---
_id: '12137'
abstract:
- lang: eng
  text: We investigate the local self-sustained process underlying spiral turbulence
    in counter-rotating Taylor–Couette flow using a periodic annular domain, shaped
    as a parallelogram, two of whose sides are aligned with the cylindrical helix
    described by the spiral pattern. The primary focus of the study is placed on the
    emergence of drifting–rotating waves (DRW) that capture, in a relatively small
    domain, the main features of coherent structures typically observed in developed
    turbulence. The transitional dynamics of the subcritical region, far below the
    first instability of the laminar circular Couette flow, is determined by the upper
    and lower branches of DRW solutions originated at saddle-node bifurcations. The
    mechanism whereby these solutions self-sustain, and the chaotic dynamics they
    induce, are conspicuously reminiscent of other subcritical shear flows. Remarkably,
    the flow properties of DRW persist even as the Reynolds number is increased beyond
    the linear stability threshold of the base flow. Simulations in a narrow parallelogram
    domain stretched in the azimuthal direction to revolve around the apparatus a
    full turn confirm that self-sustained vortices eventually concentrate into a localised
    pattern. The resulting statistical steady state satisfactorily reproduces qualitatively,
    and to a certain degree also quantitatively, the topology and properties of spiral
    turbulence as calculated in a large periodic domain of sufficient aspect ratio
    that is representative of the real system.
acknowledgement: "K.D.’s research was supported by an Australian Research Council
  Discovery Early Career\r\nResearcher Award (DE170100171). B.W., R.A., F.M. and A.M.
  research was supported by the Spanish Ministerio de Economía y Competitivdad (grant
  numbers FIS2016-77849-R and FIS2017-85794-P) and Ministerio de Ciencia e Innovación
  (grant number PID2020-114043GB-I00) and the Generalitat de Catalunya (grant 2017-SGR-785).
  B.W.’s research was also supported by the Chinese Scholarship Council (grant CSC
  no. 201806440152)."
article_number: A21
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: B.
  full_name: Wang, B.
  last_name: Wang
- first_name: Roger
  full_name: Ayats López, Roger
  id: ab77522d-073b-11ed-8aff-e71b39258362
  last_name: Ayats López
  orcid: 0000-0001-6572-0621
- first_name: K.
  full_name: Deguchi, K.
  last_name: Deguchi
- first_name: F.
  full_name: Mellibovsky, F.
  last_name: Mellibovsky
- first_name: A.
  full_name: Meseguer, A.
  last_name: Meseguer
citation:
  ama: Wang B, Ayats López R, Deguchi K, Mellibovsky F, Meseguer A. Self-sustainment
    of coherent structures in counter-rotating Taylor–Couette flow. <i>Journal of
    Fluid Mechanics</i>. 2022;951. doi:<a href="https://doi.org/10.1017/jfm.2022.828">10.1017/jfm.2022.828</a>
  apa: Wang, B., Ayats López, R., Deguchi, K., Mellibovsky, F., &#38; Meseguer, A.
    (2022). Self-sustainment of coherent structures in counter-rotating Taylor–Couette
    flow. <i>Journal of Fluid Mechanics</i>. Cambridge University Press. <a href="https://doi.org/10.1017/jfm.2022.828">https://doi.org/10.1017/jfm.2022.828</a>
  chicago: Wang, B., Roger Ayats López, K. Deguchi, F. Mellibovsky, and A. Meseguer.
    “Self-Sustainment of Coherent Structures in Counter-Rotating Taylor–Couette Flow.”
    <i>Journal of Fluid Mechanics</i>. Cambridge University Press, 2022. <a href="https://doi.org/10.1017/jfm.2022.828">https://doi.org/10.1017/jfm.2022.828</a>.
  ieee: B. Wang, R. Ayats López, K. Deguchi, F. Mellibovsky, and A. Meseguer, “Self-sustainment
    of coherent structures in counter-rotating Taylor–Couette flow,” <i>Journal of
    Fluid Mechanics</i>, vol. 951. Cambridge University Press, 2022.
  ista: Wang B, Ayats López R, Deguchi K, Mellibovsky F, Meseguer A. 2022. Self-sustainment
    of coherent structures in counter-rotating Taylor–Couette flow. Journal of Fluid
    Mechanics. 951, A21.
  mla: Wang, B., et al. “Self-Sustainment of Coherent Structures in Counter-Rotating
    Taylor–Couette Flow.” <i>Journal of Fluid Mechanics</i>, vol. 951, A21, Cambridge
    University Press, 2022, doi:<a href="https://doi.org/10.1017/jfm.2022.828">10.1017/jfm.2022.828</a>.
  short: B. Wang, R. Ayats López, K. Deguchi, F. Mellibovsky, A. Meseguer, Journal
    of Fluid Mechanics 951 (2022).
date_created: 2023-01-12T12:04:17Z
date_published: 2022-11-07T00:00:00Z
date_updated: 2023-08-04T08:54:16Z
day: '07'
department:
- _id: BjHo
doi: 10.1017/jfm.2022.828
external_id:
  arxiv:
  - '2207.12990'
  isi:
  - '000879446900001'
intvolume: '       951'
isi: 1
keyword:
- Mechanical Engineering
- Mechanics of Materials
- Condensed Matter Physics
- Applied Mathematics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2207.12990'
month: '11'
oa: 1
oa_version: Preprint
publication: Journal of Fluid Mechanics
publication_identifier:
  eissn:
  - 1469-7645
  issn:
  - 0022-1120
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Self-sustainment of coherent structures in counter-rotating Taylor–Couette
  flow
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 951
year: '2022'
...
---
_id: '12138'
abstract:
- lang: eng
  text: 'Complex I is the first enzyme in the respiratory chain, which is responsible
    for energy production in mitochondria and bacteria1. Complex I couples the transfer
    of two electrons from NADH to quinone and the translocation of four protons across
    the membrane2, but the coupling mechanism remains contentious. Here we present
    cryo-electron microscopy structures of Escherichia coli complex I (EcCI) in different
    redox states, including catalytic turnover. EcCI exists mostly in the open state,
    in which the quinone cavity is exposed to the cytosol, allowing access for water
    molecules, which enable quinone movements. Unlike the mammalian paralogues3, EcCI
    can convert to the closed state only during turnover, showing that closed and
    open states are genuine turnover intermediates. The open-to-closed transition
    results in the tightly engulfed quinone cavity being connected to the central
    axis of the membrane arm, a source of substrate protons. Consistently, the proportion
    of the closed state increases with increasing pH. We propose a detailed but straightforward
    and robust mechanism comprising a ‘domino effect’ series of proton transfers and
    electrostatic interactions: the forward wave (‘dominoes stacking’) primes the
    pump, and the reverse wave (‘dominoes falling’) results in the ejection of all
    pumped protons from the distal subunit NuoL. This mechanism explains why protons
    exit exclusively from the NuoL subunit and is supported by our mutagenesis data.
    We contend that this is a universal coupling mechanism of complex I and related
    enzymes.'
acknowledged_ssus:
- _id: EM-Fac
- _id: LifeSc
- _id: ScienComp
acknowledgement: This research was supported by the Scientific Service Units (SSU)
  of IST Austria through resources provided by the Electron Microscopy Facility (EMF),
  the Life Science Facility (LSF) and the IST high-performance computing cluster.
  We thank V.-V. Hodirnau from IST Austria EMF, M. Babiak from CEITEC for assistance
  with collecting cryo-EM data and A. Charnagalov for the assistance with protein
  purification. V.K. was a recipient of a DOC Fellowship of the Austrian Academy of
  Sciences at the Institute of Science and Technology, Austria. V.K. and O.P. are
  funded by the ERC Advanced Grant 101020697 RESPICHAIN to L.S. This work was also
  supported by the Medical Research Council (UK).
article_processing_charge: No
article_type: original
author:
- first_name: Vladyslav
  full_name: Kravchuk, Vladyslav
  id: 4D62F2A6-F248-11E8-B48F-1D18A9856A87
  last_name: Kravchuk
- first_name: Olga
  full_name: Petrova, Olga
  id: 5D8C9660-5D49-11EA-8188-567B3DDC885E
  last_name: Petrova
- first_name: Domen
  full_name: Kampjut, Domen
  id: 37233050-F248-11E8-B48F-1D18A9856A87
  last_name: Kampjut
- first_name: Anna
  full_name: Wojciechowska-Bason, Anna
  last_name: Wojciechowska-Bason
- first_name: Zara
  full_name: Breese, Zara
  last_name: Breese
- first_name: Leonid A
  full_name: Sazanov, Leonid A
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
citation:
  ama: Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov
    LA. A universal coupling mechanism of respiratory complex I. <i>Nature</i>. 2022;609(7928):808-814.
    doi:<a href="https://doi.org/10.1038/s41586-022-05199-7">10.1038/s41586-022-05199-7</a>
  apa: Kravchuk, V., Petrova, O., Kampjut, D., Wojciechowska-Bason, A., Breese, Z.,
    &#38; Sazanov, L. A. (2022). A universal coupling mechanism of respiratory complex
    I. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-022-05199-7">https://doi.org/10.1038/s41586-022-05199-7</a>
  chicago: Kravchuk, Vladyslav, Olga Petrova, Domen Kampjut, Anna Wojciechowska-Bason,
    Zara Breese, and Leonid A Sazanov. “A Universal Coupling Mechanism of Respiratory
    Complex I.” <i>Nature</i>. Springer Nature, 2022. <a href="https://doi.org/10.1038/s41586-022-05199-7">https://doi.org/10.1038/s41586-022-05199-7</a>.
  ieee: V. Kravchuk, O. Petrova, D. Kampjut, A. Wojciechowska-Bason, Z. Breese, and
    L. A. Sazanov, “A universal coupling mechanism of respiratory complex I,” <i>Nature</i>,
    vol. 609, no. 7928. Springer Nature, pp. 808–814, 2022.
  ista: Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov
    LA. 2022. A universal coupling mechanism of respiratory complex I. Nature. 609(7928),
    808–814.
  mla: Kravchuk, Vladyslav, et al. “A Universal Coupling Mechanism of Respiratory
    Complex I.” <i>Nature</i>, vol. 609, no. 7928, Springer Nature, 2022, pp. 808–14,
    doi:<a href="https://doi.org/10.1038/s41586-022-05199-7">10.1038/s41586-022-05199-7</a>.
  short: V. Kravchuk, O. Petrova, D. Kampjut, A. Wojciechowska-Bason, Z. Breese, L.A.
    Sazanov, Nature 609 (2022) 808–814.
date_created: 2023-01-12T12:04:33Z
date_published: 2022-09-22T00:00:00Z
date_updated: 2023-08-04T08:54:52Z
day: '22'
ddc:
- '572'
department:
- _id: LeSa
doi: 10.1038/s41586-022-05199-7
ec_funded: 1
external_id:
  isi:
  - '000854788200001'
  pmid:
  - '36104567'
file:
- access_level: open_access
  checksum: d42a93e24f59e883ef0b5429832391d0
  content_type: application/pdf
  creator: lsazanov
  date_created: 2023-05-30T17:05:31Z
  date_updated: 2023-05-30T17:05:31Z
  file_id: '13104'
  file_name: EcCxI_manuscript_rev3_noSI_updated_withFigs_opt.pdf
  file_size: 1425655
  relation: main_file
  success: 1
- access_level: open_access
  checksum: 5422bc0a73b3daadafa262c7ea6deae3
  content_type: application/pdf
  creator: lsazanov
  date_created: 2023-05-30T17:07:05Z
  date_updated: 2023-05-30T17:07:05Z
  file_id: '13105'
  file_name: EcCxI_manuscript_rev3_SI_All_opt_upd.pdf
  file_size: 9842513
  relation: main_file
  success: 1
file_date_updated: 2023-05-30T17:07:05Z
has_accepted_license: '1'
intvolume: '       609'
isi: 1
issue: '7928'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '09'
oa: 1
oa_version: Submitted Version
page: 808-814
pmid: 1
project:
- _id: 238A0A5A-32DE-11EA-91FC-C7463DDC885E
  grant_number: '25541'
  name: 'Structural characterization of E. coli complex I: an important mechanistic
    model'
- _id: 627abdeb-2b32-11ec-9570-ec31a97243d3
  call_identifier: H2020
  grant_number: '101020697'
  name: Structure and mechanism of respiratory chain molecular machines
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1038/s41586-022-05457-8
  - description: News on ISTA website
    relation: press_release
    url: https://ista.ac.at/en/news/proton-dominos-kick-off-life/
  record:
  - id: '12781'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: A universal coupling mechanism of respiratory complex I
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 609
year: '2022'
...
---
_id: '12139'
abstract:
- lang: eng
  text: We demonstrate the formation of robust zero-energy modes close to magnetic
    impurities in the iron-based superconductor FeSe1-z Tez. We find that the Zeeman
    field generated by the impurity favors a spin-triplet interorbital pairing as
    opposed to the spin-singlet intraorbital pairing prevalent in the bulk. The preferred
    spin-triplet pairing preserves time-reversal symmetry and is topological, as robust,
    topologically protected zero modes emerge at the boundary between regions with
    different pairing states. Moreover, the zero modes form Kramers doublets that
    are insensitive to the direction of the spin polarization or to the separation
    between impurities. We argue that our theoretical results are consistent with
    recent experimental measurements on FeSe1-z Tez.
acknowledgement: "We thank Armin Rahmani, Andrey V. Chubukov, Jay D. Sau and Ruixing
  Zhang for fruitful discussions. AK and PG are supported by NSF-DMR2037996. PG also
  acknowledges support from NSF-DMR1824265. RMF was supported by the U. S. Department
  of Energy, Office\r\nof Science, Basic Energy Sciences, Materials Sciences and Engineering
  Division, under Award No. DE-SC0020045. Part of this work was performed at the Aspen
  Center for Physics, which is supported by National Science Foundation grant PHY-1607611. "
article_number: L201107
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Areg
  full_name: Ghazaryan, Areg
  id: 4AF46FD6-F248-11E8-B48F-1D18A9856A87
  last_name: Ghazaryan
  orcid: 0000-0001-9666-3543
- first_name: Ammar
  full_name: Kirmani, Ammar
  last_name: Kirmani
- first_name: Rafael M.
  full_name: Fernandes, Rafael M.
  last_name: Fernandes
- first_name: Pouyan
  full_name: Ghaemi, Pouyan
  last_name: Ghaemi
citation:
  ama: Ghazaryan A, Kirmani A, Fernandes RM, Ghaemi P. Anomalous Shiba states in topological
    iron-based superconductors. <i>Physical Review B</i>. 2022;106(20). doi:<a href="https://doi.org/10.1103/physrevb.106.l201107">10.1103/physrevb.106.l201107</a>
  apa: Ghazaryan, A., Kirmani, A., Fernandes, R. M., &#38; Ghaemi, P. (2022). Anomalous
    Shiba states in topological iron-based superconductors. <i>Physical Review B</i>.
    American Physical Society. <a href="https://doi.org/10.1103/physrevb.106.l201107">https://doi.org/10.1103/physrevb.106.l201107</a>
  chicago: Ghazaryan, Areg, Ammar Kirmani, Rafael M. Fernandes, and Pouyan Ghaemi.
    “Anomalous Shiba States in Topological Iron-Based Superconductors.” <i>Physical
    Review B</i>. American Physical Society, 2022. <a href="https://doi.org/10.1103/physrevb.106.l201107">https://doi.org/10.1103/physrevb.106.l201107</a>.
  ieee: A. Ghazaryan, A. Kirmani, R. M. Fernandes, and P. Ghaemi, “Anomalous Shiba
    states in topological iron-based superconductors,” <i>Physical Review B</i>, vol.
    106, no. 20. American Physical Society, 2022.
  ista: Ghazaryan A, Kirmani A, Fernandes RM, Ghaemi P. 2022. Anomalous Shiba states
    in topological iron-based superconductors. Physical Review B. 106(20), L201107.
  mla: Ghazaryan, Areg, et al. “Anomalous Shiba States in Topological Iron-Based Superconductors.”
    <i>Physical Review B</i>, vol. 106, no. 20, L201107, American Physical Society,
    2022, doi:<a href="https://doi.org/10.1103/physrevb.106.l201107">10.1103/physrevb.106.l201107</a>.
  short: A. Ghazaryan, A. Kirmani, R.M. Fernandes, P. Ghaemi, Physical Review B 106
    (2022).
date_created: 2023-01-12T12:04:43Z
date_published: 2022-11-15T00:00:00Z
date_updated: 2023-08-04T08:55:31Z
day: '15'
department:
- _id: MiLe
doi: 10.1103/physrevb.106.l201107
external_id:
  arxiv:
  - '2207.12425'
  isi:
  - '000893171800001'
intvolume: '       106'
isi: 1
issue: '20'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2207.12425'
month: '11'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_identifier:
  eissn:
  - 2469-9969
  issn:
  - 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Anomalous Shiba states in topological iron-based superconductors
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 106
year: '2022'
...
---
_id: '12140'
abstract:
- lang: eng
  text: Microglia are dynamic cells, constantly surveying their surroundings and interacting
    with neurons and synapses. Indeed, a wealth of knowledge has revealed a critical
    role of microglia in modulating synaptic transmission and plasticity in the developing
    brain. In the past decade, novel pharmacological and genetic strategies have allowed
    the acute removal of microglia, opening the possibility to explore and understand
    the role of microglia also in the adult brain. In this review, we summarized and
    discussed the contribution of microglia depletion strategies to the current understanding
    of the role of microglia on synaptic function, learning and memory, and behavior
    both in physiological and pathological conditions. We first described the available
    microglia depletion methods highlighting their main strengths and weaknesses.
    We then reviewed the impact of microglia depletion on structural and functional
    synaptic plasticity. Next, we focused our analysis on the effects of microglia
    depletion on behavior, including general locomotor activity, sensory perception,
    motor function, sociability, learning and memory both in healthy animals and animal
    models of disease. Finally, we integrated the findings from the reviewed studies
    and discussed the emerging roles of microglia on the maintenance of synaptic function,
    learning, memory strength and forgetfulness, and the implications of microglia
    depletion in models of brain disease.
acknowledgement: "The write-up of the review was supported by Sapienza University
  of Rome (Fondi di Ateneo, grant numbers #MA32117A7B698029 and #PH12017270934C3C
  to SD), Regione Lazio (POR FSE 2014/20, grant number #19036AP000000019 to SD), Fulbright
  2019 (grant number\r\n#FSP-P005556 to SD), Institute Pasteur Italia (Fondi Cenci
  Bolognetti #363 to DR), and Network of European Funding for Neuroscience Research
  (ERA-NET NEURON Transnational\r\nResearch Projects on Neurodevelopmental Disorders
  2021, grant acronym #JTC2021-SHANKAstro to DR)."
article_number: '1022431'
article_processing_charge: No
article_type: original
author:
- first_name: Bernadette
  full_name: Basilico, Bernadette
  id: 36035796-5ACA-11E9-A75E-7AF2E5697425
  last_name: Basilico
  orcid: 0000-0003-1843-3173
- first_name: Laura
  full_name: Ferrucci, Laura
  last_name: Ferrucci
- first_name: Azka
  full_name: Khan, Azka
  last_name: Khan
- first_name: Silvia
  full_name: Di Angelantonio, Silvia
  last_name: Di Angelantonio
- first_name: Davide
  full_name: Ragozzino, Davide
  last_name: Ragozzino
- first_name: Ingrid
  full_name: Reverte, Ingrid
  last_name: Reverte
citation:
  ama: Basilico B, Ferrucci L, Khan A, Di Angelantonio S, Ragozzino D, Reverte I.
    What microglia depletion approaches tell us about the role of microglia on synaptic
    function and behavior. <i>Frontiers in Cellular Neuroscience</i>. 2022;16. doi:<a
    href="https://doi.org/10.3389/fncel.2022.1022431">10.3389/fncel.2022.1022431</a>
  apa: Basilico, B., Ferrucci, L., Khan, A., Di Angelantonio, S., Ragozzino, D., &#38;
    Reverte, I. (2022). What microglia depletion approaches tell us about the role
    of microglia on synaptic function and behavior. <i>Frontiers in Cellular Neuroscience</i>.
    Frontiers Media. <a href="https://doi.org/10.3389/fncel.2022.1022431">https://doi.org/10.3389/fncel.2022.1022431</a>
  chicago: Basilico, Bernadette, Laura Ferrucci, Azka Khan, Silvia Di Angelantonio,
    Davide Ragozzino, and Ingrid Reverte. “What Microglia Depletion Approaches Tell
    Us about the Role of Microglia on Synaptic Function and Behavior.” <i>Frontiers
    in Cellular Neuroscience</i>. Frontiers Media, 2022. <a href="https://doi.org/10.3389/fncel.2022.1022431">https://doi.org/10.3389/fncel.2022.1022431</a>.
  ieee: B. Basilico, L. Ferrucci, A. Khan, S. Di Angelantonio, D. Ragozzino, and I.
    Reverte, “What microglia depletion approaches tell us about the role of microglia
    on synaptic function and behavior,” <i>Frontiers in Cellular Neuroscience</i>,
    vol. 16. Frontiers Media, 2022.
  ista: Basilico B, Ferrucci L, Khan A, Di Angelantonio S, Ragozzino D, Reverte I.
    2022. What microglia depletion approaches tell us about the role of microglia
    on synaptic function and behavior. Frontiers in Cellular Neuroscience. 16, 1022431.
  mla: Basilico, Bernadette, et al. “What Microglia Depletion Approaches Tell Us about
    the Role of Microglia on Synaptic Function and Behavior.” <i>Frontiers in Cellular
    Neuroscience</i>, vol. 16, 1022431, Frontiers Media, 2022, doi:<a href="https://doi.org/10.3389/fncel.2022.1022431">10.3389/fncel.2022.1022431</a>.
  short: B. Basilico, L. Ferrucci, A. Khan, S. Di Angelantonio, D. Ragozzino, I. Reverte,
    Frontiers in Cellular Neuroscience 16 (2022).
date_created: 2023-01-12T12:04:50Z
date_published: 2022-11-04T00:00:00Z
date_updated: 2023-08-04T08:56:10Z
day: '04'
ddc:
- '570'
department:
- _id: GaNo
doi: 10.3389/fncel.2022.1022431
external_id:
  isi:
  - '000886526600001'
  pmid:
  - '36406752'
file:
- access_level: open_access
  checksum: 84696213ecf99182c58a9f34b9ff2e23
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-24T09:16:29Z
  date_updated: 2023-01-24T09:16:29Z
  file_id: '12352'
  file_name: 2022_FrontiersNeuroscience_Basilico.pdf
  file_size: 6399987
  relation: main_file
  success: 1
file_date_updated: 2023-01-24T09:16:29Z
has_accepted_license: '1'
intvolume: '        16'
isi: 1
keyword:
- Cellular and Molecular Neuroscience
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
pmid: 1
publication: Frontiers in Cellular Neuroscience
publication_identifier:
  issn:
  - 1662-5102
publication_status: published
publisher: Frontiers Media
quality_controlled: '1'
scopus_import: '1'
status: public
title: What microglia depletion approaches tell us about the role of microglia on
  synaptic function and behavior
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 16
year: '2022'
...
---
_id: '12142'
abstract:
- lang: eng
  text: Theory for liability-scale models of the underlying genetic basis of complex
    disease provides an important way to interpret, compare, and understand results
    generated from biological studies. In particular, through estimation of the liability-scale
    heritability (LSH), liability models facilitate an understanding and comparison
    of the relative importance of genetic and environmental risk factors that shape
    different clinically important disease outcomes. Increasingly, large-scale biobank
    studies that link genetic information to electronic health records, containing
    hundreds of disease diagnosis indicators that mostly occur infrequently within
    the sample, are becoming available. Here, we propose an extension of the existing
    liability-scale model theory suitable for estimating LSH in biobank studies of
    low-prevalence disease. In a simulation study, we find that our derived expression
    yields lower mean square error (MSE) and is less sensitive to prevalence misspecification
    as compared to previous transformations for diseases with  =< 2% population prevalence
    and LSH of =< 0.45, especially if the biobank sample prevalence is less than that
    of the wider population. Applying our expression to 13 diagnostic outcomes of  =<
    3% prevalence in the UK Biobank study revealed important differences in LSH obtained
    from the different theoretical expressions that impact the conclusions made when
    comparing LSH across disease outcomes. This demonstrates the importance of careful
    consideration for estimation and prediction of low-prevalence disease outcomes
    and facilitates improved inference of the underlying genetic basis of  =< 2% population
    prevalence diseases, especially where biobank sample ascertainment results in
    a healthier sample population.
acknowledged_ssus:
- _id: ScienComp
acknowledgement: This project was funded by an SNSF Eccellenza grant to M.R.R. (PCEGP3-181181),
  core funding from the Institute of Science and Technology Austria, and core funding
  from the Department of Computational Biology of the University of Lausanne. Z.K.
  was funded by the Swiss National Science Foundation (310030-189147). This research
  was supported by the Scientific Service Units (SSUs) of IST Austria through resources
  provided by Scientific Computing (SciComp). We would like to thank the participants
  of the UK Biobank.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Sven E.
  full_name: Ojavee, Sven E.
  last_name: Ojavee
- first_name: Zoltan
  full_name: Kutalik, Zoltan
  last_name: Kutalik
- first_name: Matthew Richard
  full_name: Robinson, Matthew Richard
  id: E5D42276-F5DA-11E9-8E24-6303E6697425
  last_name: Robinson
  orcid: 0000-0001-8982-8813
citation:
  ama: Ojavee SE, Kutalik Z, Robinson MR. Liability-scale heritability estimation
    for biobank studies of low-prevalence disease. <i>The American Journal of Human
    Genetics</i>. 2022;109(11):2009-2017. doi:<a href="https://doi.org/10.1016/j.ajhg.2022.09.011">10.1016/j.ajhg.2022.09.011</a>
  apa: Ojavee, S. E., Kutalik, Z., &#38; Robinson, M. R. (2022). Liability-scale heritability
    estimation for biobank studies of low-prevalence disease. <i>The American Journal
    of Human Genetics</i>. Elsevier. <a href="https://doi.org/10.1016/j.ajhg.2022.09.011">https://doi.org/10.1016/j.ajhg.2022.09.011</a>
  chicago: Ojavee, Sven E., Zoltan Kutalik, and Matthew Richard Robinson. “Liability-Scale
    Heritability Estimation for Biobank Studies of Low-Prevalence Disease.” <i>The
    American Journal of Human Genetics</i>. Elsevier, 2022. <a href="https://doi.org/10.1016/j.ajhg.2022.09.011">https://doi.org/10.1016/j.ajhg.2022.09.011</a>.
  ieee: S. E. Ojavee, Z. Kutalik, and M. R. Robinson, “Liability-scale heritability
    estimation for biobank studies of low-prevalence disease,” <i>The American Journal
    of Human Genetics</i>, vol. 109, no. 11. Elsevier, pp. 2009–2017, 2022.
  ista: Ojavee SE, Kutalik Z, Robinson MR. 2022. Liability-scale heritability estimation
    for biobank studies of low-prevalence disease. The American Journal of Human Genetics.
    109(11), 2009–2017.
  mla: Ojavee, Sven E., et al. “Liability-Scale Heritability Estimation for Biobank
    Studies of Low-Prevalence Disease.” <i>The American Journal of Human Genetics</i>,
    vol. 109, no. 11, Elsevier, 2022, pp. 2009–17, doi:<a href="https://doi.org/10.1016/j.ajhg.2022.09.011">10.1016/j.ajhg.2022.09.011</a>.
  short: S.E. Ojavee, Z. Kutalik, M.R. Robinson, The American Journal of Human Genetics
    109 (2022) 2009–2017.
date_created: 2023-01-12T12:05:28Z
date_published: 2022-11-03T00:00:00Z
date_updated: 2023-08-04T08:56:46Z
day: '03'
ddc:
- '570'
department:
- _id: MaRo
doi: 10.1016/j.ajhg.2022.09.011
external_id:
  isi:
  - '000898683500006'
file:
- access_level: open_access
  checksum: 4cd7f12bfe21a8237bb095eedfa26361
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-24T09:23:01Z
  date_updated: 2023-01-24T09:23:01Z
  file_id: '12353'
  file_name: 2022_AJHG_Ojavee.pdf
  file_size: 705195
  relation: main_file
  success: 1
file_date_updated: 2023-01-24T09:23:01Z
has_accepted_license: '1'
intvolume: '       109'
isi: 1
issue: '11'
keyword:
- Genetics (clinical)
- Genetics
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '11'
oa: 1
oa_version: Published Version
page: 2009-2017
project:
- _id: 9B8D11D6-BA93-11EA-9121-9846C619BF3A
  grant_number: PCEGP3_181181
  name: Improving estimation and prediction of common complex disease risk
publication: The American Journal of Human Genetics
publication_identifier:
  issn:
  - 0002-9297
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Liability-scale heritability estimation for biobank studies of low-prevalence
  disease
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 109
year: '2022'
...
---
_id: '12143'
abstract:
- lang: eng
  text: MicroRNA (miRNA) and RNA interference (RNAi) pathways rely on small RNAs produced
    by Dicer endonucleases. Mammalian Dicer primarily supports the essential gene-regulating
    miRNA pathway, but how it is specifically adapted to miRNA biogenesis is unknown.
    We show that the adaptation entails a unique structural role of Dicer’s DExD/H
    helicase domain. Although mice tolerate loss of its putative ATPase function,
    the complete absence of the domain is lethal because it assures high-fidelity
    miRNA biogenesis. Structures of murine Dicer⋅miRNA precursor complexes revealed
    that the DExD/H domain has a helicase-unrelated structural function. It locks
    Dicer in a closed state, which facilitates miRNA precursor selection. Transition
    to a cleavage-competent open state is stimulated by Dicer-binding protein TARBP2.
    Absence of the DExD/H domain or its mutations unlocks the closed state, reduces
    substrate selectivity, and activates RNAi. Thus, the DExD/H domain structurally
    contributes to mammalian miRNA biogenesis and underlies mechanistical partitioning
    of miRNA and RNAi pathways.
acknowledged_ssus:
- _id: EM-Fac
acknowledgement: We thank Kristian Vlahovicek (University of Zagreb) for support of
  bioinformatics analyses and Vladimir Benes (EMBL Sequencing Facility) and Genomics
  and Bioinformatics Core Facility at the Institute of Molecular Genetics for help
  with RNA sequencing. The main funding was provided by the Czech Science Foundation
  (EXPRO grant 20-03950X to P.S. and 22-19896S to R. Stefl). Early stages of the work
  were supported by European Research Council grants under the European Union’s Horizon
  2020 Research and Innovation Programme (grants 647403 to P.S. and 649030 to R. Stefl).
  V.B., D.F.J., and F.H. were in part supported by PhD student fellowships from the
  Charles University; this work will be in part fulfilling requirements for a PhD
  degree as “school work.” Funding of D.Z. included the OP RDE project “Internal Grant
  Agency of Masaryk University” no. CZ.02.2.69/0.0/0.0/19_073/0016943. The Ministry
  of Education, Youth, and Sports of the Czech Republic (MEYS CR) provided institutional
  support for CEITEC 2020 project LQ1601. For technical support, we acknowledge EMBL
  Monterotondo’s genome engineering and transgenic core facilities, the Czech Centre
  for Phenogenomics at the Institute of Molecular Genetics (supported by RVO 68378050
  from the Czech Academy of Sciences and LM2018126 and CZ.02.1.01/0.0/0.0/18_046/0015861
  CCP Infrastructure Upgrade II from MEYS CR), the Cryo-EM and Proteomics Core Facilities
  (CEITEC, Masaryk University) supported by the CIISB research infrastructure (LM2018127
  from MEYS CR), and support from the Scientific Service Units of ISTA through resources
  from the Electron Microscopy Facility. Computational resources included e-Infrastruktura
  CZ (LM2018140) and ELIXIR-CZ (LM2018131) projects by MEYS CR and the Croatian National
  Centres of Research Excellence in Personalized Healthcare (#KK.01.1.1.01.0010) and
  Data Science and Advanced Cooperative Systems (#KK.01.1.1.01.0009) projects funded
  by the European Structural and Investment Funds grants.
article_processing_charge: No
article_type: original
author:
- first_name: David
  full_name: Zapletal, David
  last_name: Zapletal
- first_name: Eliska
  full_name: Taborska, Eliska
  last_name: Taborska
- first_name: Josef
  full_name: Pasulka, Josef
  last_name: Pasulka
- first_name: Radek
  full_name: Malik, Radek
  last_name: Malik
- first_name: Karel
  full_name: Kubicek, Karel
  last_name: Kubicek
- first_name: Martina
  full_name: Zanova, Martina
  last_name: Zanova
- first_name: Christian
  full_name: Much, Christian
  last_name: Much
- first_name: Marek
  full_name: Sebesta, Marek
  last_name: Sebesta
- first_name: Valeria
  full_name: Buccheri, Valeria
  last_name: Buccheri
- first_name: Filip
  full_name: Horvat, Filip
  last_name: Horvat
- first_name: Irena
  full_name: Jenickova, Irena
  last_name: Jenickova
- first_name: Michaela
  full_name: Prochazkova, Michaela
  last_name: Prochazkova
- first_name: Jan
  full_name: Prochazka, Jan
  last_name: Prochazka
- first_name: Matyas
  full_name: Pinkas, Matyas
  last_name: Pinkas
- first_name: Jiri
  full_name: Novacek, Jiri
  last_name: Novacek
- first_name: Diego F.
  full_name: Joseph, Diego F.
  last_name: Joseph
- first_name: Radislav
  full_name: Sedlacek, Radislav
  last_name: Sedlacek
- first_name: Carrie A
  full_name: Bernecky, Carrie A
  id: 2CB9DFE2-F248-11E8-B48F-1D18A9856A87
  last_name: Bernecky
  orcid: 0000-0003-0893-7036
- first_name: Dónal
  full_name: O’Carroll, Dónal
  last_name: O’Carroll
- first_name: Richard
  full_name: Stefl, Richard
  last_name: Stefl
- first_name: Petr
  full_name: Svoboda, Petr
  last_name: Svoboda
citation:
  ama: Zapletal D, Taborska E, Pasulka J, et al. Structural and functional basis of
    mammalian microRNA biogenesis by Dicer. <i>Molecular Cell</i>. 2022;82(21):4064-4079.e13.
    doi:<a href="https://doi.org/10.1016/j.molcel.2022.10.010">10.1016/j.molcel.2022.10.010</a>
  apa: Zapletal, D., Taborska, E., Pasulka, J., Malik, R., Kubicek, K., Zanova, M.,
    … Svoboda, P. (2022). Structural and functional basis of mammalian microRNA biogenesis
    by Dicer. <i>Molecular Cell</i>. Elsevier. <a href="https://doi.org/10.1016/j.molcel.2022.10.010">https://doi.org/10.1016/j.molcel.2022.10.010</a>
  chicago: Zapletal, David, Eliska Taborska, Josef Pasulka, Radek Malik, Karel Kubicek,
    Martina Zanova, Christian Much, et al. “Structural and Functional Basis of Mammalian
    MicroRNA Biogenesis by Dicer.” <i>Molecular Cell</i>. Elsevier, 2022. <a href="https://doi.org/10.1016/j.molcel.2022.10.010">https://doi.org/10.1016/j.molcel.2022.10.010</a>.
  ieee: D. Zapletal <i>et al.</i>, “Structural and functional basis of mammalian microRNA
    biogenesis by Dicer,” <i>Molecular Cell</i>, vol. 82, no. 21. Elsevier, p. 4064–4079.e13,
    2022.
  ista: Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta
    M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek
    J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural
    and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell.
    82(21), 4064–4079.e13.
  mla: Zapletal, David, et al. “Structural and Functional Basis of Mammalian MicroRNA
    Biogenesis by Dicer.” <i>Molecular Cell</i>, vol. 82, no. 21, Elsevier, 2022,
    p. 4064–4079.e13, doi:<a href="https://doi.org/10.1016/j.molcel.2022.10.010">10.1016/j.molcel.2022.10.010</a>.
  short: D. Zapletal, E. Taborska, J. Pasulka, R. Malik, K. Kubicek, M. Zanova, C.
    Much, M. Sebesta, V. Buccheri, F. Horvat, I. Jenickova, M. Prochazkova, J. Prochazka,
    M. Pinkas, J. Novacek, D.F. Joseph, R. Sedlacek, C. Bernecky, D. O’Carroll, R.
    Stefl, P. Svoboda, Molecular Cell 82 (2022) 4064–4079.e13.
date_created: 2023-01-12T12:05:36Z
date_published: 2022-11-03T00:00:00Z
date_updated: 2023-08-04T08:57:17Z
day: '03'
ddc:
- '570'
department:
- _id: CaBe
doi: 10.1016/j.molcel.2022.10.010
external_id:
  isi:
  - '000898565300011'
  pmid:
  - '36332606'
file:
- access_level: open_access
  checksum: 999e443b54e4fdaa2542ca5a97619731
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-24T09:29:02Z
  date_updated: 2023-01-24T09:29:02Z
  file_id: '12354'
  file_name: 2022_MolecularCell_Zapletal.pdf
  file_size: 7368534
  relation: main_file
  success: 1
file_date_updated: 2023-01-24T09:29:02Z
has_accepted_license: '1'
intvolume: '        82'
isi: 1
issue: '21'
keyword:
- Cell Biology
- Molecular Biology
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 4064-4079.e13
pmid: 1
publication: Molecular Cell
publication_identifier:
  issn:
  - 1097-2765
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Structural and functional basis of mammalian microRNA biogenesis by Dicer
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 82
year: '2022'
...
---
_id: '12144'
abstract:
- lang: eng
  text: The phytohormone auxin is the major coordinative signal in plant development1,
    mediating transcriptional reprogramming by a well-established canonical signalling
    pathway. TRANSPORT INHIBITOR RESPONSE 1 (TIR1)/AUXIN-SIGNALING F-BOX (AFB) auxin
    receptors are F-box subunits of ubiquitin ligase complexes. In response to auxin,
    they associate with Aux/IAA transcriptional repressors and target them for degradation
    via ubiquitination2,3. Here we identify adenylate cyclase (AC) activity as an
    additional function of TIR1/AFB receptors across land plants. Auxin, together
    with Aux/IAAs, stimulates cAMP production. Three separate mutations in the AC
    motif of the TIR1 C-terminal region, all of which abolish the AC activity, each
    render TIR1 ineffective in mediating gravitropism and sustained auxin-induced
    root growth inhibition, and also affect auxin-induced transcriptional regulation.
    These results highlight the importance of TIR1/AFB AC activity in canonical auxin
    signalling. They also identify a unique phytohormone receptor cassette combining
    F-box and AC motifs, and the role of cAMP as a second messenger in plants.
acknowledged_ssus:
- _id: LifeSc
- _id: Bio
acknowledgement: This research was supported by the Lab Support Facility (LSF) and
  the Imaging and Optics Facility (IOF) of IST Austria. We thank C. Gehring for suggestions
  and advice; and K. U. Torii and G. Stacey for seeds and plasmids. This project was
  funded by a European Research Council Advanced Grant (ETAP-742985). M.F.K. and R.N.
  acknowledge the support of the EU MSCA-IF project CrysPINs (792329). M.K. was supported
  by the project POWR.03.05.00-00-Z302/17 Universitas Copernicana Thoruniensis in
  Futuro–IDS “Academia Copernicana”. CIDG acknowledges support from UKRI under Future
  Leaders Fellowship grant number MR/T020652/1.
article_processing_charge: No
article_type: original
author:
- first_name: Linlin
  full_name: Qi, Linlin
  id: 44B04502-A9ED-11E9-B6FC-583AE6697425
  last_name: Qi
  orcid: 0000-0001-5187-8401
- first_name: Mateusz
  full_name: Kwiatkowski, Mateusz
  last_name: Kwiatkowski
- first_name: Huihuang
  full_name: Chen, Huihuang
  id: 83c96512-15b2-11ec-abd3-b7eede36184f
  last_name: Chen
- first_name: Lukas
  full_name: Hörmayer, Lukas
  id: 2EEE7A2A-F248-11E8-B48F-1D18A9856A87
  last_name: Hörmayer
  orcid: 0000-0001-8295-2926
- first_name: Scott A
  full_name: Sinclair, Scott A
  id: 2D99FE6A-F248-11E8-B48F-1D18A9856A87
  last_name: Sinclair
  orcid: 0000-0002-4566-0593
- first_name: Minxia
  full_name: Zou, Minxia
  id: 5c243f41-03f3-11ec-841c-96faf48a7ef9
  last_name: Zou
- first_name: Charo I.
  full_name: del Genio, Charo I.
  last_name: del Genio
- first_name: Martin F.
  full_name: Kubeš, Martin F.
  last_name: Kubeš
- first_name: Richard
  full_name: Napier, Richard
  last_name: Napier
- first_name: Krzysztof
  full_name: Jaworski, Krzysztof
  last_name: Jaworski
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Qi L, Kwiatkowski M, Chen H, et al. Adenylate cyclase activity of TIR1/AFB
    auxin receptors in plants. <i>Nature</i>. 2022;611(7934):133-138. doi:<a href="https://doi.org/10.1038/s41586-022-05369-7">10.1038/s41586-022-05369-7</a>
  apa: Qi, L., Kwiatkowski, M., Chen, H., Hörmayer, L., Sinclair, S. A., Zou, M.,
    … Friml, J. (2022). Adenylate cyclase activity of TIR1/AFB auxin receptors in
    plants. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-022-05369-7">https://doi.org/10.1038/s41586-022-05369-7</a>
  chicago: Qi, Linlin, Mateusz Kwiatkowski, Huihuang Chen, Lukas Hörmayer, Scott A
    Sinclair, Minxia Zou, Charo I. del Genio, et al. “Adenylate Cyclase Activity of
    TIR1/AFB Auxin Receptors in Plants.” <i>Nature</i>. Springer Nature, 2022. <a
    href="https://doi.org/10.1038/s41586-022-05369-7">https://doi.org/10.1038/s41586-022-05369-7</a>.
  ieee: L. Qi <i>et al.</i>, “Adenylate cyclase activity of TIR1/AFB auxin receptors
    in plants,” <i>Nature</i>, vol. 611, no. 7934. Springer Nature, pp. 133–138, 2022.
  ista: Qi L, Kwiatkowski M, Chen H, Hörmayer L, Sinclair SA, Zou M, del Genio CI,
    Kubeš MF, Napier R, Jaworski K, Friml J. 2022. Adenylate cyclase activity of TIR1/AFB
    auxin receptors in plants. Nature. 611(7934), 133–138.
  mla: Qi, Linlin, et al. “Adenylate Cyclase Activity of TIR1/AFB Auxin Receptors
    in Plants.” <i>Nature</i>, vol. 611, no. 7934, Springer Nature, 2022, pp. 133–38,
    doi:<a href="https://doi.org/10.1038/s41586-022-05369-7">10.1038/s41586-022-05369-7</a>.
  short: L. Qi, M. Kwiatkowski, H. Chen, L. Hörmayer, S.A. Sinclair, M. Zou, C.I.
    del Genio, M.F. Kubeš, R. Napier, K. Jaworski, J. Friml, Nature 611 (2022) 133–138.
date_created: 2023-01-12T12:06:05Z
date_published: 2022-11-03T00:00:00Z
date_updated: 2023-10-03T11:04:53Z
day: '03'
department:
- _id: JiFr
doi: 10.1038/s41586-022-05369-7
ec_funded: 1
external_id:
  isi:
  - '000875061600013'
  pmid:
  - '36289340'
intvolume: '       611'
isi: 1
issue: '7934'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://wrap.warwick.ac.uk/168325/1/WRAP-denylate-cyclase-activity-TIR1-AFB-auxin-receptors-root-growth-22.pdf
month: '11'
oa: 1
oa_version: Submitted Version
page: 133-138
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Adenylate cyclase activity of TIR1/AFB auxin receptors in plants
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 611
year: '2022'
...
---
_id: '12145'
abstract:
- lang: eng
  text: In the class of strictly convex smooth boundaries each of which has no strip
    around its boundary foliated by invariant curves, we prove that the Taylor coefficients
    of the “normalized” Mather’s β-function are invariant under C∞-conjugacies. In
    contrast, we prove that any two elliptic billiard maps are C0-conjugate near their
    respective boundaries, and C∞-conjugate, near the boundary and away from a line
    passing through the center of the underlying ellipse. We also prove that, if the
    billiard maps corresponding to two ellipses are topologically conjugate, then
    the two ellipses are similar.
acknowledgement: "We are grateful to the anonymous referees for their careful reading
  and valuable remarks and\r\ncomments which helped to improve the paper significantly.
  We gratefully acknowledge support from the European Research Council (ERC) through
  the Advanced Grant “SPERIG” (#885707)."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Edmond
  full_name: Koudjinan, Edmond
  id: 52DF3E68-AEFA-11EA-95A4-124A3DDC885E
  last_name: Koudjinan
  orcid: 0000-0003-2640-4049
- first_name: Vadim
  full_name: Kaloshin, Vadim
  id: FE553552-CDE8-11E9-B324-C0EBE5697425
  last_name: Kaloshin
  orcid: 0000-0002-6051-2628
citation:
  ama: Koudjinan E, Kaloshin V. On some invariants of Birkhoff billiards under conjugacy.
    <i>Regular and Chaotic Dynamics</i>. 2022;27(6):525-537. doi:<a href="https://doi.org/10.1134/S1560354722050021">10.1134/S1560354722050021</a>
  apa: Koudjinan, E., &#38; Kaloshin, V. (2022). On some invariants of Birkhoff billiards
    under conjugacy. <i>Regular and Chaotic Dynamics</i>. Springer Nature. <a href="https://doi.org/10.1134/S1560354722050021">https://doi.org/10.1134/S1560354722050021</a>
  chicago: Koudjinan, Edmond, and Vadim Kaloshin. “On Some Invariants of Birkhoff
    Billiards under Conjugacy.” <i>Regular and Chaotic Dynamics</i>. Springer Nature,
    2022. <a href="https://doi.org/10.1134/S1560354722050021">https://doi.org/10.1134/S1560354722050021</a>.
  ieee: E. Koudjinan and V. Kaloshin, “On some invariants of Birkhoff billiards under
    conjugacy,” <i>Regular and Chaotic Dynamics</i>, vol. 27, no. 6. Springer Nature,
    pp. 525–537, 2022.
  ista: Koudjinan E, Kaloshin V. 2022. On some invariants of Birkhoff billiards under
    conjugacy. Regular and Chaotic Dynamics. 27(6), 525–537.
  mla: Koudjinan, Edmond, and Vadim Kaloshin. “On Some Invariants of Birkhoff Billiards
    under Conjugacy.” <i>Regular and Chaotic Dynamics</i>, vol. 27, no. 6, Springer
    Nature, 2022, pp. 525–37, doi:<a href="https://doi.org/10.1134/S1560354722050021">10.1134/S1560354722050021</a>.
  short: E. Koudjinan, V. Kaloshin, Regular and Chaotic Dynamics 27 (2022) 525–537.
date_created: 2023-01-12T12:06:49Z
date_published: 2022-10-03T00:00:00Z
date_updated: 2023-08-04T08:59:14Z
day: '03'
department:
- _id: VaKa
doi: 10.1134/S1560354722050021
ec_funded: 1
external_id:
  arxiv:
  - '2105.14640'
  isi:
  - '000865267300002'
intvolume: '        27'
isi: 1
issue: '6'
keyword:
- Mechanical Engineering
- Applied Mathematics
- Mathematical Physics
- Modeling and Simulation
- Statistical and Nonlinear Physics
- Mathematics (miscellaneous)
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2105.14640
month: '10'
oa: 1
oa_version: Preprint
page: 525-537
project:
- _id: 9B8B92DE-BA93-11EA-9121-9846C619BF3A
  call_identifier: H2020
  grant_number: '885707'
  name: Spectral rigidity and integrability for billiards and geodesic flows
publication: Regular and Chaotic Dynamics
publication_identifier:
  eissn:
  - 1468-4845
  issn:
  - 1560-3547
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1134/s1560354722060107
scopus_import: '1'
status: public
title: On some invariants of Birkhoff billiards under conjugacy
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 27
year: '2022'
...
---
_id: '12146'
abstract:
- lang: eng
  text: 'In this paper, we explore the stability and dynamical relevance of a wide
    variety of steady, time-periodic, quasiperiodic, and chaotic flows arising between
    orthogonally stretching parallel plates. We first explore the stability of all
    the steady flow solution families formerly identified by Ayats et al. [“Flows
    between orthogonally stretching parallel plates,” Phys. Fluids 33, 024103 (2021)],
    concluding that only the one that originates from the Stokesian approximation
    is actually stable. When both plates are shrinking at identical or nearly the
    same deceleration rates, this Stokesian flow exhibits a Hopf bifurcation that
    leads to stable time-periodic regimes. The resulting time-periodic orbits or flows
    are tracked for different Reynolds numbers and stretching rates while monitoring
    their Floquet exponents to identify secondary instabilities. It is found that
    these time-periodic flows also exhibit Neimark–Sacker bifurcations, generating
    stable quasiperiodic flows (tori) that may sometimes give rise to chaotic dynamics
    through a Ruelle–Takens–Newhouse scenario. However, chaotic dynamics is unusually
    observed, as the quasiperiodic flows generally become phase-locked through a resonance
    mechanism before a strange attractor may arise, thus restoring the time-periodicity
    of the flow. In this work, we have identified and tracked four different resonance
    regions, also known as Arnold tongues or horns. In particular, the 1 : 4 strong
    resonance region is explored in great detail, where the identified scenarios are
    in very good agreement with normal form theory. '
acknowledgement: "This work was supported by the Spanish MINECO under Grant Nos. FIS2017-85794-P
  and PRX18/00179, the Spanish MICINN through Grant No. PID2020-114043GB-I00, and
  the\r\nGeneralitat de Catalunya under Grant No. 2017-SGR-785. B.W.’s research was
  also supported by the Chinese Scholarship Council through Grant CSC No. 201806440152."
article_number: '114111'
article_processing_charge: No
article_type: original
author:
- first_name: B.
  full_name: Wang, B.
  last_name: Wang
- first_name: Roger
  full_name: Ayats López, Roger
  id: ab77522d-073b-11ed-8aff-e71b39258362
  last_name: Ayats López
  orcid: 0000-0001-6572-0621
- first_name: A.
  full_name: Meseguer, A.
  last_name: Meseguer
- first_name: F.
  full_name: Marques, F.
  last_name: Marques
citation:
  ama: Wang B, Ayats López R, Meseguer A, Marques F. Phase-locking flows between orthogonally
    stretching parallel plates. <i>Physics of Fluids</i>. 2022;34(11). doi:<a href="https://doi.org/10.1063/5.0124152">10.1063/5.0124152</a>
  apa: Wang, B., Ayats López, R., Meseguer, A., &#38; Marques, F. (2022). Phase-locking
    flows between orthogonally stretching parallel plates. <i>Physics of Fluids</i>.
    AIP Publishing. <a href="https://doi.org/10.1063/5.0124152">https://doi.org/10.1063/5.0124152</a>
  chicago: Wang, B., Roger Ayats López, A. Meseguer, and F. Marques. “Phase-Locking
    Flows between Orthogonally Stretching Parallel Plates.” <i>Physics of Fluids</i>.
    AIP Publishing, 2022. <a href="https://doi.org/10.1063/5.0124152">https://doi.org/10.1063/5.0124152</a>.
  ieee: B. Wang, R. Ayats López, A. Meseguer, and F. Marques, “Phase-locking flows
    between orthogonally stretching parallel plates,” <i>Physics of Fluids</i>, vol.
    34, no. 11. AIP Publishing, 2022.
  ista: Wang B, Ayats López R, Meseguer A, Marques F. 2022. Phase-locking flows between
    orthogonally stretching parallel plates. Physics of Fluids. 34(11), 114111.
  mla: Wang, B., et al. “Phase-Locking Flows between Orthogonally Stretching Parallel
    Plates.” <i>Physics of Fluids</i>, vol. 34, no. 11, 114111, AIP Publishing, 2022,
    doi:<a href="https://doi.org/10.1063/5.0124152">10.1063/5.0124152</a>.
  short: B. Wang, R. Ayats López, A. Meseguer, F. Marques, Physics of Fluids 34 (2022).
date_created: 2023-01-12T12:06:58Z
date_published: 2022-11-04T00:00:00Z
date_updated: 2023-10-03T11:07:58Z
day: '04'
department:
- _id: BjHo
doi: 10.1063/5.0124152
external_id:
  isi:
  - '000880665300024'
intvolume: '        34'
isi: 1
issue: '11'
keyword:
- Condensed Matter Physics
- Fluid Flow and Transfer Processes
- Mechanics of Materials
- Computational Mechanics
- Mechanical Engineering
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://upcommons.upc.edu/handle/2117/385635
month: '11'
oa: 1
oa_version: Submitted Version
publication: Physics of Fluids
publication_identifier:
  eissn:
  - 1089-7666
  issn:
  - 1070-6631
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Phase-locking flows between orthogonally stretching parallel plates
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 34
year: '2022'
...
---
_id: '12147'
abstract:
- lang: eng
  text: Continuous-time neural networks are a class of machine learning systems that
    can tackle representation learning on spatiotemporal decision-making tasks. These
    models are typically represented by continuous differential equations. However,
    their expressive power when they are deployed on computers is bottlenecked by
    numerical differential equation solvers. This limitation has notably slowed down
    the scaling and understanding of numerous natural physical phenomena such as the
    dynamics of nervous systems. Ideally, we would circumvent this bottleneck by solving
    the given dynamical system in closed form. This is known to be intractable in
    general. Here, we show that it is possible to closely approximate the interaction
    between neurons and synapses—the building blocks of natural and artificial neural
    networks—constructed by liquid time-constant networks efficiently in closed form.
    To this end, we compute a tightly bounded approximation of the solution of an
    integral appearing in liquid time-constant dynamics that has had no known closed-form
    solution so far. This closed-form solution impacts the design of continuous-time
    and continuous-depth neural models. For instance, since time appears explicitly
    in closed form, the formulation relaxes the need for complex numerical solvers.
    Consequently, we obtain models that are between one and five orders of magnitude
    faster in training and inference compared with differential equation-based counterparts.
    More importantly, in contrast to ordinary differential equation-based continuous
    networks, closed-form networks can scale remarkably well compared with other deep
    learning instances. Lastly, as these models are derived from liquid networks,
    they show good performance in time-series modelling compared with advanced recurrent
    neural network models.
acknowledgement: This research was supported in part by the AI2050 program at Schmidt
  Futures (grant G-22-63172), the Boeing Company, and the United States Air Force
  Research Laboratory and the United States Air Force Artificial Intelligence Accelerator
  and was accomplished under cooperative agreement number FA8750-19-2-1000. The views
  and conclusions contained in this document are those of the authors and should not
  be interpreted as representing the official policies, either expressed or implied,
  of the United States Air Force or the U.S. Government. The U.S. Government is authorized
  to reproduce and distribute reprints for Government purposes, notwithstanding any
  copyright notation herein. This work was further supported by The Boeing Company
  and Office of Naval Research grant N00014-18-1-2830. M.T. is supported by the Poul
  Due Jensen Foundation, grant 883901. M.L. was supported in part by the Austrian
  Science Fund under grant Z211-N23 (Wittgenstein Award). A.A. was supported by the
  National Science Foundation Graduate Research Fellowship Program. We thank T.-H.
  Wang, P. Kao, M. Chahine, W. Xiao, X. Li, L. Yin and Y. Ben for useful suggestions
  and for testing of CfC models to confirm the results across other domains.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Ramin
  full_name: Hasani, Ramin
  last_name: Hasani
- first_name: Mathias
  full_name: Lechner, Mathias
  id: 3DC22916-F248-11E8-B48F-1D18A9856A87
  last_name: Lechner
- first_name: Alexander
  full_name: Amini, Alexander
  last_name: Amini
- first_name: Lucas
  full_name: Liebenwein, Lucas
  last_name: Liebenwein
- first_name: Aaron
  full_name: Ray, Aaron
  last_name: Ray
- first_name: Max
  full_name: Tschaikowski, Max
  last_name: Tschaikowski
- first_name: Gerald
  full_name: Teschl, Gerald
  last_name: Teschl
- first_name: Daniela
  full_name: Rus, Daniela
  last_name: Rus
citation:
  ama: Hasani R, Lechner M, Amini A, et al. Closed-form continuous-time neural networks.
    <i>Nature Machine Intelligence</i>. 2022;4(11):992-1003. doi:<a href="https://doi.org/10.1038/s42256-022-00556-7">10.1038/s42256-022-00556-7</a>
  apa: Hasani, R., Lechner, M., Amini, A., Liebenwein, L., Ray, A., Tschaikowski,
    M., … Rus, D. (2022). Closed-form continuous-time neural networks. <i>Nature Machine
    Intelligence</i>. Springer Nature. <a href="https://doi.org/10.1038/s42256-022-00556-7">https://doi.org/10.1038/s42256-022-00556-7</a>
  chicago: Hasani, Ramin, Mathias Lechner, Alexander Amini, Lucas Liebenwein, Aaron
    Ray, Max Tschaikowski, Gerald Teschl, and Daniela Rus. “Closed-Form Continuous-Time
    Neural Networks.” <i>Nature Machine Intelligence</i>. Springer Nature, 2022. <a
    href="https://doi.org/10.1038/s42256-022-00556-7">https://doi.org/10.1038/s42256-022-00556-7</a>.
  ieee: R. Hasani <i>et al.</i>, “Closed-form continuous-time neural networks,” <i>Nature
    Machine Intelligence</i>, vol. 4, no. 11. Springer Nature, pp. 992–1003, 2022.
  ista: Hasani R, Lechner M, Amini A, Liebenwein L, Ray A, Tschaikowski M, Teschl
    G, Rus D. 2022. Closed-form continuous-time neural networks. Nature Machine Intelligence.
    4(11), 992–1003.
  mla: Hasani, Ramin, et al. “Closed-Form Continuous-Time Neural Networks.” <i>Nature
    Machine Intelligence</i>, vol. 4, no. 11, Springer Nature, 2022, pp. 992–1003,
    doi:<a href="https://doi.org/10.1038/s42256-022-00556-7">10.1038/s42256-022-00556-7</a>.
  short: R. Hasani, M. Lechner, A. Amini, L. Liebenwein, A. Ray, M. Tschaikowski,
    G. Teschl, D. Rus, Nature Machine Intelligence 4 (2022) 992–1003.
date_created: 2023-01-12T12:07:21Z
date_published: 2022-11-15T00:00:00Z
date_updated: 2023-08-04T09:00:10Z
day: '15'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1038/s42256-022-00556-7
external_id:
  arxiv:
  - '2106.13898'
  isi:
  - '000884215600003'
file:
- access_level: open_access
  checksum: b4789122ce04bfb4ac042390f59aaa8b
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-24T09:49:44Z
  date_updated: 2023-01-24T09:49:44Z
  file_id: '12355'
  file_name: 2022_NatureMachineIntelligence_Hasani.pdf
  file_size: 3259553
  relation: main_file
  success: 1
file_date_updated: 2023-01-24T09:49:44Z
has_accepted_license: '1'
intvolume: '         4'
isi: 1
issue: '11'
keyword:
- Artificial Intelligence
- Computer Networks and Communications
- Computer Vision and Pattern Recognition
- Human-Computer Interaction
- Software
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 992-1003
project:
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: The Wittgenstein Prize
publication: Nature Machine Intelligence
publication_identifier:
  issn:
  - 2522-5839
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1038/s42256-022-00597-y
scopus_import: '1'
status: public
title: Closed-form continuous-time neural networks
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 4
year: '2022'
...
---
_id: '12148'
abstract:
- lang: eng
  text: 'We prove a general local law for Wigner matrices that optimally handles observables
    of arbitrary rank and thus unifies the well-known averaged and isotropic local
    laws. As an application, we prove a central limit theorem in quantum unique ergodicity
    (QUE): that is, we show that the quadratic forms of a general deterministic matrix
    A on the bulk eigenvectors of a Wigner matrix have approximately Gaussian fluctuation.
    For the bulk spectrum, we thus generalise our previous result [17] as valid for
    test matrices A of large rank as well as the result of Benigni and Lopatto [7]
    as valid for specific small-rank observables.'
acknowledgement: L.E. acknowledges support by ERC Advanced Grant ‘RMTBeyond’ No. 101020331.
  D.S. acknowledges the support of Dr. Max Rössler, the Walter Haefner Foundation
  and the ETH Zürich Foundation.
article_number: e96
article_processing_charge: No
article_type: original
author:
- first_name: Giorgio
  full_name: Cipolloni, Giorgio
  id: 42198EFA-F248-11E8-B48F-1D18A9856A87
  last_name: Cipolloni
  orcid: 0000-0002-4901-7992
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Dominik J
  full_name: Schröder, Dominik J
  id: 408ED176-F248-11E8-B48F-1D18A9856A87
  last_name: Schröder
  orcid: 0000-0002-2904-1856
citation:
  ama: Cipolloni G, Erdös L, Schröder DJ. Rank-uniform local law for Wigner matrices.
    <i>Forum of Mathematics, Sigma</i>. 2022;10. doi:<a href="https://doi.org/10.1017/fms.2022.86">10.1017/fms.2022.86</a>
  apa: Cipolloni, G., Erdös, L., &#38; Schröder, D. J. (2022). Rank-uniform local
    law for Wigner matrices. <i>Forum of Mathematics, Sigma</i>. Cambridge University
    Press. <a href="https://doi.org/10.1017/fms.2022.86">https://doi.org/10.1017/fms.2022.86</a>
  chicago: Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Rank-Uniform
    Local Law for Wigner Matrices.” <i>Forum of Mathematics, Sigma</i>. Cambridge
    University Press, 2022. <a href="https://doi.org/10.1017/fms.2022.86">https://doi.org/10.1017/fms.2022.86</a>.
  ieee: G. Cipolloni, L. Erdös, and D. J. Schröder, “Rank-uniform local law for Wigner
    matrices,” <i>Forum of Mathematics, Sigma</i>, vol. 10. Cambridge University Press,
    2022.
  ista: Cipolloni G, Erdös L, Schröder DJ. 2022. Rank-uniform local law for Wigner
    matrices. Forum of Mathematics, Sigma. 10, e96.
  mla: Cipolloni, Giorgio, et al. “Rank-Uniform Local Law for Wigner Matrices.” <i>Forum
    of Mathematics, Sigma</i>, vol. 10, e96, Cambridge University Press, 2022, doi:<a
    href="https://doi.org/10.1017/fms.2022.86">10.1017/fms.2022.86</a>.
  short: G. Cipolloni, L. Erdös, D.J. Schröder, Forum of Mathematics, Sigma 10 (2022).
date_created: 2023-01-12T12:07:30Z
date_published: 2022-10-27T00:00:00Z
date_updated: 2023-08-04T09:00:35Z
day: '27'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.1017/fms.2022.86
ec_funded: 1
external_id:
  isi:
  - '000873719200001'
file:
- access_level: open_access
  checksum: 94a049aeb1eea5497aa097712a73c400
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-24T10:02:40Z
  date_updated: 2023-01-24T10:02:40Z
  file_id: '12356'
  file_name: 2022_ForumMath_Cipolloni.pdf
  file_size: 817089
  relation: main_file
  success: 1
file_date_updated: 2023-01-24T10:02:40Z
has_accepted_license: '1'
intvolume: '        10'
isi: 1
keyword:
- Computational Mathematics
- Discrete Mathematics and Combinatorics
- Geometry and Topology
- Mathematical Physics
- Statistics and Probability
- Algebra and Number Theory
- Theoretical Computer Science
- Analysis
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 62796744-2b32-11ec-9570-940b20777f1d
  call_identifier: H2020
  grant_number: '101020331'
  name: Random matrices beyond Wigner-Dyson-Mehta
publication: Forum of Mathematics, Sigma
publication_identifier:
  issn:
  - 2050-5094
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Rank-uniform local law for Wigner matrices
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 10
year: '2022'
...
---
_id: '12278'
abstract:
- lang: eng
  text: Mercury telluride (HgTe) thin films with a critical thickness of 6.5 nm are
    predicted to possess a gapless Dirac-like band structure. We report a comprehensive
    study on gated and optically doped samples by magnetooptical spectroscopy in the
    THz range. The quasi-classical analysis of the cyclotron resonance allowed the
    mapping of the band dispersion of Dirac charge carriers in a broad range of electron
    and hole doping. A smooth transition through the charge neutrality point between
    Dirac holes and electrons was observed. An additional peak coming from a second
    type of holes with an almost density-independent mass of around 0.04m0 was detected
    in the hole-doping range and attributed to an asymmetric spin splitting of the
    Dirac cone. Spectroscopic evidence for disorder-induced band energy fluctuations
    could not be detected in present cyclotron resonance experiments.
acknowledgement: "This work was supported by the Austrian Science Funds (W1243, I
  3456-N27, I 5539-N).\r\nOpen Access Funding by the Austrian Science Fund (FWF)."
article_number: '2492'
article_processing_charge: Yes
article_type: original
author:
- first_name: Alexey
  full_name: Shuvaev, Alexey
  last_name: Shuvaev
- first_name: Uladzislau
  full_name: Dziom, Uladzislau
  id: 6A9A37C2-8C5C-11E9-AE53-F2FDE5697425
  last_name: Dziom
  orcid: 0000-0002-1648-0999
- first_name: Jan
  full_name: Gospodarič, Jan
  last_name: Gospodarič
- first_name: Elena G.
  full_name: Novik, Elena G.
  last_name: Novik
- first_name: Alena A.
  full_name: Dobretsova, Alena A.
  last_name: Dobretsova
- first_name: Nikolay N.
  full_name: Mikhailov, Nikolay N.
  last_name: Mikhailov
- first_name: Ze Don
  full_name: Kvon, Ze Don
  last_name: Kvon
- first_name: Andrei
  full_name: Pimenov, Andrei
  last_name: Pimenov
citation:
  ama: Shuvaev A, Dziom U, Gospodarič J, et al. Band structure near the Dirac Point
    in HgTe quantum wells with critical thickness. <i>Nanomaterials</i>. 2022;12(14).
    doi:<a href="https://doi.org/10.3390/nano12142492">10.3390/nano12142492</a>
  apa: Shuvaev, A., Dziom, U., Gospodarič, J., Novik, E. G., Dobretsova, A. A., Mikhailov,
    N. N., … Pimenov, A. (2022). Band structure near the Dirac Point in HgTe quantum
    wells with critical thickness. <i>Nanomaterials</i>. MDPI. <a href="https://doi.org/10.3390/nano12142492">https://doi.org/10.3390/nano12142492</a>
  chicago: Shuvaev, Alexey, Uladzislau Dziom, Jan Gospodarič, Elena G. Novik, Alena
    A. Dobretsova, Nikolay N. Mikhailov, Ze Don Kvon, and Andrei Pimenov. “Band Structure
    near the Dirac Point in HgTe Quantum Wells with Critical Thickness.” <i>Nanomaterials</i>.
    MDPI, 2022. <a href="https://doi.org/10.3390/nano12142492">https://doi.org/10.3390/nano12142492</a>.
  ieee: A. Shuvaev <i>et al.</i>, “Band structure near the Dirac Point in HgTe quantum
    wells with critical thickness,” <i>Nanomaterials</i>, vol. 12, no. 14. MDPI, 2022.
  ista: Shuvaev A, Dziom U, Gospodarič J, Novik EG, Dobretsova AA, Mikhailov NN, Kvon
    ZD, Pimenov A. 2022. Band structure near the Dirac Point in HgTe quantum wells
    with critical thickness. Nanomaterials. 12(14), 2492.
  mla: Shuvaev, Alexey, et al. “Band Structure near the Dirac Point in HgTe Quantum
    Wells with Critical Thickness.” <i>Nanomaterials</i>, vol. 12, no. 14, 2492, MDPI,
    2022, doi:<a href="https://doi.org/10.3390/nano12142492">10.3390/nano12142492</a>.
  short: A. Shuvaev, U. Dziom, J. Gospodarič, E.G. Novik, A.A. Dobretsova, N.N. Mikhailov,
    Z.D. Kvon, A. Pimenov, Nanomaterials 12 (2022).
date_created: 2023-01-16T10:02:31Z
date_published: 2022-07-20T00:00:00Z
date_updated: 2026-07-02T09:51:59Z
day: '20'
ddc:
- '530'
department:
- _id: ZhAl
doi: 10.3390/nano12142492
external_id:
  isi:
  - '000834401600001'
file:
- access_level: open_access
  checksum: efad6742f89f39a18bec63116dd689a0
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-30T11:16:54Z
  date_updated: 2023-01-30T11:16:54Z
  file_id: '12459'
  file_name: 2022_Nanomaterials_Shuvaev.pdf
  file_size: 464840
  relation: main_file
  success: 1
file_date_updated: 2023-01-30T11:16:54Z
has_accepted_license: '1'
intvolume: '        12'
isi: 1
issue: '14'
keyword:
- General Materials Science
- General Chemical Engineering
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: Nanomaterials
publication_identifier:
  issn:
  - 2079-4991
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Band structure near the Dirac Point in HgTe quantum wells with critical thickness
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2022'
...
---
_id: '12151'
abstract:
- lang: eng
  text: The k-sample G(k,W) from a graphon W:[0,1]2→[0,1] is the random graph on {1,…,k},
    where we sample x1,…,xk∈[0,1] uniformly at random and make each pair {i,j}⊆{1,…,k}
    an edge with probability W(xi,xj), with all these choices being mutually independent.
    Let the random variable Xk(W) be the number of edges in  G(k,W). Vera T. Sós asked
    in 2012 whether two graphons U, W are necessarily weakly isomorphic if the random
    variables Xk(U) and Xk(W) have the same distribution for every integer k≥2. This
    question when one of the graphons W is a constant function was answered positively
    by Endre Csóka and independently by Jacob Fox, Tomasz Łuczak and Vera T. Sós.
    Here we investigate the question when W is a 2-step graphon and prove that the
    answer is positive for a 3-dimensional family of such graphons. We also present
    some related results.
acknowledgement: "Supported by Austrian Science Fund (FWF) Grant I3747. Supported
  by ERC Advanced Grant 101020255 and Leverhulme Research Project Grant RPG-2018-424.\r\nAn
  extended abstract of this paper appeared in the Proceedings of the European Conference\r\non
  Combinatorics, Graph Theory and Applications (EuroComb 2021), CRM Research Perspectives,
  Springer."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Oliver
  full_name: Cooley, Oliver
  id: 43f4ddd0-a46b-11ec-8df6-ef3703bd721d
  last_name: Cooley
- first_name: M.
  full_name: Kang, M.
  last_name: Kang
- first_name: O.
  full_name: Pikhurko, O.
  last_name: Pikhurko
citation:
  ama: Cooley O, Kang M, Pikhurko O. On a question of Vera T. Sós about size forcing
    of graphons. <i>Acta Mathematica Hungarica</i>. 2022;168:1-26. doi:<a href="https://doi.org/10.1007/s10474-022-01265-8">10.1007/s10474-022-01265-8</a>
  apa: Cooley, O., Kang, M., &#38; Pikhurko, O. (2022). On a question of Vera T. Sós
    about size forcing of graphons. <i>Acta Mathematica Hungarica</i>. Springer Nature.
    <a href="https://doi.org/10.1007/s10474-022-01265-8">https://doi.org/10.1007/s10474-022-01265-8</a>
  chicago: Cooley, Oliver, M. Kang, and O. Pikhurko. “On a Question of Vera T. Sós
    about Size Forcing of Graphons.” <i>Acta Mathematica Hungarica</i>. Springer Nature,
    2022. <a href="https://doi.org/10.1007/s10474-022-01265-8">https://doi.org/10.1007/s10474-022-01265-8</a>.
  ieee: O. Cooley, M. Kang, and O. Pikhurko, “On a question of Vera T. Sós about size
    forcing of graphons,” <i>Acta Mathematica Hungarica</i>, vol. 168. Springer Nature,
    pp. 1–26, 2022.
  ista: Cooley O, Kang M, Pikhurko O. 2022. On a question of Vera T. Sós about size
    forcing of graphons. Acta Mathematica Hungarica. 168, 1–26.
  mla: Cooley, Oliver, et al. “On a Question of Vera T. Sós about Size Forcing of
    Graphons.” <i>Acta Mathematica Hungarica</i>, vol. 168, Springer Nature, 2022,
    pp. 1–26, doi:<a href="https://doi.org/10.1007/s10474-022-01265-8">10.1007/s10474-022-01265-8</a>.
  short: O. Cooley, M. Kang, O. Pikhurko, Acta Mathematica Hungarica 168 (2022) 1–26.
das_tickbox: '1'
date_created: 2023-01-12T12:07:59Z
date_published: 2022-11-23T00:00:00Z
date_updated: 2026-06-18T07:57:21Z
day: '23'
ddc:
- '500'
department:
- _id: MaKw
doi: 10.1007/s10474-022-01265-8
external_id:
  arxiv:
  - '2103.09114'
  isi:
  - '000886839900006'
intvolume: '       168'
isi: 1
keyword:
- graphon
- k-sample
- graphon forcing
- graph container
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2103.09114'
month: '11'
oa: 1
oa_version: Preprint
page: 1-26
publication: Acta Mathematica Hungarica
publication_identifier:
  eissn:
  - 1588-2632
  issn:
  - 0236-5294
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: On a question of Vera T. Sós about size forcing of graphons
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 168
year: '2022'
...
---
_id: '11737'
abstract:
- lang: eng
  text: Spin-orbit coupling in thin HgTe quantum wells results in a relativistic-like
    electron band structure, making it a versatile solid state platform to observe
    and control nontrivial electrodynamic phenomena. Here we report an observation
    of universal terahertz (THz) transparency determined by fine-structure constant
    α≈1/137 in 6.5-nm-thick HgTe layer, close to the critical thickness separating
    phases with topologically different electronic band structure. Using THz spectroscopy
    in a magnetic field we obtain direct evidence of asymmetric spin splitting of
    the Dirac cone. This particle-hole asymmetry facilitates optical control of edge
    spin currents in the quantum wells.
acknowledgement: This work was supported by the Austrian Science Funds (W 1243, I
  3456-N27, I 5539-N).
article_number: '045302'
article_processing_charge: No
article_type: original
author:
- first_name: Uladzislau
  full_name: Dziom, Uladzislau
  id: 6A9A37C2-8C5C-11E9-AE53-F2FDE5697425
  last_name: Dziom
  orcid: 0000-0002-1648-0999
- first_name: A.
  full_name: Shuvaev, A.
  last_name: Shuvaev
- first_name: J.
  full_name: Gospodarič, J.
  last_name: Gospodarič
- first_name: E. G.
  full_name: Novik, E. G.
  last_name: Novik
- first_name: A. A.
  full_name: Dobretsova, A. A.
  last_name: Dobretsova
- first_name: N. N.
  full_name: Mikhailov, N. N.
  last_name: Mikhailov
- first_name: Z. D.
  full_name: Kvon, Z. D.
  last_name: Kvon
- first_name: Zhanybek
  full_name: Alpichshev, Zhanybek
  id: 45E67A2A-F248-11E8-B48F-1D18A9856A87
  last_name: Alpichshev
  orcid: 0000-0002-7183-5203
- first_name: A.
  full_name: Pimenov, A.
  last_name: Pimenov
citation:
  ama: Dziom U, Shuvaev A, Gospodarič J, et al. Universal transparency and asymmetric
    spin splitting near the Dirac point in HgTe quantum wells. <i>Physical Review
    B</i>. 2022;106(4). doi:<a href="https://doi.org/10.1103/PhysRevB.106.045302">10.1103/PhysRevB.106.045302</a>
  apa: Dziom, U., Shuvaev, A., Gospodarič, J., Novik, E. G., Dobretsova, A. A., Mikhailov,
    N. N., … Pimenov, A. (2022). Universal transparency and asymmetric spin splitting
    near the Dirac point in HgTe quantum wells. <i>Physical Review B</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevB.106.045302">https://doi.org/10.1103/PhysRevB.106.045302</a>
  chicago: Dziom, Uladzislau, A. Shuvaev, J. Gospodarič, E. G. Novik, A. A. Dobretsova,
    N. N. Mikhailov, Z. D. Kvon, Zhanybek Alpichshev, and A. Pimenov. “Universal Transparency
    and Asymmetric Spin Splitting near the Dirac Point in HgTe Quantum Wells.” <i>Physical
    Review B</i>. American Physical Society, 2022. <a href="https://doi.org/10.1103/PhysRevB.106.045302">https://doi.org/10.1103/PhysRevB.106.045302</a>.
  ieee: U. Dziom <i>et al.</i>, “Universal transparency and asymmetric spin splitting
    near the Dirac point in HgTe quantum wells,” <i>Physical Review B</i>, vol. 106,
    no. 4. American Physical Society, 2022.
  ista: Dziom U, Shuvaev A, Gospodarič J, Novik EG, Dobretsova AA, Mikhailov NN, Kvon
    ZD, Alpichshev Z, Pimenov A. 2022. Universal transparency and asymmetric spin
    splitting near the Dirac point in HgTe quantum wells. Physical Review B. 106(4),
    045302.
  mla: Dziom, Uladzislau, et al. “Universal Transparency and Asymmetric Spin Splitting
    near the Dirac Point in HgTe Quantum Wells.” <i>Physical Review B</i>, vol. 106,
    no. 4, 045302, American Physical Society, 2022, doi:<a href="https://doi.org/10.1103/PhysRevB.106.045302">10.1103/PhysRevB.106.045302</a>.
  short: U. Dziom, A. Shuvaev, J. Gospodarič, E.G. Novik, A.A. Dobretsova, N.N. Mikhailov,
    Z.D. Kvon, Z. Alpichshev, A. Pimenov, Physical Review B 106 (2022).
date_created: 2022-08-07T22:01:58Z
date_published: 2022-07-15T00:00:00Z
date_updated: 2026-07-02T09:51:59Z
day: '15'
ddc:
- '530'
department:
- _id: ZhAl
doi: 10.1103/PhysRevB.106.045302
external_id:
  isi:
  - '000834349200010'
file:
- access_level: open_access
  checksum: 115aff9e0cde2f806cb26953d7262791
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-08T06:58:22Z
  date_updated: 2022-08-08T06:58:22Z
  file_id: '11743'
  file_name: 2022_PhysRevB_Dziom.pdf
  file_size: 774455
  relation: main_file
  success: 1
file_date_updated: 2022-08-08T06:58:22Z
has_accepted_license: '1'
intvolume: '       106'
isi: 1
issue: '4'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: Physical Review B
publication_identifier:
  eissn:
  - 2469-9969
  issn:
  - 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Universal transparency and asymmetric spin splitting near the Dirac point in
  HgTe quantum wells
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 106
year: '2022'
...
---
_id: '12308'
abstract:
- lang: eng
  text: Let P and Q be two points on an elliptic curve defined over a number field
    K. For α∈End(E), define Bα to be the OK-integral ideal generated by the denominator
    of x(α(P)+Q). Let O be a subring of End(E), that is a Dedekind domain. We will
    study the sequence {Bα}α∈O. We will show that, for all but finitely many α∈O,
    the ideal Bα has a primitive divisor when P is a non-torsion point and there exist
    two endomorphisms g≠0 and f so that f(P)=g(Q). This is a generalization of previous
    results on elliptic divisibility sequences.
article_number: '37'
article_processing_charge: No
article_type: original
author:
- first_name: Matteo
  full_name: Verzobio, Matteo
  id: 7aa8f170-131e-11ed-88e1-a9efd01027cb
  last_name: Verzobio
  orcid: 0000-0002-0854-0306
citation:
  ama: Verzobio M. Primitive divisors of sequences associated to elliptic curves with
    complex multiplication. <i>Research in Number Theory</i>. 2021;7(2). doi:<a href="https://doi.org/10.1007/s40993-021-00267-9">10.1007/s40993-021-00267-9</a>
  apa: Verzobio, M. (2021). Primitive divisors of sequences associated to elliptic
    curves with complex multiplication. <i>Research in Number Theory</i>. Springer
    Nature. <a href="https://doi.org/10.1007/s40993-021-00267-9">https://doi.org/10.1007/s40993-021-00267-9</a>
  chicago: Verzobio, Matteo. “Primitive Divisors of Sequences Associated to Elliptic
    Curves with Complex Multiplication.” <i>Research in Number Theory</i>. Springer
    Nature, 2021. <a href="https://doi.org/10.1007/s40993-021-00267-9">https://doi.org/10.1007/s40993-021-00267-9</a>.
  ieee: M. Verzobio, “Primitive divisors of sequences associated to elliptic curves
    with complex multiplication,” <i>Research in Number Theory</i>, vol. 7, no. 2.
    Springer Nature, 2021.
  ista: Verzobio M. 2021. Primitive divisors of sequences associated to elliptic curves
    with complex multiplication. Research in Number Theory. 7(2), 37.
  mla: Verzobio, Matteo. “Primitive Divisors of Sequences Associated to Elliptic Curves
    with Complex Multiplication.” <i>Research in Number Theory</i>, vol. 7, no. 2,
    37, Springer Nature, 2021, doi:<a href="https://doi.org/10.1007/s40993-021-00267-9">10.1007/s40993-021-00267-9</a>.
  short: M. Verzobio, Research in Number Theory 7 (2021).
date_created: 2023-01-16T11:44:39Z
date_published: 2021-05-20T00:00:00Z
date_updated: 2023-05-08T12:00:17Z
day: '20'
doi: 10.1007/s40993-021-00267-9
extern: '1'
intvolume: '         7'
issue: '2'
keyword:
- Algebra and Number Theory
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1007/s40993-021-00267-9
month: '05'
oa: 1
oa_version: Published Version
publication: Research in Number Theory
publication_identifier:
  issn:
  - 2522-0160
  - 2363-9555
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Primitive divisors of sequences associated to elliptic curves with complex
  multiplication
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2021'
...
---
_id: '12309'
abstract:
- lang: eng
  text: Take a rational elliptic curve defined by the equation y2=x3+ax in minimal
    form and consider the sequence Bn of the denominators of the abscissas of the
    iterate of a non-torsion point. We show that B5m has a primitive divisor for every
    m. Then, we show how to generalize this method to the terms of the form Bmp with
    p a prime congruent to 1 modulo 4.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Matteo
  full_name: Verzobio, Matteo
  id: 7aa8f170-131e-11ed-88e1-a9efd01027cb
  last_name: Verzobio
  orcid: 0000-0002-0854-0306
citation:
  ama: Verzobio M. Primitive divisors of elliptic divisibility sequences for elliptic
    curves with j=1728. <i>Acta Arithmetica</i>. 2021;198(2):129-168. doi:<a href="https://doi.org/10.4064/aa191016-30-7">10.4064/aa191016-30-7</a>
  apa: Verzobio, M. (2021). Primitive divisors of elliptic divisibility sequences
    for elliptic curves with j=1728. <i>Acta Arithmetica</i>. Institute of Mathematics,
    Polish Academy of Sciences. <a href="https://doi.org/10.4064/aa191016-30-7">https://doi.org/10.4064/aa191016-30-7</a>
  chicago: Verzobio, Matteo. “Primitive Divisors of Elliptic Divisibility Sequences
    for Elliptic Curves with J=1728.” <i>Acta Arithmetica</i>. Institute of Mathematics,
    Polish Academy of Sciences, 2021. <a href="https://doi.org/10.4064/aa191016-30-7">https://doi.org/10.4064/aa191016-30-7</a>.
  ieee: M. Verzobio, “Primitive divisors of elliptic divisibility sequences for elliptic
    curves with j=1728,” <i>Acta Arithmetica</i>, vol. 198, no. 2. Institute of Mathematics,
    Polish Academy of Sciences, pp. 129–168, 2021.
  ista: Verzobio M. 2021. Primitive divisors of elliptic divisibility sequences for
    elliptic curves with j=1728. Acta Arithmetica. 198(2), 129–168.
  mla: Verzobio, Matteo. “Primitive Divisors of Elliptic Divisibility Sequences for
    Elliptic Curves with J=1728.” <i>Acta Arithmetica</i>, vol. 198, no. 2, Institute
    of Mathematics, Polish Academy of Sciences, 2021, pp. 129–68, doi:<a href="https://doi.org/10.4064/aa191016-30-7">10.4064/aa191016-30-7</a>.
  short: M. Verzobio, Acta Arithmetica 198 (2021) 129–168.
date_created: 2023-01-16T11:44:54Z
date_published: 2021-01-04T00:00:00Z
date_updated: 2023-05-08T11:58:14Z
day: '04'
doi: 10.4064/aa191016-30-7
extern: '1'
external_id:
  arxiv:
  - '2001.09634'
intvolume: '       198'
issue: '2'
keyword:
- Algebra and Number Theory
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2001.09634
month: '01'
oa: 1
oa_version: Preprint
page: 129-168
publication: Acta Arithmetica
publication_identifier:
  issn:
  - 0065-1036
  - 1730-6264
publication_status: published
publisher: Institute of Mathematics, Polish Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Primitive divisors of elliptic divisibility sequences for elliptic curves with
  j=1728
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 198
year: '2021'
...
---
_id: '12314'
abstract:
- lang: eng
  text: "In literature, there are two different definitions of elliptic divisibility\r\nsequences.
    The first one says that a sequence of integers $\\{h_n\\}_{n\\geq 0}$\r\nis an
    elliptic divisibility sequence if it verifies the recurrence relation\r\n$h_{m+n}h_{m-n}h_{r}^2=h_{m+r}h_{m-r}h_{n}^2-h_{n+r}h_{n-r}h_{m}^2$
    for every\r\nnatural number $m\\geq n\\geq r$. The second definition says that
    a sequence of\r\nintegers $\\{\\beta_n\\}_{n\\geq 0}$ is an elliptic divisibility
    sequence if it is\r\nthe sequence of the square roots (chosen with an appropriate
    sign) of the\r\ndenominators of the abscissas of the iterates of a point on a
    rational elliptic\r\ncurve. It is well-known that the two sequences are not equivalent.
    Hence, given\r\na sequence of the denominators $\\{\\beta_n\\}_{n\\geq 0}$, in
    general does not\r\nhold\r\n$\\beta_{m+n}\\beta_{m-n}\\beta_{r}^2=\\beta_{m+r}\\beta_{m-r}\\beta_{n}^2-\\beta_{n+r}\\beta_{n-r}\\beta_{m}^2$\r\nfor
    $m\\geq n\\geq r$. We will prove that the recurrence relation above holds for\r\n$\\{\\beta_n\\}_{n\\geq
    0}$ under some conditions on the indexes $m$, $n$, and $r$."
article_number: '2102.07573'
article_processing_charge: No
arxiv: 1
author:
- first_name: Matteo
  full_name: Verzobio, Matteo
  id: 7aa8f170-131e-11ed-88e1-a9efd01027cb
  last_name: Verzobio
  orcid: 0000-0002-0854-0306
citation:
  ama: Verzobio M. A recurrence relation for elliptic divisibility sequences. <i>arXiv</i>.
    doi:<a href="https://doi.org/10.48550/arXiv.2102.07573">10.48550/arXiv.2102.07573</a>
  apa: Verzobio, M. (n.d.). A recurrence relation for elliptic divisibility sequences.
    <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2102.07573">https://doi.org/10.48550/arXiv.2102.07573</a>
  chicago: Verzobio, Matteo. “A Recurrence Relation for Elliptic Divisibility Sequences.”
    <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2102.07573">https://doi.org/10.48550/arXiv.2102.07573</a>.
  ieee: M. Verzobio, “A recurrence relation for elliptic divisibility sequences,”
    <i>arXiv</i>. .
  ista: Verzobio M. A recurrence relation for elliptic divisibility sequences. arXiv,
    2102.07573.
  mla: Verzobio, Matteo. “A Recurrence Relation for Elliptic Divisibility Sequences.”
    <i>ArXiv</i>, 2102.07573, doi:<a href="https://doi.org/10.48550/arXiv.2102.07573">10.48550/arXiv.2102.07573</a>.
  short: M. Verzobio, ArXiv (n.d.).
date_created: 2023-01-16T11:46:36Z
date_published: 2021-02-15T00:00:00Z
date_updated: 2023-02-21T10:22:57Z
day: '15'
doi: 10.48550/arXiv.2102.07573
extern: '1'
external_id:
  arxiv:
  - '2102.07573'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2102.07573'
month: '02'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
status: public
title: A recurrence relation for elliptic divisibility sequences
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '12583'
abstract:
- lang: eng
  text: Peruvian glaciers are important contributors to dry season runoff for agriculture
    and hydropower, but they are at risk of disappearing due to climate change. We
    applied a physically based, energy balance melt model at five on-glacier sites
    within the Peruvian Cordilleras Blanca and Vilcanota. Net shortwave radiation
    dominates the energy balance, and despite this flux being higher in the dry season,
    melt rates are lower due to losses from net longwave radiation and the latent
    heat flux. The sensible heat flux is a relatively small contributor to melt energy.
    At three of the sites the wet season snowpack was discontinuous, forming and melting
    within a daily to weekly timescale, and resulting in highly variable melt rates
    closely related to precipitation dynamics. Cold air temperatures due to a strong
    La Niña year at Shallap Glacier (Cordillera Blanca) resulted in a continuous wet
    season snowpack, significantly reducing wet season ablation. Sublimation was most
    important at the highest site in the accumulation zone of the Quelccaya Ice Cap
    (Cordillera Vilcanota), accounting for 81% of ablation, compared to 2%–4% for
    the other sites. Air temperature and precipitation inputs were perturbed to investigate
    the climate sensitivity of the five glaciers. At the lower sites warmer air temperatures
    resulted in a switch from snowfall to rain, so that ablation was increased via
    the decrease in albedo and increase in net shortwave radiation. At the top of
    Quelccaya Ice Cap warming caused melting to replace sublimation so that ablation
    increased nonlinearly with air temperature.
article_number: e2021JD034911
article_processing_charge: No
article_type: original
author:
- first_name: Catriona L.
  full_name: Fyffe, Catriona L.
  last_name: Fyffe
- first_name: Emily
  full_name: Potter, Emily
  last_name: Potter
- first_name: Stefan
  full_name: Fugger, Stefan
  last_name: Fugger
- first_name: Andrew
  full_name: Orr, Andrew
  last_name: Orr
- first_name: Simone
  full_name: Fatichi, Simone
  last_name: Fatichi
- first_name: Edwin
  full_name: Loarte, Edwin
  last_name: Loarte
- first_name: Katy
  full_name: Medina, Katy
  last_name: Medina
- first_name: Robert Å.
  full_name: Hellström, Robert Å.
  last_name: Hellström
- first_name: Maud
  full_name: Bernat, Maud
  last_name: Bernat
- first_name: Caroline
  full_name: Aubry‐Wake, Caroline
  last_name: Aubry‐Wake
- first_name: Wolfgang
  full_name: Gurgiser, Wolfgang
  last_name: Gurgiser
- first_name: L. Baker
  full_name: Perry, L. Baker
  last_name: Perry
- first_name: Wilson
  full_name: Suarez, Wilson
  last_name: Suarez
- first_name: Duncan J.
  full_name: Quincey, Duncan J.
  last_name: Quincey
- first_name: Francesca
  full_name: Pellicciotti, Francesca
  id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
  last_name: Pellicciotti
citation:
  ama: 'Fyffe CL, Potter E, Fugger S, et al. The energy and mass balance of Peruvian
    Glaciers. <i>Journal of Geophysical Research: Atmospheres</i>. 2021;126(23). doi:<a
    href="https://doi.org/10.1029/2021jd034911">10.1029/2021jd034911</a>'
  apa: 'Fyffe, C. L., Potter, E., Fugger, S., Orr, A., Fatichi, S., Loarte, E., …
    Pellicciotti, F. (2021). The energy and mass balance of Peruvian Glaciers. <i>Journal
    of Geophysical Research: Atmospheres</i>. American Geophysical Union. <a href="https://doi.org/10.1029/2021jd034911">https://doi.org/10.1029/2021jd034911</a>'
  chicago: 'Fyffe, Catriona L., Emily Potter, Stefan Fugger, Andrew Orr, Simone Fatichi,
    Edwin Loarte, Katy Medina, et al. “The Energy and Mass Balance of Peruvian Glaciers.”
    <i>Journal of Geophysical Research: Atmospheres</i>. American Geophysical Union,
    2021. <a href="https://doi.org/10.1029/2021jd034911">https://doi.org/10.1029/2021jd034911</a>.'
  ieee: 'C. L. Fyffe <i>et al.</i>, “The energy and mass balance of Peruvian Glaciers,”
    <i>Journal of Geophysical Research: Atmospheres</i>, vol. 126, no. 23. American
    Geophysical Union, 2021.'
  ista: 'Fyffe CL, Potter E, Fugger S, Orr A, Fatichi S, Loarte E, Medina K, Hellström
    RÅ, Bernat M, Aubry‐Wake C, Gurgiser W, Perry LB, Suarez W, Quincey DJ, Pellicciotti
    F. 2021. The energy and mass balance of Peruvian Glaciers. Journal of Geophysical
    Research: Atmospheres. 126(23), e2021JD034911.'
  mla: 'Fyffe, Catriona L., et al. “The Energy and Mass Balance of Peruvian Glaciers.”
    <i>Journal of Geophysical Research: Atmospheres</i>, vol. 126, no. 23, e2021JD034911,
    American Geophysical Union, 2021, doi:<a href="https://doi.org/10.1029/2021jd034911">10.1029/2021jd034911</a>.'
  short: 'C.L. Fyffe, E. Potter, S. Fugger, A. Orr, S. Fatichi, E. Loarte, K. Medina,
    R.Å. Hellström, M. Bernat, C. Aubry‐Wake, W. Gurgiser, L.B. Perry, W. Suarez,
    D.J. Quincey, F. Pellicciotti, Journal of Geophysical Research: Atmospheres 126
    (2021).'
date_created: 2023-02-20T08:10:43Z
date_published: 2021-12-16T00:00:00Z
date_updated: 2023-02-28T13:31:08Z
day: '16'
doi: 10.1029/2021jd034911
extern: '1'
intvolume: '       126'
issue: '23'
keyword:
- Space and Planetary Science
- Earth and Planetary Sciences (miscellaneous)
- Atmospheric Science
- Geophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1029/2021JD034911
month: '12'
oa: 1
oa_version: Published Version
publication: 'Journal of Geophysical Research: Atmospheres'
publication_identifier:
  eissn:
  - 2169-8996
  issn:
  - 2169-897X
publication_status: published
publisher: American Geophysical Union
quality_controlled: '1'
scopus_import: '1'
status: public
title: The energy and mass balance of Peruvian Glaciers
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 126
year: '2021'
...
---
_id: '12584'
abstract:
- lang: eng
  text: This project explored the integrated use of satellite, ground observations
    and hydrological distributed models to support water resources assessment and
    monitoring in High Mountain Asia (HMA). Hydrological data products were generated
    taking advantage of the synergies of European and Chinese data assets and space-borne
    observation systems. Energy-budget-based glacier mass balance and hydrological
    models driven by satellite observations were developed. These models can be applied
    to describe glacier-melt contribution to river flow. Satellite hydrological data
    products were used for forcing, calibration, validation and data assimilation
    in distributed river basin models. A pilot study was carried out on the Red River
    basin. Multiple hydrological data products were generated using the data collected
    by Chinese satellites. A new Evapo-Transpiration (ET) dataset from 2000 to 2018
    was generated, including plant transpiration, soil evaporation, rainfall interception
    loss, snow/ice sublimation and open water evaporation. Higher resolution data
    were used to characterize glaciers and their response to environmental forcing.
    These studies focused on the Parlung Zangbo Basin, where glacier facies were mapped
    with GaoFeng (GF), Sentinal-2/Multi-Spectral Imager (S2/MSI) and Landsat8/Operational
    Land Imager (L8/OLI) data. The geodetic mass balance was estimated between 2000
    and 2017 with Zi-Yuan (ZY)-3 Stereo Images and the SRTM DEM. Surface velocity
    was studied with Landsat5/Thematic Mapper (L5/TM), L8/OLI and S2/MSI data over
    the period 2013–2019. An updated method was developed to improve the retrieval
    of glacier albedo by correcting glacier reflectance for anisotropy, and a new
    dataset on glacier albedo was generated for the period 2001–2020. A detailed glacier
    energy and mass balance model was developed with the support of field experiments
    at the Parlung No. 4 Glacier and the 24 K Glacier, both in the Tibetan Plateau.
    Besides meteorological measurements, the field experiments included glaciological
    and hydrological measurements. The energy balance model was formulated in terms
    of enthalpy for easier treatment of water phase transitions. The model was applied
    to assess the spatial variability in glacier melt. In the Parlung No. 4 Glacier,
    the accumulated glacier melt was between 1.5 and 2.5 m w.e. in the accumulation
    zone and between 4.5 and 6.0 m w.e. in the ablation zone, reaching 6.5 m w.e.
    at the terminus. The seasonality in the glacier mass balance was observed by combining
    intensive field campaigns with continuous automatic observations. The linkage
    of the glacier and snowpack mass balance with water resources in a river basin
    was analyzed in the Chiese (Italy) and Heihe (China) basins by developing and
    applying integrated hydrological models using satellite retrievals in multiple
    ways. The model FEST-WEB was calibrated using retrievals of Land Surface Temperature
    (LST) to map soil hydrological properties. A watershed model was developed by
    coupling ecohydrological and socioeconomic systems. Integrated modeling is supported
    by an updated and parallelized data assimilation system. The latter exploits retrievals
    of brightness temperature (Advanced Microwave Scanning Radiometer, AMSR), LST
    (Moderate Resolution Imaging Spectroradiometer, MODIS), precipitation (Tropical
    Rainfall Measuring Mission (TRMM) and FengYun (FY)-2D) and in-situ measurements.
    In the case study on the Red River Basin, a new algorithm has been applied to
    disaggregate the SMOS (Soil Moisture and Ocean Salinity) soil moisture retrievals
    by making use of the correlation between evaporative fraction and soil moisture.
article_number: '5122'
article_processing_charge: No
article_type: letter_note
author:
- first_name: Massimo
  full_name: Menenti, Massimo
  last_name: Menenti
- first_name: Xin
  full_name: Li, Xin
  last_name: Li
- first_name: Li
  full_name: Jia, Li
  last_name: Jia
- first_name: Kun
  full_name: Yang, Kun
  last_name: Yang
- first_name: Francesca
  full_name: Pellicciotti, Francesca
  id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
  last_name: Pellicciotti
- first_name: Marco
  full_name: Mancini, Marco
  last_name: Mancini
- first_name: Jiancheng
  full_name: Shi, Jiancheng
  last_name: Shi
- first_name: Maria José
  full_name: Escorihuela, Maria José
  last_name: Escorihuela
- first_name: Chaolei
  full_name: Zheng, Chaolei
  last_name: Zheng
- first_name: Qiting
  full_name: Chen, Qiting
  last_name: Chen
- first_name: Jing
  full_name: Lu, Jing
  last_name: Lu
- first_name: Jie
  full_name: Zhou, Jie
  last_name: Zhou
- first_name: Guangcheng
  full_name: Hu, Guangcheng
  last_name: Hu
- first_name: Shaoting
  full_name: Ren, Shaoting
  last_name: Ren
- first_name: Jing
  full_name: Zhang, Jing
  last_name: Zhang
- first_name: Qinhuo
  full_name: Liu, Qinhuo
  last_name: Liu
- first_name: Yubao
  full_name: Qiu, Yubao
  last_name: Qiu
- first_name: Chunlin
  full_name: Huang, Chunlin
  last_name: Huang
- first_name: Ji
  full_name: Zhou, Ji
  last_name: Zhou
- first_name: Xujun
  full_name: Han, Xujun
  last_name: Han
- first_name: Xiaoduo
  full_name: Pan, Xiaoduo
  last_name: Pan
- first_name: Hongyi
  full_name: Li, Hongyi
  last_name: Li
- first_name: Yerong
  full_name: Wu, Yerong
  last_name: Wu
- first_name: Baohong
  full_name: Ding, Baohong
  last_name: Ding
- first_name: Wei
  full_name: Yang, Wei
  last_name: Yang
- first_name: Pascal
  full_name: Buri, Pascal
  last_name: Buri
- first_name: Michael J.
  full_name: McCarthy, Michael J.
  last_name: McCarthy
- first_name: Evan S.
  full_name: Miles, Evan S.
  last_name: Miles
- first_name: Thomas E.
  full_name: Shaw, Thomas E.
  last_name: Shaw
- first_name: Chunfeng
  full_name: Ma, Chunfeng
  last_name: Ma
- first_name: Yanzhao
  full_name: Zhou, Yanzhao
  last_name: Zhou
- first_name: Chiara
  full_name: Corbari, Chiara
  last_name: Corbari
- first_name: Rui
  full_name: Li, Rui
  last_name: Li
- first_name: Tianjie
  full_name: Zhao, Tianjie
  last_name: Zhao
- first_name: Vivien
  full_name: Stefan, Vivien
  last_name: Stefan
- first_name: Qi
  full_name: Gao, Qi
  last_name: Gao
- first_name: Jingxiao
  full_name: Zhang, Jingxiao
  last_name: Zhang
- first_name: Qiuxia
  full_name: Xie, Qiuxia
  last_name: Xie
- first_name: Ning
  full_name: Wang, Ning
  last_name: Wang
- first_name: Yibo
  full_name: Sun, Yibo
  last_name: Sun
- first_name: Xinyu
  full_name: Mo, Xinyu
  last_name: Mo
- first_name: Junru
  full_name: Jia, Junru
  last_name: Jia
- first_name: Achille Pierre
  full_name: Jouberton, Achille Pierre
  last_name: Jouberton
- first_name: Marin
  full_name: Kneib, Marin
  last_name: Kneib
- first_name: Stefan
  full_name: Fugger, Stefan
  last_name: Fugger
- first_name: Nicola
  full_name: Paciolla, Nicola
  last_name: Paciolla
- first_name: Giovanni
  full_name: Paolini, Giovanni
  last_name: Paolini
citation:
  ama: Menenti M, Li X, Jia L, et al. Multi-source hydrological data products to monitor
    High Asian river basins and regional water security. <i>Remote Sensing</i>. 2021;13(24).
    doi:<a href="https://doi.org/10.3390/rs13245122">10.3390/rs13245122</a>
  apa: Menenti, M., Li, X., Jia, L., Yang, K., Pellicciotti, F., Mancini, M., … Paolini,
    G. (2021). Multi-source hydrological data products to monitor High Asian river
    basins and regional water security. <i>Remote Sensing</i>. MDPI. <a href="https://doi.org/10.3390/rs13245122">https://doi.org/10.3390/rs13245122</a>
  chicago: Menenti, Massimo, Xin Li, Li Jia, Kun Yang, Francesca Pellicciotti, Marco
    Mancini, Jiancheng Shi, et al. “Multi-Source Hydrological Data Products to Monitor
    High Asian River Basins and Regional Water Security.” <i>Remote Sensing</i>. MDPI,
    2021. <a href="https://doi.org/10.3390/rs13245122">https://doi.org/10.3390/rs13245122</a>.
  ieee: M. Menenti <i>et al.</i>, “Multi-source hydrological data products to monitor
    High Asian river basins and regional water security,” <i>Remote Sensing</i>, vol.
    13, no. 24. MDPI, 2021.
  ista: Menenti M, Li X, Jia L, Yang K, Pellicciotti F, Mancini M, Shi J, Escorihuela
    MJ, Zheng C, Chen Q, Lu J, Zhou J, Hu G, Ren S, Zhang J, Liu Q, Qiu Y, Huang C,
    Zhou J, Han X, Pan X, Li H, Wu Y, Ding B, Yang W, Buri P, McCarthy MJ, Miles ES,
    Shaw TE, Ma C, Zhou Y, Corbari C, Li R, Zhao T, Stefan V, Gao Q, Zhang J, Xie
    Q, Wang N, Sun Y, Mo X, Jia J, Jouberton AP, Kneib M, Fugger S, Paciolla N, Paolini
    G. 2021. Multi-source hydrological data products to monitor High Asian river basins
    and regional water security. Remote Sensing. 13(24), 5122.
  mla: Menenti, Massimo, et al. “Multi-Source Hydrological Data Products to Monitor
    High Asian River Basins and Regional Water Security.” <i>Remote Sensing</i>, vol.
    13, no. 24, 5122, MDPI, 2021, doi:<a href="https://doi.org/10.3390/rs13245122">10.3390/rs13245122</a>.
  short: M. Menenti, X. Li, L. Jia, K. Yang, F. Pellicciotti, M. Mancini, J. Shi,
    M.J. Escorihuela, C. Zheng, Q. Chen, J. Lu, J. Zhou, G. Hu, S. Ren, J. Zhang,
    Q. Liu, Y. Qiu, C. Huang, J. Zhou, X. Han, X. Pan, H. Li, Y. Wu, B. Ding, W. Yang,
    P. Buri, M.J. McCarthy, E.S. Miles, T.E. Shaw, C. Ma, Y. Zhou, C. Corbari, R.
    Li, T. Zhao, V. Stefan, Q. Gao, J. Zhang, Q. Xie, N. Wang, Y. Sun, X. Mo, J. Jia,
    A.P. Jouberton, M. Kneib, S. Fugger, N. Paciolla, G. Paolini, Remote Sensing 13
    (2021).
date_created: 2023-02-20T08:10:49Z
date_published: 2021-12-16T00:00:00Z
date_updated: 2023-02-28T13:26:53Z
day: '16'
doi: 10.3390/rs13245122
extern: '1'
intvolume: '        13'
issue: '24'
keyword:
- General Earth and Planetary Sciences
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.3390/rs13245122
month: '12'
oa: 1
oa_version: Published Version
publication: Remote Sensing
publication_identifier:
  issn:
  - 2072-4292
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Multi-source hydrological data products to monitor High Asian river basins
  and regional water security
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2021'
...
---
_id: '12585'
abstract:
- lang: eng
  text: Glaciers in High Mountain Asia generate meltwater that supports the water
    needs of 250 million people, but current knowledge of annual accumulation and
    ablation is limited to sparse field measurements biased in location and glacier
    size. Here, we present altitudinally-resolved specific mass balances (surface,
    internal, and basal combined) for 5527 glaciers in High Mountain Asia for 2000–2016,
    derived by correcting observed glacier thinning patterns for mass redistribution
    due to ice flow. We find that 41% of glaciers accumulated mass over less than
    20% of their area, and only 60% ± 10% of regional annual ablation was compensated
    by accumulation. Even without 21st century warming, 21% ± 1% of ice volume will
    be lost by 2100 due to current climatic-geometric imbalance, representing a reduction
    in glacier ablation into rivers of 28% ± 1%. The ablation of glaciers in the Himalayas
    and Tien Shan was mostly unsustainable and ice volume in these regions will reduce
    by at least 30% by 2100. The most important and vulnerable glacier-fed river basins
    (Amu Darya, Indus, Syr Darya, Tarim Interior) were supplied with >50% sustainable
    glacier ablation but will see long-term reductions in ice mass and glacier meltwater
    supply regardless of the Karakoram Anomaly.
article_number: '2868'
article_processing_charge: No
article_type: original
author:
- first_name: Evan
  full_name: Miles, Evan
  last_name: Miles
- first_name: Michael
  full_name: McCarthy, Michael
  last_name: McCarthy
- first_name: Amaury
  full_name: Dehecq, Amaury
  last_name: Dehecq
- first_name: Marin
  full_name: Kneib, Marin
  last_name: Kneib
- first_name: Stefan
  full_name: Fugger, Stefan
  last_name: Fugger
- first_name: Francesca
  full_name: Pellicciotti, Francesca
  id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
  last_name: Pellicciotti
citation:
  ama: Miles E, McCarthy M, Dehecq A, Kneib M, Fugger S, Pellicciotti F. Health and
    sustainability of glaciers in High Mountain Asia. <i>Nature Communications</i>.
    2021;12. doi:<a href="https://doi.org/10.1038/s41467-021-23073-4">10.1038/s41467-021-23073-4</a>
  apa: Miles, E., McCarthy, M., Dehecq, A., Kneib, M., Fugger, S., &#38; Pellicciotti,
    F. (2021). Health and sustainability of glaciers in High Mountain Asia. <i>Nature
    Communications</i>. Springer Nature. <a href="https://doi.org/10.1038/s41467-021-23073-4">https://doi.org/10.1038/s41467-021-23073-4</a>
  chicago: Miles, Evan, Michael McCarthy, Amaury Dehecq, Marin Kneib, Stefan Fugger,
    and Francesca Pellicciotti. “Health and Sustainability of Glaciers in High Mountain
    Asia.” <i>Nature Communications</i>. Springer Nature, 2021. <a href="https://doi.org/10.1038/s41467-021-23073-4">https://doi.org/10.1038/s41467-021-23073-4</a>.
  ieee: E. Miles, M. McCarthy, A. Dehecq, M. Kneib, S. Fugger, and F. Pellicciotti,
    “Health and sustainability of glaciers in High Mountain Asia,” <i>Nature Communications</i>,
    vol. 12. Springer Nature, 2021.
  ista: Miles E, McCarthy M, Dehecq A, Kneib M, Fugger S, Pellicciotti F. 2021. Health
    and sustainability of glaciers in High Mountain Asia. Nature Communications. 12,
    2868.
  mla: Miles, Evan, et al. “Health and Sustainability of Glaciers in High Mountain
    Asia.” <i>Nature Communications</i>, vol. 12, 2868, Springer Nature, 2021, doi:<a
    href="https://doi.org/10.1038/s41467-021-23073-4">10.1038/s41467-021-23073-4</a>.
  short: E. Miles, M. McCarthy, A. Dehecq, M. Kneib, S. Fugger, F. Pellicciotti, Nature
    Communications 12 (2021).
date_created: 2023-02-20T08:11:29Z
date_published: 2021-05-17T00:00:00Z
date_updated: 2023-02-28T13:21:51Z
day: '17'
doi: 10.1038/s41467-021-23073-4
extern: '1'
intvolume: '        12'
keyword:
- General Physics and Astronomy
- General Biochemistry
- Genetics and Molecular Biology
- General Chemistry
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/s41467-021-23073-4
month: '05'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Health and sustainability of glaciers in High Mountain Asia
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2021'
...
