---
_id: '720'
abstract:
- lang: eng
  text: 'Advances in multi-unit recordings pave the way for statistical modeling of
    activity patterns in large neural populations. Recent studies have shown that
    the summed activity of all neurons strongly shapes the population response. A
    separate recent finding has been that neural populations also exhibit criticality,
    an anomalously large dynamic range for the probabilities of different population
    activity patterns. Motivated by these two observations, we introduce a class of
    probabilistic models which takes into account the prior knowledge that the neural
    population could be globally coupled and close to critical. These models consist
    of an energy function which parametrizes interactions between small groups of
    neurons, and an arbitrary positive, strictly increasing, and twice differentiable
    function which maps the energy of a population pattern to its probability. We
    show that: 1) augmenting a pairwise Ising model with a nonlinearity yields an
    accurate description of the activity of retinal ganglion cells which outperforms
    previous models based on the summed activity of neurons; 2) prior knowledge that
    the population is critical translates to prior expectations about the shape of
    the nonlinearity; 3) the nonlinearity admits an interpretation in terms of a continuous
    latent variable globally coupling the system whose distribution we can infer from
    data. Our method is independent of the underlying system’s state space; hence,
    it can be applied to other systems such as natural scenes or amino acid sequences
    of proteins which are also known to exhibit criticality.'
article_number: e1005763
article_processing_charge: Yes
author:
- first_name: Jan
  full_name: Humplik, Jan
  id: 2E9627A8-F248-11E8-B48F-1D18A9856A87
  last_name: Humplik
- first_name: Gasper
  full_name: Tkacik, Gasper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkacik
  orcid: 0000-0002-6699-1455
citation:
  ama: Humplik J, Tkačik G. Probabilistic models for neural populations that naturally
    capture global coupling and criticality. <i>PLoS Computational Biology</i>. 2017;13(9).
    doi:<a href="https://doi.org/10.1371/journal.pcbi.1005763">10.1371/journal.pcbi.1005763</a>
  apa: Humplik, J., &#38; Tkačik, G. (2017). Probabilistic models for neural populations
    that naturally capture global coupling and criticality. <i>PLoS Computational
    Biology</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pcbi.1005763">https://doi.org/10.1371/journal.pcbi.1005763</a>
  chicago: Humplik, Jan, and Gašper Tkačik. “Probabilistic Models for Neural Populations
    That Naturally Capture Global Coupling and Criticality.” <i>PLoS Computational
    Biology</i>. Public Library of Science, 2017. <a href="https://doi.org/10.1371/journal.pcbi.1005763">https://doi.org/10.1371/journal.pcbi.1005763</a>.
  ieee: J. Humplik and G. Tkačik, “Probabilistic models for neural populations that
    naturally capture global coupling and criticality,” <i>PLoS Computational Biology</i>,
    vol. 13, no. 9. Public Library of Science, 2017.
  ista: Humplik J, Tkačik G. 2017. Probabilistic models for neural populations that
    naturally capture global coupling and criticality. PLoS Computational Biology.
    13(9), e1005763.
  mla: Humplik, Jan, and Gašper Tkačik. “Probabilistic Models for Neural Populations
    That Naturally Capture Global Coupling and Criticality.” <i>PLoS Computational
    Biology</i>, vol. 13, no. 9, e1005763, Public Library of Science, 2017, doi:<a
    href="https://doi.org/10.1371/journal.pcbi.1005763">10.1371/journal.pcbi.1005763</a>.
  short: J. Humplik, G. Tkačik, PLoS Computational Biology 13 (2017).
date_created: 2018-12-11T11:48:08Z
date_published: 2017-09-19T00:00:00Z
date_updated: 2021-01-12T08:12:21Z
day: '19'
ddc:
- '530'
- '571'
department:
- _id: GaTk
doi: 10.1371/journal.pcbi.1005763
file:
- access_level: open_access
  checksum: 81107096c19771c36ddbe6f0282a3acb
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:18:30Z
  date_updated: 2020-07-14T12:47:53Z
  file_id: '5352'
  file_name: IST-2017-884-v1+1_journal.pcbi.1005763.pdf
  file_size: 14167050
  relation: main_file
file_date_updated: 2020-07-14T12:47:53Z
has_accepted_license: '1'
intvolume: '        13'
issue: '9'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 255008E4-B435-11E9-9278-68D0E5697425
  grant_number: RGP0065/2012
  name: Information processing and computation in fish groups
- _id: 254D1A94-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 25651-N26
  name: Sensitivity to higher-order statistics in natural scenes
publication: PLoS Computational Biology
publication_identifier:
  issn:
  - 1553734X
publication_status: published
publisher: Public Library of Science
publist_id: '6960'
pubrep_id: '884'
quality_controlled: '1'
scopus_import: 1
status: public
title: Probabilistic models for neural populations that naturally capture global coupling
  and criticality
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2017'
...
---
_id: '721'
abstract:
- lang: eng
  text: 'Let S be a positivity-preserving symmetric linear operator acting on bounded
    functions. The nonlinear equation -1/m=z+Sm with a parameter z in the complex
    upper half-plane ℍ has a unique solution m with values in ℍ. We show that the
    z-dependence of this solution can be represented as the Stieltjes transforms of
    a family of probability measures v on ℝ. Under suitable conditions on S, we show
    that v has a real analytic density apart from finitely many algebraic singularities
    of degree at most 3. Our motivation comes from large random matrices. The solution
    m determines the density of eigenvalues of two prominent matrix ensembles: (i)
    matrices with centered independent entries whose variances are given by S and
    (ii) matrices with correlated entries with a translation-invariant correlation
    structure. Our analysis shows that the limiting eigenvalue density has only square
    root singularities or cubic root cusps; no other singularities occur.'
author:
- first_name: Oskari H
  full_name: Ajanki, Oskari H
  id: 36F2FB7E-F248-11E8-B48F-1D18A9856A87
  last_name: Ajanki
- first_name: Torben H
  full_name: Krüger, Torben H
  id: 3020C786-F248-11E8-B48F-1D18A9856A87
  last_name: Krüger
  orcid: 0000-0002-4821-3297
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
citation:
  ama: Ajanki OH, Krüger TH, Erdös L. Singularities of solutions to quadratic vector
    equations on the complex upper half plane. <i>Communications on Pure and Applied
    Mathematics</i>. 2017;70(9):1672-1705. doi:<a href="https://doi.org/10.1002/cpa.21639">10.1002/cpa.21639</a>
  apa: Ajanki, O. H., Krüger, T. H., &#38; Erdös, L. (2017). Singularities of solutions
    to quadratic vector equations on the complex upper half plane. <i>Communications
    on Pure and Applied Mathematics</i>. Wiley-Blackwell. <a href="https://doi.org/10.1002/cpa.21639">https://doi.org/10.1002/cpa.21639</a>
  chicago: Ajanki, Oskari H, Torben H Krüger, and László Erdös. “Singularities of
    Solutions to Quadratic Vector Equations on the Complex Upper Half Plane.” <i>Communications
    on Pure and Applied Mathematics</i>. Wiley-Blackwell, 2017. <a href="https://doi.org/10.1002/cpa.21639">https://doi.org/10.1002/cpa.21639</a>.
  ieee: O. H. Ajanki, T. H. Krüger, and L. Erdös, “Singularities of solutions to quadratic
    vector equations on the complex upper half plane,” <i>Communications on Pure and
    Applied Mathematics</i>, vol. 70, no. 9. Wiley-Blackwell, pp. 1672–1705, 2017.
  ista: Ajanki OH, Krüger TH, Erdös L. 2017. Singularities of solutions to quadratic
    vector equations on the complex upper half plane. Communications on Pure and Applied
    Mathematics. 70(9), 1672–1705.
  mla: Ajanki, Oskari H., et al. “Singularities of Solutions to Quadratic Vector Equations
    on the Complex Upper Half Plane.” <i>Communications on Pure and Applied Mathematics</i>,
    vol. 70, no. 9, Wiley-Blackwell, 2017, pp. 1672–705, doi:<a href="https://doi.org/10.1002/cpa.21639">10.1002/cpa.21639</a>.
  short: O.H. Ajanki, T.H. Krüger, L. Erdös, Communications on Pure and Applied Mathematics
    70 (2017) 1672–1705.
date_created: 2018-12-11T11:48:08Z
date_published: 2017-09-01T00:00:00Z
date_updated: 2021-01-12T08:12:24Z
day: '01'
department:
- _id: LaEr
doi: 10.1002/cpa.21639
ec_funded: 1
intvolume: '        70'
issue: '9'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1512.03703
month: '09'
oa: 1
oa_version: Submitted Version
page: 1672 - 1705
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
publication: Communications on Pure and Applied Mathematics
publication_identifier:
  issn:
  - '00103640'
publication_status: published
publisher: Wiley-Blackwell
publist_id: '6959'
quality_controlled: '1'
scopus_import: 1
status: public
title: Singularities of solutions to quadratic vector equations on the complex upper
  half plane
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 70
year: '2017'
...
---
_id: '722'
abstract:
- lang: eng
  text: Plants are sessile organisms rooted in one place. The soil resources that
    plants require are often distributed in a highly heterogeneous pattern. To aid
    foraging, plants have evolved roots whose growth and development are highly responsive
    to soil signals. As a result, 3D root architecture is shaped by myriad environmental
    signals to ensure resource capture is optimised and unfavourable environments
    are avoided. The first signals sensed by newly germinating seeds — gravity and
    light — direct root growth into the soil to aid seedling establishment. Heterogeneous
    soil resources, such as water, nitrogen and phosphate, also act as signals that
    shape 3D root growth to optimise uptake. Root architecture is also modified through
    biotic interactions that include soil fungi and neighbouring plants. This developmental
    plasticity results in a ‘custom-made’ 3D root system that is best adapted to forage
    for resources in each soil environment that a plant colonises.
author:
- first_name: Emily
  full_name: Morris, Emily
  last_name: Morris
- first_name: Marcus
  full_name: Griffiths, Marcus
  last_name: Griffiths
- first_name: Agata
  full_name: Golebiowska, Agata
  last_name: Golebiowska
- first_name: Stefan
  full_name: Mairhofer, Stefan
  last_name: Mairhofer
- first_name: Jasmine
  full_name: Burr Hersey, Jasmine
  last_name: Burr Hersey
- first_name: Tatsuaki
  full_name: Goh, Tatsuaki
  last_name: Goh
- first_name: Daniel
  full_name: Von Wangenheim, Daniel
  id: 49E91952-F248-11E8-B48F-1D18A9856A87
  last_name: Von Wangenheim
  orcid: 0000-0002-6862-1247
- first_name: Brian
  full_name: Atkinson, Brian
  last_name: Atkinson
- first_name: Craig
  full_name: Sturrock, Craig
  last_name: Sturrock
- first_name: Jonathan
  full_name: Lynch, Jonathan
  last_name: Lynch
- first_name: Kris
  full_name: Vissenberg, Kris
  last_name: Vissenberg
- first_name: Karl
  full_name: Ritz, Karl
  last_name: Ritz
- first_name: Darren
  full_name: Wells, Darren
  last_name: Wells
- first_name: Sacha
  full_name: Mooney, Sacha
  last_name: Mooney
- first_name: Malcolm
  full_name: Bennett, Malcolm
  last_name: Bennett
citation:
  ama: Morris E, Griffiths M, Golebiowska A, et al. Shaping 3D root system architecture.
    <i>Current Biology</i>. 2017;27(17):R919-R930. doi:<a href="https://doi.org/10.1016/j.cub.2017.06.043">10.1016/j.cub.2017.06.043</a>
  apa: Morris, E., Griffiths, M., Golebiowska, A., Mairhofer, S., Burr Hersey, J.,
    Goh, T., … Bennett, M. (2017). Shaping 3D root system architecture. <i>Current
    Biology</i>. Cell Press. <a href="https://doi.org/10.1016/j.cub.2017.06.043">https://doi.org/10.1016/j.cub.2017.06.043</a>
  chicago: Morris, Emily, Marcus Griffiths, Agata Golebiowska, Stefan Mairhofer, Jasmine
    Burr Hersey, Tatsuaki Goh, Daniel von Wangenheim, et al. “Shaping 3D Root System
    Architecture.” <i>Current Biology</i>. Cell Press, 2017. <a href="https://doi.org/10.1016/j.cub.2017.06.043">https://doi.org/10.1016/j.cub.2017.06.043</a>.
  ieee: E. Morris <i>et al.</i>, “Shaping 3D root system architecture,” <i>Current
    Biology</i>, vol. 27, no. 17. Cell Press, pp. R919–R930, 2017.
  ista: Morris E, Griffiths M, Golebiowska A, Mairhofer S, Burr Hersey J, Goh T, von
    Wangenheim D, Atkinson B, Sturrock C, Lynch J, Vissenberg K, Ritz K, Wells D,
    Mooney S, Bennett M. 2017. Shaping 3D root system architecture. Current Biology.
    27(17), R919–R930.
  mla: Morris, Emily, et al. “Shaping 3D Root System Architecture.” <i>Current Biology</i>,
    vol. 27, no. 17, Cell Press, 2017, pp. R919–30, doi:<a href="https://doi.org/10.1016/j.cub.2017.06.043">10.1016/j.cub.2017.06.043</a>.
  short: E. Morris, M. Griffiths, A. Golebiowska, S. Mairhofer, J. Burr Hersey, T.
    Goh, D. von Wangenheim, B. Atkinson, C. Sturrock, J. Lynch, K. Vissenberg, K.
    Ritz, D. Wells, S. Mooney, M. Bennett, Current Biology 27 (2017) R919–R930.
date_created: 2018-12-11T11:48:08Z
date_published: 2017-09-11T00:00:00Z
date_updated: 2021-01-12T08:12:29Z
day: '11'
ddc:
- '581'
department:
- _id: JiFr
doi: 10.1016/j.cub.2017.06.043
ec_funded: 1
external_id:
  pmid:
  - '28898665'
file:
- access_level: open_access
  checksum: e45588b21097b408da6276a3e5eedb2e
  content_type: application/pdf
  creator: dernst
  date_created: 2019-04-17T07:46:40Z
  date_updated: 2020-07-14T12:47:54Z
  file_id: '6332'
  file_name: 2017_CurrentBiology_Morris.pdf
  file_size: 1576593
  relation: main_file
file_date_updated: 2020-07-14T12:47:54Z
has_accepted_license: '1'
intvolume: '        27'
issue: '17'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '09'
oa: 1
oa_version: Submitted Version
page: R919 - R930
pmid: 1
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Current Biology
publication_identifier:
  issn:
  - '09609822'
publication_status: published
publisher: Cell Press
publist_id: '6956'
pubrep_id: '982'
quality_controlled: '1'
scopus_import: 1
status: public
title: Shaping 3D root system architecture
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 27
year: '2017'
...
---
_id: '724'
abstract:
- lang: eng
  text: We investigate the stationary and dynamical behavior of an Anderson localized
    chain coupled to a single central bound state. Although this coupling partially
    dilutes the Anderson localized peaks towards nearly resonant sites, the most weight
    of the original peaks remains unchanged. This leads to multifractal wave functions
    with a frozen spectrum of fractal dimensions, which is characteristic for localized
    phases in models with power-law hopping. Using a perturbative approach we identify
    two different dynamical regimes. At weak couplings to the central site, the transport
    of particles and information is logarithmic in time, a feature usually attributed
    to many-body localization. We connect such transport to the persistence of the
    Poisson statistics of level spacings in parts of the spectrum. In contrast, at
    stronger couplings the level repulsion is established in the entire spectrum,
    the problem can be mapped to the Fano resonance, and the transport is ballistic.
acknowledgement: "We  would  like  to  thank  Dmitry  Abanin,  Christophe  De\r\nBeule,
  \ Joel  Moore,  Romain  Vasseur,  and  Norman  Yao  for\r\nmany  stimulating  discussions.
  \ Financial  support  has  been\r\nprovided  by  the  Deutsche  Forschungsgemeinschaft
  \ (DFG)\r\nvia Grant No. TR950/8-1, SFB 1170 “ToCoTronics” and the\r\nENB  Graduate
  \ School  on  Topological  Insulators.  M.S.  was\r\nsupported by Gordon and Betty
  Moore Foundation’s EPiQS\r\nInitiative through Grant No. GBMF4307. F.P. acknowledges\r\nsupport
  from the DFG Research Unit FOR 1807 through Grant\r\nNo. PO 1370/2-1."
article_number: '104203'
author:
- first_name: Daniel
  full_name: Hetterich, Daniel
  last_name: Hetterich
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Fernando
  full_name: Domínguez, Fernando
  last_name: Domínguez
- first_name: Frank
  full_name: Pollmann, Frank
  last_name: Pollmann
- first_name: Björn
  full_name: Trauzettel, Björn
  last_name: Trauzettel
citation:
  ama: Hetterich D, Serbyn M, Domínguez F, Pollmann F, Trauzettel B. Noninteracting
    central site model localization and logarithmic entanglement growth. <i>Physical
    Review B</i>. 2017;96(10). doi:<a href="https://doi.org/10.1103/PhysRevB.96.104203">10.1103/PhysRevB.96.104203</a>
  apa: Hetterich, D., Serbyn, M., Domínguez, F., Pollmann, F., &#38; Trauzettel, B.
    (2017). Noninteracting central site model localization and logarithmic entanglement
    growth. <i>Physical Review B</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevB.96.104203">https://doi.org/10.1103/PhysRevB.96.104203</a>
  chicago: Hetterich, Daniel, Maksym Serbyn, Fernando Domínguez, Frank Pollmann, and
    Björn Trauzettel. “Noninteracting Central Site Model Localization and Logarithmic
    Entanglement Growth.” <i>Physical Review B</i>. American Physical Society, 2017.
    <a href="https://doi.org/10.1103/PhysRevB.96.104203">https://doi.org/10.1103/PhysRevB.96.104203</a>.
  ieee: D. Hetterich, M. Serbyn, F. Domínguez, F. Pollmann, and B. Trauzettel, “Noninteracting
    central site model localization and logarithmic entanglement growth,” <i>Physical
    Review B</i>, vol. 96, no. 10. American Physical Society, 2017.
  ista: Hetterich D, Serbyn M, Domínguez F, Pollmann F, Trauzettel B. 2017. Noninteracting
    central site model localization and logarithmic entanglement growth. Physical
    Review B. 96(10), 104203.
  mla: Hetterich, Daniel, et al. “Noninteracting Central Site Model Localization and
    Logarithmic Entanglement Growth.” <i>Physical Review B</i>, vol. 96, no. 10, 104203,
    American Physical Society, 2017, doi:<a href="https://doi.org/10.1103/PhysRevB.96.104203">10.1103/PhysRevB.96.104203</a>.
  short: D. Hetterich, M. Serbyn, F. Domínguez, F. Pollmann, B. Trauzettel, Physical
    Review B 96 (2017).
date_created: 2018-12-11T11:48:09Z
date_published: 2017-09-13T00:00:00Z
date_updated: 2021-01-12T08:12:35Z
day: '13'
department:
- _id: MaSe
doi: 10.1103/PhysRevB.96.104203
intvolume: '        96'
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1701.02744
month: '09'
oa: 1
oa_version: Submitted Version
publication: Physical Review B
publication_identifier:
  issn:
  - '24699950'
publication_status: published
publisher: American Physical Society
publist_id: '6955'
quality_controlled: '1'
scopus_import: 1
status: public
title: Noninteracting central site model localization and logarithmic entanglement
  growth
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 96
year: '2017'
...
---
_id: '725'
abstract:
- lang: eng
  text: Individual computations and social interactions underlying collective behavior
    in groups of animals are of great ethological, behavioral, and theoretical interest.
    While complex individual behaviors have successfully been parsed into small dictionaries
    of stereotyped behavioral modes, studies of collective behavior largely ignored
    these findings; instead, their focus was on inferring single, mode-independent
    social interaction rules that reproduced macroscopic and often qualitative features
    of group behavior. Here, we bring these two approaches together to predict individual
    swimming patterns of adult zebrafish in a group. We show that fish alternate between
    an “active” mode, in which they are sensitive to the swimming patterns of conspecifics,
    and a “passive” mode, where they ignore them. Using a model that accounts for
    these two modes explicitly, we predict behaviors of individual fish with high
    accuracy, outperforming previous approaches that assumed a single continuous computation
    by individuals and simple metric or topological weighing of neighbors’ behavior.
    At the group level, switching between active and passive modes is uncorrelated
    among fish, but correlated directional swimming behavior still emerges. Our quantitative
    approach for studying complex, multi-modal individual behavior jointly with emergent
    group behavior is readily extensible to additional behavioral modes and their
    neural correlates as well as to other species.
author:
- first_name: Roy
  full_name: Harpaz, Roy
  last_name: Harpaz
- first_name: Gasper
  full_name: Tkacik, Gasper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkacik
  orcid: 0000-0002-6699-1455
- first_name: Elad
  full_name: Schneidman, Elad
  last_name: Schneidman
citation:
  ama: Harpaz R, Tkačik G, Schneidman E. Discrete modes of social information processing
    predict individual behavior of fish in a group. <i>PNAS</i>. 2017;114(38):10149-10154.
    doi:<a href="https://doi.org/10.1073/pnas.1703817114">10.1073/pnas.1703817114</a>
  apa: Harpaz, R., Tkačik, G., &#38; Schneidman, E. (2017). Discrete modes of social
    information processing predict individual behavior of fish in a group. <i>PNAS</i>.
    National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.1703817114">https://doi.org/10.1073/pnas.1703817114</a>
  chicago: Harpaz, Roy, Gašper Tkačik, and Elad Schneidman. “Discrete Modes of Social
    Information Processing Predict Individual Behavior of Fish in a Group.” <i>PNAS</i>.
    National Academy of Sciences, 2017. <a href="https://doi.org/10.1073/pnas.1703817114">https://doi.org/10.1073/pnas.1703817114</a>.
  ieee: R. Harpaz, G. Tkačik, and E. Schneidman, “Discrete modes of social information
    processing predict individual behavior of fish in a group,” <i>PNAS</i>, vol.
    114, no. 38. National Academy of Sciences, pp. 10149–10154, 2017.
  ista: Harpaz R, Tkačik G, Schneidman E. 2017. Discrete modes of social information
    processing predict individual behavior of fish in a group. PNAS. 114(38), 10149–10154.
  mla: Harpaz, Roy, et al. “Discrete Modes of Social Information Processing Predict
    Individual Behavior of Fish in a Group.” <i>PNAS</i>, vol. 114, no. 38, National
    Academy of Sciences, 2017, pp. 10149–54, doi:<a href="https://doi.org/10.1073/pnas.1703817114">10.1073/pnas.1703817114</a>.
  short: R. Harpaz, G. Tkačik, E. Schneidman, PNAS 114 (2017) 10149–10154.
date_created: 2018-12-11T11:48:10Z
date_published: 2017-09-19T00:00:00Z
date_updated: 2021-01-12T08:12:36Z
day: '19'
department:
- _id: GaTk
doi: 10.1073/pnas.1703817114
external_id:
  pmid:
  - '28874581'
intvolume: '       114'
issue: '38'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5617265/
month: '09'
oa: 1
oa_version: Submitted Version
page: 10149 - 10154
pmid: 1
publication: PNAS
publication_identifier:
  issn:
  - '00278424'
publication_status: published
publisher: National Academy of Sciences
publist_id: '6953'
quality_controlled: '1'
scopus_import: 1
status: public
title: Discrete modes of social information processing predict individual behavior
  of fish in a group
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 114
year: '2017'
...
---
_id: '726'
abstract:
- lang: eng
  text: The morphogenesis of branched organs remains a subject of abiding interest.
    Although much is known about the underlying signaling pathways, it remains unclear
    how macroscopic features of branched organs, including their size, network topology,
    and spatial patterning, are encoded. Here, we show that, in mouse mammary gland,
    kidney, and human prostate, these features can be explained quantitatively within
    a single unifying framework of branching and annihilating random walks. Based
    on quantitative analyses of large-scale organ reconstructions and proliferation
    kinetics measurements, we propose that morphogenesis follows from the proliferative
    activity of equipotent tips that stochastically branch and randomly explore their
    environment but compete neutrally for space, becoming proliferatively inactive
    when in proximity with neighboring ducts. These results show that complex branched
    epithelial structures develop as a self-organized process, reliant upon a strikingly
    simple but generic rule, without recourse to a rigid and deterministic sequence
    of genetically programmed events.
article_processing_charge: No
author:
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
- first_name: Colinda
  full_name: Scheele, Colinda
  last_name: Scheele
- first_name: Mohammad
  full_name: Moad, Mohammad
  last_name: Moad
- first_name: Nicholas
  full_name: Drogo, Nicholas
  last_name: Drogo
- first_name: Rakesh
  full_name: Heer, Rakesh
  last_name: Heer
- first_name: Rosemary
  full_name: Sampogna, Rosemary
  last_name: Sampogna
- first_name: Jacco
  full_name: Van Rheenen, Jacco
  last_name: Van Rheenen
- first_name: Benjamin
  full_name: Simons, Benjamin
  last_name: Simons
citation:
  ama: Hannezo EB, Scheele C, Moad M, et al. A unifying theory of branching morphogenesis.
    <i>Cell</i>. 2017;171(1):242-255. doi:<a href="https://doi.org/10.1016/j.cell.2017.08.026">10.1016/j.cell.2017.08.026</a>
  apa: Hannezo, E. B., Scheele, C., Moad, M., Drogo, N., Heer, R., Sampogna, R., …
    Simons, B. (2017). A unifying theory of branching morphogenesis. <i>Cell</i>.
    Cell Press. <a href="https://doi.org/10.1016/j.cell.2017.08.026">https://doi.org/10.1016/j.cell.2017.08.026</a>
  chicago: Hannezo, Edouard B, Colinda Scheele, Mohammad Moad, Nicholas Drogo, Rakesh
    Heer, Rosemary Sampogna, Jacco Van Rheenen, and Benjamin Simons. “A Unifying Theory
    of Branching Morphogenesis.” <i>Cell</i>. Cell Press, 2017. <a href="https://doi.org/10.1016/j.cell.2017.08.026">https://doi.org/10.1016/j.cell.2017.08.026</a>.
  ieee: E. B. Hannezo <i>et al.</i>, “A unifying theory of branching morphogenesis,”
    <i>Cell</i>, vol. 171, no. 1. Cell Press, pp. 242–255, 2017.
  ista: Hannezo EB, Scheele C, Moad M, Drogo N, Heer R, Sampogna R, Van Rheenen J,
    Simons B. 2017. A unifying theory of branching morphogenesis. Cell. 171(1), 242–255.
  mla: Hannezo, Edouard B., et al. “A Unifying Theory of Branching Morphogenesis.”
    <i>Cell</i>, vol. 171, no. 1, Cell Press, 2017, pp. 242–55, doi:<a href="https://doi.org/10.1016/j.cell.2017.08.026">10.1016/j.cell.2017.08.026</a>.
  short: E.B. Hannezo, C. Scheele, M. Moad, N. Drogo, R. Heer, R. Sampogna, J. Van
    Rheenen, B. Simons, Cell 171 (2017) 242–255.
date_created: 2018-12-11T11:48:10Z
date_published: 2017-09-21T00:00:00Z
date_updated: 2023-09-28T11:34:17Z
day: '21'
ddc:
- '539'
department:
- _id: EdHa
doi: 10.1016/j.cell.2017.08.026
external_id:
  isi:
  - '000411331800024'
file:
- access_level: open_access
  checksum: 7a036d93a9e2e597af9bb504d6133aca
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:11:17Z
  date_updated: 2020-07-14T12:47:55Z
  file_id: '4870'
  file_name: IST-2017-883-v1+1_PIIS0092867417309510.pdf
  file_size: 12670204
  relation: main_file
file_date_updated: 2020-07-14T12:47:55Z
has_accepted_license: '1'
intvolume: '       171'
isi: 1
issue: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 242 - 255
publication: Cell
publication_identifier:
  issn:
  - '00928674'
publication_status: published
publisher: Cell Press
publist_id: '6952'
pubrep_id: '883'
quality_controlled: '1'
scopus_import: '1'
status: public
title: A unifying theory of branching morphogenesis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 171
year: '2017'
...
---
_id: '7289'
abstract:
- lang: eng
  text: Aprotic sodium–O2 batteries require the reversible formation/dissolution of
    sodium superoxide (NaO2) on cycling. Poor cycle life has been associated with
    parasitic chemistry caused by the reactivity of electrolyte and electrode with
    NaO2, a strong nucleophile and base. Its reactivity can, however, not consistently
    explain the side reactions and irreversibility. Herein we show that singlet oxygen
    (1O2) forms at all stages of cycling and that it is a main driver for parasitic
    chemistry. It was detected in‐ and ex‐situ via a 1O2 trap that selectively and
    rapidly forms a stable adduct with 1O2. The 1O2 formation mechanism involves proton‐mediated
    superoxide disproportionation on discharge, rest, and charge below ca. 3.3 V,
    and direct electrochemical 1O2 evolution above ca. 3.3 V. Trace water, which is
    needed for high capacities also drives parasitic chemistry. Controlling the highly
    reactive singlet oxygen is thus crucial for achieving highly reversible cell operation.
article_processing_charge: No
article_type: original
author:
- first_name: Lukas
  full_name: Schafzahl, Lukas
  last_name: Schafzahl
- first_name: Nika
  full_name: Mahne, Nika
  last_name: Mahne
- first_name: Bettina
  full_name: Schafzahl, Bettina
  last_name: Schafzahl
- first_name: Martin
  full_name: Wilkening, Martin
  last_name: Wilkening
- first_name: Christian
  full_name: Slugovc, Christian
  last_name: Slugovc
- first_name: Sergey M.
  full_name: Borisov, Sergey M.
  last_name: Borisov
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
citation:
  ama: Schafzahl L, Mahne N, Schafzahl B, et al. Singlet oxygen during cycling of
    the aprotic sodium-O2 battery. <i>Angewandte Chemie International Edition</i>.
    2017;56(49):15728-15732. doi:<a href="https://doi.org/10.1002/anie.201709351">10.1002/anie.201709351</a>
  apa: Schafzahl, L., Mahne, N., Schafzahl, B., Wilkening, M., Slugovc, C., Borisov,
    S. M., &#38; Freunberger, S. A. (2017). Singlet oxygen during cycling of the aprotic
    sodium-O2 battery. <i>Angewandte Chemie International Edition</i>. Wiley. <a href="https://doi.org/10.1002/anie.201709351">https://doi.org/10.1002/anie.201709351</a>
  chicago: Schafzahl, Lukas, Nika Mahne, Bettina Schafzahl, Martin Wilkening, Christian
    Slugovc, Sergey M. Borisov, and Stefan Alexander Freunberger. “Singlet Oxygen
    during Cycling of the Aprotic Sodium-O2 Battery.” <i>Angewandte Chemie International
    Edition</i>. Wiley, 2017. <a href="https://doi.org/10.1002/anie.201709351">https://doi.org/10.1002/anie.201709351</a>.
  ieee: L. Schafzahl <i>et al.</i>, “Singlet oxygen during cycling of the aprotic
    sodium-O2 battery,” <i>Angewandte Chemie International Edition</i>, vol. 56, no.
    49. Wiley, pp. 15728–15732, 2017.
  ista: Schafzahl L, Mahne N, Schafzahl B, Wilkening M, Slugovc C, Borisov SM, Freunberger
    SA. 2017. Singlet oxygen during cycling of the aprotic sodium-O2 battery. Angewandte
    Chemie International Edition. 56(49), 15728–15732.
  mla: Schafzahl, Lukas, et al. “Singlet Oxygen during Cycling of the Aprotic Sodium-O2
    Battery.” <i>Angewandte Chemie International Edition</i>, vol. 56, no. 49, Wiley,
    2017, pp. 15728–32, doi:<a href="https://doi.org/10.1002/anie.201709351">10.1002/anie.201709351</a>.
  short: L. Schafzahl, N. Mahne, B. Schafzahl, M. Wilkening, C. Slugovc, S.M. Borisov,
    S.A. Freunberger, Angewandte Chemie International Edition 56 (2017) 15728–15732.
date_created: 2020-01-15T12:15:05Z
date_published: 2017-12-04T00:00:00Z
date_updated: 2021-01-12T08:12:47Z
day: '04'
ddc:
- '540'
doi: 10.1002/anie.201709351
extern: '1'
file:
- access_level: open_access
  checksum: 3c5b1e51954554dffb13c7d58f69836c
  content_type: application/pdf
  creator: dernst
  date_created: 2020-01-26T14:58:07Z
  date_updated: 2020-07-14T12:47:55Z
  file_id: '7362'
  file_name: 2017_AngChemieInternat_Schafzahl.pdf
  file_size: 1013492
  relation: main_file
file_date_updated: 2020-07-14T12:47:55Z
has_accepted_license: '1'
intvolume: '        56'
issue: '49'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '12'
oa: 1
oa_version: Published Version
page: 15728-15732
publication: Angewandte Chemie International Edition
publication_identifier:
  issn:
  - 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Singlet oxygen during cycling of the aprotic sodium-O2 battery
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 56
year: '2017'
...
---
_id: '7290'
abstract:
- lang: eng
  text: 'We report a family of Pt and Pd benzoporphyrin dyes with versatile photophysical
    properties and easy access from cheap and abundant chemicals. Attaching 4 or 8
    alkylsulfone groups onto a meso-tetraphenyltetrabenzoporphyrin (TPTBP) macrocylcle
    renders the dyes highly soluble in organic solvents, photostable, and electron-deficient
    with the redox potential raised up to 0.65 V versus the parent porphyrin. The
    new dyes intensively absorb in the blue (Soret band, 440–480 nm) and in the red
    (Q-band, 620–650 nm) parts of the electromagnetic spectrum and show bright phosphorescence
    at room-temperature in the NIR with quantum yields up to 30% in solution. The
    small singlet–triplet energy gap yields unusually efficient thermally activated
    delayed fluorescence (TADF) at elevated temperatures in solution and in polymeric
    matrices with quantum yields as high as 27% at 120 °C, which is remarkable for
    benzoporphyrins. Apart from oxygen sensing, these properties enable unprecedented
    simultaneous, self-referenced oxygen and temperature sensing with a single indicator
    dye: whereas oxygen can be determined either via the decay time of phosphorescence
    or TADF, the temperature is accessed via the ratio of the two emissions. Moreover,
    the dyes are efficient sensitizers for triplet–triplet annihilation (TTA)-based
    upconversion making possible longer sensitization wavelength than the conventional
    benzoporphyrin complexes. The Pt-octa-sulfone dye also features interesting semireversible
    transformation in basic media, which generates new NIR absorbing species.'
article_processing_charge: No
article_type: original
author:
- first_name: Peter W.
  full_name: Zach, Peter W.
  last_name: Zach
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Ingo
  full_name: Klimant, Ingo
  last_name: Klimant
- first_name: Sergey M.
  full_name: Borisov, Sergey M.
  last_name: Borisov
citation:
  ama: 'Zach PW, Freunberger SA, Klimant I, Borisov SM. Electron-deficient near-infrared
    Pt(II) and Pd(II) benzoporphyrins with dual phosphorescence and unusually efficient
    thermally activated delayed fluorescence: First demonstration of simultaneous
    oxygen and temperature sensing with a single emitter. <i>ACS Applied Materials
    &#38; Interfaces</i>. 2017;9(43):38008-38023. doi:<a href="https://doi.org/10.1021/acsami.7b10669">10.1021/acsami.7b10669</a>'
  apa: 'Zach, P. W., Freunberger, S. A., Klimant, I., &#38; Borisov, S. M. (2017).
    Electron-deficient near-infrared Pt(II) and Pd(II) benzoporphyrins with dual phosphorescence
    and unusually efficient thermally activated delayed fluorescence: First demonstration
    of simultaneous oxygen and temperature sensing with a single emitter. <i>ACS Applied
    Materials &#38; Interfaces</i>. ACS. <a href="https://doi.org/10.1021/acsami.7b10669">https://doi.org/10.1021/acsami.7b10669</a>'
  chicago: 'Zach, Peter W., Stefan Alexander Freunberger, Ingo Klimant, and Sergey
    M. Borisov. “Electron-Deficient near-Infrared Pt(II) and Pd(II) Benzoporphyrins
    with Dual Phosphorescence and Unusually Efficient Thermally Activated Delayed
    Fluorescence: First Demonstration of Simultaneous Oxygen and Temperature Sensing
    with a Single Emitter.” <i>ACS Applied Materials &#38; Interfaces</i>. ACS, 2017.
    <a href="https://doi.org/10.1021/acsami.7b10669">https://doi.org/10.1021/acsami.7b10669</a>.'
  ieee: 'P. W. Zach, S. A. Freunberger, I. Klimant, and S. M. Borisov, “Electron-deficient
    near-infrared Pt(II) and Pd(II) benzoporphyrins with dual phosphorescence and
    unusually efficient thermally activated delayed fluorescence: First demonstration
    of simultaneous oxygen and temperature sensing with a single emitter,” <i>ACS
    Applied Materials &#38; Interfaces</i>, vol. 9, no. 43. ACS, pp. 38008–38023,
    2017.'
  ista: 'Zach PW, Freunberger SA, Klimant I, Borisov SM. 2017. Electron-deficient
    near-infrared Pt(II) and Pd(II) benzoporphyrins with dual phosphorescence and
    unusually efficient thermally activated delayed fluorescence: First demonstration
    of simultaneous oxygen and temperature sensing with a single emitter. ACS Applied
    Materials &#38; Interfaces. 9(43), 38008–38023.'
  mla: 'Zach, Peter W., et al. “Electron-Deficient near-Infrared Pt(II) and Pd(II)
    Benzoporphyrins with Dual Phosphorescence and Unusually Efficient Thermally Activated
    Delayed Fluorescence: First Demonstration of Simultaneous Oxygen and Temperature
    Sensing with a Single Emitter.” <i>ACS Applied Materials &#38; Interfaces</i>,
    vol. 9, no. 43, ACS, 2017, pp. 38008–23, doi:<a href="https://doi.org/10.1021/acsami.7b10669">10.1021/acsami.7b10669</a>.'
  short: P.W. Zach, S.A. Freunberger, I. Klimant, S.M. Borisov, ACS Applied Materials
    &#38; Interfaces 9 (2017) 38008–38023.
date_created: 2020-01-15T12:15:16Z
date_published: 2017-10-10T00:00:00Z
date_updated: 2021-01-12T08:12:48Z
day: '10'
ddc:
- '540'
- '543'
doi: 10.1021/acsami.7b10669
extern: '1'
file:
- access_level: open_access
  checksum: 0461c990eb910f19a70c6e5349ec35ed
  content_type: application/pdf
  creator: sfreunbe
  date_created: 2020-06-29T14:49:32Z
  date_updated: 2020-07-14T12:47:55Z
  file_id: '8051'
  file_name: Paper_Manuscript_submitted.pdf
  file_size: 2072792
  relation: main_file
file_date_updated: 2020-07-14T12:47:55Z
has_accepted_license: '1'
intvolume: '         9'
issue: '43'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Submitted Version
page: 38008-38023
publication: ACS Applied Materials & Interfaces
publication_identifier:
  eissn:
  - 1944-8252
  issn:
  - 1944-8244
publication_status: published
publisher: ACS
quality_controlled: '1'
status: public
title: 'Electron-deficient near-infrared Pt(II) and Pd(II) benzoporphyrins with dual
  phosphorescence and unusually efficient thermally activated delayed fluorescence:
  First demonstration of simultaneous oxygen and temperature sensing with a single
  emitter'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2017'
...
---
_id: '7292'
abstract:
- lang: eng
  text: 'Rechargeable Li–O2 batteries have amongst the highest formal energy and could
    store significantly more energy than other rechargeable batteries in practice
    if at least a large part of their promise could be realized. Realization, however,
    still faces many challenges than can only be overcome by fundamental understanding
    of the processes taking place. Here, we review recent advances in understanding
    the chemistry of the Li–O2 cathode and provide a perspective on dominant research
    needs. We put particular emphasis on issues that are often grossly misunderstood:
    realistic performance metrics and their reporting as well as identifying reversibility
    and quantitative measures to do so. Parasitic reactions are the prime obstacle
    for reversible cell operation and have recently been identified to be predominantly
    caused by singlet oxygen and not by reduced oxygen species as thought before.
    We discuss the far reaching implications of this finding on electrolyte and cathode
    stability, electrocatalysis, and future research needs.'
article_processing_charge: No
article_type: original
author:
- first_name: Nika
  full_name: Mahne, Nika
  last_name: Mahne
- first_name: Olivier
  full_name: Fontaine, Olivier
  last_name: Fontaine
- first_name: Musthafa Ottakam
  full_name: Thotiyl, Musthafa Ottakam
  last_name: Thotiyl
- first_name: Martin
  full_name: Wilkening, Martin
  last_name: Wilkening
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
citation:
  ama: Mahne N, Fontaine O, Thotiyl MO, Wilkening M, Freunberger SA. Mechanism and
    performance of lithium–oxygen batteries – a perspective. <i>Chemical Science</i>.
    2017;8(10):6716-6729. doi:<a href="https://doi.org/10.1039/c7sc02519j">10.1039/c7sc02519j</a>
  apa: Mahne, N., Fontaine, O., Thotiyl, M. O., Wilkening, M., &#38; Freunberger,
    S. A. (2017). Mechanism and performance of lithium–oxygen batteries – a perspective.
    <i>Chemical Science</i>. RSC. <a href="https://doi.org/10.1039/c7sc02519j">https://doi.org/10.1039/c7sc02519j</a>
  chicago: Mahne, Nika, Olivier Fontaine, Musthafa Ottakam Thotiyl, Martin Wilkening,
    and Stefan Alexander Freunberger. “Mechanism and Performance of Lithium–Oxygen
    Batteries – a Perspective.” <i>Chemical Science</i>. RSC, 2017. <a href="https://doi.org/10.1039/c7sc02519j">https://doi.org/10.1039/c7sc02519j</a>.
  ieee: N. Mahne, O. Fontaine, M. O. Thotiyl, M. Wilkening, and S. A. Freunberger,
    “Mechanism and performance of lithium–oxygen batteries – a perspective,” <i>Chemical
    Science</i>, vol. 8, no. 10. RSC, pp. 6716–6729, 2017.
  ista: Mahne N, Fontaine O, Thotiyl MO, Wilkening M, Freunberger SA. 2017. Mechanism
    and performance of lithium–oxygen batteries – a perspective. Chemical Science.
    8(10), 6716–6729.
  mla: Mahne, Nika, et al. “Mechanism and Performance of Lithium–Oxygen Batteries
    – a Perspective.” <i>Chemical Science</i>, vol. 8, no. 10, RSC, 2017, pp. 6716–29,
    doi:<a href="https://doi.org/10.1039/c7sc02519j">10.1039/c7sc02519j</a>.
  short: N. Mahne, O. Fontaine, M.O. Thotiyl, M. Wilkening, S.A. Freunberger, Chemical
    Science 8 (2017) 6716–6729.
date_created: 2020-01-15T12:15:42Z
date_published: 2017-07-31T00:00:00Z
date_updated: 2021-01-12T08:12:49Z
day: '31'
ddc:
- '540'
doi: 10.1039/c7sc02519j
extern: '1'
file:
- access_level: open_access
  checksum: 70c7c2ce5430b6e8605ccbf0275f1e80
  content_type: application/pdf
  creator: dernst
  date_created: 2020-01-26T15:04:44Z
  date_updated: 2020-07-14T12:47:55Z
  file_id: '7363'
  file_name: 2017_ChemicalScience_Mahne.pdf
  file_size: 992106
  relation: main_file
file_date_updated: 2020-07-14T12:47:55Z
has_accepted_license: '1'
intvolume: '         8'
issue: '10'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 6716-6729
publication: Chemical Science
publication_identifier:
  eissn:
  - 2041-6539
  issn:
  - 2041-6520
publication_status: published
publisher: RSC
quality_controlled: '1'
status: public
title: Mechanism and performance of lithium–oxygen batteries – a perspective
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2017'
...
---
_id: '732'
abstract:
- lang: eng
  text: 'Background: Social insects form densely crowded societies in environments
    with high pathogen loads, but have evolved collective defences that mitigate the
    impact of disease. However, colony-founding queens lack this protection and suffer
    high rates of mortality. The impact of pathogens may be exacerbated in species
    where queens found colonies together, as healthy individuals may contract pathogens
    from infectious co-founders. Therefore, we tested whether ant queens avoid founding
    colonies with pathogen-exposed conspecifics and how they might limit disease transmission
    from infectious individuals. Results: Using Lasius Niger queens and a naturally
    infecting fungal pathogen Metarhizium brunneum, we observed that queens were equally
    likely to found colonies with another pathogen-exposed or sham-treated queen.
    However, when one queen died, the surviving individual performed biting, burial
    and removal of the corpse. These undertaking behaviours were performed prophylactically,
    i.e. targeted equally towards non-infected and infected corpses, as well as carried
    out before infected corpses became infectious. Biting and burial reduced the risk
    of the queens contracting and dying from disease from an infectious corpse of
    a dead co-foundress. Conclusions: We show that co-founding ant queens express
    undertaking behaviours that, in mature colonies, are performed exclusively by
    workers. Such infection avoidance behaviours act before the queens can contract
    the disease and will therefore improve the overall chance of colony founding success
    in ant queens.'
article_number: '219'
article_processing_charge: Yes
article_type: original
author:
- first_name: Christopher
  full_name: Pull, Christopher
  id: 3C7F4840-F248-11E8-B48F-1D18A9856A87
  last_name: Pull
  orcid: 0000-0003-1122-3982
- first_name: Sylvia
  full_name: Cremer, Sylvia
  id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
  last_name: Cremer
  orcid: 0000-0002-2193-3868
citation:
  ama: Pull C, Cremer S. Co-founding ant queens prevent disease by performing prophylactic
    undertaking behaviour. <i>BMC Evolutionary Biology</i>. 2017;17(1). doi:<a href="https://doi.org/10.1186/s12862-017-1062-4">10.1186/s12862-017-1062-4</a>
  apa: Pull, C., &#38; Cremer, S. (2017). Co-founding ant queens prevent disease by
    performing prophylactic undertaking behaviour. <i>BMC Evolutionary Biology</i>.
    BioMed Central. <a href="https://doi.org/10.1186/s12862-017-1062-4">https://doi.org/10.1186/s12862-017-1062-4</a>
  chicago: Pull, Christopher, and Sylvia Cremer. “Co-Founding Ant Queens Prevent Disease
    by Performing Prophylactic Undertaking Behaviour.” <i>BMC Evolutionary Biology</i>.
    BioMed Central, 2017. <a href="https://doi.org/10.1186/s12862-017-1062-4">https://doi.org/10.1186/s12862-017-1062-4</a>.
  ieee: C. Pull and S. Cremer, “Co-founding ant queens prevent disease by performing
    prophylactic undertaking behaviour,” <i>BMC Evolutionary Biology</i>, vol. 17,
    no. 1. BioMed Central, 2017.
  ista: Pull C, Cremer S. 2017. Co-founding ant queens prevent disease by performing
    prophylactic undertaking behaviour. BMC Evolutionary Biology. 17(1), 219.
  mla: Pull, Christopher, and Sylvia Cremer. “Co-Founding Ant Queens Prevent Disease
    by Performing Prophylactic Undertaking Behaviour.” <i>BMC Evolutionary Biology</i>,
    vol. 17, no. 1, 219, BioMed Central, 2017, doi:<a href="https://doi.org/10.1186/s12862-017-1062-4">10.1186/s12862-017-1062-4</a>.
  short: C. Pull, S. Cremer, BMC Evolutionary Biology 17 (2017).
date_created: 2018-12-11T11:48:12Z
date_published: 2017-10-13T00:00:00Z
date_updated: 2023-09-28T11:31:32Z
day: '13'
ddc:
- '576'
- '592'
department:
- _id: SyCr
doi: 10.1186/s12862-017-1062-4
ec_funded: 1
external_id:
  isi:
  - '000412816800001'
file:
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  file_name: IST-2017-882-v1+1_12862_2017_Article_1062.pdf
  file_size: 949857
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file_date_updated: 2020-07-14T12:47:55Z
has_accepted_license: '1'
intvolume: '        17'
isi: 1
issue: '1'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 25DC711C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '243071'
  name: 'Social Vaccination in Ant Colonies: from Individual Mechanisms to Society
    Effects'
publication: BMC Evolutionary Biology
publication_identifier:
  issn:
  - '14712148'
publication_status: published
publisher: BioMed Central
publist_id: '6937'
pubrep_id: '882'
quality_controlled: '1'
related_material:
  record:
  - id: '819'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Co-founding ant queens prevent disease by performing prophylactic undertaking
  behaviour
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 17
year: '2017'
...
---
_id: '733'
abstract:
- lang: eng
  text: Let A and B be two N by N deterministic Hermitian matrices and let U be an
    N by N Haar distributed unitary matrix. It is well known that the spectral distribution
    of the sum H = A + UBU∗ converges weakly to the free additive convolution of the
    spectral distributions of A and B, as N tends to infinity. We establish the optimal
    convergence rate in the bulk of the spectrum.
acknowledgement: Partially supported by ERC Advanced Grant RANMAT No. 338804, Hong
  Kong RGC grant ECS 26301517, and the Göran Gustafsson Foundation
article_processing_charge: No
author:
- first_name: Zhigang
  full_name: Bao, Zhigang
  id: 442E6A6C-F248-11E8-B48F-1D18A9856A87
  last_name: Bao
  orcid: 0000-0003-3036-1475
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Kevin
  full_name: Schnelli, Kevin
  id: 434AD0AE-F248-11E8-B48F-1D18A9856A87
  last_name: Schnelli
  orcid: 0000-0003-0954-3231
citation:
  ama: Bao Z, Erdös L, Schnelli K. Convergence rate for spectral distribution of addition
    of random matrices. <i>Advances in Mathematics</i>. 2017;319:251-291. doi:<a href="https://doi.org/10.1016/j.aim.2017.08.028">10.1016/j.aim.2017.08.028</a>
  apa: Bao, Z., Erdös, L., &#38; Schnelli, K. (2017). Convergence rate for spectral
    distribution of addition of random matrices. <i>Advances in Mathematics</i>. Academic
    Press. <a href="https://doi.org/10.1016/j.aim.2017.08.028">https://doi.org/10.1016/j.aim.2017.08.028</a>
  chicago: Bao, Zhigang, László Erdös, and Kevin Schnelli. “Convergence Rate for Spectral
    Distribution of Addition of Random Matrices.” <i>Advances in Mathematics</i>.
    Academic Press, 2017. <a href="https://doi.org/10.1016/j.aim.2017.08.028">https://doi.org/10.1016/j.aim.2017.08.028</a>.
  ieee: Z. Bao, L. Erdös, and K. Schnelli, “Convergence rate for spectral distribution
    of addition of random matrices,” <i>Advances in Mathematics</i>, vol. 319. Academic
    Press, pp. 251–291, 2017.
  ista: Bao Z, Erdös L, Schnelli K. 2017. Convergence rate for spectral distribution
    of addition of random matrices. Advances in Mathematics. 319, 251–291.
  mla: Bao, Zhigang, et al. “Convergence Rate for Spectral Distribution of Addition
    of Random Matrices.” <i>Advances in Mathematics</i>, vol. 319, Academic Press,
    2017, pp. 251–91, doi:<a href="https://doi.org/10.1016/j.aim.2017.08.028">10.1016/j.aim.2017.08.028</a>.
  short: Z. Bao, L. Erdös, K. Schnelli, Advances in Mathematics 319 (2017) 251–291.
date_created: 2018-12-11T11:48:13Z
date_published: 2017-10-15T00:00:00Z
date_updated: 2023-09-28T11:30:42Z
day: '15'
department:
- _id: LaEr
doi: 10.1016/j.aim.2017.08.028
ec_funded: 1
external_id:
  isi:
  - '000412150400010'
intvolume: '       319'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1606.03076
month: '10'
oa: 1
oa_version: Submitted Version
page: 251 - 291
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
publication: Advances in Mathematics
publication_status: published
publisher: Academic Press
publist_id: '6935'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Convergence rate for spectral distribution of addition of random matrices
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 319
year: '2017'
...
---
_id: '734'
abstract:
- lang: eng
  text: 'Social insect societies are long-standing models for understanding social
    behaviour and evolution. Unlike other advanced biological societies (such as the
    multicellular body), the component parts of social insect societies can be easily
    deconstructed and manipulated. Recent methodological and theoretical innovations
    have exploited this trait to address an expanded range of biological questions.
    We illustrate the broadening range of biological insight coming from social insect
    biology with four examples. These new frontiers promote open-minded, interdisciplinary
    exploration of one of the richest and most complex of biological phenomena: sociality.'
article_processing_charge: No
article_type: original
author:
- first_name: Patrick
  full_name: Kennedy, Patrick
  last_name: Kennedy
- first_name: Gemma
  full_name: Baron, Gemma
  last_name: Baron
- first_name: Bitao
  full_name: Qiu, Bitao
  last_name: Qiu
- first_name: Dalial
  full_name: Freitak, Dalial
  last_name: Freitak
- first_name: Heikki
  full_name: Helantera, Heikki
  last_name: Helantera
- first_name: Edmund
  full_name: Hunt, Edmund
  last_name: Hunt
- first_name: Fabio
  full_name: Manfredini, Fabio
  last_name: Manfredini
- first_name: Thomas
  full_name: O'Shea Wheller, Thomas
  last_name: O'Shea Wheller
- first_name: Solenn
  full_name: Patalano, Solenn
  last_name: Patalano
- first_name: Christopher
  full_name: Pull, Christopher
  id: 3C7F4840-F248-11E8-B48F-1D18A9856A87
  last_name: Pull
  orcid: 0000-0003-1122-3982
- first_name: Takao
  full_name: Sasaki, Takao
  last_name: Sasaki
- first_name: Daisy
  full_name: Taylor, Daisy
  last_name: Taylor
- first_name: Christopher
  full_name: Wyatt, Christopher
  last_name: Wyatt
- first_name: Seirian
  full_name: Sumner, Seirian
  last_name: Sumner
citation:
  ama: Kennedy P, Baron G, Qiu B, et al. Deconstructing superorganisms and societies
    to address big questions in biology. <i>Trends in Ecology and Evolution</i>. 2017;32(11):861-872.
    doi:<a href="https://doi.org/10.1016/j.tree.2017.08.004">10.1016/j.tree.2017.08.004</a>
  apa: Kennedy, P., Baron, G., Qiu, B., Freitak, D., Helantera, H., Hunt, E., … Sumner,
    S. (2017). Deconstructing superorganisms and societies to address big questions
    in biology. <i>Trends in Ecology and Evolution</i>. Cell Press. <a href="https://doi.org/10.1016/j.tree.2017.08.004">https://doi.org/10.1016/j.tree.2017.08.004</a>
  chicago: Kennedy, Patrick, Gemma Baron, Bitao Qiu, Dalial Freitak, Heikki Helantera,
    Edmund Hunt, Fabio Manfredini, et al. “Deconstructing Superorganisms and Societies
    to Address Big Questions in Biology.” <i>Trends in Ecology and Evolution</i>.
    Cell Press, 2017. <a href="https://doi.org/10.1016/j.tree.2017.08.004">https://doi.org/10.1016/j.tree.2017.08.004</a>.
  ieee: P. Kennedy <i>et al.</i>, “Deconstructing superorganisms and societies to
    address big questions in biology,” <i>Trends in Ecology and Evolution</i>, vol.
    32, no. 11. Cell Press, pp. 861–872, 2017.
  ista: Kennedy P, Baron G, Qiu B, Freitak D, Helantera H, Hunt E, Manfredini F, O’Shea
    Wheller T, Patalano S, Pull C, Sasaki T, Taylor D, Wyatt C, Sumner S. 2017. Deconstructing
    superorganisms and societies to address big questions in biology. Trends in Ecology
    and Evolution. 32(11), 861–872.
  mla: Kennedy, Patrick, et al. “Deconstructing Superorganisms and Societies to Address
    Big Questions in Biology.” <i>Trends in Ecology and Evolution</i>, vol. 32, no.
    11, Cell Press, 2017, pp. 861–72, doi:<a href="https://doi.org/10.1016/j.tree.2017.08.004">10.1016/j.tree.2017.08.004</a>.
  short: P. Kennedy, G. Baron, B. Qiu, D. Freitak, H. Helantera, E. Hunt, F. Manfredini,
    T. O’Shea Wheller, S. Patalano, C. Pull, T. Sasaki, D. Taylor, C. Wyatt, S. Sumner,
    Trends in Ecology and Evolution 32 (2017) 861–872.
date_created: 2018-12-11T11:48:13Z
date_published: 2017-11-01T00:00:00Z
date_updated: 2023-09-27T14:15:15Z
day: '01'
ddc:
- '570'
department:
- _id: SyCr
doi: 10.1016/j.tree.2017.08.004
external_id:
  isi:
  - '000413231900011'
file:
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  checksum: c8f49309ed9436201814fa7153d66a99
  content_type: application/pdf
  creator: dernst
  date_created: 2020-05-14T16:22:27Z
  date_updated: 2020-07-14T12:47:56Z
  file_id: '7842'
  file_name: 2017_TrendsEcology_Kennedy.pdf
  file_size: 15018382
  relation: main_file
file_date_updated: 2020-07-14T12:47:56Z
has_accepted_license: '1'
intvolume: '        32'
isi: 1
issue: '11'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Submitted Version
page: 861 - 872
publication: Trends in Ecology and Evolution
publication_identifier:
  issn:
  - '01695347'
publication_status: published
publisher: Cell Press
publist_id: '6933'
quality_controlled: '1'
related_material:
  record:
  - id: '819'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Deconstructing superorganisms and societies to address big questions in biology
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 32
year: '2017'
...
---
_id: '736'
abstract:
- lang: eng
  text: The neurotransmitter receptor subtype, number, density, and distribution relative
    to the location of transmitter release sites are key determinants of signal transmission.
    AMPA-type ionotropic glutamate receptors (AMPARs) containing GluA3 and GluA4 subunits
    are prominently expressed in subsets of neurons capable of firing action potentials
    at high frequencies, such as auditory relay neurons. The auditory nerve (AN) forms
    glutamatergic synapses on two types of relay neurons, bushy cells (BCs) and fusiform
    cells (FCs) of the cochlear nucleus. AN-BC and AN-FC synapses have distinct kinetics;
    thus, we investigated whether the number, density, and localization of GluA3 and
    GluA4 subunits in these synapses are differentially organized using quantitative
    freeze-fracture replica immunogold labeling. We identify a positive correlation
    between the number of AMPARs and the size of AN-BC and AN-FC synapses. Both types
    of AN synapses have similar numbers of AMPARs; however, the AN-BC have a higher
    density of AMPARs than AN-FC synapses, because the AN-BC synapses are smaller.
    A higher number and density of GluA3 subunits are observed at AN-BC synapses,
    whereas a higher number and density of GluA4 subunits are observed at AN-FC synapses.
    The intrasynaptic distribution of immunogold labeling revealed that AMPAR subunits,
    particularly GluA3, are concentrated at the center of the AN-BC synapses. The
    central distribution of AMPARs is absent in GluA3-knockout mice, and gold particles
    are evenly distributed along the postsynaptic density. GluA4 gold labeling was
    homogenously distributed along both synapse types. Thus, GluA3 and GluA4 subunits
    are distributed at AN synapses in a target-cell-dependent manner.
article_processing_charge: No
author:
- first_name: María
  full_name: Rubio, María
  last_name: Rubio
- first_name: Ko
  full_name: Matsui, Ko
  last_name: Matsui
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Naomi
  full_name: Kamasawa, Naomi
  last_name: Kamasawa
- first_name: Harumi
  full_name: Harada, Harumi
  id: 2E55CDF2-F248-11E8-B48F-1D18A9856A87
  last_name: Harada
  orcid: 0000-0001-7429-7896
- first_name: Makoto
  full_name: Itakura, Makoto
  last_name: Itakura
- first_name: Elek
  full_name: Molnár, Elek
  last_name: Molnár
- first_name: Manabu
  full_name: Abe, Manabu
  last_name: Abe
- first_name: Kenji
  full_name: Sakimura, Kenji
  last_name: Sakimura
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: Rubio M, Matsui K, Fukazawa Y, et al. The number and distribution of AMPA receptor
    channels containing fast kinetic GluA3 and GluA4 subunits at auditory nerve synapses
    depend on the target cells. <i>Brain Structure and Function</i>. 2017;222(8):3375-3393.
    doi:<a href="https://doi.org/10.1007/s00429-017-1408-0">10.1007/s00429-017-1408-0</a>
  apa: Rubio, M., Matsui, K., Fukazawa, Y., Kamasawa, N., Harada, H., Itakura, M.,
    … Shigemoto, R. (2017). The number and distribution of AMPA receptor channels
    containing fast kinetic GluA3 and GluA4 subunits at auditory nerve synapses depend
    on the target cells. <i>Brain Structure and Function</i>. Springer. <a href="https://doi.org/10.1007/s00429-017-1408-0">https://doi.org/10.1007/s00429-017-1408-0</a>
  chicago: Rubio, María, Ko Matsui, Yugo Fukazawa, Naomi Kamasawa, Harumi Harada,
    Makoto Itakura, Elek Molnár, Manabu Abe, Kenji Sakimura, and Ryuichi Shigemoto.
    “The Number and Distribution of AMPA Receptor Channels Containing Fast Kinetic
    GluA3 and GluA4 Subunits at Auditory Nerve Synapses Depend on the Target Cells.”
    <i>Brain Structure and Function</i>. Springer, 2017. <a href="https://doi.org/10.1007/s00429-017-1408-0">https://doi.org/10.1007/s00429-017-1408-0</a>.
  ieee: M. Rubio <i>et al.</i>, “The number and distribution of AMPA receptor channels
    containing fast kinetic GluA3 and GluA4 subunits at auditory nerve synapses depend
    on the target cells,” <i>Brain Structure and Function</i>, vol. 222, no. 8. Springer,
    pp. 3375–3393, 2017.
  ista: Rubio M, Matsui K, Fukazawa Y, Kamasawa N, Harada H, Itakura M, Molnár E,
    Abe M, Sakimura K, Shigemoto R. 2017. The number and distribution of AMPA receptor
    channels containing fast kinetic GluA3 and GluA4 subunits at auditory nerve synapses
    depend on the target cells. Brain Structure and Function. 222(8), 3375–3393.
  mla: Rubio, María, et al. “The Number and Distribution of AMPA Receptor Channels
    Containing Fast Kinetic GluA3 and GluA4 Subunits at Auditory Nerve Synapses Depend
    on the Target Cells.” <i>Brain Structure and Function</i>, vol. 222, no. 8, Springer,
    2017, pp. 3375–93, doi:<a href="https://doi.org/10.1007/s00429-017-1408-0">10.1007/s00429-017-1408-0</a>.
  short: M. Rubio, K. Matsui, Y. Fukazawa, N. Kamasawa, H. Harada, M. Itakura, E.
    Molnár, M. Abe, K. Sakimura, R. Shigemoto, Brain Structure and Function 222 (2017)
    3375–3393.
date_created: 2018-12-11T11:48:14Z
date_published: 2017-11-01T00:00:00Z
date_updated: 2023-09-27T14:14:51Z
day: '01'
ddc:
- '571'
department:
- _id: RySh
doi: 10.1007/s00429-017-1408-0
external_id:
  isi:
  - '000414761700002'
file:
- access_level: open_access
  checksum: 73787a22507de8fb585bb598e1418ca7
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:10:20Z
  date_updated: 2020-07-14T12:47:56Z
  file_id: '4806'
  file_name: IST-2017-881-v1+1_s00429-017-1408-0.pdf
  file_size: 4011126
  relation: main_file
file_date_updated: 2020-07-14T12:47:56Z
has_accepted_license: '1'
intvolume: '       222'
isi: 1
issue: '8'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 3375 - 3393
publication: Brain Structure and Function
publication_identifier:
  issn:
  - '18632653'
publication_status: published
publisher: Springer
publist_id: '6932'
pubrep_id: '881'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The number and distribution of AMPA receptor channels containing fast kinetic
  GluA3 and GluA4 subunits at auditory nerve synapses depend on the target cells
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 222
year: '2017'
...
---
_id: '7360'
abstract:
- lang: eng
  text: Inflammation, which is a highly regulated host response against danger signals,
    may be harmful if it is excessive and deregulated. Ideally, anti-inflammatory
    therapy should autonomously commence as soon as possible after the onset of inflammation,
    should be controllable by a physician, and should not systemically block beneficial
    immune response in the long term. We describe a genetically encoded anti-inflammatory
    mammalian cell device based on a modular engineered genetic circuit comprising
    a sensor, an amplifier, a “thresholder” to restrict activation of a positive-feedback
    loop, a combination of advanced clinically used biopharmaceutical proteins, and
    orthogonal regulatory elements that linked modules into the functional device.
    This genetic circuit was autonomously activated by inflammatory signals, including
    endogenous cecal ligation and puncture (CLP)-induced inflammation in mice and
    serum from a systemic juvenile idiopathic arthritis (sIJA) patient, and could
    be reset externally by a chemical signal. The microencapsulated anti-inflammatory
    device significantly reduced the pathology in dextran sodium sulfate (DSS)-induced
    acute murine colitis, demonstrating a synthetic immunological approach for autonomous
    anti-inflammatory therapy.
article_processing_charge: No
article_type: original
author:
- first_name: Anže
  full_name: Smole, Anže
  last_name: Smole
- first_name: Duško
  full_name: Lainšček, Duško
  last_name: Lainšček
- first_name: Urban
  full_name: Bezeljak, Urban
  id: 2A58201A-F248-11E8-B48F-1D18A9856A87
  last_name: Bezeljak
  orcid: 0000-0003-1365-5631
- first_name: Simon
  full_name: Horvat, Simon
  last_name: Horvat
- first_name: Roman
  full_name: Jerala, Roman
  last_name: Jerala
citation:
  ama: Smole A, Lainšček D, Bezeljak U, Horvat S, Jerala R. A synthetic mammalian
    therapeutic gene circuit for sensing and suppressing inflammation. <i>Molecular
    Therapy</i>. 2017;25(1):102-119. doi:<a href="https://doi.org/10.1016/j.ymthe.2016.10.005">10.1016/j.ymthe.2016.10.005</a>
  apa: Smole, A., Lainšček, D., Bezeljak, U., Horvat, S., &#38; Jerala, R. (2017).
    A synthetic mammalian therapeutic gene circuit for sensing and suppressing inflammation.
    <i>Molecular Therapy</i>. Elsevier. <a href="https://doi.org/10.1016/j.ymthe.2016.10.005">https://doi.org/10.1016/j.ymthe.2016.10.005</a>
  chicago: Smole, Anže, Duško Lainšček, Urban Bezeljak, Simon Horvat, and Roman Jerala.
    “A Synthetic Mammalian Therapeutic Gene Circuit for Sensing and Suppressing Inflammation.”
    <i>Molecular Therapy</i>. Elsevier, 2017. <a href="https://doi.org/10.1016/j.ymthe.2016.10.005">https://doi.org/10.1016/j.ymthe.2016.10.005</a>.
  ieee: A. Smole, D. Lainšček, U. Bezeljak, S. Horvat, and R. Jerala, “A synthetic
    mammalian therapeutic gene circuit for sensing and suppressing inflammation,”
    <i>Molecular Therapy</i>, vol. 25, no. 1. Elsevier, pp. 102–119, 2017.
  ista: Smole A, Lainšček D, Bezeljak U, Horvat S, Jerala R. 2017. A synthetic mammalian
    therapeutic gene circuit for sensing and suppressing inflammation. Molecular Therapy.
    25(1), 102–119.
  mla: Smole, Anže, et al. “A Synthetic Mammalian Therapeutic Gene Circuit for Sensing
    and Suppressing Inflammation.” <i>Molecular Therapy</i>, vol. 25, no. 1, Elsevier,
    2017, pp. 102–19, doi:<a href="https://doi.org/10.1016/j.ymthe.2016.10.005">10.1016/j.ymthe.2016.10.005</a>.
  short: A. Smole, D. Lainšček, U. Bezeljak, S. Horvat, R. Jerala, Molecular Therapy
    25 (2017) 102–119.
date_created: 2020-01-25T15:55:39Z
date_published: 2017-01-01T00:00:00Z
date_updated: 2021-01-12T08:13:14Z
day: '01'
ddc:
- '570'
department:
- _id: MaLo
doi: 10.1016/j.ymthe.2016.10.005
external_id:
  pmid:
  - '28129106'
file:
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  checksum: ea8b1b28606dd1edab7379ba4fa3641f
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  file_id: '7561'
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oa_version: Published Version
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publication: Molecular Therapy
publication_identifier:
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  - 1525-0016
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publisher: Elsevier
quality_controlled: '1'
status: public
title: A synthetic mammalian therapeutic gene circuit for sensing and suppressing
  inflammation
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  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2017'
...
---
_id: '739'
abstract:
- lang: eng
  text: We study the norm approximation to the Schrödinger dynamics of N bosons in
    with an interaction potential of the form . Assuming that in the initial state
    the particles outside of the condensate form a quasi-free state with finite kinetic
    energy, we show that in the large N limit, the fluctuations around the condensate
    can be effectively described using Bogoliubov approximation for all . The range
    of β is expected to be optimal for this large class of initial states.
article_processing_charge: No
author:
- first_name: Phan
  full_name: Nam, Phan
  id: 404092F4-F248-11E8-B48F-1D18A9856A87
  last_name: Nam
- first_name: Marcin M
  full_name: Napiórkowski, Marcin M
  id: 4197AD04-F248-11E8-B48F-1D18A9856A87
  last_name: Napiórkowski
citation:
  ama: Nam P, Napiórkowski MM. A note on the validity of Bogoliubov correction to
    mean field dynamics. <i>Journal de Mathématiques Pures et Appliquées</i>. 2017;108(5):662-688.
    doi:<a href="https://doi.org/10.1016/j.matpur.2017.05.013">10.1016/j.matpur.2017.05.013</a>
  apa: Nam, P., &#38; Napiórkowski, M. M. (2017). A note on the validity of Bogoliubov
    correction to mean field dynamics. <i>Journal de Mathématiques Pures et Appliquées</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.matpur.2017.05.013">https://doi.org/10.1016/j.matpur.2017.05.013</a>
  chicago: Nam, Phan, and Marcin M Napiórkowski. “A Note on the Validity of Bogoliubov
    Correction to Mean Field Dynamics.” <i>Journal de Mathématiques Pures et Appliquées</i>.
    Elsevier, 2017. <a href="https://doi.org/10.1016/j.matpur.2017.05.013">https://doi.org/10.1016/j.matpur.2017.05.013</a>.
  ieee: P. Nam and M. M. Napiórkowski, “A note on the validity of Bogoliubov correction
    to mean field dynamics,” <i>Journal de Mathématiques Pures et Appliquées</i>,
    vol. 108, no. 5. Elsevier, pp. 662–688, 2017.
  ista: Nam P, Napiórkowski MM. 2017. A note on the validity of Bogoliubov correction
    to mean field dynamics. Journal de Mathématiques Pures et Appliquées. 108(5),
    662–688.
  mla: Nam, Phan, and Marcin M. Napiórkowski. “A Note on the Validity of Bogoliubov
    Correction to Mean Field Dynamics.” <i>Journal de Mathématiques Pures et Appliquées</i>,
    vol. 108, no. 5, Elsevier, 2017, pp. 662–88, doi:<a href="https://doi.org/10.1016/j.matpur.2017.05.013">10.1016/j.matpur.2017.05.013</a>.
  short: P. Nam, M.M. Napiórkowski, Journal de Mathématiques Pures et Appliquées 108
    (2017) 662–688.
date_created: 2018-12-11T11:48:15Z
date_published: 2017-11-01T00:00:00Z
date_updated: 2023-09-27T12:52:07Z
day: '01'
department:
- _id: RoSe
doi: 10.1016/j.matpur.2017.05.013
external_id:
  isi:
  - '000414113600003'
intvolume: '       108'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1604.05240
month: '11'
oa: 1
oa_version: Submitted Version
page: 662 - 688
project:
- _id: 25C878CE-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P27533_N27
  name: Structure of the Excitation Spectrum for Many-Body Quantum Systems
publication: Journal de Mathématiques Pures et Appliquées
publication_identifier:
  issn:
  - '00217824'
publication_status: published
publisher: Elsevier
publist_id: '6928'
quality_controlled: '1'
scopus_import: '1'
status: public
title: A note on the validity of Bogoliubov correction to mean field dynamics
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 108
year: '2017'
...
---
_id: '740'
abstract:
- lang: eng
  text: 'Developments in bioengineering and molecular biology have introduced a palette
    of genetically encoded probes for identification of specific cell populations
    in electron microscopy. These probes can be targeted to distinct cellular compartments,
    rendering them electron dense through a subsequent chemical reaction. These electron
    densities strongly increase the local contrast in samples prepared for electron
    microscopy, allowing three major advances in ultrastructural mapping of circuits:
    genetic identification of circuit components, targeted imaging of regions of interest
    and automated analysis of the tagged circuits. Together, the gains from these
    advances can decrease the time required for the analysis of targeted circuit motifs
    by over two orders of magnitude. These genetic encoded tags for electron microscopy
    promise to simplify the analysis of circuit motifs and become a central tool for
    structure‐function studies of synaptic connections in the brain. We review the
    current state‐of‐the‐art with an emphasis on connectomics, the quantitative analysis
    of neuronal structures and motifs.'
article_number: e288
article_processing_charge: No
article_type: original
author:
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Maximilian A
  full_name: Jösch, Maximilian A
  id: 2BD278E6-F248-11E8-B48F-1D18A9856A87
  last_name: Jösch
  orcid: 0000-0002-3937-1330
citation:
  ama: Shigemoto R, Jösch MA. The genetic encoded toolbox for electron microscopy
    and connectomics. <i>WIREs Developmental Biology</i>. 2017;6(6). doi:<a href="https://doi.org/10.1002/wdev.288">10.1002/wdev.288</a>
  apa: Shigemoto, R., &#38; Jösch, M. A. (2017). The genetic encoded toolbox for electron
    microscopy and connectomics. <i>WIREs Developmental Biology</i>. Wiley-Blackwell.
    <a href="https://doi.org/10.1002/wdev.288">https://doi.org/10.1002/wdev.288</a>
  chicago: Shigemoto, Ryuichi, and Maximilian A Jösch. “The Genetic Encoded Toolbox
    for Electron Microscopy and Connectomics.” <i>WIREs Developmental Biology</i>.
    Wiley-Blackwell, 2017. <a href="https://doi.org/10.1002/wdev.288">https://doi.org/10.1002/wdev.288</a>.
  ieee: R. Shigemoto and M. A. Jösch, “The genetic encoded toolbox for electron microscopy
    and connectomics,” <i>WIREs Developmental Biology</i>, vol. 6, no. 6. Wiley-Blackwell,
    2017.
  ista: Shigemoto R, Jösch MA. 2017. The genetic encoded toolbox for electron microscopy
    and connectomics. WIREs Developmental Biology. 6(6), e288.
  mla: Shigemoto, Ryuichi, and Maximilian A. Jösch. “The Genetic Encoded Toolbox for
    Electron Microscopy and Connectomics.” <i>WIREs Developmental Biology</i>, vol.
    6, no. 6, e288, Wiley-Blackwell, 2017, doi:<a href="https://doi.org/10.1002/wdev.288">10.1002/wdev.288</a>.
  short: R. Shigemoto, M.A. Jösch, WIREs Developmental Biology 6 (2017).
date_created: 2018-12-11T11:48:15Z
date_published: 2017-08-11T00:00:00Z
date_updated: 2023-09-27T12:51:41Z
day: '11'
ddc:
- '570'
department:
- _id: RySh
- _id: MaJö
doi: 10.1002/wdev.288
external_id:
  isi:
  - '000412827400005'
  pmid:
  - '28800674'
file:
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  checksum: a9370f27b1591773b7a0de299bc81c8c
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  creator: dernst
  date_created: 2019-11-19T07:36:18Z
  date_updated: 2020-07-14T12:47:57Z
  file_id: '7045'
  file_name: 2017_WIREs_Shigemoto.pdf
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file_date_updated: 2020-07-14T12:47:57Z
has_accepted_license: '1'
intvolume: '         6'
isi: 1
issue: '6'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Submitted Version
pmid: 1
publication: WIREs Developmental Biology
publication_identifier:
  issn:
  - '17597684'
publication_status: published
publisher: Wiley-Blackwell
publist_id: '6927'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The genetic encoded toolbox for electron microscopy and connectomics
tmp:
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  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 6
year: '2017'
...
---
_id: '741'
abstract:
- lang: eng
  text: We prove that a system of N fermions interacting with an additional particle
    via point interactions is stable if the ratio of the mass of the additional particle
    to the one of the fermions is larger than some critical m*. The value of m* is
    independent of N and turns out to be less than 1. This fact has important implications
    for the stability of the unitary Fermi gas. We also characterize the domain of
    the Hamiltonian of this model, and establish the validity of the Tan relations
    for all wave functions in the domain.
article_processing_charge: No
author:
- first_name: Thomas
  full_name: Moser, Thomas
  id: 2B5FC9A4-F248-11E8-B48F-1D18A9856A87
  last_name: Moser
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Moser T, Seiringer R. Stability of a fermionic N+1 particle system with point
    interactions. <i>Communications in Mathematical Physics</i>. 2017;356(1):329-355.
    doi:<a href="https://doi.org/10.1007/s00220-017-2980-0">10.1007/s00220-017-2980-0</a>
  apa: Moser, T., &#38; Seiringer, R. (2017). Stability of a fermionic N+1 particle
    system with point interactions. <i>Communications in Mathematical Physics</i>.
    Springer. <a href="https://doi.org/10.1007/s00220-017-2980-0">https://doi.org/10.1007/s00220-017-2980-0</a>
  chicago: Moser, Thomas, and Robert Seiringer. “Stability of a Fermionic N+1 Particle
    System with Point Interactions.” <i>Communications in Mathematical Physics</i>.
    Springer, 2017. <a href="https://doi.org/10.1007/s00220-017-2980-0">https://doi.org/10.1007/s00220-017-2980-0</a>.
  ieee: T. Moser and R. Seiringer, “Stability of a fermionic N+1 particle system with
    point interactions,” <i>Communications in Mathematical Physics</i>, vol. 356,
    no. 1. Springer, pp. 329–355, 2017.
  ista: Moser T, Seiringer R. 2017. Stability of a fermionic N+1 particle system with
    point interactions. Communications in Mathematical Physics. 356(1), 329–355.
  mla: Moser, Thomas, and Robert Seiringer. “Stability of a Fermionic N+1 Particle
    System with Point Interactions.” <i>Communications in Mathematical Physics</i>,
    vol. 356, no. 1, Springer, 2017, pp. 329–55, doi:<a href="https://doi.org/10.1007/s00220-017-2980-0">10.1007/s00220-017-2980-0</a>.
  short: T. Moser, R. Seiringer, Communications in Mathematical Physics 356 (2017)
    329–355.
date_created: 2018-12-11T11:48:15Z
date_published: 2017-11-01T00:00:00Z
date_updated: 2023-09-27T12:34:15Z
day: '01'
ddc:
- '539'
department:
- _id: RoSe
doi: 10.1007/s00220-017-2980-0
ec_funded: 1
external_id:
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intvolume: '       356'
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language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 329 - 355
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
- _id: 25C878CE-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P27533_N27
  name: Structure of the Excitation Spectrum for Many-Body Quantum Systems
publication: Communications in Mathematical Physics
publication_identifier:
  issn:
  - '00103616'
publication_status: published
publisher: Springer
publist_id: '6926'
pubrep_id: '880'
quality_controlled: '1'
related_material:
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  - id: '52'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Stability of a fermionic N+1 particle system with point interactions
tmp:
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  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 356
year: '2017'
...
---
_id: '744'
abstract:
- lang: eng
  text: In evolutionary game theory interactions between individuals are often assumed
    obligatory. However, in many real-life situations, individuals can decide to opt
    out of an interaction depending on the information they have about the opponent.
    We consider a simple evolutionary game theoretic model to study such a scenario,
    where at each encounter between two individuals the type of the opponent (cooperator/defector)
    is known with some probability, and where each individual either accepts or opts
    out of the interaction. If the type of the opponent is unknown, a trustful individual
    accepts the interaction, whereas a suspicious individual opts out of the interaction.
    If either of the two individuals opt out both individuals remain without an interaction.
    We show that in the prisoners dilemma optional interactions along with suspicious
    behaviour facilitates the emergence of trustful cooperation.
article_processing_charge: No
article_type: original
author:
- first_name: Tadeas
  full_name: Priklopil, Tadeas
  id: 3C869AA0-F248-11E8-B48F-1D18A9856A87
  last_name: Priklopil
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Nowak, Martin
  last_name: Nowak
citation:
  ama: Priklopil T, Chatterjee K, Nowak M. Optional interactions and suspicious behaviour
    facilitates trustful cooperation in prisoners dilemma. <i> Journal of Theoretical
    Biology</i>. 2017;433:64-72. doi:<a href="https://doi.org/10.1016/j.jtbi.2017.08.025">10.1016/j.jtbi.2017.08.025</a>
  apa: Priklopil, T., Chatterjee, K., &#38; Nowak, M. (2017). Optional interactions
    and suspicious behaviour facilitates trustful cooperation in prisoners dilemma.
    <i> Journal of Theoretical Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.jtbi.2017.08.025">https://doi.org/10.1016/j.jtbi.2017.08.025</a>
  chicago: Priklopil, Tadeas, Krishnendu Chatterjee, and Martin Nowak. “Optional Interactions
    and Suspicious Behaviour Facilitates Trustful Cooperation in Prisoners Dilemma.”
    <i> Journal of Theoretical Biology</i>. Elsevier, 2017. <a href="https://doi.org/10.1016/j.jtbi.2017.08.025">https://doi.org/10.1016/j.jtbi.2017.08.025</a>.
  ieee: T. Priklopil, K. Chatterjee, and M. Nowak, “Optional interactions and suspicious
    behaviour facilitates trustful cooperation in prisoners dilemma,” <i> Journal
    of Theoretical Biology</i>, vol. 433. Elsevier, pp. 64–72, 2017.
  ista: Priklopil T, Chatterjee K, Nowak M. 2017. Optional interactions and suspicious
    behaviour facilitates trustful cooperation in prisoners dilemma.  Journal of Theoretical
    Biology. 433, 64–72.
  mla: Priklopil, Tadeas, et al. “Optional Interactions and Suspicious Behaviour Facilitates
    Trustful Cooperation in Prisoners Dilemma.” <i> Journal of Theoretical Biology</i>,
    vol. 433, Elsevier, 2017, pp. 64–72, doi:<a href="https://doi.org/10.1016/j.jtbi.2017.08.025">10.1016/j.jtbi.2017.08.025</a>.
  short: T. Priklopil, K. Chatterjee, M. Nowak,  Journal of Theoretical Biology 433
    (2017) 64–72.
date_created: 2018-12-11T11:48:16Z
date_published: 2017-11-21T00:00:00Z
date_updated: 2023-09-27T12:29:02Z
day: '21'
ddc:
- '000'
- '570'
department:
- _id: KrCh
doi: 10.1016/j.jtbi.2017.08.025
ec_funded: 1
external_id:
  isi:
  - '000412039800007'
  pmid:
  - '28867224'
file:
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  checksum: 4b43af1615ebf1a861840cb03d8a320c
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  creator: dernst
  date_created: 2019-11-19T07:57:39Z
  date_updated: 2020-07-14T12:47:58Z
  file_id: '7047'
  file_name: 2017_JournTheoretBio_Priklopil.pdf
  file_size: 537323
  relation: main_file
file_date_updated: 2020-07-14T12:47:58Z
has_accepted_license: '1'
intvolume: '       433'
isi: 1
language:
- iso: eng
month: '11'
oa: 1
oa_version: Submitted Version
page: 64 - 72
pmid: 1
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
publication: ' Journal of Theoretical Biology'
publication_identifier:
  issn:
  - '00225193'
publication_status: published
publisher: Elsevier
publist_id: '6923'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Optional interactions and suspicious behaviour facilitates trustful cooperation
  in prisoners dilemma
tmp:
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  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 433
year: '2017'
...
---
_id: '745'
abstract:
- lang: eng
  text: 'Fluid flows in nature and applications are frequently subject to periodic
    velocity modulations. Surprisingly, even for the generic case of flow through
    a straight pipe, there is little consensus regarding the influence of pulsation
    on the transition threshold to turbulence: while most studies predict a monotonically
    increasing threshold with pulsation frequency (i.e. Womersley number, ), others
    observe a decreasing threshold for identical parameters and only observe an increasing
    threshold at low . In the present study we apply recent advances in the understanding
    of transition in steady shear flows to pulsating pipe flow. For moderate pulsation
    amplitudes we find that the first instability encountered is subcritical (i.e.
    requiring finite amplitude disturbances) and gives rise to localized patches of
    turbulence (''puffs'') analogous to steady pipe flow. By monitoring the impact
    of pulsation on the lifetime of turbulence we map the onset of turbulence in parameter
    space. Transition in pulsatile flow can be separated into three regimes. At small
    Womersley numbers the dynamics is dominated by the decay turbulence suffers during
    the slower part of the cycle and hence transition is delayed significantly. As
    shown in this regime thresholds closely agree with estimates based on a quasi-steady
    flow assumption only taking puff decay rates into account. The transition point
    predicted in the zero limit equals to the critical point for steady pipe flow
    offset by the oscillation Reynolds number (i.e. the dimensionless oscillation
    amplitude). In the high frequency limit on the other hand, puff lifetimes are
    identical to those in steady pipe flow and hence the transition threshold appears
    to be unaffected by flow pulsation. In the intermediate frequency regime the transition
    threshold sharply drops (with increasing ) from the decay dominated (quasi-steady)
    threshold to the steady pipe flow level.'
article_processing_charge: No
author:
- first_name: Duo
  full_name: Xu, Duo
  id: 3454D55E-F248-11E8-B48F-1D18A9856A87
  last_name: Xu
- first_name: Sascha
  full_name: Warnecke, Sascha
  last_name: Warnecke
- first_name: Baofang
  full_name: Song, Baofang
  last_name: Song
- first_name: Xingyu
  full_name: Ma, Xingyu
  id: 34BADBA6-F248-11E8-B48F-1D18A9856A87
  last_name: Ma
  orcid: 0000-0002-0179-9737
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
citation:
  ama: Xu D, Warnecke S, Song B, Ma X, Hof B. Transition to turbulence in pulsating
    pipe flow. <i>Journal of Fluid Mechanics</i>. 2017;831:418-432. doi:<a href="https://doi.org/10.1017/jfm.2017.620">10.1017/jfm.2017.620</a>
  apa: Xu, D., Warnecke, S., Song, B., Ma, X., &#38; Hof, B. (2017). Transition to
    turbulence in pulsating pipe flow. <i>Journal of Fluid Mechanics</i>. Cambridge
    University Press. <a href="https://doi.org/10.1017/jfm.2017.620">https://doi.org/10.1017/jfm.2017.620</a>
  chicago: Xu, Duo, Sascha Warnecke, Baofang Song, Xingyu Ma, and Björn Hof. “Transition
    to Turbulence in Pulsating Pipe Flow.” <i>Journal of Fluid Mechanics</i>. Cambridge
    University Press, 2017. <a href="https://doi.org/10.1017/jfm.2017.620">https://doi.org/10.1017/jfm.2017.620</a>.
  ieee: D. Xu, S. Warnecke, B. Song, X. Ma, and B. Hof, “Transition to turbulence
    in pulsating pipe flow,” <i>Journal of Fluid Mechanics</i>, vol. 831. Cambridge
    University Press, pp. 418–432, 2017.
  ista: Xu D, Warnecke S, Song B, Ma X, Hof B. 2017. Transition to turbulence in pulsating
    pipe flow. Journal of Fluid Mechanics. 831, 418–432.
  mla: Xu, Duo, et al. “Transition to Turbulence in Pulsating Pipe Flow.” <i>Journal
    of Fluid Mechanics</i>, vol. 831, Cambridge University Press, 2017, pp. 418–32,
    doi:<a href="https://doi.org/10.1017/jfm.2017.620">10.1017/jfm.2017.620</a>.
  short: D. Xu, S. Warnecke, B. Song, X. Ma, B. Hof, Journal of Fluid Mechanics 831
    (2017) 418–432.
date_created: 2018-12-11T11:48:17Z
date_published: 2017-11-25T00:00:00Z
date_updated: 2023-09-27T12:28:12Z
day: '25'
department:
- _id: BjHo
doi: 10.1017/jfm.2017.620
ec_funded: 1
external_id:
  isi:
  - '000412934800005'
intvolume: '       831'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1709.03738
month: '11'
oa: 1
oa_version: Submitted Version
page: 418 - 432
project:
- _id: 25152F3A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '306589'
  name: Decoding the complexity of turbulence at its origin
publication: Journal of Fluid Mechanics
publication_identifier:
  issn:
  - '00221120'
publication_status: published
publisher: Cambridge University Press
publist_id: '6922'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Transition to turbulence in pulsating pipe flow
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 831
year: '2017'
...
---
_id: '746'
abstract:
- lang: eng
  text: Metabotropic glutamate receptor subtype 5 (mGluR5) is crucially implicated
    in the pathophysiology of Fragile X Syndrome (FXS); however, its dysfunction at
    the sub-cellular level, and related synaptic and cognitive phenotypes are unexplored.
    Here, we probed the consequences of mGluR5/Homer scaffold disruption for mGluR5
    cell-surface mobility, synaptic N-methyl-D-Aspartate receptor (NMDAR) function,
    and behavioral phenotypes in the second-generation Fmr1 knockout (KO) mouse. Using
    single-molecule tracking, we found that mGluR5 was significantly more mobile at
    synapses in hippocampal Fmr1 KO neurons, causing an increased synaptic surface
    co-clustering of mGluR5 and NMDAR. This correlated with a reduced amplitude of
    synaptic NMDAR currents, a lack of their mGluR5-Activated long-Term depression,
    and NMDAR/hippocampus dependent cognitive deficits. These synaptic and behavioral
    phenomena were reversed by knocking down Homer1a in Fmr1 KO mice. Our study provides
    a mechanistic link between changes of mGluR5 dynamics and pathological phenotypes
    of FXS, unveiling novel targets for mGluR5-based therapeutics.
article_number: '1103'
article_processing_charge: No
author:
- first_name: Elisabetta
  full_name: Aloisi, Elisabetta
  last_name: Aloisi
- first_name: Katy
  full_name: Le Corf, Katy
  last_name: Le Corf
- first_name: Julien
  full_name: Dupuis, Julien
  last_name: Dupuis
- first_name: Pei
  full_name: Zhang, Pei
  last_name: Zhang
- first_name: Melanie
  full_name: Ginger, Melanie
  last_name: Ginger
- first_name: Virginie
  full_name: Labrousse, Virginie
  last_name: Labrousse
- first_name: Michela
  full_name: Spatuzza, Michela
  last_name: Spatuzza
- first_name: Matthias
  full_name: Georg Haberl, Matthias
  last_name: Georg Haberl
- first_name: Lara
  full_name: Costa, Lara
  last_name: Costa
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Anke
  full_name: Tappe Theodor, Anke
  last_name: Tappe Theodor
- first_name: Fillippo
  full_name: Drago, Fillippo
  last_name: Drago
- first_name: Pier
  full_name: Vincenzo Piazza, Pier
  last_name: Vincenzo Piazza
- first_name: Christophe
  full_name: Mulle, Christophe
  last_name: Mulle
- first_name: Laurent
  full_name: Groc, Laurent
  last_name: Groc
- first_name: Lucia
  full_name: Ciranna, Lucia
  last_name: Ciranna
- first_name: Maria
  full_name: Catania, Maria
  last_name: Catania
- first_name: Andreas
  full_name: Frick, Andreas
  last_name: Frick
citation:
  ama: Aloisi E, Le Corf K, Dupuis J, et al. Altered surface mGluR5 dynamics provoke
    synaptic NMDAR dysfunction and cognitive defects in Fmr1 knockout mice. <i>Nature
    Communications</i>. 2017;8(1). doi:<a href="https://doi.org/10.1038/s41467-017-01191-2">10.1038/s41467-017-01191-2</a>
  apa: Aloisi, E., Le Corf, K., Dupuis, J., Zhang, P., Ginger, M., Labrousse, V.,
    … Frick, A. (2017). Altered surface mGluR5 dynamics provoke synaptic NMDAR dysfunction
    and cognitive defects in Fmr1 knockout mice. <i>Nature Communications</i>. Nature
    Publishing Group. <a href="https://doi.org/10.1038/s41467-017-01191-2">https://doi.org/10.1038/s41467-017-01191-2</a>
  chicago: Aloisi, Elisabetta, Katy Le Corf, Julien Dupuis, Pei Zhang, Melanie Ginger,
    Virginie Labrousse, Michela Spatuzza, et al. “Altered Surface MGluR5 Dynamics
    Provoke Synaptic NMDAR Dysfunction and Cognitive Defects in Fmr1 Knockout Mice.”
    <i>Nature Communications</i>. Nature Publishing Group, 2017. <a href="https://doi.org/10.1038/s41467-017-01191-2">https://doi.org/10.1038/s41467-017-01191-2</a>.
  ieee: E. Aloisi <i>et al.</i>, “Altered surface mGluR5 dynamics provoke synaptic
    NMDAR dysfunction and cognitive defects in Fmr1 knockout mice,” <i>Nature Communications</i>,
    vol. 8, no. 1. Nature Publishing Group, 2017.
  ista: Aloisi E, Le Corf K, Dupuis J, Zhang P, Ginger M, Labrousse V, Spatuzza M,
    Georg Haberl M, Costa L, Shigemoto R, Tappe Theodor A, Drago F, Vincenzo Piazza
    P, Mulle C, Groc L, Ciranna L, Catania M, Frick A. 2017. Altered surface mGluR5
    dynamics provoke synaptic NMDAR dysfunction and cognitive defects in Fmr1 knockout
    mice. Nature Communications. 8(1), 1103.
  mla: Aloisi, Elisabetta, et al. “Altered Surface MGluR5 Dynamics Provoke Synaptic
    NMDAR Dysfunction and Cognitive Defects in Fmr1 Knockout Mice.” <i>Nature Communications</i>,
    vol. 8, no. 1, 1103, Nature Publishing Group, 2017, doi:<a href="https://doi.org/10.1038/s41467-017-01191-2">10.1038/s41467-017-01191-2</a>.
  short: E. Aloisi, K. Le Corf, J. Dupuis, P. Zhang, M. Ginger, V. Labrousse, M. Spatuzza,
    M. Georg Haberl, L. Costa, R. Shigemoto, A. Tappe Theodor, F. Drago, P. Vincenzo
    Piazza, C. Mulle, L. Groc, L. Ciranna, M. Catania, A. Frick, Nature Communications
    8 (2017).
date_created: 2018-12-11T11:48:17Z
date_published: 2017-12-01T00:00:00Z
date_updated: 2023-09-27T12:27:30Z
day: '01'
ddc:
- '571'
department:
- _id: RySh
doi: 10.1038/s41467-017-01191-2
external_id:
  isi:
  - '000413571300004'
file:
- access_level: open_access
  checksum: 99ceee57549dc0461e3adfc037ec70a9
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:17:32Z
  date_updated: 2020-07-14T12:47:58Z
  file_id: '5287'
  file_name: IST-2017-915-v1+1_s41467-017-01191-2.pdf
  file_size: 1841650
  relation: main_file
file_date_updated: 2020-07-14T12:47:58Z
has_accepted_license: '1'
intvolume: '         8'
isi: 1
issue: '1'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_identifier:
  issn:
  - '20411723'
publication_status: published
publisher: Nature Publishing Group
publist_id: '6921'
pubrep_id: '915'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Altered surface mGluR5 dynamics provoke synaptic NMDAR dysfunction and cognitive
  defects in Fmr1 knockout mice
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 8
year: '2017'
...
