightful discussions\r\nand feedback during the development
  of this work."
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: James
  full_name: Aspnes, James
  last_name: Aspnes
- first_name: David
  full_name: Eisenstat, David
  last_name: Eisenstat
- first_name: Ronald
  full_name: Rivest, Ronald
  last_name: Rivest
- first_name: Rati
  full_name: Gelashvili, Rati
  last_name: Gelashvili
citation:
  ama: 'Alistarh D-A, Aspnes J, Eisenstat D, Rivest R, Gelashvili R. Time-space trade-offs
    in population protocols. In: SIAM; 2017:2560-2579. doi:<a href="https://doi.org/doi.org/10.1137/1.9781611974782.169">doi.org/10.1137/1.9781611974782.169</a>'
  apa: 'Alistarh, D.-A., Aspnes, J., Eisenstat, D., Rivest, R., &#38; Gelashvili,
    R. (2017). Time-space trade-offs in population protocols (pp. 2560–2579). Presented
    at the SODA: Symposium on Discrete Algorithms, SIAM. <a href="https://doi.org/doi.org/10.1137/1.9781611974782.169">https://doi.org/doi.org/10.1137/1.9781611974782.169</a>'
  chicago: Alistarh, Dan-Adrian, James Aspnes, David Eisenstat, Ronald Rivest, and
    Rati Gelashvili. “Time-Space Trade-Offs in Population Protocols,” 2560–79. SIAM,
    2017. <a href="https://doi.org/doi.org/10.1137/1.9781611974782.169">https://doi.org/doi.org/10.1137/1.9781611974782.169</a>.
  ieee: 'D.-A. Alistarh, J. Aspnes, D. Eisenstat, R. Rivest, and R. Gelashvili, “Time-space
    trade-offs in population protocols,” presented at the SODA: Symposium on Discrete
    Algorithms, 2017, pp. 2560–2579.'
  ista: 'Alistarh D-A, Aspnes J, Eisenstat D, Rivest R, Gelashvili R. 2017. Time-space
    trade-offs in population protocols. SODA: Symposium on Discrete Algorithms, 2560–2579.'
  mla: Alistarh, Dan-Adrian, et al. <i>Time-Space Trade-Offs in Population Protocols</i>.
    SIAM, 2017, pp. 2560–79, doi:<a href="https://doi.org/doi.org/10.1137/1.9781611974782.169">doi.org/10.1137/1.9781611974782.169</a>.
  short: D.-A. Alistarh, J. Aspnes, D. Eisenstat, R. Rivest, R. Gelashvili, in:, SIAM,
    2017, pp. 2560–2579.
conference:
  name: 'SODA: Symposium on Discrete Algorithms'
date_created: 2018-12-11T11:48:30Z
date_published: 2017-01-01T00:00:00Z
date_updated: 2023-02-23T13:19:13Z
day: '01'
doi: doi.org/10.1137/1.9781611974782.169
extern: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1602.08032
month: '01'
oa: 1
oa_version: None
page: 2560 - 2579
publication_status: published
publisher: SIAM
publist_id: '6869'
status: public
title: Time-space trade-offs in population protocols
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2017'
...
---
_id: '788'
abstract:
- lang: eng
  text: In contrast to electronic computation, chemical computation is noisy and susceptible
    to a variety of sources of error, which has prevented the construction of robust
    complex systems. To be effective, chemical algorithms must be designed with an
    appropriate error model in mind. Here we consider the model of chemical reaction
    networks that preserve molecular count (population protocols), and ask whether
    computation can be made robust to a natural model of unintended “leak” reactions.
    Our definition of leak is motivated by both the particular spurious behavior seen
    when implementing chemical reaction networks with DNA strand displacement cascades,
    as well as the unavoidable side reactions in any implementation due to the basic
    laws of chemistry. We develop a new “Robust Detection” algorithm for the problem
    of fast (logarithmic time) single molecule detection, and prove that it is robust
    to this general model of leaks. Besides potential applications in single molecule
    detection, the error-correction ideas developed here might enable a new class
    of robust-by-design chemical algorithms. Our analysis is based on a non-standard
    hybrid argument, combining ideas from discrete analysis of population protocols
    with classic Markov chain techniques.
acknowledgement: "D. Alistarh - Supported by an SNF Ambizione Fellowship. A. Kosowski
  — Supported by Inria project GANG, ANR project DESCARTES, and\r\nNCN grant 2015/17/B/ST6/01897.
  D. Soloveichik — Supported by NSF grants CCF-1618895 and CCF-1652824.\r\n\r\n"
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Bartłomiej
  full_name: Dudek, Bartłomiej
  last_name: Dudek
- first_name: Adrian
  full_name: Kosowski, Adrian
  last_name: Kosowski
- first_name: David
  full_name: Soloveichik, David
  last_name: Soloveichik
- first_name: Przemysław
  full_name: Uznański, Przemysław
  last_name: Uznański
citation:
  ama: 'Alistarh D-A, Dudek B, Kosowski A, Soloveichik D, Uznański P. Robust detection
    in leak-prone population protocols. In: Vol 10467 LNCS. Springer; 2017:155-171.
    doi:<a href="https://doi.org/10.1007/978-3-319-66799-7_11">10.1007/978-3-319-66799-7_11</a>'
  apa: Alistarh, D.-A., Dudek, B., Kosowski, A., Soloveichik, D., &#38; Uznański,
    P. (2017). Robust detection in leak-prone population protocols (Vol. 10467 LNCS,
    pp. 155–171). Presented at the DNA Computing and Molecular Programming, Springer.
    <a href="https://doi.org/10.1007/978-3-319-66799-7_11">https://doi.org/10.1007/978-3-319-66799-7_11</a>
  chicago: Alistarh, Dan-Adrian, Bartłomiej Dudek, Adrian Kosowski, David Soloveichik,
    and Przemysław Uznański. “Robust Detection in Leak-Prone Population Protocols,”
    10467 LNCS:155–71. Springer, 2017. <a href="https://doi.org/10.1007/978-3-319-66799-7_11">https://doi.org/10.1007/978-3-319-66799-7_11</a>.
  ieee: D.-A. Alistarh, B. Dudek, A. Kosowski, D. Soloveichik, and P. Uznański, “Robust
    detection in leak-prone population protocols,” presented at the DNA Computing
    and Molecular Programming, 2017, vol. 10467 LNCS, pp. 155–171.
  ista: Alistarh D-A, Dudek B, Kosowski A, Soloveichik D, Uznański P. 2017. Robust
    detection in leak-prone population protocols. DNA Computing and Molecular Programming,
    LNCS, vol. 10467 LNCS, 155–171.
  mla: Alistarh, Dan-Adrian, et al. <i>Robust Detection in Leak-Prone Population Protocols</i>.
    Vol. 10467 LNCS, Springer, 2017, pp. 155–71, doi:<a href="https://doi.org/10.1007/978-3-319-66799-7_11">10.1007/978-3-319-66799-7_11</a>.
  short: D.-A. Alistarh, B. Dudek, A. Kosowski, D. Soloveichik, P. Uznański, in:,
    Springer, 2017, pp. 155–171.
conference:
  name: DNA Computing and Molecular Programming
date_created: 2018-12-11T11:48:30Z
date_published: 2017-01-01T00:00:00Z
date_updated: 2022-03-18T12:48:02Z
day: '01'
doi: 10.1007/978-3-319-66799-7_11
extern: '1'
external_id:
  arxiv:
  - '1706.09937'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1706.09937
month: '01'
oa: 1
oa_version: None
page: 155 - 171
publication_status: published
publisher: Springer
publist_id: '6868'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Robust detection in leak-prone population protocols
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10467 LNCS
year: '2017'
...
---
_id: '791'
abstract:
- lang: eng
  text: 'Consider the following random process: we are given n queues, into which
    elements of increasing labels are inserted uniformly at random. To remove an element,
    we pick two queues at random, and remove the element of lower label (higher priority)
    among the two. The cost of a removal is the rank of the label removed, among labels
    still present in any of the queues, that is, the distance from the optimal choice
    at each step. Variants of this strategy are prevalent in state-of-the-art concurrent
    priority queue implementations. Nonetheless, it is not known whether such implementations
    provide any rank guarantees, even in a sequential model. We answer this question,
    showing that this strategy provides surprisingly strong guarantees: Although the
    single-choice process, where we always insert and remove from a single randomly
    chosen queue, has degrading cost, going to infinity as we increase the number
    of steps, in the two choice process, the expected rank of a removed element is
    O(n) while the expected worst-case cost is O(n log n). These bounds are tight,
    and hold irrespective of the number of steps for which we run the process. The
    argument is based on a new technical connection between &quot;heavily loaded&quot;
    balls-into-bins processes and priority scheduling. Our analytic results inspire
    a new concurrent priority queue implementation, which improves upon the state
    of the art in terms of practical performance.'
article_processing_charge: No
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Justin
  full_name: Kopinsky, Justin
  last_name: Kopinsky
- first_name: Jerry
  full_name: Li, Jerry
  last_name: Li
- first_name: Giorgi
  full_name: Nadiradze, Giorgi
  id: 3279A00C-F248-11E8-B48F-1D18A9856A87
  last_name: Nadiradze
  orcid: 0000-0001-5634-0731
citation:
  ama: 'Alistarh D-A, Kopinsky J, Li J, Nadiradze G. The power of choice in priority
    scheduling. In: <i>Proceedings of the ACM Symposium on Principles of Distributed
    Computing</i>. Vol Part F129314. ACM; 2017:283-292. doi:<a href="https://doi.org/10.1145/3087801.3087810">10.1145/3087801.3087810</a>'
  apa: 'Alistarh, D.-A., Kopinsky, J., Li, J., &#38; Nadiradze, G. (2017). The power
    of choice in priority scheduling. In <i>Proceedings of the ACM Symposium on Principles
    of Distributed Computing</i> (Vol. Part F129314, pp. 283–292). Washington, WA,
    USA: ACM. <a href="https://doi.org/10.1145/3087801.3087810">https://doi.org/10.1145/3087801.3087810</a>'
  chicago: Alistarh, Dan-Adrian, Justin Kopinsky, Jerry Li, and Giorgi Nadiradze.
    “The Power of Choice in Priority Scheduling.” In <i>Proceedings of the ACM Symposium
    on Principles of Distributed Computing</i>, Part F129314:283–92. ACM, 2017. <a
    href="https://doi.org/10.1145/3087801.3087810">https://doi.org/10.1145/3087801.3087810</a>.
  ieee: D.-A. Alistarh, J. Kopinsky, J. Li, and G. Nadiradze, “The power of choice
    in priority scheduling,” in <i>Proceedings of the ACM Symposium on Principles
    of Distributed Computing</i>, Washington, WA, USA, 2017, vol. Part F129314, pp.
    283–292.
  ista: 'Alistarh D-A, Kopinsky J, Li J, Nadiradze G. 2017. The power of choice in
    priority scheduling. Proceedings of the ACM Symposium on Principles of Distributed
    Computing. PODC: Principles of Distributed Computing vol. Part F129314, 283–292.'
  mla: Alistarh, Dan-Adrian, et al. “The Power of Choice in Priority Scheduling.”
    <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>,
    vol. Part F129314, ACM, 2017, pp. 283–92, doi:<a href="https://doi.org/10.1145/3087801.3087810">10.1145/3087801.3087810</a>.
  short: D.-A. Alistarh, J. Kopinsky, J. Li, G. Nadiradze, in:, Proceedings of the
    ACM Symposium on Principles of Distributed Computing, ACM, 2017, pp. 283–292.
conference:
  end_date: 2017-07-27
  location: Washington, WA, USA
  name: 'PODC: Principles of Distributed Computing'
  start_date: 2017-07-25
date_created: 2018-12-11T11:48:31Z
date_published: 2017-07-26T00:00:00Z
date_updated: 2023-09-27T12:17:59Z
day: '26'
department:
- _id: DaAl
doi: 10.1145/3087801.3087810
external_id:
  isi:
  - '000462995000035'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1706.04178
month: '07'
oa: 1
oa_version: Submitted Version
page: 283 - 292
publication: Proceedings of the ACM Symposium on Principles of Distributed Computing
publication_identifier:
  isbn:
  - 978-145034992-5
publication_status: published
publisher: ACM
publist_id: '6864'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The power of choice in priority scheduling
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: Part F129314
year: '2017'
...
---
_id: '792'
abstract:
- lang: eng
  text: The chaotic dynamics of low-dimensional systems, such as Lorenz or Rössler
    flows, is guided by the infinity of periodic orbits embedded in their strange
    attractors. Whether this is also the case for the infinite-dimensional dynamics
    of Navier–Stokes equations has long been speculated, and is a topic of ongoing
    study. Periodic and relative periodic solutions have been shown to be involved
    in transitions to turbulence. Their relevance to turbulent dynamics – specifically,
    whether periodic orbits play the same role in high-dimensional nonlinear systems
    like the Navier–Stokes equations as they do in lower-dimensional systems – is
    the focus of the present investigation. We perform here a detailed study of pipe
    flow relative periodic orbits with energies and mean dissipations close to turbulent
    values. We outline several approaches to reduction of the translational symmetry
    of the system. We study pipe flow in a minimal computational cell at   Re=2500,
    and report a library of invariant solutions found with the aid of the method of
    slices. Detailed study of the unstable manifolds of a sample of these solutions
    is consistent with the picture that relative periodic orbits are embedded in the
    chaotic saddle and that they guide the turbulent dynamics.
article_processing_charge: No
author:
- first_name: Nazmi B
  full_name: Budanur, Nazmi B
  id: 3EA1010E-F248-11E8-B48F-1D18A9856A87
  last_name: Budanur
  orcid: 0000-0003-0423-5010
- first_name: Kimberly
  full_name: Short, Kimberly
  last_name: Short
- first_name: Mohammad
  full_name: Farazmand, Mohammad
  last_name: Farazmand
- first_name: Ashley
  full_name: Willis, Ashley
  last_name: Willis
- first_name: Predrag
  full_name: Cvitanović, Predrag
  last_name: Cvitanović
citation:
  ama: Budanur NB, Short K, Farazmand M, Willis A, Cvitanović P. Relative periodic
    orbits form the backbone of turbulent pipe flow. <i>Journal of Fluid Mechanics</i>.
    2017;833:274-301. doi:<a href="https://doi.org/10.1017/jfm.2017.699">10.1017/jfm.2017.699</a>
  apa: Budanur, N. B., Short, K., Farazmand, M., Willis, A., &#38; Cvitanović, P.
    (2017). Relative periodic orbits form the backbone of turbulent pipe flow. <i>Journal
    of Fluid Mechanics</i>. Cambridge University Press. <a href="https://doi.org/10.1017/jfm.2017.699">https://doi.org/10.1017/jfm.2017.699</a>
  chicago: Budanur, Nazmi B, Kimberly Short, Mohammad Farazmand, Ashley Willis, and
    Predrag Cvitanović. “Relative Periodic Orbits Form the Backbone of Turbulent Pipe
    Flow.” <i>Journal of Fluid Mechanics</i>. Cambridge University Press, 2017. <a
    href="https://doi.org/10.1017/jfm.2017.699">https://doi.org/10.1017/jfm.2017.699</a>.
  ieee: N. B. Budanur, K. Short, M. Farazmand, A. Willis, and P. Cvitanović, “Relative
    periodic orbits form the backbone of turbulent pipe flow,” <i>Journal of Fluid
    Mechanics</i>, vol. 833. Cambridge University Press, pp. 274–301, 2017.
  ista: Budanur NB, Short K, Farazmand M, Willis A, Cvitanović P. 2017. Relative periodic
    orbits form the backbone of turbulent pipe flow. Journal of Fluid Mechanics. 833,
    274–301.
  mla: Budanur, Nazmi B., et al. “Relative Periodic Orbits Form the Backbone of Turbulent
    Pipe Flow.” <i>Journal of Fluid Mechanics</i>, vol. 833, Cambridge University
    Press, 2017, pp. 274–301, doi:<a href="https://doi.org/10.1017/jfm.2017.699">10.1017/jfm.2017.699</a>.
  short: N.B. Budanur, K. Short, M. Farazmand, A. Willis, P. Cvitanović, Journal of
    Fluid Mechanics 833 (2017) 274–301.
date_created: 2018-12-11T11:48:32Z
date_published: 2017-12-25T00:00:00Z
date_updated: 2023-09-27T12:17:35Z
day: '25'
department:
- _id: BjHo
doi: 10.1017/jfm.2017.699
external_id:
  isi:
  - '000414641700001'
intvolume: '       833'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1705.03720
month: '12'
oa: 1
oa_version: Submitted Version
page: 274 - 301
project:
- _id: 25636330-B435-11E9-9278-68D0E5697425
  grant_number: 11-NSF-1070
  name: ROOTS Genome-wide Analysis of Root Traits
publication: Journal of Fluid Mechanics
publication_identifier:
  issn:
  - '00221120'
publication_status: published
publisher: Cambridge University Press
publist_id: '6862'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Relative periodic orbits form the backbone of turbulent pipe flow
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 833
year: '2017'
...
---
_id: '793'
abstract:
- lang: eng
  text: 'Let P be a finite point set in the plane. A cordinary triangle in P is a
    subset of P consisting of three non-collinear points such that each of the three
    lines determined by the three points contains at most c points of P . Motivated
    by a question of Erdös, and answering a question of de Zeeuw, we prove that there
    exists a constant c &gt; 0such that P contains a c-ordinary triangle, provided
    that P is not contained in the union of two lines. Furthermore, the number of
    c-ordinary triangles in P is Ω(| P |). '
article_processing_charge: No
author:
- first_name: Radoslav
  full_name: Fulek, Radoslav
  id: 39F3FFE4-F248-11E8-B48F-1D18A9856A87
  last_name: Fulek
  orcid: 0000-0001-8485-1774
- first_name: Hossein
  full_name: Mojarrad, Hossein
  last_name: Mojarrad
- first_name: Márton
  full_name: Naszódi, Márton
  last_name: Naszódi
- first_name: József
  full_name: Solymosi, József
  last_name: Solymosi
- first_name: Sebastian
  full_name: Stich, Sebastian
  last_name: Stich
- first_name: May
  full_name: Szedlák, May
  last_name: Szedlák
citation:
  ama: 'Fulek R, Mojarrad H, Naszódi M, Solymosi J, Stich S, Szedlák M. On the existence
    of ordinary triangles. <i>Computational Geometry: Theory and Applications</i>.
    2017;66:28-31. doi:<a href="https://doi.org/10.1016/j.comgeo.2017.07.002">10.1016/j.comgeo.2017.07.002</a>'
  apa: 'Fulek, R., Mojarrad, H., Naszódi, M., Solymosi, J., Stich, S., &#38; Szedlák,
    M. (2017). On the existence of ordinary triangles. <i>Computational Geometry:
    Theory and Applications</i>. Elsevier. <a href="https://doi.org/10.1016/j.comgeo.2017.07.002">https://doi.org/10.1016/j.comgeo.2017.07.002</a>'
  chicago: 'Fulek, Radoslav, Hossein Mojarrad, Márton Naszódi, József Solymosi, Sebastian
    Stich, and May Szedlák. “On the Existence of Ordinary Triangles.” <i>Computational
    Geometry: Theory and Applications</i>. Elsevier, 2017. <a href="https://doi.org/10.1016/j.comgeo.2017.07.002">https://doi.org/10.1016/j.comgeo.2017.07.002</a>.'
  ieee: 'R. Fulek, H. Mojarrad, M. Naszódi, J. Solymosi, S. Stich, and M. Szedlák,
    “On the existence of ordinary triangles,” <i>Computational Geometry: Theory and
    Applications</i>, vol. 66. Elsevier, pp. 28–31, 2017.'
  ista: 'Fulek R, Mojarrad H, Naszódi M, Solymosi J, Stich S, Szedlák M. 2017. On
    the existence of ordinary triangles. Computational Geometry: Theory and Applications.
    66, 28–31.'
  mla: 'Fulek, Radoslav, et al. “On the Existence of Ordinary Triangles.” <i>Computational
    Geometry: Theory and Applications</i>, vol. 66, Elsevier, 2017, pp. 28–31, doi:<a
    href="https://doi.org/10.1016/j.comgeo.2017.07.002">10.1016/j.comgeo.2017.07.002</a>.'
  short: 'R. Fulek, H. Mojarrad, M. Naszódi, J. Solymosi, S. Stich, M. Szedlák, Computational
    Geometry: Theory and Applications 66 (2017) 28–31.'
date_created: 2018-12-11T11:48:32Z
date_published: 2017-01-01T00:00:00Z
date_updated: 2023-09-27T12:15:16Z
day: '01'
department:
- _id: UlWa
doi: 10.1016/j.comgeo.2017.07.002
ec_funded: 1
external_id:
  isi:
  - '000412039700003'
intvolume: '        66'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1701.08183
month: '01'
oa: 1
oa_version: Submitted Version
page: 28 - 31
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: 'Computational Geometry: Theory and Applications'
publication_identifier:
  issn:
  - '09257721'
publication_status: published
publisher: Elsevier
publist_id: '6861'
quality_controlled: '1'
status: public
title: On the existence of ordinary triangles
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 66
year: '2017'
...
---
_id: '794'
abstract:
- lang: eng
  text: We show that c-planarity is solvable in quadratic time for flat clustered
    graphs with three clusters if the combinatorial embedding of the underlying graph
    is fixed. In simpler graph-theoretical terms our result can be viewed as follows.
    Given a graph G with the vertex set partitioned into three parts embedded on a
    2-sphere, our algorithm decides if we can augment G by adding edges without creating
    an edge-crossing so that in the resulting spherical graph the vertices of each
    part induce a connected sub-graph. We proceed by a reduction to the problem of
    testing the existence of a perfect matching in planar bipartite graphs. We formulate
    our result in a slightly more general setting of cyclic clustered graphs, i.e.,
    the simple graph obtained by contracting each cluster, where we disregard loops
    and multi-edges, is a cycle.
acknowledgement: I would like to thank Jan Kynčl, Dömötör Pálvölgyi and anonymous
  referees for many comments and suggestions that helped to improve the presentation
  of the result.
article_processing_charge: No
author:
- first_name: Radoslav
  full_name: Fulek, Radoslav
  id: 39F3FFE4-F248-11E8-B48F-1D18A9856A87
  last_name: Fulek
  orcid: 0000-0001-8485-1774
citation:
  ama: 'Fulek R. C-planarity of embedded cyclic c-graphs. <i>Computational Geometry:
    Theory and Applications</i>. 2017;66:1-13. doi:<a href="https://doi.org/10.1016/j.comgeo.2017.06.016">10.1016/j.comgeo.2017.06.016</a>'
  apa: 'Fulek, R. (2017). C-planarity of embedded cyclic c-graphs. <i>Computational
    Geometry: Theory and Applications</i>. Elsevier. <a href="https://doi.org/10.1016/j.comgeo.2017.06.016">https://doi.org/10.1016/j.comgeo.2017.06.016</a>'
  chicago: 'Fulek, Radoslav. “C-Planarity of Embedded Cyclic c-Graphs.” <i>Computational
    Geometry: Theory and Applications</i>. Elsevier, 2017. <a href="https://doi.org/10.1016/j.comgeo.2017.06.016">https://doi.org/10.1016/j.comgeo.2017.06.016</a>.'
  ieee: 'R. Fulek, “C-planarity of embedded cyclic c-graphs,” <i>Computational Geometry:
    Theory and Applications</i>, vol. 66. Elsevier, pp. 1–13, 2017.'
  ista: 'Fulek R. 2017. C-planarity of embedded cyclic c-graphs. Computational Geometry:
    Theory and Applications. 66, 1–13.'
  mla: 'Fulek, Radoslav. “C-Planarity of Embedded Cyclic c-Graphs.” <i>Computational
    Geometry: Theory and Applications</i>, vol. 66, Elsevier, 2017, pp. 1–13, doi:<a
    href="https://doi.org/10.1016/j.comgeo.2017.06.016">10.1016/j.comgeo.2017.06.016</a>.'
  short: 'R. Fulek, Computational Geometry: Theory and Applications 66 (2017) 1–13.'
date_created: 2018-12-11T11:48:32Z
date_published: 2017-12-01T00:00:00Z
date_updated: 2023-09-27T12:14:49Z
day: '01'
department:
- _id: UlWa
doi: 10.1016/j.comgeo.2017.06.016
external_id:
  isi:
  - '000412039700001'
intvolume: '        66'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1602.01346
month: '12'
oa: 1
oa_version: Preprint
page: 1 - 13
publication: 'Computational Geometry: Theory and Applications'
publication_status: published
publisher: Elsevier
publist_id: '6860'
quality_controlled: '1'
related_material:
  record:
  - id: '1165'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: C-planarity of embedded cyclic c-graphs
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 66
year: '2017'
...
---
_id: '795'
abstract:
- lang: eng
  text: 'We introduce a common generalization of the strong Hanani–Tutte theorem and
    the weak Hanani–Tutte theorem: if a graph G has a drawing D in the plane where
    every pair of independent edges crosses an even number of times, then G has a
    planar drawing preserving the rotation of each vertex whose incident edges cross
    each other evenly in D. The theorem is implicit in the proof of the strong Hanani–Tutte
    theorem by Pelsmajer, Schaefer and Štefankovič. We give a new, somewhat simpler
    proof.'
article_number: P3.18
article_processing_charge: No
article_type: original
author:
- first_name: Radoslav
  full_name: Fulek, Radoslav
  id: 39F3FFE4-F248-11E8-B48F-1D18A9856A87
  last_name: Fulek
  orcid: 0000-0001-8485-1774
- first_name: Jan
  full_name: Kynčl, Jan
  last_name: Kynčl
- first_name: Dömötör
  full_name: Pálvölgyi, Dömötör
  last_name: Pálvölgyi
citation:
  ama: Fulek R, Kynčl J, Pálvölgyi D. Unified Hanani Tutte theorem. <i>Electronic
    Journal of Combinatorics</i>. 2017;24(3). doi:<a href="https://doi.org/10.37236/6663">10.37236/6663</a>
  apa: Fulek, R., Kynčl, J., &#38; Pálvölgyi, D. (2017). Unified Hanani Tutte theorem.
    <i>Electronic Journal of Combinatorics</i>. International Press. <a href="https://doi.org/10.37236/6663">https://doi.org/10.37236/6663</a>
  chicago: Fulek, Radoslav, Jan Kynčl, and Dömötör Pálvölgyi. “Unified Hanani Tutte
    Theorem.” <i>Electronic Journal of Combinatorics</i>. International Press, 2017.
    <a href="https://doi.org/10.37236/6663">https://doi.org/10.37236/6663</a>.
  ieee: R. Fulek, J. Kynčl, and D. Pálvölgyi, “Unified Hanani Tutte theorem,” <i>Electronic
    Journal of Combinatorics</i>, vol. 24, no. 3. International Press, 2017.
  ista: Fulek R, Kynčl J, Pálvölgyi D. 2017. Unified Hanani Tutte theorem. Electronic
    Journal of Combinatorics. 24(3), P3.18.
  mla: Fulek, Radoslav, et al. “Unified Hanani Tutte Theorem.” <i>Electronic Journal
    of Combinatorics</i>, vol. 24, no. 3, P3.18, International Press, 2017, doi:<a
    href="https://doi.org/10.37236/6663">10.37236/6663</a>.
  short: R. Fulek, J. Kynčl, D. Pálvölgyi, Electronic Journal of Combinatorics 24
    (2017).
date_created: 2018-12-11T11:48:32Z
date_published: 2017-07-28T00:00:00Z
date_updated: 2022-03-18T12:58:53Z
day: '28'
ddc:
- '000'
department:
- _id: UlWa
doi: 10.37236/6663
ec_funded: 1
file:
- access_level: open_access
  checksum: ef320cff0f062051e858f929be6a3581
  content_type: application/pdf
  creator: dernst
  date_created: 2019-01-18T14:04:08Z
  date_updated: 2020-07-14T12:48:06Z
  file_id: '5853'
  file_name: 2017_ElectrCombi_Fulek.pdf
  file_size: 236944
  relation: main_file
file_date_updated: 2020-07-14T12:48:06Z
has_accepted_license: '1'
intvolume: '        24'
issue: '3'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Electronic Journal of Combinatorics
publication_identifier:
  issn:
  - '10778926'
publication_status: published
publisher: International Press
publist_id: '6859'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Unified Hanani Tutte theorem
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2017'
...
---
_id: '796'
abstract:
- lang: eng
  text: We present the fabrication and characterization of an aluminum transmon qubit
    on a silicon-on-insulator substrate. Key to the qubit fabrication is the use of
    an anhydrous hydrofluoric vapor process which selectively removes the lossy silicon
    oxide buried underneath the silicon device layer. For a 5.6 GHz qubit measured
    dispersively by a 7.1 GHz resonator, we find T1 = 3.5 μs and T∗2 = 2.2 μs. This
    process in principle permits the co-fabrication of silicon photonic and mechanical
    elements, providing a route towards chip-scale integration of electro-opto-mechanical
    transducers for quantum networking of superconducting microwave quantum circuits.
    The additional processing steps are compatible with established fabrication techniques
    for aluminum transmon qubits on silicon.
acknowledgement: This work was supported by the AFOSR MURI Quantum Photonic Matter
  (Grant No. 16RT0696), the AFOSR MURI Wiring Quantum Networks with Mechanical Transducers
  (Grant No. FA9550-15-1-0015), the Institute for Quantum Information and Matter,
  an NSF Physics Frontiers Center (Grant No. PHY-1125565) with the support of the
  Gordon and Betty Moore Foundation, and the Kavli Nanoscience Institute at Caltech.
  A.J.K. acknowledges the IQIM Postdoctoral Fellowship.
article_number: '042603'
article_processing_charge: No
author:
- first_name: Andrew J
  full_name: Keller, Andrew J
  last_name: Keller
- first_name: Paul
  full_name: Dieterle, Paul
  last_name: Dieterle
- first_name: Michael
  full_name: Fang, Michael
  last_name: Fang
- first_name: Brett
  full_name: Berger, Brett
  last_name: Berger
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
- first_name: Oskar
  full_name: Painter, Oskar
  last_name: Painter
citation:
  ama: Keller AJ, Dieterle P, Fang M, Berger B, Fink JM, Painter O. Al transmon qubits
    on silicon on insulator for quantum device integration. <i>Applied Physics Letters</i>.
    2017;111(4). doi:<a href="https://doi.org/10.1063/1.4994661">10.1063/1.4994661</a>
  apa: Keller, A. J., Dieterle, P., Fang, M., Berger, B., Fink, J. M., &#38; Painter,
    O. (2017). Al transmon qubits on silicon on insulator for quantum device integration.
    <i>Applied Physics Letters</i>. American Institute of Physics. <a href="https://doi.org/10.1063/1.4994661">https://doi.org/10.1063/1.4994661</a>
  chicago: Keller, Andrew J, Paul Dieterle, Michael Fang, Brett Berger, Johannes M
    Fink, and Oskar Painter. “Al Transmon Qubits on Silicon on Insulator for Quantum
    Device Integration.” <i>Applied Physics Letters</i>. American Institute of Physics,
    2017. <a href="https://doi.org/10.1063/1.4994661">https://doi.org/10.1063/1.4994661</a>.
  ieee: A. J. Keller, P. Dieterle, M. Fang, B. Berger, J. M. Fink, and O. Painter,
    “Al transmon qubits on silicon on insulator for quantum device integration,” <i>Applied
    Physics Letters</i>, vol. 111, no. 4. American Institute of Physics, 2017.
  ista: Keller AJ, Dieterle P, Fang M, Berger B, Fink JM, Painter O. 2017. Al transmon
    qubits on silicon on insulator for quantum device integration. Applied Physics
    Letters. 111(4), 042603.
  mla: Keller, Andrew J., et al. “Al Transmon Qubits on Silicon on Insulator for Quantum
    Device Integration.” <i>Applied Physics Letters</i>, vol. 111, no. 4, 042603,
    American Institute of Physics, 2017, doi:<a href="https://doi.org/10.1063/1.4994661">10.1063/1.4994661</a>.
  short: A.J. Keller, P. Dieterle, M. Fang, B. Berger, J.M. Fink, O. Painter, Applied
    Physics Letters 111 (2017).
date_created: 2018-12-11T11:48:33Z
date_published: 2017-07-01T00:00:00Z
date_updated: 2023-09-27T12:13:36Z
day: '01'
department:
- _id: JoFi
doi: 10.1063/1.4994661
external_id:
  isi:
  - '000406779700031'
intvolume: '       111'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1703.10195
month: '07'
oa: 1
oa_version: Submitted Version
publication: Applied Physics Letters
publication_identifier:
  issn:
  - '00036951'
publication_status: published
publisher: American Institute of Physics
publist_id: '6857'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Al transmon qubits on silicon on insulator for quantum device integration
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 111
year: '2017'
...
---
_id: '798'
abstract:
- lang: eng
  text: Nonreciprocal circuit elements form an integral part of modern measurement
    and communication systems. Mathematically they require breaking of time-reversal
    symmetry, typically achieved using magnetic materials and more recently using
    the quantum Hall effect, parametric permittivity modulation or Josephson nonlinearities.
    Here we demonstrate an on-chip magnetic-free circulator based on reservoir-engineered
    electromechanic interactions. Directional circulation is achieved with controlled
    phase-sensitive interference of six distinct electro-mechanical signal conversion
    paths. The presented circulator is compact, its silicon-on-insulator platform
    is compatible with both superconducting qubits and silicon photonics, and its
    noise performance is close to the quantum limit. With a high dynamic range, a
    tunable bandwidth of up to 30 MHz and an in situ reconfigurability as beam splitter
    or wavelength converter, it could pave the way for superconducting qubit processors
    with multiplexed on-chip signal processing and readout.
article_number: '1304'
article_processing_charge: Yes (in subscription journal)
author:
- first_name: Shabir
  full_name: Barzanjeh, Shabir
  id: 2D25E1F6-F248-11E8-B48F-1D18A9856A87
  last_name: Barzanjeh
  orcid: 0000-0003-0415-1423
- first_name: Matthias
  full_name: Wulf, Matthias
  id: 45598606-F248-11E8-B48F-1D18A9856A87
  last_name: Wulf
  orcid: 0000-0001-6613-1378
- first_name: Matilda
  full_name: Peruzzo, Matilda
  id: 3F920B30-F248-11E8-B48F-1D18A9856A87
  last_name: Peruzzo
  orcid: 0000-0002-3415-4628
- first_name: Mahmoud
  full_name: Kalaee, Mahmoud
  last_name: Kalaee
- first_name: Paul
  full_name: Dieterle, Paul
  last_name: Dieterle
- first_name: Oskar
  full_name: Painter, Oskar
  last_name: Painter
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
citation:
  ama: Barzanjeh S, Wulf M, Peruzzo M, et al. Mechanical on chip microwave circulator.
    <i>Nature Communications</i>. 2017;8(1). doi:<a href="https://doi.org/10.1038/s41467-017-01304-x">10.1038/s41467-017-01304-x</a>
  apa: Barzanjeh, S., Wulf, M., Peruzzo, M., Kalaee, M., Dieterle, P., Painter, O.,
    &#38; Fink, J. M. (2017). Mechanical on chip microwave circulator. <i>Nature Communications</i>.
    Nature Publishing Group. <a href="https://doi.org/10.1038/s41467-017-01304-x">https://doi.org/10.1038/s41467-017-01304-x</a>
  chicago: Barzanjeh, Shabir, Matthias Wulf, Matilda Peruzzo, Mahmoud Kalaee, Paul
    Dieterle, Oskar Painter, and Johannes M Fink. “Mechanical on Chip Microwave Circulator.”
    <i>Nature Communications</i>. Nature Publishing Group, 2017. <a href="https://doi.org/10.1038/s41467-017-01304-x">https://doi.org/10.1038/s41467-017-01304-x</a>.
  ieee: S. Barzanjeh <i>et al.</i>, “Mechanical on chip microwave circulator,” <i>Nature
    Communications</i>, vol. 8, no. 1. Nature Publishing Group, 2017.
  ista: Barzanjeh S, Wulf M, Peruzzo M, Kalaee M, Dieterle P, Painter O, Fink JM.
    2017. Mechanical on chip microwave circulator. Nature Communications. 8(1), 1304.
  mla: Barzanjeh, Shabir, et al. “Mechanical on Chip Microwave Circulator.” <i>Nature
    Communications</i>, vol. 8, no. 1, 1304, Nature Publishing Group, 2017, doi:<a
    href="https://doi.org/10.1038/s41467-017-01304-x">10.1038/s41467-017-01304-x</a>.
  short: S. Barzanjeh, M. Wulf, M. Peruzzo, M. Kalaee, P. Dieterle, O. Painter, J.M.
    Fink, Nature Communications 8 (2017).
date_created: 2018-12-11T11:48:33Z
date_published: 2017-10-16T00:00:00Z
date_updated: 2023-09-27T12:11:28Z
day: '16'
ddc:
- '539'
department:
- _id: JoFi
doi: 10.1038/s41467-017-01304-x
ec_funded: 1
external_id:
  isi:
  - '000412999700021'
file:
- access_level: open_access
  checksum: b68dafa71d1834c23b742cd9987a3d5f
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:15:25Z
  date_updated: 2020-07-14T12:48:06Z
  file_id: '5145'
  file_name: IST-2017-867-v1+1_s41467-017-01304-x.pdf
  file_size: 1467696
  relation: main_file
file_date_updated: 2020-07-14T12:48:06Z
has_accepted_license: '1'
intvolume: '         8'
isi: 1
issue: '1'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 257EB838-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '732894'
  name: Hybrid Optomechanical Technologies
- _id: 258047B6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '707438'
  name: 'Microwave-to-Optical Quantum Link: Quantum Teleportation and Quantum Illumination
    with cavity Optomechanics'
publication: Nature Communications
publication_identifier:
  issn:
  - '20411723'
publication_status: published
publisher: Nature Publishing Group
publist_id: '6855'
pubrep_id: '867'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mechanical on chip microwave circulator
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 8
year: '2017'
...
---
_id: '7980'
abstract:
- lang: eng
  text: In this part, the use of polysaccharides, either directly through composite
    approaches, or by carbonization will be described. In many cases, materials are
    obtained which are competitive in terms of capacitance and cycle lifetime. In
    this part, the use of polysaccharides, either directly through composite approaches,
    or by carbonization will be described. In many cases, materials are obtained which
    are competitive in terms of capacitance and cycle lifetime. The following part
    will focus mainly on cellulosic composites with conductive polymers since cellulose
    is most abundant and therefore has attracted much more research interest in this
    field whereas in the second part also other polysaccharides, such as chitin, xylans,
    alginates, pectins, dextrans and caragenaans have been used in carbonization experiments.
alternative_title:
- SpringerBriefs in Molecular Science
article_processing_charge: No
author:
- first_name: Soon
  full_name: Yee Liew, Soon
  last_name: Yee Liew
- first_name: Wim
  full_name: Thielemans, Wim
  last_name: Thielemans
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Stefan
  full_name: Spirk, Stefan
  last_name: Spirk
citation:
  ama: 'Yee Liew S, Thielemans W, Freunberger SA, Spirk S. Polysaccharides in supercapacitors.
    In: Yee Liew S, Thielemans W, Freunberger SA, Spirk S, eds. <i>Polysaccharide
    Based Supercapacitors</i>. Springer Nature; 2017:15-53. doi:<a href="https://doi.org/10.1007/978-3-319-50754-5_2">10.1007/978-3-319-50754-5_2</a>'
  apa: Yee Liew, S., Thielemans, W., Freunberger, S. A., &#38; Spirk, S. (2017). Polysaccharides
    in supercapacitors. In S. Yee Liew, W. Thielemans, S. A. Freunberger, &#38; S.
    Spirk (Eds.), <i>Polysaccharide Based Supercapacitors</i> (pp. 15–53). Springer
    Nature. <a href="https://doi.org/10.1007/978-3-319-50754-5_2">https://doi.org/10.1007/978-3-319-50754-5_2</a>
  chicago: Yee Liew, Soon, Wim Thielemans, Stefan Alexander Freunberger, and Stefan
    Spirk. “Polysaccharides in Supercapacitors.” In <i>Polysaccharide Based Supercapacitors</i>,
    edited by Soon Yee Liew, Wim Thielemans, Stefan Alexander Freunberger, and Stefan
    Spirk, 15–53. Springer Nature, 2017. <a href="https://doi.org/10.1007/978-3-319-50754-5_2">https://doi.org/10.1007/978-3-319-50754-5_2</a>.
  ieee: S. Yee Liew, W. Thielemans, S. A. Freunberger, and S. Spirk, “Polysaccharides
    in supercapacitors,” in <i>Polysaccharide Based Supercapacitors</i>, S. Yee Liew,
    W. Thielemans, S. A. Freunberger, and S. Spirk, Eds. Springer Nature, 2017, pp.
    15–53.
  ista: 'Yee Liew S, Thielemans W, Freunberger SA, Spirk S. 2017.Polysaccharides in
    supercapacitors. In: Polysaccharide Based Supercapacitors. SpringerBriefs in Molecular
    Science, , 15–53.'
  mla: Yee Liew, Soon, et al. “Polysaccharides in Supercapacitors.” <i>Polysaccharide
    Based Supercapacitors</i>, edited by Soon Yee Liew et al., Springer Nature, 2017,
    pp. 15–53, doi:<a href="https://doi.org/10.1007/978-3-319-50754-5_2">10.1007/978-3-319-50754-5_2</a>.
  short: S. Yee Liew, W. Thielemans, S.A. Freunberger, S. Spirk, in:, S. Yee Liew,
    W. Thielemans, S.A. Freunberger, S. Spirk (Eds.), Polysaccharide Based Supercapacitors,
    Springer Nature, 2017, pp. 15–53.
date_created: 2020-06-19T08:11:08Z
date_published: 2017-03-26T00:00:00Z
date_updated: 2021-01-12T08:16:19Z
day: '26'
ddc:
- '540'
- '541'
doi: 10.1007/978-3-319-50754-5_2
editor:
- first_name: Soon
  full_name: Yee Liew, Soon
  last_name: Yee Liew
- first_name: Wim
  full_name: Thielemans, Wim
  last_name: Thielemans
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Stefan
  full_name: Spirk, Stefan
  last_name: Spirk
extern: '1'
file:
- access_level: open_access
  checksum: 4182aeee32c9263a626a7e522f1934f5
  content_type: application/pdf
  creator: sfreunbe
  date_created: 2020-06-29T14:13:44Z
  date_updated: 2020-07-14T12:48:06Z
  file_id: '8048'
  file_name: Final_EPNOE.pdf
  file_size: 3339826
  relation: main_file
file_date_updated: 2020-07-14T12:48:06Z
has_accepted_license: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Submitted Version
page: 15-53
publication: Polysaccharide Based Supercapacitors
publication_identifier:
  isbn:
  - '9783319507538'
  - '9783319507545'
  issn:
  - 2191-5407
  - 2191-5415
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Polysaccharides in supercapacitors
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2017'
...
---
_id: '7981'
abstract:
- lang: ger
  text: Aprotische Natrium‐O2‐Batterien basieren auf der reversiblen Bildung und Auflösung
    von Natriumsuperoxid (NaO2) während des Zellbetriebs. Nebenreaktionen des Elektrolyten
    und der Elektrode mit dem stark nukleophilen und basischen NaO2 führen zu mangelhafter
    Zyklenstabilität. Seine Reaktivität allein kann die Nebenreaktionen und schlechte
    Reversibilität jedoch nicht schlüssig erklären. Hier wird gezeigt, dass Singulett‐Sauerstoff
    (1O2) in allen Phasen des Betriebs entsteht und eine Hauptursache für Nebenreaktionen
    ist. 1O2 wurde in situ und ex situ mit einem 1O2‐Fänger detektiert, der schnell
    und selektiv ein Addukt mit 1O2 bildet. Mechanistisch betrachtet entsteht 1O2
    entweder durch protonenunterstützte Disproportionierung von Superoxid während
    des Entladens, Lagerns und Ladens unter ca. 3.3 V oder durch direkte elektrochemische
    1O2‐Entwicklung über ca. 3.3 V. Spuren von Wasser ermöglichen hohe Kapazitäten,
    beschleunigen aber auch Nebenreaktionen. Daher muss das hochreaktive 1O2 unbedingt
    kontrolliert werden, um die Zelle reversibel zu betreiben.
article_processing_charge: No
article_type: original
author:
- first_name: Lukas
  full_name: Schafzahl, Lukas
  last_name: Schafzahl
- first_name: Nika
  full_name: Mahne, Nika
  last_name: Mahne
- first_name: Bettina
  full_name: Schafzahl, Bettina
  last_name: Schafzahl
- first_name: Martin
  full_name: Wilkening, Martin
  last_name: Wilkening
- first_name: Christian
  full_name: Slugovc, Christian
  last_name: Slugovc
- first_name: Sergey M.
  full_name: Borisov, Sergey M.
  last_name: Borisov
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
citation:
  ama: Schafzahl L, Mahne N, Schafzahl B, et al. Singulett-Sauerstoff in der aprotischen
    Natrium-O2-Batterie. <i>Angewandte Chemie</i>. 2017;129(49):15934-15938. doi:<a
    href="https://doi.org/10.1002/ange.201709351">10.1002/ange.201709351</a>
  apa: Schafzahl, L., Mahne, N., Schafzahl, B., Wilkening, M., Slugovc, C., Borisov,
    S. M., &#38; Freunberger, S. A. (2017). Singulett-Sauerstoff in der aprotischen
    Natrium-O2-Batterie. <i>Angewandte Chemie</i>. Wiley. <a href="https://doi.org/10.1002/ange.201709351">https://doi.org/10.1002/ange.201709351</a>
  chicago: Schafzahl, Lukas, Nika Mahne, Bettina Schafzahl, Martin Wilkening, Christian
    Slugovc, Sergey M. Borisov, and Stefan Alexander Freunberger. “Singulett-Sauerstoff
    in Der Aprotischen Natrium-O2-Batterie.” <i>Angewandte Chemie</i>. Wiley, 2017.
    <a href="https://doi.org/10.1002/ange.201709351">https://doi.org/10.1002/ange.201709351</a>.
  ieee: L. Schafzahl <i>et al.</i>, “Singulett-Sauerstoff in der aprotischen Natrium-O2-Batterie,”
    <i>Angewandte Chemie</i>, vol. 129, no. 49. Wiley, pp. 15934–15938, 2017.
  ista: Schafzahl L, Mahne N, Schafzahl B, Wilkening M, Slugovc C, Borisov SM, Freunberger
    SA. 2017. Singulett-Sauerstoff in der aprotischen Natrium-O2-Batterie. Angewandte
    Chemie. 129(49), 15934–15938.
  mla: Schafzahl, Lukas, et al. “Singulett-Sauerstoff in Der Aprotischen Natrium-O2-Batterie.”
    <i>Angewandte Chemie</i>, vol. 129, no. 49, Wiley, 2017, pp. 15934–38, doi:<a
    href="https://doi.org/10.1002/ange.201709351">10.1002/ange.201709351</a>.
  short: L. Schafzahl, N. Mahne, B. Schafzahl, M. Wilkening, C. Slugovc, S.M. Borisov,
    S.A. Freunberger, Angewandte Chemie 129 (2017) 15934–15938.
date_created: 2020-06-19T08:22:06Z
date_published: 2017-12-04T00:00:00Z
date_updated: 2021-01-12T08:16:20Z
day: '04'
ddc:
- '540'
doi: 10.1002/ange.201709351
extern: '1'
file:
- access_level: open_access
  checksum: 38f2c2383bc9573f6770c1dba72d7a9a
  content_type: application/pdf
  creator: dernst
  date_created: 2020-06-19T11:39:09Z
  date_updated: 2020-07-14T12:48:06Z
  file_id: '7987'
  file_name: 2017_AngChemieDT_Schafzahl.pdf
  file_size: 988125
  relation: main_file
file_date_updated: 2020-07-14T12:48:06Z
has_accepted_license: '1'
intvolume: '       129'
issue: '49'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '12'
oa: 1
oa_version: Published Version
page: 15934-15938
publication: Angewandte Chemie
publication_identifier:
  issn:
  - 0044-8249
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Singulett-Sauerstoff in der aprotischen Natrium-O2-Batterie
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 129
year: '2017'
...
---
_id: '7982'
abstract:
- lang: eng
  text: Beyond-intercalation batteries promise a step-change in energy storage compared
    to intercalation-based lithium-ion and sodium-ion batteries. However, only performance
    metrics that include all cell components and operation parameters can tell whether
    a true advance over intercalation batteries has been achieved.
article_number: '17091'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
citation:
  ama: Freunberger SA. True performance metrics in beyond-intercalation batteries.
    <i>Nature Energy</i>. 2017;2(7). doi:<a href="https://doi.org/10.1038/nenergy.2017.91">10.1038/nenergy.2017.91</a>
  apa: Freunberger, S. A. (2017). True performance metrics in beyond-intercalation
    batteries. <i>Nature Energy</i>. Springer Nature. <a href="https://doi.org/10.1038/nenergy.2017.91">https://doi.org/10.1038/nenergy.2017.91</a>
  chicago: Freunberger, Stefan Alexander. “True Performance Metrics in Beyond-Intercalation
    Batteries.” <i>Nature Energy</i>. Springer Nature, 2017. <a href="https://doi.org/10.1038/nenergy.2017.91">https://doi.org/10.1038/nenergy.2017.91</a>.
  ieee: S. A. Freunberger, “True performance metrics in beyond-intercalation batteries,”
    <i>Nature Energy</i>, vol. 2, no. 7. Springer Nature, 2017.
  ista: Freunberger SA. 2017. True performance metrics in beyond-intercalation batteries.
    Nature Energy. 2(7), 17091.
  mla: Freunberger, Stefan Alexander. “True Performance Metrics in Beyond-Intercalation
    Batteries.” <i>Nature Energy</i>, vol. 2, no. 7, 17091, Springer Nature, 2017,
    doi:<a href="https://doi.org/10.1038/nenergy.2017.91">10.1038/nenergy.2017.91</a>.
  short: S.A. Freunberger, Nature Energy 2 (2017).
date_created: 2020-06-19T08:23:47Z
date_published: 2017-06-05T00:00:00Z
date_updated: 2021-01-12T08:16:20Z
day: '05'
ddc:
- '540'
- '546'
- '541'
doi: 10.1038/nenergy.2017.91
extern: '1'
external_id:
  arxiv:
  - '2002.00712'
file:
- access_level: open_access
  checksum: 2564255b76f5346a32e764dbfd17fa2f
  content_type: application/pdf
  creator: sfreunbe
  date_created: 2020-06-29T13:26:55Z
  date_updated: 2020-07-14T12:48:06Z
  file_id: '8046'
  file_name: NEnergy_Comment_final.pdf
  file_size: 817665
  relation: main_file
file_date_updated: 2020-07-14T12:48:06Z
has_accepted_license: '1'
intvolume: '         2'
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2002.00712
month: '06'
oa: 1
oa_version: Submitted Version
publication: Nature Energy
publication_identifier:
  issn:
  - 2058-7546
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: True performance metrics in beyond-intercalation batteries
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2017'
...
---
_id: '7986'
article_number: '17036 '
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Nika
  full_name: Mahne, Nika
  last_name: Mahne
- first_name: Bettina
  full_name: Schafzahl, Bettina
  last_name: Schafzahl
- first_name: Christian
  full_name: Leypold, Christian
  last_name: Leypold
- first_name: Mario
  full_name: Leypold, Mario
  last_name: Leypold
- first_name: Sandra
  full_name: Grumm, Sandra
  last_name: Grumm
- first_name: Anita
  full_name: Leitgeb, Anita
  last_name: Leitgeb
- first_name: Gernot A.
  full_name: Strohmeier, Gernot A.
  last_name: Strohmeier
- first_name: Martin
  full_name: Wilkening, Martin
  last_name: Wilkening
- first_name: Olivier
  full_name: Fontaine, Olivier
  last_name: Fontaine
- first_name: Denis
  full_name: Kramer, Denis
  last_name: Kramer
- first_name: Christian
  full_name: Slugovc, Christian
  last_name: Slugovc
- first_name: Sergey M.
  full_name: Borisov, Sergey M.
  last_name: Borisov
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
citation:
  ama: Mahne N, Schafzahl B, Leypold C, et al. Singlet oxygen generation as a major
    cause for parasitic reactions during cycling of aprotic lithium–oxygen batteries.
    <i>Nature Energy</i>. 2017;2(5). doi:<a href="https://doi.org/10.1038/nenergy.2017.36">10.1038/nenergy.2017.36</a>
  apa: Mahne, N., Schafzahl, B., Leypold, C., Leypold, M., Grumm, S., Leitgeb, A.,
    … Freunberger, S. A. (2017). Singlet oxygen generation as a major cause for parasitic
    reactions during cycling of aprotic lithium–oxygen batteries. <i>Nature Energy</i>.
    Springer Nature. <a href="https://doi.org/10.1038/nenergy.2017.36">https://doi.org/10.1038/nenergy.2017.36</a>
  chicago: Mahne, Nika, Bettina Schafzahl, Christian Leypold, Mario Leypold, Sandra
    Grumm, Anita Leitgeb, Gernot A. Strohmeier, et al. “Singlet Oxygen Generation
    as a Major Cause for Parasitic Reactions during Cycling of Aprotic Lithium–Oxygen
    Batteries.” <i>Nature Energy</i>. Springer Nature, 2017. <a href="https://doi.org/10.1038/nenergy.2017.36">https://doi.org/10.1038/nenergy.2017.36</a>.
  ieee: N. Mahne <i>et al.</i>, “Singlet oxygen generation as a major cause for parasitic
    reactions during cycling of aprotic lithium–oxygen batteries,” <i>Nature Energy</i>,
    vol. 2, no. 5. Springer Nature, 2017.
  ista: Mahne N, Schafzahl B, Leypold C, Leypold M, Grumm S, Leitgeb A, Strohmeier
    GA, Wilkening M, Fontaine O, Kramer D, Slugovc C, Borisov SM, Freunberger SA.
    2017. Singlet oxygen generation as a major cause for parasitic reactions during
    cycling of aprotic lithium–oxygen batteries. Nature Energy. 2(5), 17036.
  mla: Mahne, Nika, et al. “Singlet Oxygen Generation as a Major Cause for Parasitic
    Reactions during Cycling of Aprotic Lithium–Oxygen Batteries.” <i>Nature Energy</i>,
    vol. 2, no. 5, 17036, Springer Nature, 2017, doi:<a href="https://doi.org/10.1038/nenergy.2017.36">10.1038/nenergy.2017.36</a>.
  short: N. Mahne, B. Schafzahl, C. Leypold, M. Leypold, S. Grumm, A. Leitgeb, G.A.
    Strohmeier, M. Wilkening, O. Fontaine, D. Kramer, C. Slugovc, S.M. Borisov, S.A.
    Freunberger, Nature Energy 2 (2017).
date_created: 2020-06-19T10:42:33Z
date_published: 2017-03-20T00:00:00Z
date_updated: 2021-01-12T08:16:21Z
day: '20'
doi: 10.1038/nenergy.2017.36
extern: '1'
external_id:
  arxiv:
  - '1711.10340'
intvolume: '         2'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1711.10340
month: '03'
oa: 1
oa_version: Preprint
publication: Nature Energy
publication_identifier:
  issn:
  - 2058-7546
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Singlet oxygen generation as a major cause for parasitic reactions during cycling
  of aprotic lithium–oxygen batteries
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2017'
...
---
_id: '799'
abstract:
- lang: eng
  text: Membrane traffic at the trans-Golgi network (TGN) is crucial for correctly
    distributing various membrane proteins to their destination. Polarly localized
    auxin efflux proteins, including PIN-FORMED1 (PIN1), are dynamically transported
    between the endosomes and the plasma membrane (PM) in the plant cells. The intracellular
    trafficking of PIN1 protein is sensitive to a fungal toxin brefeldin A (BFA),
    which is known to inhibit guanine-nucleotide exchange factors for ADP ribosylation
    factors (ARF GEFs) such as GNOM. However, the molecular details of the BFA-sensitive
    trafficking pathway have not been revealed fully. In a previous study, we have
    identified an Arabidopsis mutant BFA-visualized endocytic trafficking defective
    3 (ben3) which exhibited reduced sensitivity to BFA in terms of BFA-induced intracellular
    PIN1 agglomeration. Here, we show that BEN3 encodes a member of BIG family ARF
    GEFs, BIG2. Fluorescent proteins tagged BEN3/BIG2 co-localized with markers for
    TGN / early endosome (EE). Inspection of conditionally induced de novo synthesized
    PIN1 confirmed that its secretion to the PM is BFA-sensitive and established BEN3/BIG2
    as a crucial component of this BFA action at the level of TGN/EE. Furthermore,
    ben3 mutation alleviated BFA-induced agglomeration of another TGN-localized ARF
    GEF BEN1/MIN7. Taken together our results suggest that BEN3/BIG2 is an ARF GEF
    component, which confers BFA sensitivity to the TGN/EE in Arabidopsis.
article_number: 1801-1811
article_processing_charge: No
author:
- first_name: Saeko
  full_name: Kitakura, Saeko
  last_name: Kitakura
- first_name: Maciek
  full_name: Adamowski, Maciek
  id: 45F536D2-F248-11E8-B48F-1D18A9856A87
  last_name: Adamowski
  orcid: 0000-0001-6463-5257
- first_name: Yuki
  full_name: Matsuura, Yuki
  last_name: Matsuura
- first_name: Luca
  full_name: Santuari, Luca
  last_name: Santuari
- first_name: Hirotaka
  full_name: Kouno, Hirotaka
  last_name: Kouno
- first_name: Kohei
  full_name: Arima, Kohei
  last_name: Arima
- first_name: Christian
  full_name: Hardtke, Christian
  last_name: Hardtke
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Tatsuo
  full_name: Kakimoto, Tatsuo
  last_name: Kakimoto
- first_name: Hirokazu
  full_name: Tanaka, Hirokazu
  last_name: Tanaka
citation:
  ama: Kitakura S, Adamowski M, Matsuura Y, et al. BEN3/BIG2 ARF GEF is involved in
    brefeldin a-sensitive trafficking at the trans-Golgi network/early endosome in
    Arabidopsis thaliana. <i>Plant and Cell Physiology</i>. 2017;58(10). doi:<a href="https://doi.org/10.1093/pcp/pcx118">10.1093/pcp/pcx118</a>
  apa: Kitakura, S., Adamowski, M., Matsuura, Y., Santuari, L., Kouno, H., Arima,
    K., … Tanaka, H. (2017). BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive
    trafficking at the trans-Golgi network/early endosome in Arabidopsis thaliana.
    <i>Plant and Cell Physiology</i>. Oxford University Press. <a href="https://doi.org/10.1093/pcp/pcx118">https://doi.org/10.1093/pcp/pcx118</a>
  chicago: Kitakura, Saeko, Maciek Adamowski, Yuki Matsuura, Luca Santuari, Hirotaka
    Kouno, Kohei Arima, Christian Hardtke, Jiří Friml, Tatsuo Kakimoto, and Hirokazu
    Tanaka. “BEN3/BIG2 ARF GEF Is Involved in Brefeldin a-Sensitive Trafficking at
    the Trans-Golgi Network/Early Endosome in Arabidopsis Thaliana.” <i>Plant and
    Cell Physiology</i>. Oxford University Press, 2017. <a href="https://doi.org/10.1093/pcp/pcx118">https://doi.org/10.1093/pcp/pcx118</a>.
  ieee: S. Kitakura <i>et al.</i>, “BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive
    trafficking at the trans-Golgi network/early endosome in Arabidopsis thaliana,”
    <i>Plant and Cell Physiology</i>, vol. 58, no. 10. Oxford University Press, 2017.
  ista: Kitakura S, Adamowski M, Matsuura Y, Santuari L, Kouno H, Arima K, Hardtke
    C, Friml J, Kakimoto T, Tanaka H. 2017. BEN3/BIG2 ARF GEF is involved in brefeldin
    a-sensitive trafficking at the trans-Golgi network/early endosome in Arabidopsis
    thaliana. Plant and Cell Physiology. 58(10), 1801–1811.
  mla: Kitakura, Saeko, et al. “BEN3/BIG2 ARF GEF Is Involved in Brefeldin a-Sensitive
    Trafficking at the Trans-Golgi Network/Early Endosome in Arabidopsis Thaliana.”
    <i>Plant and Cell Physiology</i>, vol. 58, no. 10, 1801–1811, Oxford University
    Press, 2017, doi:<a href="https://doi.org/10.1093/pcp/pcx118">10.1093/pcp/pcx118</a>.
  short: S. Kitakura, M. Adamowski, Y. Matsuura, L. Santuari, H. Kouno, K. Arima,
    C. Hardtke, J. Friml, T. Kakimoto, H. Tanaka, Plant and Cell Physiology 58 (2017).
date_created: 2018-12-11T11:48:34Z
date_published: 2017-08-21T00:00:00Z
date_updated: 2023-09-27T11:00:19Z
day: '21'
ddc:
- '581'
department:
- _id: JiFr
doi: 10.1093/pcp/pcx118
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publication: Plant and Cell Physiology
publication_identifier:
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publication_status: published
publisher: Oxford University Press
publist_id: '6854'
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quality_controlled: '1'
scopus_import: '1'
status: public
title: BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive trafficking at the trans-Golgi
  network/early endosome in Arabidopsis thaliana
type: journal_article
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...
---
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abstract:
- lang: eng
  text: Gamma oscillations (30–150 Hz) in neuronal networks are associated with the
    processing and recall of information. We measured local field potentials in the
    dentate gyrus of freely moving mice and found that gamma activity occurs in bursts,
    which are highly heterogeneous in their spatial extensions, ranging from focal
    to global coherent events. Synaptic communication among perisomatic-inhibitory
    interneurons (PIIs) is thought to play an important role in the generation of
    hippocampal gamma patterns. However, how neuronal circuits can generate synchronous
    oscillations at different spatial scales is unknown. We analyzed paired recordings
    in dentate gyrus slices and show that synaptic signaling at interneuron-interneuron
    synapses is distance dependent. Synaptic strength declines whereas the duration
    of inhibitory signals increases with axonal distance among interconnected PIIs.
    Using neuronal network modeling, we show that distance-dependent inhibition generates
    multiple highly synchronous focal gamma bursts allowing the network to process
    complex inputs in parallel in flexibly organized neuronal centers.
article_number: '758'
article_processing_charge: No
author:
- first_name: Michael
  full_name: Strüber, Michael
  last_name: Strüber
- first_name: Jonas
  full_name: Sauer, Jonas
  last_name: Sauer
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
- first_name: Marlene
  full_name: Bartos, Marlene
  last_name: Bartos
citation:
  ama: Strüber M, Sauer J, Jonas PM, Bartos M. Distance-dependent inhibition facilitates
    focality of gamma oscillations in the dentate gyrus. <i>Nature Communications</i>.
    2017;8(1). doi:<a href="https://doi.org/10.1038/s41467-017-00936-3">10.1038/s41467-017-00936-3</a>
  apa: Strüber, M., Sauer, J., Jonas, P. M., &#38; Bartos, M. (2017). Distance-dependent
    inhibition facilitates focality of gamma oscillations in the dentate gyrus. <i>Nature
    Communications</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/s41467-017-00936-3">https://doi.org/10.1038/s41467-017-00936-3</a>
  chicago: Strüber, Michael, Jonas Sauer, Peter M Jonas, and Marlene Bartos. “Distance-Dependent
    Inhibition Facilitates Focality of Gamma Oscillations in the Dentate Gyrus.” <i>Nature
    Communications</i>. Nature Publishing Group, 2017. <a href="https://doi.org/10.1038/s41467-017-00936-3">https://doi.org/10.1038/s41467-017-00936-3</a>.
  ieee: M. Strüber, J. Sauer, P. M. Jonas, and M. Bartos, “Distance-dependent inhibition
    facilitates focality of gamma oscillations in the dentate gyrus,” <i>Nature Communications</i>,
    vol. 8, no. 1. Nature Publishing Group, 2017.
  ista: Strüber M, Sauer J, Jonas PM, Bartos M. 2017. Distance-dependent inhibition
    facilitates focality of gamma oscillations in the dentate gyrus. Nature Communications.
    8(1), 758.
  mla: Strüber, Michael, et al. “Distance-Dependent Inhibition Facilitates Focality
    of Gamma Oscillations in the Dentate Gyrus.” <i>Nature Communications</i>, vol.
    8, no. 1, 758, Nature Publishing Group, 2017, doi:<a href="https://doi.org/10.1038/s41467-017-00936-3">10.1038/s41467-017-00936-3</a>.
  short: M. Strüber, J. Sauer, P.M. Jonas, M. Bartos, Nature Communications 8 (2017).
date_created: 2018-12-11T11:48:34Z
date_published: 2017-10-02T00:00:00Z
date_updated: 2023-09-27T10:59:41Z
day: '02'
ddc:
- '571'
department:
- _id: PeJo
doi: 10.1038/s41467-017-00936-3
ec_funded: 1
external_id:
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  - '000412053100004'
file:
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  date_created: 2018-12-12T10:15:17Z
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  file_id: '5135'
  file_name: IST-2017-914-v1+1_s41467-017-00936-3.pdf
  file_size: 4261832
  relation: main_file
file_date_updated: 2020-07-14T12:48:07Z
has_accepted_license: '1'
intvolume: '         8'
isi: 1
issue: '1'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 25C0F108-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '268548'
  name: Nanophysiology of fast-spiking, parvalbumin-expressing GABAergic interneurons
publication: Nature Communications
publication_identifier:
  issn:
  - '20411723'
publication_status: published
publisher: Nature Publishing Group
publist_id: '6853'
pubrep_id: '914'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Distance-dependent inhibition facilitates focality of gamma oscillations in
  the dentate gyrus
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
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...
