[{"publication_status":"epub_ahead","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2023-10-09T07:19:01Z","publisher":"Springer Nature","article_type":"original","date_published":"2023-09-28T00:00:00Z","month":"09","scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2210.12060"}],"title":"Mesoscopic central limit theorem for non-Hermitian random matrices","status":"public","day":"28","author":[{"id":"42198EFA-F248-11E8-B48F-1D18A9856A87","first_name":"Giorgio","last_name":"Cipolloni","full_name":"Cipolloni, Giorgio","orcid":"0000-0002-4901-7992"},{"full_name":"Erdös, László","orcid":"0000-0001-5366-9603","last_name":"Erdös","first_name":"László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Dominik J","id":"408ED176-F248-11E8-B48F-1D18A9856A87","last_name":"Schröder","orcid":"0000-0002-2904-1856","full_name":"Schröder, Dominik J"}],"department":[{"_id":"LaEr"}],"date_created":"2023-10-08T22:01:17Z","oa_version":"Preprint","publication":"Probability Theory and Related Fields","type":"journal_article","article_processing_charge":"No","_id":"14408","abstract":[{"text":"We prove that the mesoscopic linear statistics ∑if(na(σi−z0)) of the eigenvalues {σi}i of large n×n non-Hermitian random matrices with complex centred i.i.d. entries are asymptotically Gaussian for any H20-functions f around any point z0 in the bulk of the spectrum on any mesoscopic scale 0Probability Theory and Related Fields. 2023. doi:10.1007/s00440-023-01229-1","short":"G. Cipolloni, L. Erdös, D.J. Schröder, Probability Theory and Related Fields (2023).","chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Mesoscopic Central Limit Theorem for Non-Hermitian Random Matrices.” Probability Theory and Related Fields. Springer Nature, 2023. https://doi.org/10.1007/s00440-023-01229-1.","apa":"Cipolloni, G., Erdös, L., & Schröder, D. J. (2023). Mesoscopic central limit theorem for non-Hermitian random matrices. Probability Theory and Related Fields. Springer Nature. https://doi.org/10.1007/s00440-023-01229-1","mla":"Cipolloni, Giorgio, et al. “Mesoscopic Central Limit Theorem for Non-Hermitian Random Matrices.” Probability Theory and Related Fields, Springer Nature, 2023, doi:10.1007/s00440-023-01229-1.","ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “Mesoscopic central limit theorem for non-Hermitian random matrices,” Probability Theory and Related Fields. Springer Nature, 2023.","ista":"Cipolloni G, Erdös L, Schröder DJ. 2023. Mesoscopic central limit theorem for non-Hermitian random matrices. Probability Theory and Related Fields."}},{"author":[{"full_name":"Baunis, Haralds","first_name":"Haralds","id":"2eea55ec-e8ec-11ed-86cb-d9c76787acfe","last_name":"Baunis"},{"orcid":"0000-0001-8689-388X","full_name":"Pieber, Bartholomäus","last_name":"Pieber","id":"93e5e5b2-0da6-11ed-8a41-af589a024726","first_name":"Bartholomäus"}],"department":[{"_id":"BaPi"}],"oa_version":"Published Version","date_created":"2023-10-08T22:01:18Z","type":"journal_article","_id":"14409","article_processing_charge":"Yes (via OA deal)","issue":"42","publication":"European Journal of Organic Chemistry","file_date_updated":"2024-01-30T14:04:44Z","tmp":{"image":"/images/cc_by_nc.png","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","short":"CC BY-NC (4.0)","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)"},"volume":26,"title":"Formal radical deoxyfluorination of oxalate-activated alcohols triggered by the selectfluor-DMAP charge-transfer complex","article_number":"e202300769","status":"public","day":"07","scopus_import":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","publisher":"Wiley","date_updated":"2024-01-30T14:05:14Z","date_published":"2023-11-07T00:00:00Z","month":"11","article_type":"original","acknowledgement":"We gratefully acknowledge the Max-Planck Society and the Institute of Science and Technology Austria (ISTA) for generous financial support. We also thank the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – EXC 2008 – 390540038 – UniSysCat for funding. B.P. thanks the Boehringer Ingelheim Foundation for funding through the Plus 3 Perspectives Programme.","doi":"10.1002/ejoc.202300769","citation":{"ista":"Baunis H, Pieber B. 2023. Formal radical deoxyfluorination of oxalate-activated alcohols triggered by the selectfluor-DMAP charge-transfer complex. European Journal of Organic Chemistry. 26(42), e202300769.","ieee":"H. Baunis and B. Pieber, “Formal radical deoxyfluorination of oxalate-activated alcohols triggered by the selectfluor-DMAP charge-transfer complex,” European Journal of Organic Chemistry, vol. 26, no. 42. Wiley, 2023.","mla":"Baunis, Haralds, and Bartholomäus Pieber. “Formal Radical Deoxyfluorination of Oxalate-Activated Alcohols Triggered by the Selectfluor-DMAP Charge-Transfer Complex.” European Journal of Organic Chemistry, vol. 26, no. 42, e202300769, Wiley, 2023, doi:10.1002/ejoc.202300769.","apa":"Baunis, H., & Pieber, B. (2023). Formal radical deoxyfluorination of oxalate-activated alcohols triggered by the selectfluor-DMAP charge-transfer complex. European Journal of Organic Chemistry. Wiley. https://doi.org/10.1002/ejoc.202300769","chicago":"Baunis, Haralds, and Bartholomäus Pieber. “Formal Radical Deoxyfluorination of Oxalate-Activated Alcohols Triggered by the Selectfluor-DMAP Charge-Transfer Complex.” European Journal of Organic Chemistry. Wiley, 2023. https://doi.org/10.1002/ejoc.202300769.","short":"H. Baunis, B. Pieber, European Journal of Organic Chemistry 26 (2023).","ama":"Baunis H, Pieber B. Formal radical deoxyfluorination of oxalate-activated alcohols triggered by the selectfluor-DMAP charge-transfer complex. European Journal of Organic Chemistry. 2023;26(42). doi:10.1002/ejoc.202300769"},"quality_controlled":"1","has_accepted_license":"1","intvolume":" 26","year":"2023","publication_identifier":{"issn":["1434-193X"],"eissn":["1099-0690"]},"language":[{"iso":"eng"}],"isi":1,"external_id":{"isi":["001072666500001"]},"ddc":["540"],"oa":1,"abstract":[{"text":"We present a photon- and metal-free approach for the radical fluorination of aliphatic oxalate-activated alcohols. The method relies on the spontaneous generation of the N-(chloromethyl)triethylenediamine radical dication, a potent single electron oxidant, from Selectfluor and 4-(dimethylamino)pyridine. The protocol is easily scalable and provides the desired fluorinated products within only a few minutes reaction time.","lang":"eng"}],"file":[{"file_id":"14913","date_created":"2024-01-30T14:04:44Z","access_level":"open_access","content_type":"application/pdf","success":1,"relation":"main_file","file_name":"2023_EurJOrgChem_Baunis.pdf","file_size":3277622,"checksum":"e8ad7865acd94672e476f273ccf3d542","creator":"dernst","date_updated":"2024-01-30T14:04:44Z"}]},{"scopus_import":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","publisher":"Springer Nature","date_updated":"2024-02-20T09:02:04Z","date_published":"2023-09-09T00:00:00Z","month":"09","author":[{"full_name":"Beneš, Nikola","last_name":"Beneš","first_name":"Nikola"},{"first_name":"Luboš","last_name":"Brim","full_name":"Brim, Luboš"},{"first_name":"Samuel","id":"07c5ea74-f61c-11ec-a664-aa7c5d957b2b","last_name":"Pastva","orcid":"0000-0003-1993-0331","full_name":"Pastva, Samuel"},{"full_name":"Šafránek, David","first_name":"David","last_name":"Šafránek"},{"full_name":"Šmijáková, Eva","first_name":"Eva","last_name":"Šmijáková"}],"department":[{"_id":"ToHe"}],"project":[{"name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","grant_number":"101034413","call_identifier":"H2020"}],"oa_version":"Submitted Version","date_created":"2023-10-08T22:01:18Z","_id":"14411","type":"conference","article_processing_charge":"No","publication":"21st International Conference on Computational Methods in Systems Biology","file_date_updated":"2024-02-16T08:26:32Z","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"title":"Phenotype control of partially specified boolean networks","volume":14137,"status":"public","day":"09","page":"18-35","alternative_title":["LNBI"],"oa":1,"ddc":["000"],"abstract":[{"lang":"eng","text":"Partially specified Boolean networks (PSBNs) represent a promising framework for the qualitative modelling of biological systems in which the logic of interactions is not completely known. Phenotype control aims to stabilise the network in states exhibiting specific traits.\r\nIn this paper, we define the phenotype control problem in the context of asynchronous PSBNs and propose a novel semi-symbolic algorithm for solving this problem with permanent variable perturbations."}],"file":[{"checksum":"6f71bdaedb770b52380222fd9f4d7937","file_size":691582,"creator":"spastva","date_updated":"2024-02-16T08:26:32Z","file_id":"14997","access_level":"open_access","date_created":"2024-02-16T08:26:32Z","content_type":"application/pdf","success":1,"file_name":"cmsb2023.pdf","relation":"main_file"}],"conference":{"location":"Luxembourg City, Luxembourg","end_date":"2023-09-15","start_date":"2023-09-13","name":"CMSB: Computational Methods in Systems Biology"},"acknowledgement":"This work was supported by the Czech Foundation grant No. GA22-10845S, Grant Agency of Masaryk University grant No. MUNI/G/1771/2020, and the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413.","doi":"10.1007/978-3-031-42697-1_2","citation":{"ama":"Beneš N, Brim L, Pastva S, Šafránek D, Šmijáková E. Phenotype control of partially specified boolean networks. In: 21st International Conference on Computational Methods in Systems Biology. Vol 14137. Springer Nature; 2023:18-35. doi:10.1007/978-3-031-42697-1_2","short":"N. Beneš, L. Brim, S. Pastva, D. Šafránek, E. Šmijáková, in:, 21st International Conference on Computational Methods in Systems Biology, Springer Nature, 2023, pp. 18–35.","chicago":"Beneš, Nikola, Luboš Brim, Samuel Pastva, David Šafránek, and Eva Šmijáková. “Phenotype Control of Partially Specified Boolean Networks.” In 21st International Conference on Computational Methods in Systems Biology, 14137:18–35. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-42697-1_2.","apa":"Beneš, N., Brim, L., Pastva, S., Šafránek, D., & Šmijáková, E. (2023). Phenotype control of partially specified boolean networks. In 21st International Conference on Computational Methods in Systems Biology (Vol. 14137, pp. 18–35). Luxembourg City, Luxembourg: Springer Nature. https://doi.org/10.1007/978-3-031-42697-1_2","mla":"Beneš, Nikola, et al. “Phenotype Control of Partially Specified Boolean Networks.” 21st International Conference on Computational Methods in Systems Biology, vol. 14137, Springer Nature, 2023, pp. 18–35, doi:10.1007/978-3-031-42697-1_2.","ista":"Beneš N, Brim L, Pastva S, Šafránek D, Šmijáková E. 2023. Phenotype control of partially specified boolean networks. 21st International Conference on Computational Methods in Systems Biology. CMSB: Computational Methods in Systems Biology, LNBI, vol. 14137, 18–35.","ieee":"N. Beneš, L. Brim, S. Pastva, D. Šafránek, and E. Šmijáková, “Phenotype control of partially specified boolean networks,” in 21st International Conference on Computational Methods in Systems Biology, Luxembourg City, Luxembourg, 2023, vol. 14137, pp. 18–35."},"quality_controlled":"1","ec_funded":1,"has_accepted_license":"1","intvolume":" 14137","year":"2023","publication_identifier":{"isbn":["9783031426964"],"eissn":["1611-3349"],"issn":["0302-9743"]},"language":[{"iso":"eng"}]},{"external_id":{"arxiv":["2307.06611"]},"alternative_title":["LIPIcs"],"file":[{"date_updated":"2023-10-09T09:19:11Z","creator":"dernst","checksum":"402281b17ed669bbf149d0fdf68ac201","file_size":826843,"relation":"main_file","file_name":"2023_LIPIcsMFCS_Baier.pdf","success":1,"content_type":"application/pdf","date_created":"2023-10-09T09:19:11Z","access_level":"open_access","file_id":"14418"}],"ddc":["000"],"oa":1,"abstract":[{"text":"Entropic risk (ERisk) is an established risk measure in finance, quantifying risk by an exponential re-weighting of rewards. We study ERisk for the first time in the context of turn-based stochastic games with the total reward objective. This gives rise to an objective function that demands the control of systems in a risk-averse manner. We show that the resulting games are determined and, in particular, admit optimal memoryless deterministic strategies. This contrasts risk measures that previously have been considered in the special case of Markov decision processes and that require randomization and/or memory. We provide several results on the decidability and the computational complexity of the threshold problem, i.e. whether the optimal value of ERisk exceeds a given threshold. In the most general case, the problem is decidable subject to Shanuel’s conjecture. If all inputs are rational, the resulting threshold problem can be solved using algebraic numbers, leading to decidability via a polynomial-time reduction to the existential theory of the reals. Further restrictions on the encoding of the input allow the solution of the threshold problem in NP∩coNP. Finally, an approximation algorithm for the optimal value of ERisk is provided.","lang":"eng"}],"citation":{"ama":"Baier C, Chatterjee K, Meggendorfer T, Piribauer J. Entropic risk for turn-based stochastic games. In: 48th International Symposium on Mathematical Foundations of Computer Science. Vol 272. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:10.4230/LIPIcs.MFCS.2023.15","ieee":"C. Baier, K. Chatterjee, T. Meggendorfer, and J. Piribauer, “Entropic risk for turn-based stochastic games,” in 48th International Symposium on Mathematical Foundations of Computer Science, Bordeaux, France, 2023, vol. 272.","ista":"Baier C, Chatterjee K, Meggendorfer T, Piribauer J. 2023. Entropic risk for turn-based stochastic games. 48th International Symposium on Mathematical Foundations of Computer Science. MFCS: Symposium on Mathematical Foundations of Computer Science, LIPIcs, vol. 272, 15.","mla":"Baier, Christel, et al. “Entropic Risk for Turn-Based Stochastic Games.” 48th International Symposium on Mathematical Foundations of Computer Science, vol. 272, 15, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:10.4230/LIPIcs.MFCS.2023.15.","apa":"Baier, C., Chatterjee, K., Meggendorfer, T., & Piribauer, J. (2023). Entropic risk for turn-based stochastic games. In 48th International Symposium on Mathematical Foundations of Computer Science (Vol. 272). Bordeaux, France: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.MFCS.2023.15","chicago":"Baier, Christel, Krishnendu Chatterjee, Tobias Meggendorfer, and Jakob Piribauer. “Entropic Risk for Turn-Based Stochastic Games.” In 48th International Symposium on Mathematical Foundations of Computer Science, Vol. 272. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. https://doi.org/10.4230/LIPIcs.MFCS.2023.15.","short":"C. Baier, K. Chatterjee, T. Meggendorfer, J. Piribauer, in:, 48th International Symposium on Mathematical Foundations of Computer Science, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023."},"doi":"10.4230/LIPIcs.MFCS.2023.15","quality_controlled":"1","ec_funded":1,"conference":{"location":"Bordeaux, France","end_date":"2023-09-01","start_date":"2023-08-28","name":"MFCS: Symposium on Mathematical Foundations of Computer Science"},"acknowledgement":"This work was partly funded by the ERC CoG 863818 (ForM-SMArt), the DFG Grant\r\n389792660 as part of TRR 248 (Foundations of Perspicuous Software Systems), the Cluster of\r\nExcellence EXC 2050/1 (CeTI, project ID 390696704, as part of Germany’s Excellence Strategy), and the DFG projects BA-1679/11-1 and BA-1679/12-1.","publication_identifier":{"isbn":["9783959772921"],"eissn":["1868-8969"]},"language":[{"iso":"eng"}],"year":"2023","intvolume":" 272","arxiv":1,"has_accepted_license":"1","scopus_import":"1","month":"08","date_published":"2023-08-21T00:00:00Z","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","date_updated":"2025-07-14T09:09:57Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","article_processing_charge":"Yes","_id":"14417","type":"conference","file_date_updated":"2023-10-09T09:19:11Z","publication":"48th International Symposium on Mathematical Foundations of Computer Science","project":[{"grant_number":"863818","call_identifier":"H2020","name":"Formal Methods for Stochastic Models: Algorithms and Applications","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E"}],"date_created":"2023-10-09T09:21:05Z","oa_version":"Published Version","department":[{"_id":"KrCh"}],"author":[{"full_name":"Baier, Christel","last_name":"Baier","first_name":"Christel"},{"first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X"},{"full_name":"Meggendorfer, Tobias","orcid":"0000-0002-1712-2165","id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1","first_name":"Tobias","last_name":"Meggendorfer"},{"last_name":"Piribauer","first_name":"Jakob","full_name":"Piribauer, Jakob"}],"day":"21","article_number":"15","status":"public","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"volume":272,"title":"Entropic risk for turn-based stochastic games"},{"article_type":"original","date_published":"2023-10-11T00:00:00Z","month":"10","date_updated":"2023-12-13T13:01:25Z","publisher":"IOP Publishing","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","day":"11","status":"public","article_number":"445201","volume":56,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"title":"Creation rate of Dirac particles at a point source","publication":"Journal of Physics A: Mathematical and Theoretical","file_date_updated":"2023-10-16T07:07:24Z","_id":"14421","type":"journal_article","article_processing_charge":"Yes (via OA deal)","issue":"44","date_created":"2023-10-12T12:42:53Z","oa_version":"Published Version","project":[{"name":"Random matrices beyond Wigner-Dyson-Mehta","_id":"62796744-2b32-11ec-9570-940b20777f1d","call_identifier":"H2020","grant_number":"101020331"}],"department":[{"_id":"GradSch"},{"_id":"LaEr"}],"author":[{"id":"31d731d7-d235-11ea-ad11-b50331c8d7fb","first_name":"Sven Joscha","last_name":"Henheik","full_name":"Henheik, Sven Joscha","orcid":"0000-0003-1106-327X"},{"first_name":"Roderich","last_name":"Tumulka","full_name":"Tumulka, Roderich"}],"file":[{"checksum":"5b68de147dd4c608b71a6e0e844d2ce9","file_size":721399,"creator":"dernst","date_updated":"2023-10-16T07:07:24Z","file_id":"14429","access_level":"open_access","date_created":"2023-10-16T07:07:24Z","success":1,"content_type":"application/pdf","relation":"main_file","file_name":"2023_JourPhysics_Henheik.pdf"}],"abstract":[{"lang":"eng","text":"Only recently has it been possible to construct a self-adjoint Hamiltonian that involves the creation of Dirac particles at a point source in 3d space. Its definition makes use of an interior-boundary condition. Here, we develop for this Hamiltonian a corresponding theory of the Bohmian configuration. That is, we (non-rigorously) construct a Markov jump process $(Q_t)_{t\\in\\mathbb{R}}$ in the configuration space of a variable number of particles that is $|\\psi_t|^2$-distributed at every time t and follows Bohmian trajectories between the jumps. The jumps correspond to particle creation or annihilation events and occur either to or from a configuration with a particle located at the source. The process is the natural analog of Bell's jump process, and a central piece in its construction is the determination of the rate of particle creation. The construction requires an analysis of the asymptotic behavior of the Bohmian trajectories near the source. We find that the particle reaches the source with radial speed 0, but orbits around the source infinitely many times in finite time before absorption (or after emission)."}],"ddc":["510"],"oa":1,"external_id":{"arxiv":["2211.16606"],"isi":["001080908000001"]},"isi":1,"publication_identifier":{"issn":["1751-8113"],"eissn":["1751-8121"]},"language":[{"iso":"eng"}],"year":"2023","arxiv":1,"intvolume":" 56","has_accepted_license":"1","quality_controlled":"1","ec_funded":1,"doi":"10.1088/1751-8121/acfe62","citation":{"ama":"Henheik SJ, Tumulka R. Creation rate of Dirac particles at a point source. Journal of Physics A: Mathematical and Theoretical. 2023;56(44). doi:10.1088/1751-8121/acfe62","ieee":"S. J. Henheik and R. Tumulka, “Creation rate of Dirac particles at a point source,” Journal of Physics A: Mathematical and Theoretical, vol. 56, no. 44. IOP Publishing, 2023.","ista":"Henheik SJ, Tumulka R. 2023. Creation rate of Dirac particles at a point source. Journal of Physics A: Mathematical and Theoretical. 56(44), 445201.","mla":"Henheik, Sven Joscha, and Roderich Tumulka. “Creation Rate of Dirac Particles at a Point Source.” Journal of Physics A: Mathematical and Theoretical, vol. 56, no. 44, 445201, IOP Publishing, 2023, doi:10.1088/1751-8121/acfe62.","apa":"Henheik, S. J., & Tumulka, R. (2023). Creation rate of Dirac particles at a point source. Journal of Physics A: Mathematical and Theoretical. IOP Publishing. https://doi.org/10.1088/1751-8121/acfe62","short":"S.J. Henheik, R. Tumulka, Journal of Physics A: Mathematical and Theoretical 56 (2023).","chicago":"Henheik, Sven Joscha, and Roderich Tumulka. “Creation Rate of Dirac Particles at a Point Source.” Journal of Physics A: Mathematical and Theoretical. IOP Publishing, 2023. https://doi.org/10.1088/1751-8121/acfe62."},"acknowledgement":"J H gratefully acknowledges partial financial support by the ERC Advanced Grant 'RMTBeyond' No. 101020331."},{"isi":1,"external_id":{"arxiv":["2303.07433"],"pmid":["37783698"],"isi":["001084354900008"]},"abstract":[{"lang":"eng","text":"Water adsorption and dissociation processes on pristine low-index TiO2 interfaces are important but poorly understood outside the well-studied anatase (101) and rutile (110). To understand these, we construct three sets of machine learning potentials that are simultaneously applicable to various TiO2 surfaces, based on three density-functional-theory approximations. Here we show the water dissociation free energies on seven pristine TiO2 surfaces, and predict that anatase (100), anatase (110), rutile (001), and rutile (011) favor water dissociation, anatase (101) and rutile (100) have mostly molecular adsorption, while the simulations of rutile (110) sensitively depend on the slab thickness and molecular adsorption is preferred with thick slabs. Moreover, using an automated algorithm, we reveal that these surfaces follow different types of atomistic mechanisms for proton transfer and water dissociation: one-step, two-step, or both. These mechanisms can be rationalized based on the arrangements of water molecules on the different surfaces. Our finding thus demonstrates that the different pristine TiO2 surfaces react with water in distinct ways, and cannot be represented using just the low-energy anatase (101) and rutile (110) surfaces."}],"ddc":["540","000"],"oa":1,"file":[{"file_size":3194116,"checksum":"7d1dffd36b672ec679f08f70ce79da87","creator":"dernst","date_updated":"2023-10-16T07:34:49Z","file_id":"14432","date_created":"2023-10-16T07:34:49Z","access_level":"open_access","success":1,"content_type":"application/pdf","file_name":"2023_NatureComm_Zeng.pdf","relation":"main_file"}],"related_material":{"link":[{"url":"https://github.com/BingqingCheng/TiO2-water","relation":"software"}]},"acknowledgement":"F.S., J.H., and B.C. thank the Swiss National Supercomputing Centre (CSCS) for the generous allocation of CPU hours via production project s1108 at the Piz Daint supercomputer. B.C. acknowledges resources provided by the Cambridge Tier-2 system operated by the University of Cambridge Research Computing Service funded by EPSRC Tier-2 capital grant EP/P020259/1. J.C. acknowledges the Beijing Natural Science Foundation for support under grant No. JQ22001. F.S., and J.H. thank the Swiss Platform for Advanced Scientific Computing (PASC) via the 2021-2024 “Ab Initio Molecular Dynamics at the Exa-Scale” project. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101034413.","ec_funded":1,"quality_controlled":"1","doi":"10.1038/s41467-023-41865-8","citation":{"ama":"Zeng Z, Wodaczek F, Liu K, et al. Mechanistic insight on water dissociation on pristine low-index TiO2 surfaces from machine learning molecular dynamics simulations. Nature Communications. 2023;14. doi:10.1038/s41467-023-41865-8","short":"Z. Zeng, F. Wodaczek, K. Liu, F. Stein, J. Hutter, J. Chen, B. Cheng, Nature Communications 14 (2023).","chicago":"Zeng, Zezhu, Felix Wodaczek, Keyang Liu, Frederick Stein, Jürg Hutter, Ji Chen, and Bingqing Cheng. “Mechanistic Insight on Water Dissociation on Pristine Low-Index TiO2 Surfaces from Machine Learning Molecular Dynamics Simulations.” Nature Communications. Springer Nature, 2023. https://doi.org/10.1038/s41467-023-41865-8.","apa":"Zeng, Z., Wodaczek, F., Liu, K., Stein, F., Hutter, J., Chen, J., & Cheng, B. (2023). Mechanistic insight on water dissociation on pristine low-index TiO2 surfaces from machine learning molecular dynamics simulations. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-023-41865-8","mla":"Zeng, Zezhu, et al. “Mechanistic Insight on Water Dissociation on Pristine Low-Index TiO2 Surfaces from Machine Learning Molecular Dynamics Simulations.” Nature Communications, vol. 14, 6131, Springer Nature, 2023, doi:10.1038/s41467-023-41865-8.","ista":"Zeng Z, Wodaczek F, Liu K, Stein F, Hutter J, Chen J, Cheng B. 2023. Mechanistic insight on water dissociation on pristine low-index TiO2 surfaces from machine learning molecular dynamics simulations. Nature Communications. 14, 6131.","ieee":"Z. Zeng et al., “Mechanistic insight on water dissociation on pristine low-index TiO2 surfaces from machine learning molecular dynamics simulations,” Nature Communications, vol. 14. Springer Nature, 2023."},"has_accepted_license":"1","intvolume":" 14","arxiv":1,"pmid":1,"year":"2023","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["2041-1723"]},"scopus_import":"1","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2023-12-13T13:02:07Z","publisher":"Springer Nature","article_type":"original","date_published":"2023-10-02T00:00:00Z","month":"10","author":[{"full_name":"Zeng, Zezhu","last_name":"Zeng","first_name":"Zezhu","id":"54a2c730-803f-11ed-ab7e-95b29d2680e7"},{"full_name":"Wodaczek, Felix","orcid":"0009-0000-1457-795X","id":"8b4b6a9f-32b0-11ee-9fa8-bbe85e26258e","first_name":"Felix","last_name":"Wodaczek"},{"last_name":"Liu","first_name":"Keyang","full_name":"Liu, Keyang"},{"first_name":"Frederick","last_name":"Stein","full_name":"Stein, Frederick"},{"last_name":"Hutter","first_name":"Jürg","full_name":"Hutter, Jürg"},{"last_name":"Chen","first_name":"Ji","full_name":"Chen, Ji"},{"orcid":"0000-0002-3584-9632","full_name":"Cheng, Bingqing","first_name":"Bingqing","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9","last_name":"Cheng"}],"department":[{"_id":"BiCh"},{"_id":"GradSch"}],"date_created":"2023-10-15T22:01:10Z","oa_version":"Published Version","project":[{"name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","call_identifier":"H2020","grant_number":"101034413"}],"file_date_updated":"2023-10-16T07:34:49Z","publication":"Nature Communications","_id":"14425","article_processing_charge":"Yes","type":"journal_article","volume":14,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"title":"Mechanistic insight on water dissociation on pristine low-index TiO2 surfaces from machine learning molecular dynamics simulations","status":"public","article_number":"6131","day":"02"},{"abstract":[{"lang":"eng","text":"To meet the physiological demands of the body, organs need to establish a functional tissue architecture and adequate size as the embryo develops to adulthood. In the liver, uni- and bipotent progenitor differentiation into hepatocytes and biliary epithelial cells (BECs), and their relative proportions, comprise the functional architecture. Yet, the contribution of individual liver progenitors at the organ level to both fates, and their specific proportion, is unresolved. Combining mathematical modelling with organ-wide, multispectral FRaeppli-NLS lineage tracing in zebrafish, we demonstrate that a precise BEC-to-hepatocyte ratio is established (i) fast, (ii) solely by heterogeneous lineage decisions from uni- and bipotent progenitors, and (iii) independent of subsequent cell type–specific proliferation. Extending lineage tracing to adulthood determined that embryonic cells undergo spatially heterogeneous three-dimensional growth associated with distinct environments. Strikingly, giant clusters comprising almost half a ventral lobe suggest lobe-specific dominant-like growth behaviours. We show substantial hepatocyte polyploidy in juveniles representing another hallmark of postembryonic liver growth. Our findings uncover heterogeneous progenitor contributions to tissue architecture-defining cell type proportions and postembryonic organ growth as key mechanisms forming the adult liver."}],"oa":1,"ddc":["570"],"file":[{"file_name":"2023_PloSBiology_Unterweger.pdf","relation":"main_file","success":1,"content_type":"application/pdf","access_level":"open_access","date_created":"2023-10-16T07:20:49Z","file_id":"14431","date_updated":"2023-10-16T07:20:49Z","creator":"dernst","checksum":"40a2b11b41d70a0e5939f8a52b66e389","file_size":6193110}],"related_material":{"link":[{"relation":"software","url":"https://github.com/JulieKlepstad/LiverDevelopment"}]},"acknowledgement":"We thank the Ober group for discussion and comments on the manuscript. We are grateful to\r\nDr. F. Lemaigre for feedback on the manuscript and Dr. T. Piotrowski for invaluable support.\r\nWe thank the department of experimental medicine (AEM) in Copenhagen for expert fish\r\ncare. We gratefully acknowledge the DanStem Imaging Platform (University of Copenhagen)\r\nfor support and assistance in this work.\r\nThis work is supported by Novo Nordisk Foundation grant NNF17CC0027852 (EAO);\r\nNordisk Foundation grant NNF19OC0058327 (EAO); Novo Nordisk Foundation grant\r\nNNF17OC0031204 (PRL); https://novonordiskfonden.dk/en/; Danish National\r\nResearch Foundation grant DNRF116 (EAO and AT); https://dg.dk/en/; John and Birthe Meyer\r\nFoundation (PRL) and European Research Council (ERC) under the EU Horizon 2020 research and Innovation Programme Grant Agreement No. 851288 (EH).","quality_controlled":"1","ec_funded":1,"citation":{"ama":"Unterweger IA, Klepstad J, Hannezo EB, Lundegaard PR, Trusina A, Ober EA. Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics. PLoS Biology. 2023;21(10). doi:10.1371/journal.pbio.3002315","mla":"Unterweger, Iris A., et al. “Lineage Tracing Identifies Heterogeneous Hepatoblast Contribution to Cell Lineages and Postembryonic Organ Growth Dynamics.” PLoS Biology, vol. 21, no. 10, e3002315, Public Library of Science, 2023, doi:10.1371/journal.pbio.3002315.","ista":"Unterweger IA, Klepstad J, Hannezo EB, Lundegaard PR, Trusina A, Ober EA. 2023. Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics. PLoS Biology. 21(10), e3002315.","ieee":"I. A. Unterweger, J. Klepstad, E. B. Hannezo, P. R. Lundegaard, A. Trusina, and E. A. Ober, “Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics,” PLoS Biology, vol. 21, no. 10. Public Library of Science, 2023.","short":"I.A. Unterweger, J. Klepstad, E.B. Hannezo, P.R. Lundegaard, A. Trusina, E.A. Ober, PLoS Biology 21 (2023).","chicago":"Unterweger, Iris A., Julie Klepstad, Edouard B Hannezo, Pia R. Lundegaard, Ala Trusina, and Elke A. Ober. “Lineage Tracing Identifies Heterogeneous Hepatoblast Contribution to Cell Lineages and Postembryonic Organ Growth Dynamics.” PLoS Biology. Public Library of Science, 2023. https://doi.org/10.1371/journal.pbio.3002315.","apa":"Unterweger, I. A., Klepstad, J., Hannezo, E. B., Lundegaard, P. R., Trusina, A., & Ober, E. A. (2023). Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics. PLoS Biology. Public Library of Science. https://doi.org/10.1371/journal.pbio.3002315"},"doi":"10.1371/journal.pbio.3002315","has_accepted_license":"1","intvolume":" 21","year":"2023","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1545-7885"]},"scopus_import":"1","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2023-10-16T07:25:48Z","publisher":"Public Library of Science","article_type":"original","date_published":"2023-10-04T00:00:00Z","month":"10","author":[{"full_name":"Unterweger, Iris A.","last_name":"Unterweger","first_name":"Iris A."},{"last_name":"Klepstad","first_name":"Julie","full_name":"Klepstad, Julie"},{"orcid":"0000-0001-6005-1561","full_name":"Hannezo, Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","first_name":"Edouard B","last_name":"Hannezo"},{"first_name":"Pia R.","last_name":"Lundegaard","full_name":"Lundegaard, Pia R."},{"full_name":"Trusina, Ala","first_name":"Ala","last_name":"Trusina"},{"full_name":"Ober, Elke A.","first_name":"Elke A.","last_name":"Ober"}],"department":[{"_id":"EdHa"}],"date_created":"2023-10-15T22:01:10Z","oa_version":"Published Version","project":[{"grant_number":"851288","call_identifier":"H2020","name":"Design Principles of Branching Morphogenesis","_id":"05943252-7A3F-11EA-A408-12923DDC885E"}],"publication":"PLoS Biology","file_date_updated":"2023-10-16T07:20:49Z","type":"journal_article","_id":"14426","issue":"10","article_processing_charge":"No","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"volume":21,"title":"Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics","status":"public","article_number":"e3002315","day":"04"},{"arxiv":1,"year":"2023","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1432-0916"],"issn":["0010-3616"]},"acknowledgement":"VK acknowledges a partial support by the NSF grant DMS-1402164 and ERC Grant #885707. Discussions with Martin Leguil and Jacopo De Simoi were very useful. JC visited the University of Maryland and thanks for the hospitality. Also, JC was partially supported by the National Key Research and Development Program of China (No.2022YFA1005802), the NSFC Grant 12001392 and NSF of Jiangsu BK20200850. H.-K. Zhang is partially supported by the National Science Foundation (DMS-2220211), as well as Simons Foundation Collaboration Grants for Mathematicians (706383).","doi":"10.1007/s00220-023-04837-z","citation":{"ama":"Chen J, Kaloshin V, Zhang HK. Length spectrum rigidity for piecewise analytic Bunimovich billiards. Communications in Mathematical Physics. 2023. doi:10.1007/s00220-023-04837-z","mla":"Chen, Jianyu, et al. “Length Spectrum Rigidity for Piecewise Analytic Bunimovich Billiards.” Communications in Mathematical Physics, Springer Nature, 2023, doi:10.1007/s00220-023-04837-z.","ieee":"J. Chen, V. Kaloshin, and H. K. Zhang, “Length spectrum rigidity for piecewise analytic Bunimovich billiards,” Communications in Mathematical Physics. Springer Nature, 2023.","ista":"Chen J, Kaloshin V, Zhang HK. 2023. Length spectrum rigidity for piecewise analytic Bunimovich billiards. Communications in Mathematical Physics.","chicago":"Chen, Jianyu, Vadim Kaloshin, and Hong Kun Zhang. “Length Spectrum Rigidity for Piecewise Analytic Bunimovich Billiards.” Communications in Mathematical Physics. Springer Nature, 2023. https://doi.org/10.1007/s00220-023-04837-z.","short":"J. Chen, V. Kaloshin, H.K. Zhang, Communications in Mathematical Physics (2023).","apa":"Chen, J., Kaloshin, V., & Zhang, H. K. (2023). Length spectrum rigidity for piecewise analytic Bunimovich billiards. Communications in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s00220-023-04837-z"},"ec_funded":1,"quality_controlled":"1","oa":1,"abstract":[{"text":"In the paper, we establish Squash Rigidity Theorem—the dynamical spectral rigidity for piecewise analytic Bunimovich squash-type stadia whose convex arcs are homothetic. We also establish Stadium Rigidity Theorem—the dynamical spectral rigidity for piecewise analytic Bunimovich stadia whose flat boundaries are a priori fixed. In addition, for smooth Bunimovich squash-type stadia we compute the Lyapunov exponents along the maximal period two orbit, as well as the value of the Peierls’ Barrier function from the maximal marked length spectrum associated to the rotation number 2n/4n+1.","lang":"eng"}],"isi":1,"external_id":{"arxiv":["1902.07330"],"isi":["001073177200001"]},"title":"Length spectrum rigidity for piecewise analytic Bunimovich billiards","status":"public","day":"29","author":[{"last_name":"Chen","first_name":"Jianyu","full_name":"Chen, Jianyu"},{"orcid":"0000-0002-6051-2628","full_name":"Kaloshin, Vadim","id":"FE553552-CDE8-11E9-B324-C0EBE5697425","first_name":"Vadim","last_name":"Kaloshin"},{"first_name":"Hong Kun","last_name":"Zhang","full_name":"Zhang, Hong Kun"}],"department":[{"_id":"VaKa"}],"project":[{"grant_number":"885707","call_identifier":"H2020","name":"Spectral rigidity and integrability for billiards and geodesic flows","_id":"9B8B92DE-BA93-11EA-9121-9846C619BF3A"}],"oa_version":"Preprint","date_created":"2023-10-15T22:01:11Z","_id":"14427","article_processing_charge":"No","type":"journal_article","publication":"Communications in Mathematical Physics","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"epub_ahead","publisher":"Springer Nature","date_updated":"2023-12-13T13:02:44Z","month":"09","date_published":"2023-09-29T00:00:00Z","article_type":"original","scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1902.07330"}]},{"alternative_title":["LNCS"],"page":"514-546","abstract":[{"lang":"eng","text":"Suppose we have two hash functions h1 and h2, but we trust the security of only one of them. To mitigate this worry, we wish to build a hash combiner Ch1,h2 which is secure so long as one of the underlying hash functions is. This question has been well-studied in the regime of collision resistance. In this case, concatenating the two hash function outputs clearly works. Unfortunately, a long series of works (Boneh and Boyen, CRYPTO’06; Pietrzak, Eurocrypt’07; Pietrzak, CRYPTO’08) showed no (noticeably) shorter combiner for collision resistance is possible.\r\nIn this work, we revisit this pessimistic state of affairs, motivated by the observation that collision-resistance is insufficient for many interesting applications of cryptographic hash functions anyway. We argue the right formulation of the “hash combiner” is to build what we call random oracle (RO) combiners, utilizing stronger assumptions for stronger constructions.\r\nIndeed, we circumvent the previous lower bounds for collision resistance by constructing a simple length-preserving RO combiner C˜h1,h2Z1,Z2(M)=h1(M,Z1)⊕h2(M,Z2),where Z1,Z2\r\n are random salts of appropriate length. We show that this extra randomness is necessary for RO combiners, and indeed our construction is somewhat tight with this lower bound.\r\nOn the negative side, we show that one cannot generically apply the composition theorem to further replace “monolithic” hash functions h1 and h2 by some simpler indifferentiable construction (such as the Merkle-Damgård transformation) from smaller components, such as fixed-length compression functions. Finally, despite this issue, we directly prove collision resistance of the Merkle-Damgård variant of our combiner, where h1 and h2 are replaced by iterative Merkle-Damgård hashes applied to a fixed-length compression function. Thus, we can still subvert the concatenation barrier for collision-resistance combiners while utilizing practically small fixed-length components underneath."}],"oa":1,"quality_controlled":"1","citation":{"ama":"Dodis Y, Ferguson N, Goldin E, Hall P, Pietrzak KZ. Random oracle combiners: Breaking the concatenation barrier for collision-resistance. In: 43rd Annual International Cryptology Conference. Vol 14082. Springer Nature; 2023:514-546. doi:10.1007/978-3-031-38545-2_17","mla":"Dodis, Yevgeniy, et al. “Random Oracle Combiners: Breaking the Concatenation Barrier for Collision-Resistance.” 43rd Annual International Cryptology Conference, vol. 14082, Springer Nature, 2023, pp. 514–46, doi:10.1007/978-3-031-38545-2_17.","ista":"Dodis Y, Ferguson N, Goldin E, Hall P, Pietrzak KZ. 2023. Random oracle combiners: Breaking the concatenation barrier for collision-resistance. 43rd Annual International Cryptology Conference. CRYPTO: Advances in Cryptology, LNCS, vol. 14082, 514–546.","ieee":"Y. Dodis, N. Ferguson, E. Goldin, P. Hall, and K. Z. Pietrzak, “Random oracle combiners: Breaking the concatenation barrier for collision-resistance,” in 43rd Annual International Cryptology Conference, Santa Barbara, CA, United States, 2023, vol. 14082, pp. 514–546.","short":"Y. Dodis, N. Ferguson, E. Goldin, P. Hall, K.Z. Pietrzak, in:, 43rd Annual International Cryptology Conference, Springer Nature, 2023, pp. 514–546.","chicago":"Dodis, Yevgeniy, Niels Ferguson, Eli Goldin, Peter Hall, and Krzysztof Z Pietrzak. “Random Oracle Combiners: Breaking the Concatenation Barrier for Collision-Resistance.” In 43rd Annual International Cryptology Conference, 14082:514–46. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-38545-2_17.","apa":"Dodis, Y., Ferguson, N., Goldin, E., Hall, P., & Pietrzak, K. Z. (2023). Random oracle combiners: Breaking the concatenation barrier for collision-resistance. In 43rd Annual International Cryptology Conference (Vol. 14082, pp. 514–546). Santa Barbara, CA, United States: Springer Nature. https://doi.org/10.1007/978-3-031-38545-2_17"},"doi":"10.1007/978-3-031-38545-2_17","conference":{"end_date":"2023-08-24","start_date":"2023-08-20","location":"Santa Barbara, CA, United States","name":"CRYPTO: Advances in Cryptology"},"year":"2023","publication_identifier":{"isbn":["9783031385445"],"eissn":["1611-3349"],"issn":["0302-9743"]},"language":[{"iso":"eng"}],"intvolume":" 14082","main_file_link":[{"open_access":"1","url":"https://eprint.iacr.org/2023/1041"}],"scopus_import":"1","month":"08","date_published":"2023-08-09T00:00:00Z","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2023-10-16T08:02:11Z","publisher":"Springer Nature","date_created":"2023-10-15T22:01:11Z","oa_version":"Preprint","publication":"43rd Annual International Cryptology Conference","_id":"14428","type":"conference","article_processing_charge":"No","author":[{"last_name":"Dodis","first_name":"Yevgeniy","full_name":"Dodis, Yevgeniy"},{"last_name":"Ferguson","first_name":"Niels","full_name":"Ferguson, Niels"},{"last_name":"Goldin","first_name":"Eli","full_name":"Goldin, Eli"},{"first_name":"Peter","last_name":"Hall","full_name":"Hall, Peter"},{"first_name":"Krzysztof Z","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","last_name":"Pietrzak","orcid":"0000-0002-9139-1654","full_name":"Pietrzak, Krzysztof Z"}],"department":[{"_id":"KrPi"}],"day":"09","volume":14082,"title":"Random oracle combiners: Breaking the concatenation barrier for collision-resistance","status":"public"},{"file":[{"success":1,"content_type":"application/pdf","relation":"main_file","file_name":"2023_CommMathPhysics_Brooks.pdf","file_id":"14477","access_level":"open_access","date_created":"2023-10-31T12:21:39Z","date_updated":"2023-10-31T12:21:39Z","file_size":832375,"checksum":"1ae49b39247cb6b40ff75997381581b8","creator":"dernst"}],"abstract":[{"lang":"eng","text":"We study the Fröhlich polaron model in R3, and establish the subleading term in the strong coupling asymptotics of its ground state energy, corresponding to the quantum corrections to the classical energy determined by the Pekar approximation."}],"oa":1,"ddc":["510"],"external_id":{"arxiv":["2207.03156"]},"page":"287-337","language":[{"iso":"eng"}],"publication_identifier":{"issn":["0010-3616"],"eissn":["1432-0916"]},"year":"2023","intvolume":" 404","arxiv":1,"has_accepted_license":"1","ec_funded":1,"quality_controlled":"1","citation":{"apa":"Brooks, M., & Seiringer, R. (2023). The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy. Communications in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s00220-023-04841-3","short":"M. Brooks, R. Seiringer, Communications in Mathematical Physics 404 (2023) 287–337.","chicago":"Brooks, Morris, and Robert Seiringer. “The Fröhlich Polaron at Strong Coupling: Part I - The Quantum Correction to the Classical Energy.” Communications in Mathematical Physics. Springer Nature, 2023. https://doi.org/10.1007/s00220-023-04841-3.","ieee":"M. Brooks and R. Seiringer, “The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy,” Communications in Mathematical Physics, vol. 404. Springer Nature, pp. 287–337, 2023.","ista":"Brooks M, Seiringer R. 2023. The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy. Communications in Mathematical Physics. 404, 287–337.","mla":"Brooks, Morris, and Robert Seiringer. “The Fröhlich Polaron at Strong Coupling: Part I - The Quantum Correction to the Classical Energy.” Communications in Mathematical Physics, vol. 404, Springer Nature, 2023, pp. 287–337, doi:10.1007/s00220-023-04841-3.","ama":"Brooks M, Seiringer R. The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy. Communications in Mathematical Physics. 2023;404:287-337. doi:10.1007/s00220-023-04841-3"},"doi":"10.1007/s00220-023-04841-3","acknowledgement":"Funding from the European Union’s Horizon 2020 research and innovation programme under the ERC grant agreement No 694227 is acknowledged. Open access funding provided by Institute of Science and Technology (IST Austria).","article_type":"original","month":"11","date_published":"2023-11-01T00:00:00Z","date_updated":"2023-10-31T12:22:51Z","publisher":"Springer Nature","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","day":"01","status":"public","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"volume":404,"title":"The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy","publication":"Communications in Mathematical Physics","file_date_updated":"2023-10-31T12:21:39Z","_id":"14441","type":"journal_article","article_processing_charge":"Yes (via OA deal)","date_created":"2023-10-22T22:01:13Z","oa_version":"Published Version","project":[{"grant_number":"694227","call_identifier":"H2020","name":"Analysis of quantum many-body systems","_id":"25C6DC12-B435-11E9-9278-68D0E5697425"}],"department":[{"_id":"RoSe"}],"author":[{"full_name":"Brooks, Morris","orcid":"0000-0002-6249-0928","id":"B7ECF9FC-AA38-11E9-AC9A-0930E6697425","first_name":"Morris","last_name":"Brooks"},{"last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","first_name":"Robert","orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert"}]},{"status":"public","title":"Substructures in Latin squares","volume":256,"day":"01","department":[{"_id":"MaKw"}],"author":[{"last_name":"Kwan","id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3","first_name":"Matthew Alan","orcid":"0000-0002-4003-7567","full_name":"Kwan, Matthew Alan"},{"first_name":"Ashwin","last_name":"Sah","full_name":"Sah, Ashwin"},{"full_name":"Sawhney, Mehtaab","last_name":"Sawhney","first_name":"Mehtaab"},{"full_name":"Simkin, Michael","last_name":"Simkin","first_name":"Michael"}],"_id":"14444","type":"journal_article","issue":"2","article_processing_charge":"Yes (in subscription journal)","publication":"Israel Journal of Mathematics","oa_version":"Preprint","date_created":"2023-10-22T22:01:14Z","publisher":"Springer Nature","date_updated":"2023-10-31T11:27:30Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","date_published":"2023-09-01T00:00:00Z","month":"09","article_type":"original","scopus_import":"1","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2202.05088","open_access":"1"}],"arxiv":1,"intvolume":" 256","publication_identifier":{"eissn":["1565-8511"],"issn":["0021-2172"]},"language":[{"iso":"eng"}],"year":"2023","acknowledgement":"Sah and Sawhney were supported by NSF Graduate Research Fellowship Program DGE-1745302. Sah was supported by the PD Soros Fellowship. Simkin was supported by the Center of Mathematical Sciences and Applications at Harvard University.","doi":"10.1007/s11856-023-2513-9","citation":{"ama":"Kwan MA, Sah A, Sawhney M, Simkin M. Substructures in Latin squares. Israel Journal of Mathematics. 2023;256(2):363-416. doi:10.1007/s11856-023-2513-9","short":"M.A. Kwan, A. Sah, M. Sawhney, M. Simkin, Israel Journal of Mathematics 256 (2023) 363–416.","chicago":"Kwan, Matthew Alan, Ashwin Sah, Mehtaab Sawhney, and Michael Simkin. “Substructures in Latin Squares.” Israel Journal of Mathematics. Springer Nature, 2023. https://doi.org/10.1007/s11856-023-2513-9.","apa":"Kwan, M. A., Sah, A., Sawhney, M., & Simkin, M. (2023). Substructures in Latin squares. Israel Journal of Mathematics. Springer Nature. https://doi.org/10.1007/s11856-023-2513-9","mla":"Kwan, Matthew Alan, et al. “Substructures in Latin Squares.” Israel Journal of Mathematics, vol. 256, no. 2, Springer Nature, 2023, pp. 363–416, doi:10.1007/s11856-023-2513-9.","ieee":"M. A. Kwan, A. Sah, M. Sawhney, and M. Simkin, “Substructures in Latin squares,” Israel Journal of Mathematics, vol. 256, no. 2. Springer Nature, pp. 363–416, 2023.","ista":"Kwan MA, Sah A, Sawhney M, Simkin M. 2023. Substructures in Latin squares. Israel Journal of Mathematics. 256(2), 363–416."},"quality_controlled":"1","oa":1,"abstract":[{"text":"We prove several results about substructures in Latin squares. First, we explain how to adapt our recent work on high-girth Steiner triple systems to the setting of Latin squares, resolving a conjecture of Linial that there exist Latin squares with arbitrarily high girth. As a consequence, we see that the number of order- n Latin squares with no intercalate (i.e., no 2×2 Latin subsquare) is at least (e−9/4n−o(n))n2. Equivalently, P[N=0]≥e−n2/4−o(n2)=e−(1+o(1))EN\r\n , where N is the number of intercalates in a uniformly random order- n Latin square. \r\nIn fact, extending recent work of Kwan, Sah, and Sawhney, we resolve the general large-deviation problem for intercalates in random Latin squares, up to constant factors in the exponent: for any constant 0<δ≤1 we have P[N≤(1−δ)EN]=exp(−Θ(n2)) and for any constant δ>0 we have P[N≥(1+δ)EN]=exp(−Θ(n4/3logn)). \r\nFinally, as an application of some new general tools for studying substructures in random Latin squares, we show that in almost all order- n Latin squares, the number of cuboctahedra (i.e., the number of pairs of possibly degenerate 2×2 submatrices with the same arrangement of symbols) is of order n4, which is the minimum possible. As observed by Gowers and Long, this number can be interpreted as measuring ``how associative'' the quasigroup associated with the Latin square is.","lang":"eng"}],"external_id":{"arxiv":["2202.05088"]},"page":"363-416"},{"scopus_import":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","publisher":"Springer Nature","date_updated":"2023-12-13T13:09:07Z","month":"09","date_published":"2023-09-01T00:00:00Z","article_type":"original","author":[{"first_name":"Uli","id":"36690CA2-F248-11E8-B48F-1D18A9856A87","last_name":"Wagner","full_name":"Wagner, Uli","orcid":"0000-0002-1494-0568"},{"id":"4C20D868-F248-11E8-B48F-1D18A9856A87","first_name":"Pascal","last_name":"Wild","full_name":"Wild, Pascal"}],"department":[{"_id":"UlWa"}],"date_created":"2023-10-22T22:01:14Z","oa_version":"Published Version","article_processing_charge":"Yes (via OA deal)","_id":"14445","type":"journal_article","issue":"2","publication":"Israel Journal of Mathematics","file_date_updated":"2023-10-31T11:20:31Z","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"title":"Coboundary expansion, equivariant overlap, and crossing numbers of simplicial complexes","volume":256,"status":"public","day":"01","isi":1,"page":"675-717","external_id":{"isi":["001081646400010"]},"oa":1,"ddc":["510"],"abstract":[{"lang":"eng","text":"We prove the following quantitative Borsuk–Ulam-type result (an equivariant analogue of Gromov’s Topological Overlap Theorem): Let X be a free ℤ/2-complex of dimension d with coboundary expansion at least ηk in dimension 0 ≤ k < d. Then for every equivariant map F: X →ℤ/2 ℝd, the fraction of d-simplices σ of X with 0 ∈ F (σ) is at least 2−d Π d−1k=0ηk.\r\n\r\nAs an application, we show that for every sufficiently thick d-dimensional spherical building Y and every map f: Y → ℝ2d, we have f(σ) ∩ f(τ) ≠ ∅ for a constant fraction μd > 0 of pairs {σ, τ} of d-simplices of Y. In particular, such complexes are non-embeddable into ℝ2d, which proves a conjecture of Tancer and Vorwerk for sufficiently thick spherical buildings.\r\n\r\nWe complement these results by upper bounds on the coboundary expansion of two families of simplicial complexes; this indicates some limitations to the bounds one can obtain by straighforward applications of the quantitative Borsuk–Ulam theorem. Specifically, we prove\r\n\r\n• an upper bound of (d + 1)/2d on the normalized (d − 1)-th coboundary expansion constant of complete (d + 1)-partite d-dimensional complexes (under a mild divisibility assumption on the sizes of the parts); and\r\n\r\n• an upper bound of (d + 1)/2d + ε on the normalized (d − 1)-th coboundary expansion of the d-dimensional spherical building associated with GLd+2(Fq) for any ε > 0 and sufficiently large q. This disproves, in a rather strong sense, a conjecture of Lubotzky, Meshulam and Mozes."}],"file":[{"file_size":623787,"checksum":"fbb05619fe4b650f341cc730425dd9c3","creator":"dernst","date_updated":"2023-10-31T11:20:31Z","file_id":"14475","date_created":"2023-10-31T11:20:31Z","access_level":"open_access","content_type":"application/pdf","success":1,"relation":"main_file","file_name":"2023_IsraelJourMath_Wagner.pdf"}],"doi":"10.1007/s11856-023-2521-9","citation":{"ama":"Wagner U, Wild P. Coboundary expansion, equivariant overlap, and crossing numbers of simplicial complexes. Israel Journal of Mathematics. 2023;256(2):675-717. doi:10.1007/s11856-023-2521-9","mla":"Wagner, Uli, and Pascal Wild. “Coboundary Expansion, Equivariant Overlap, and Crossing Numbers of Simplicial Complexes.” Israel Journal of Mathematics, vol. 256, no. 2, Springer Nature, 2023, pp. 675–717, doi:10.1007/s11856-023-2521-9.","ista":"Wagner U, Wild P. 2023. Coboundary expansion, equivariant overlap, and crossing numbers of simplicial complexes. Israel Journal of Mathematics. 256(2), 675–717.","ieee":"U. Wagner and P. Wild, “Coboundary expansion, equivariant overlap, and crossing numbers of simplicial complexes,” Israel Journal of Mathematics, vol. 256, no. 2. Springer Nature, pp. 675–717, 2023.","chicago":"Wagner, Uli, and Pascal Wild. “Coboundary Expansion, Equivariant Overlap, and Crossing Numbers of Simplicial Complexes.” Israel Journal of Mathematics. Springer Nature, 2023. https://doi.org/10.1007/s11856-023-2521-9.","short":"U. Wagner, P. Wild, Israel Journal of Mathematics 256 (2023) 675–717.","apa":"Wagner, U., & Wild, P. (2023). Coboundary expansion, equivariant overlap, and crossing numbers of simplicial complexes. Israel Journal of Mathematics. Springer Nature. https://doi.org/10.1007/s11856-023-2521-9"},"quality_controlled":"1","has_accepted_license":"1","intvolume":" 256","year":"2023","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1565-8511"],"issn":["0021-2172"]}},{"status":"public","tmp":{"image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"volume":23,"title":"Against the flow of time with multi-output models","day":"01","department":[{"_id":"ChLa"}],"author":[{"full_name":"Jakubík, Jozef","first_name":"Jozef","last_name":"Jakubík"},{"last_name":"Bui Thi Mai","id":"3EC6EE64-F248-11E8-B48F-1D18A9856A87","first_name":"Phuong","full_name":"Bui Thi Mai, Phuong"},{"full_name":"Chvosteková, Martina","first_name":"Martina","last_name":"Chvosteková"},{"first_name":"Anna","last_name":"Krakovská","full_name":"Krakovská, Anna"}],"publication":"Measurement Science Review","file_date_updated":"2023-10-31T12:07:23Z","issue":"4","_id":"14446","article_processing_charge":"Yes","type":"journal_article","date_created":"2023-10-22T22:01:15Z","oa_version":"Published Version","date_updated":"2023-10-31T12:12:47Z","publisher":"Sciendo","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","month":"08","date_published":"2023-08-01T00:00:00Z","scopus_import":"1","intvolume":" 23","has_accepted_license":"1","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1335-8871"]},"year":"2023","acknowledgement":"The work was supported by the Scientific Grant Agency of the Ministry of Education of the Slovak Republic and the Slovak Academy of Sciences, projects APVV-21-0216, VEGA2-0096-21 and VEGA 2-0023-22.","quality_controlled":"1","doi":"10.2478/msr-2023-0023","citation":{"ista":"Jakubík J, Phuong M, Chvosteková M, Krakovská A. 2023. Against the flow of time with multi-output models. Measurement Science Review. 23(4), 175–183.","ieee":"J. Jakubík, M. Phuong, M. Chvosteková, and A. Krakovská, “Against the flow of time with multi-output models,” Measurement Science Review, vol. 23, no. 4. Sciendo, pp. 175–183, 2023.","mla":"Jakubík, Jozef, et al. “Against the Flow of Time with Multi-Output Models.” Measurement Science Review, vol. 23, no. 4, Sciendo, 2023, pp. 175–83, doi:10.2478/msr-2023-0023.","apa":"Jakubík, J., Phuong, M., Chvosteková, M., & Krakovská, A. (2023). Against the flow of time with multi-output models. Measurement Science Review. Sciendo. https://doi.org/10.2478/msr-2023-0023","chicago":"Jakubík, Jozef, Mary Phuong, Martina Chvosteková, and Anna Krakovská. “Against the Flow of Time with Multi-Output Models.” Measurement Science Review. Sciendo, 2023. https://doi.org/10.2478/msr-2023-0023.","short":"J. Jakubík, M. Phuong, M. Chvosteková, A. Krakovská, Measurement Science Review 23 (2023) 175–183.","ama":"Jakubík J, Phuong M, Chvosteková M, Krakovská A. Against the flow of time with multi-output models. Measurement Science Review. 2023;23(4):175-183. doi:10.2478/msr-2023-0023"},"file":[{"date_created":"2023-10-31T12:07:23Z","access_level":"open_access","file_id":"14476","relation":"main_file","file_name":"2023_MeasurementScienceRev_Jakubik.pdf","content_type":"application/pdf","success":1,"creator":"dernst","checksum":"b069cc10fa6a7c96b2bc9f728165f9e6","file_size":2639783,"date_updated":"2023-10-31T12:07:23Z"}],"abstract":[{"lang":"eng","text":"Recent work has paid close attention to the first principle of Granger causality, according to which cause precedes effect. In this context, the question may arise whether the detected direction of causality also reverses after the time reversal of unidirectionally coupled data. Recently, it has been shown that for unidirectionally causally connected autoregressive (AR) processes X → Y, after time reversal of data, the opposite causal direction Y → X is indeed detected, although typically as part of the bidirectional X↔ Y link. As we argue here, the answer is different when the measured data are not from AR processes but from linked deterministic systems. When the goal is the usual forward data analysis, cross-mapping-like approaches correctly detect X → Y, while Granger causality-like approaches, which should not be used for deterministic time series, detect causal independence X → Y. The results of backward causal analysis depend on the predictability of the reversed data. Unlike AR processes, observables from deterministic dynamical systems, even complex nonlinear ones, can be predicted well forward, while backward predictions can be difficult (notably when the time reversal of a function leads to one-to-many relations). To address this problem, we propose an approach based on models that provide multiple candidate predictions for the target, combined with a loss function that consideres only the best candidate. The resulting good forward and backward predictability supports the view that unidirectionally causally linked deterministic dynamical systems X → Y can be expected to detect the same link both before and after time reversal."}],"ddc":["510"],"oa":1,"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","page":"175-183"},{"department":[{"_id":"JiFr"}],"author":[{"first_name":"Kristýna","last_name":"Bieleszová","full_name":"Bieleszová, Kristýna"},{"full_name":"Hladík, Pavel","first_name":"Pavel","last_name":"Hladík"},{"first_name":"Martin","last_name":"Kubala","full_name":"Kubala, Martin"},{"full_name":"Napier, Richard","first_name":"Richard","last_name":"Napier"},{"full_name":"Brunoni, Federica","first_name":"Federica","last_name":"Brunoni"},{"last_name":"Gelová","first_name":"Zuzana","id":"0AE74790-0E0B-11E9-ABC7-1ACFE5697425","full_name":"Gelová, Zuzana","orcid":"0000-0003-4783-1752"},{"id":"7c417475-8972-11ed-ae7b-8b674ca26986","first_name":"Lukas","last_name":"Fiedler","full_name":"Fiedler, Lukas"},{"first_name":"Ivan","id":"57a1567c-8314-11eb-9063-c9ddc3451a54","last_name":"Kulich","full_name":"Kulich, Ivan"},{"full_name":"Strnad, Miroslav","first_name":"Miroslav","last_name":"Strnad"},{"full_name":"Doležal, Karel","first_name":"Karel","last_name":"Doležal"},{"last_name":"Novák","first_name":"Ondřej","full_name":"Novák, Ondřej"},{"orcid":"0000-0002-8302-7596","full_name":"Friml, Jiří","first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml"},{"first_name":"Asta","last_name":"Žukauskaitė","full_name":"Žukauskaitė, Asta"}],"type":"journal_article","article_processing_charge":"Yes (via OA deal)","_id":"14447","publication":"Plant Growth Regulation","date_created":"2023-10-22T22:01:15Z","oa_version":"Published Version","status":"public","title":"New fluorescent auxin derivatives: anti-auxin activity and accumulation patterns in Arabidopsis thaliana","day":"13","scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1007/s10725-023-01083-0"}],"publisher":"Springer Nature","date_updated":"2023-12-13T13:08:25Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"epub_ahead","date_published":"2023-10-13T00:00:00Z","month":"10","article_type":"original","acknowledgement":"The authors would like to thank Karolína Kubiasová and Iñigo Saiz-Fernández for valuable scientific discussions. Open access publishing supported by the National Technical Library in Prague. This work was supported by the Palacký University Olomouc Young Researcher Grant Competition (JG_2020_002), by the Internal Grant Agency of Palacký University Olomouc (IGA_PrF_2023_016, IGA_PrF_2023_031), by the Ministry of Education, Youth and Sports of the Czech Republic through the European Regional Development Fund-Project Plants as a tool for sustainable global development (CZ.02.1.01/0.0/0.0/16_019/0000827) and the project Support of mobility at Palacký University Olomouc II. (CZ.02.2.69/0.0/0.0/18_053/0016919). The Biacore T200 SPR instrument was provided by the WISB Research Technology Facility within the School of Life Sciences, University of Warwick.","citation":{"ama":"Bieleszová K, Hladík P, Kubala M, et al. New fluorescent auxin derivatives: anti-auxin activity and accumulation patterns in Arabidopsis thaliana. Plant Growth Regulation. 2023. doi:10.1007/s10725-023-01083-0","apa":"Bieleszová, K., Hladík, P., Kubala, M., Napier, R., Brunoni, F., Gelová, Z., … Žukauskaitė, A. (2023). New fluorescent auxin derivatives: anti-auxin activity and accumulation patterns in Arabidopsis thaliana. Plant Growth Regulation. Springer Nature. https://doi.org/10.1007/s10725-023-01083-0","chicago":"Bieleszová, Kristýna, Pavel Hladík, Martin Kubala, Richard Napier, Federica Brunoni, Zuzana Gelová, Lukas Fiedler, et al. “New Fluorescent Auxin Derivatives: Anti-Auxin Activity and Accumulation Patterns in Arabidopsis Thaliana.” Plant Growth Regulation. Springer Nature, 2023. https://doi.org/10.1007/s10725-023-01083-0.","short":"K. Bieleszová, P. Hladík, M. Kubala, R. Napier, F. Brunoni, Z. Gelová, L. Fiedler, I. Kulich, M. Strnad, K. Doležal, O. Novák, J. Friml, A. Žukauskaitė, Plant Growth Regulation (2023).","ieee":"K. Bieleszová et al., “New fluorescent auxin derivatives: anti-auxin activity and accumulation patterns in Arabidopsis thaliana,” Plant Growth Regulation. Springer Nature, 2023.","ista":"Bieleszová K, Hladík P, Kubala M, Napier R, Brunoni F, Gelová Z, Fiedler L, Kulich I, Strnad M, Doležal K, Novák O, Friml J, Žukauskaitė A. 2023. New fluorescent auxin derivatives: anti-auxin activity and accumulation patterns in Arabidopsis thaliana. Plant Growth Regulation.","mla":"Bieleszová, Kristýna, et al. “New Fluorescent Auxin Derivatives: Anti-Auxin Activity and Accumulation Patterns in Arabidopsis Thaliana.” Plant Growth Regulation, Springer Nature, 2023, doi:10.1007/s10725-023-01083-0."},"doi":"10.1007/s10725-023-01083-0","quality_controlled":"1","publication_identifier":{"eissn":["1573-5087"],"issn":["0167-6903"]},"language":[{"iso":"eng"}],"year":"2023","external_id":{"isi":["001084334300001"]},"isi":1,"oa":1,"abstract":[{"lang":"eng","text":"Auxin belongs among major phytohormones and governs multiple aspects of plant growth and development. The establishment of auxin concentration gradients, determines, among other processes, plant organ positioning and growth responses to environmental stimuli.\r\nHerein we report the synthesis of new NBD- or DNS-labelled IAA derivatives and the elucidation of their biological activity, fluorescence properties and subcellular accumulation patterns in planta. These novel compounds did not show auxin-like activity, but instead antagonized physiological auxin effects. The DNS-labelled derivatives FL5 and FL6 showed strong anti-auxin activity in roots and hypocotyls, which also occurred at the level of gene transcription as confirmed by quantitative PCR analysis. The auxin antagonism of our derivatives was further demonstrated in vitro using an SPR-based binding assay. The NBD-labelled compound FL4 with the best fluorescence properties proved to be unsuitable to study auxin accumulation patterns in planta. On the other hand, the strongest anti-auxin activity possessing compounds FL5 and FL6 could be useful to study binding mechanisms to auxin receptors and for manipulations of auxin-regulated processes."}]},{"abstract":[{"lang":"eng","text":"We consider the problem of solving LP relaxations of MAP-MRF inference problems, and in particular the method proposed recently in [16], [35]. As a key computational subroutine, it uses a variant of the Frank-Wolfe (FW) method to minimize a smooth convex function over a combinatorial polytope. We propose an efficient implementation of this subroutine based on in-face Frank-Wolfe directions, introduced in [4] in a different context. More generally, we define an abstract data structure for a combinatorial subproblem that enables in-face FW directions, and describe its specialization for tree-structured MAP-MRF inference subproblems. Experimental results indicate that the resulting method is the current state-of-art LP solver for some classes of problems. Our code is available at pub.ist.ac.at/~vnk/papers/IN-FACE-FW.html."}],"oa":1,"external_id":{"arxiv":["2010.09567"]},"page":"11980-11989","intvolume":" 2023","arxiv":1,"publication_identifier":{"issn":["1063-6919"],"isbn":["9798350301298"]},"language":[{"iso":"eng"}],"year":"2023","conference":{"location":"Vancouver, Canada","end_date":"2023-06-24","start_date":"2023-06-17","name":"CVPR: Conference on Computer Vision and Pattern Recognition"},"quality_controlled":"1","citation":{"short":"V. Kolmogorov, in:, Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, IEEE, 2023, pp. 11980–11989.","chicago":"Kolmogorov, Vladimir. “Solving Relaxations of MAP-MRF Problems: Combinatorial in-Face Frank-Wolfe Directions.” In Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2023:11980–89. IEEE, 2023. https://doi.org/10.1109/CVPR52729.2023.01153.","apa":"Kolmogorov, V. (2023). Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions. In Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition (Vol. 2023, pp. 11980–11989). Vancouver, Canada: IEEE. https://doi.org/10.1109/CVPR52729.2023.01153","mla":"Kolmogorov, Vladimir. “Solving Relaxations of MAP-MRF Problems: Combinatorial in-Face Frank-Wolfe Directions.” Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, vol. 2023, IEEE, 2023, pp. 11980–89, doi:10.1109/CVPR52729.2023.01153.","ieee":"V. Kolmogorov, “Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions,” in Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Vancouver, Canada, 2023, vol. 2023, pp. 11980–11989.","ista":"Kolmogorov V. 2023. Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions. Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition. CVPR: Conference on Computer Vision and Pattern Recognition vol. 2023, 11980–11989.","ama":"Kolmogorov V. Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions. In: Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Vol 2023. IEEE; 2023:11980-11989. doi:10.1109/CVPR52729.2023.01153"},"doi":"10.1109/CVPR52729.2023.01153","date_updated":"2023-10-31T12:01:24Z","publisher":"IEEE","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"08","date_published":"2023-08-22T00:00:00Z","scopus_import":"1","main_file_link":[{"url":" https://doi.org/10.48550/arXiv.2010.09567","open_access":"1"}],"status":"public","volume":2023,"title":"Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions","day":"22","department":[{"_id":"VlKo"}],"author":[{"full_name":"Kolmogorov, Vladimir","last_name":"Kolmogorov","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","first_name":"Vladimir"}],"publication":"Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition","article_processing_charge":"No","_id":"14448","type":"conference","date_created":"2023-10-22T22:01:16Z","oa_version":"Preprint"},{"_id":"14449","article_processing_charge":"Yes","type":"journal_article","file_date_updated":"2023-10-30T13:38:48Z","publication":"Frontiers in Microbiology","oa_version":"Published Version","date_created":"2023-10-22T22:01:16Z","department":[{"_id":"ScienComp"}],"author":[{"last_name":"D’Elia","first_name":"Domenica","full_name":"D’Elia, Domenica"},{"first_name":"Jaak","last_name":"Truu","full_name":"Truu, Jaak"},{"first_name":"Leo","last_name":"Lahti","full_name":"Lahti, Leo"},{"full_name":"Berland, Magali","first_name":"Magali","last_name":"Berland"},{"first_name":"Georgios","last_name":"Papoutsoglou","full_name":"Papoutsoglou, Georgios"},{"full_name":"Ceci, Michelangelo","first_name":"Michelangelo","last_name":"Ceci"},{"first_name":"Aldert","last_name":"Zomer","full_name":"Zomer, Aldert"},{"first_name":"Marta B.","last_name":"Lopes","full_name":"Lopes, Marta B."},{"full_name":"Ibrahimi, Eliana","last_name":"Ibrahimi","first_name":"Eliana"},{"last_name":"Gruca","first_name":"Aleksandra","full_name":"Gruca, Aleksandra"},{"full_name":"Nechyporenko, Alina","first_name":"Alina","last_name":"Nechyporenko"},{"first_name":"Marcus","last_name":"Frohme","full_name":"Frohme, Marcus"},{"first_name":"Thomas","last_name":"Klammsteiner","full_name":"Klammsteiner, Thomas"},{"first_name":"Enrique Carrillo De Santa","last_name":"Pau","full_name":"Pau, Enrique Carrillo De Santa"},{"last_name":"Marcos-Zambrano","first_name":"Laura Judith","full_name":"Marcos-Zambrano, Laura Judith"},{"full_name":"Hron, Karel","last_name":"Hron","first_name":"Karel"},{"full_name":"Pio, Gianvito","last_name":"Pio","first_name":"Gianvito"},{"first_name":"Andrea","last_name":"Simeon","full_name":"Simeon, Andrea"},{"full_name":"Suharoschi, Ramona","first_name":"Ramona","last_name":"Suharoschi"},{"full_name":"Moreno-Indias, Isabel","first_name":"Isabel","last_name":"Moreno-Indias"},{"first_name":"Andriy","last_name":"Temko","full_name":"Temko, Andriy"},{"first_name":"Miroslava","last_name":"Nedyalkova","full_name":"Nedyalkova, Miroslava"},{"full_name":"Apostol, Elena Simona","last_name":"Apostol","first_name":"Elena Simona"},{"full_name":"Truică, Ciprian Octavian","first_name":"Ciprian Octavian","last_name":"Truică"},{"full_name":"Shigdel, Rajesh","first_name":"Rajesh","last_name":"Shigdel"},{"full_name":"Telalović, Jasminka Hasić","first_name":"Jasminka Hasić","last_name":"Telalović"},{"full_name":"Bongcam-Rudloff, Erik","first_name":"Erik","last_name":"Bongcam-Rudloff"},{"last_name":"Przymus","first_name":"Piotr","full_name":"Przymus, Piotr"},{"last_name":"Jordamović","first_name":"Naida Babić","full_name":"Jordamović, Naida Babić"},{"full_name":"Falquet, Laurent","first_name":"Laurent","last_name":"Falquet"},{"first_name":"Sonia","last_name":"Tarazona","full_name":"Tarazona, Sonia"},{"last_name":"Sampri","first_name":"Alexia","full_name":"Sampri, Alexia"},{"last_name":"Isola","first_name":"Gaetano","full_name":"Isola, Gaetano"},{"first_name":"David","last_name":"Pérez-Serrano","full_name":"Pérez-Serrano, David"},{"full_name":"Trajkovik, Vladimir","last_name":"Trajkovik","first_name":"Vladimir"},{"last_name":"Klucar","first_name":"Lubos","full_name":"Klucar, Lubos"},{"full_name":"Loncar-Turukalo, Tatjana","last_name":"Loncar-Turukalo","first_name":"Tatjana"},{"full_name":"Havulinna, Aki S.","last_name":"Havulinna","first_name":"Aki S."},{"full_name":"Jansen, Christian","id":"837b2259-bcc9-11ed-a196-ae55927bc6e2","first_name":"Christian","last_name":"Jansen"},{"full_name":"Bertelsen, Randi J.","first_name":"Randi J.","last_name":"Bertelsen"},{"last_name":"Claesson","first_name":"Marcus Joakim","full_name":"Claesson, Marcus Joakim"}],"day":"25","article_number":"1257002","status":"public","title":"Advancing microbiome research with machine learning: Key findings from the ML4Microbiome COST action","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"volume":14,"scopus_import":"1","month":"09","date_published":"2023-09-25T00:00:00Z","article_type":"original","publisher":"Frontiers","date_updated":"2023-12-13T13:07:21Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","citation":{"ama":"D’Elia D, Truu J, Lahti L, et al. Advancing microbiome research with machine learning: Key findings from the ML4Microbiome COST action. Frontiers in Microbiology. 2023;14. doi:10.3389/fmicb.2023.1257002","apa":"D’Elia, D., Truu, J., Lahti, L., Berland, M., Papoutsoglou, G., Ceci, M., … Claesson, M. J. (2023). Advancing microbiome research with machine learning: Key findings from the ML4Microbiome COST action. Frontiers in Microbiology. Frontiers. https://doi.org/10.3389/fmicb.2023.1257002","short":"D. D’Elia, J. Truu, L. Lahti, M. Berland, G. Papoutsoglou, M. Ceci, A. Zomer, M.B. Lopes, E. Ibrahimi, A. Gruca, A. Nechyporenko, M. Frohme, T. Klammsteiner, E.C.D.S. Pau, L.J. Marcos-Zambrano, K. Hron, G. Pio, A. Simeon, R. Suharoschi, I. Moreno-Indias, A. Temko, M. Nedyalkova, E.S. Apostol, C.O. Truică, R. Shigdel, J.H. Telalović, E. Bongcam-Rudloff, P. Przymus, N.B. Jordamović, L. Falquet, S. Tarazona, A. Sampri, G. Isola, D. Pérez-Serrano, V. Trajkovik, L. Klucar, T. Loncar-Turukalo, A.S. Havulinna, C. Jansen, R.J. Bertelsen, M.J. Claesson, Frontiers in Microbiology 14 (2023).","chicago":"D’Elia, Domenica, Jaak Truu, Leo Lahti, Magali Berland, Georgios Papoutsoglou, Michelangelo Ceci, Aldert Zomer, et al. “Advancing Microbiome Research with Machine Learning: Key Findings from the ML4Microbiome COST Action.” Frontiers in Microbiology. Frontiers, 2023. https://doi.org/10.3389/fmicb.2023.1257002.","ieee":"D. D’Elia et al., “Advancing microbiome research with machine learning: Key findings from the ML4Microbiome COST action,” Frontiers in Microbiology, vol. 14. Frontiers, 2023.","ista":"D’Elia D, Truu J, Lahti L, Berland M, Papoutsoglou G, Ceci M, Zomer A, Lopes MB, Ibrahimi E, Gruca A, Nechyporenko A, Frohme M, Klammsteiner T, Pau ECDS, Marcos-Zambrano LJ, Hron K, Pio G, Simeon A, Suharoschi R, Moreno-Indias I, Temko A, Nedyalkova M, Apostol ES, Truică CO, Shigdel R, Telalović JH, Bongcam-Rudloff E, Przymus P, Jordamović NB, Falquet L, Tarazona S, Sampri A, Isola G, Pérez-Serrano D, Trajkovik V, Klucar L, Loncar-Turukalo T, Havulinna AS, Jansen C, Bertelsen RJ, Claesson MJ. 2023. Advancing microbiome research with machine learning: Key findings from the ML4Microbiome COST action. Frontiers in Microbiology. 14, 1257002.","mla":"D’Elia, Domenica, et al. “Advancing Microbiome Research with Machine Learning: Key Findings from the ML4Microbiome COST Action.” Frontiers in Microbiology, vol. 14, 1257002, Frontiers, 2023, doi:10.3389/fmicb.2023.1257002."},"doi":"10.3389/fmicb.2023.1257002","quality_controlled":"1","acknowledgement":"This study is based upon work from COST Action ML4Microbiome “Statistical and machine learning techniques in human microbiome studies” (CA18131), supported by COST (European Cooperation in Science and Technology), www.cost.eu. MB acknowledges support through the Metagenopolis grant ANR-11-DPBS-0001. IM-I acknowledges support by the “Miguel Servet Type II” program (CPII21/00013) of the ISCIII-Madrid (Spain), co-financed by the FEDER.\r\nThe authors are grateful to all COST Action CA18131 “Statistical and machine learning techniques in human microbiome studies” members for their contribution to the COST Action objectives, and to COST (European Cooperation in Science and Technology) for the economic support, www.cost.eu. WG2 and WG3 thank Emmanuelle Le Chatelier and Pauline Barbet (Université Paris-Saclay, INRAE, MetaGenoPolis, 78350, Jouy-en-Josas, France) for preparing the shotgun CRC benchmark dataset.","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1664-302X"]},"year":"2023","pmid":1,"intvolume":" 14","has_accepted_license":"1","external_id":{"isi":["001080536000001"],"pmid":["37808321"]},"isi":1,"file":[{"file_id":"14471","access_level":"open_access","date_created":"2023-10-30T13:38:48Z","content_type":"application/pdf","success":1,"file_name":"2023_FrontiersMicrobiology_DElia.pdf","relation":"main_file","checksum":"6c0acdd8fa111a699826957b8dff19d5","file_size":505078,"creator":"dernst","date_updated":"2023-10-30T13:38:48Z"}],"oa":1,"ddc":["000"],"abstract":[{"text":"The rapid development of machine learning (ML) techniques has opened up the data-dense field of microbiome research for novel therapeutic, diagnostic, and prognostic applications targeting a wide range of disorders, which could substantially improve healthcare practices in the era of precision medicine. However, several challenges must be addressed to exploit the benefits of ML in this field fully. In particular, there is a need to establish “gold standard” protocols for conducting ML analysis experiments and improve interactions between microbiome researchers and ML experts. The Machine Learning Techniques in Human Microbiome Studies (ML4Microbiome) COST Action CA18131 is a European network established in 2019 to promote collaboration between discovery-oriented microbiome researchers and data-driven ML experts to optimize and standardize ML approaches for microbiome analysis. This perspective paper presents the key achievements of ML4Microbiome, which include identifying predictive and discriminatory ‘omics’ features, improving repeatability and comparability, developing automation procedures, and defining priority areas for the novel development of ML methods targeting the microbiome. The insights gained from ML4Microbiome will help to maximize the potential of ML in microbiome research and pave the way for new and improved healthcare practices.","lang":"eng"}]},{"title":"Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading","status":"public","day":"05","author":[{"full_name":"Cornalba, Federico","orcid":"0000-0002-6269-5149","id":"2CEB641C-A400-11E9-A717-D712E6697425","first_name":"Federico","last_name":"Cornalba"},{"full_name":"Disselkamp, Constantin","first_name":"Constantin","last_name":"Disselkamp"},{"full_name":"Scassola, Davide","last_name":"Scassola","first_name":"Davide"},{"last_name":"Helf","first_name":"Christopher","full_name":"Helf, Christopher"}],"department":[{"_id":"JuFi"}],"project":[{"name":"Taming Complexity in Partial Differential Systems","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","grant_number":"F6504"},{"_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","grant_number":"754411"}],"date_created":"2023-10-22T22:01:16Z","oa_version":"Published Version","article_processing_charge":"Yes (via OA deal)","_id":"14451","type":"journal_article","publication":"Neural Computing and Applications","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"epub_ahead","publisher":"Springer Nature","date_updated":"2023-10-31T10:58:28Z","date_published":"2023-10-05T00:00:00Z","month":"10","article_type":"original","scopus_import":"1","main_file_link":[{"url":"https://doi.org/10.1007/s00521-023-09033-7","open_access":"1"}],"arxiv":1,"year":"2023","publication_identifier":{"eissn":["1433-3058"],"issn":["0941-0643"]},"language":[{"iso":"eng"}],"acknowledgement":"Open access funding provided by Università degli Studi di Trieste within the CRUI-CARE Agreement. Funding was provided by Austrian Science Fund (Grant No. F65), Horizon 2020 (Grant No. 754411) and Österreichische Forschungsförderungsgesellschaft.","citation":{"ista":"Cornalba F, Disselkamp C, Scassola D, Helf C. 2023. Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading. Neural Computing and Applications.","ieee":"F. Cornalba, C. Disselkamp, D. Scassola, and C. Helf, “Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading,” Neural Computing and Applications. Springer Nature, 2023.","mla":"Cornalba, Federico, et al. “Multi-Objective Reward Generalization: Improving Performance of Deep Reinforcement Learning for Applications in Single-Asset Trading.” Neural Computing and Applications, Springer Nature, 2023, doi:10.1007/s00521-023-09033-7.","apa":"Cornalba, F., Disselkamp, C., Scassola, D., & Helf, C. (2023). Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading. Neural Computing and Applications. Springer Nature. https://doi.org/10.1007/s00521-023-09033-7","chicago":"Cornalba, Federico, Constantin Disselkamp, Davide Scassola, and Christopher Helf. “Multi-Objective Reward Generalization: Improving Performance of Deep Reinforcement Learning for Applications in Single-Asset Trading.” Neural Computing and Applications. Springer Nature, 2023. https://doi.org/10.1007/s00521-023-09033-7.","short":"F. Cornalba, C. Disselkamp, D. Scassola, C. Helf, Neural Computing and Applications (2023).","ama":"Cornalba F, Disselkamp C, Scassola D, Helf C. Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading. Neural Computing and Applications. 2023. doi:10.1007/s00521-023-09033-7"},"doi":"10.1007/s00521-023-09033-7","ec_funded":1,"quality_controlled":"1","oa":1,"abstract":[{"text":"We investigate the potential of Multi-Objective, Deep Reinforcement Learning for stock and cryptocurrency single-asset trading: in particular, we consider a Multi-Objective algorithm which generalizes the reward functions and discount factor (i.e., these components are not specified a priori, but incorporated in the learning process). Firstly, using several important assets (BTCUSD, ETHUSDT, XRPUSDT, AAPL, SPY, NIFTY50), we verify the reward generalization property of the proposed Multi-Objective algorithm, and provide preliminary statistical evidence showing increased predictive stability over the corresponding Single-Objective strategy. Secondly, we show that the Multi-Objective algorithm has a clear edge over the corresponding Single-Objective strategy when the reward mechanism is sparse (i.e., when non-null feedback is infrequent over time). Finally, we discuss the generalization properties with respect to the discount factor. The entirety of our code is provided in open-source format.","lang":"eng"}],"external_id":{"arxiv":["2203.04579"]}},{"status":"public","article_number":"iyad133","volume":225,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"title":"The infinitesimal model with dominance","day":"01","department":[{"_id":"NiBa"}],"author":[{"last_name":"Barton","first_name":"Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8548-5240","full_name":"Barton, Nicholas H"},{"full_name":"Etheridge, Alison M.","first_name":"Alison M.","last_name":"Etheridge"},{"first_name":"Amandine","last_name":"Véber","full_name":"Véber, Amandine"}],"publication":"Genetics","file_date_updated":"2023-10-30T12:57:53Z","issue":"2","_id":"14452","type":"journal_article","article_processing_charge":"Yes (in subscription journal)","date_created":"2023-10-29T23:01:15Z","oa_version":"Published Version","project":[{"grant_number":"250152","call_identifier":"FP7","_id":"25B07788-B435-11E9-9278-68D0E5697425","name":"Limits to selection in biology and in evolutionary computation"},{"_id":"bd6958e0-d553-11ed-ba76-86eba6a76c00","name":"Understanding the evolution of continuous genomes","grant_number":"101055327"}],"date_updated":"2025-05-28T11:42:48Z","publisher":"Oxford Academic","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","month":"10","date_published":"2023-10-01T00:00:00Z","scopus_import":"1","intvolume":" 225","arxiv":1,"has_accepted_license":"1","publication_identifier":{"eissn":["1943-2631"],"issn":["0016-6731"]},"language":[{"iso":"eng"}],"year":"2023","acknowledgement":"NHB was supported in part by ERC Grants 250152 and 101055327. AV was partly supported by the chaire Modélisation Mathématique et Biodiversité of Veolia Environment—Ecole Polytechnique—Museum National d’Histoire Naturelle—Fondation X.","related_material":{"record":[{"status":"public","id":"12949","relation":"research_data"}]},"quality_controlled":"1","ec_funded":1,"doi":"10.1093/genetics/iyad133","citation":{"chicago":"Barton, Nicholas H, Alison M. Etheridge, and Amandine Véber. “The Infinitesimal Model with Dominance.” Genetics. Oxford Academic, 2023. https://doi.org/10.1093/genetics/iyad133.","short":"N.H. Barton, A.M. Etheridge, A. Véber, Genetics 225 (2023).","apa":"Barton, N. H., Etheridge, A. M., & Véber, A. (2023). The infinitesimal model with dominance. Genetics. Oxford Academic. https://doi.org/10.1093/genetics/iyad133","mla":"Barton, Nicholas H., et al. “The Infinitesimal Model with Dominance.” Genetics, vol. 225, no. 2, iyad133, Oxford Academic, 2023, doi:10.1093/genetics/iyad133.","ista":"Barton NH, Etheridge AM, Véber A. 2023. The infinitesimal model with dominance. Genetics. 225(2), iyad133.","ieee":"N. H. Barton, A. M. Etheridge, and A. Véber, “The infinitesimal model with dominance,” Genetics, vol. 225, no. 2. Oxford Academic, 2023.","ama":"Barton NH, Etheridge AM, Véber A. The infinitesimal model with dominance. Genetics. 2023;225(2). doi:10.1093/genetics/iyad133"},"file":[{"file_id":"14469","access_level":"open_access","date_created":"2023-10-30T12:57:53Z","success":1,"content_type":"application/pdf","file_name":"2023_Genetics_Barton.pdf","relation":"main_file","file_size":1439032,"checksum":"3f65b1fbe813e2f4dbb5d2b5e891844a","creator":"dernst","date_updated":"2023-10-30T12:57:53Z"}],"abstract":[{"text":"The classical infinitesimal model is a simple and robust model for the inheritance of quantitative traits. In this model, a quantitative trait is expressed as the sum of a genetic and an environmental component, and the genetic component of offspring traits within a family follows a normal distribution around the average of the parents’ trait values, and has a variance that is independent of the parental traits. In previous work, we showed that when trait values are determined by the sum of a large number of additive Mendelian factors, each of small effect, one can justify the infinitesimal model as a limit of Mendelian inheritance. In this paper, we show that this result extends to include dominance. We define the model in terms of classical quantities of quantitative genetics, before justifying it as a limit of Mendelian inheritance as the number, M, of underlying loci tends to infinity. As in the additive case, the multivariate normal distribution of trait values across the pedigree can be expressed in terms of variance components in an ancestral population and probabilities of identity by descent determined by the pedigree. Now, with just first-order dominance effects, we require two-, three-, and four-way identities. We also show that, even if we condition on parental trait values, the “shared” and “residual” components of trait values within each family will be asymptotically normally distributed as the number of loci tends to infinity, with an error of order 1/M−−√⁠. We illustrate our results with some numerical examples.","lang":"eng"}],"oa":1,"ddc":["570"],"external_id":{"arxiv":["2211.03515"]}},{"article_type":"original","month":"10","date_published":"2023-10-01T00:00:00Z","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2023-12-13T13:06:40Z","publisher":"Wiley","scopus_import":"1","day":"01","volume":15,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"title":"Extreme precipitation in tropical squall lines","status":"public","article_number":"e2022MS003477","date_created":"2023-10-29T23:01:15Z","oa_version":"Published Version","project":[{"call_identifier":"H2020","grant_number":"805041","_id":"629205d8-2b32-11ec-9570-e1356ff73576","name":"organization of CLoUdS, and implications of Tropical cyclones and for the Energetics of the tropics, in current and waRming climate"}],"file_date_updated":"2023-10-30T13:31:42Z","publication":"Journal of Advances in Modeling Earth Systems","_id":"14453","issue":"10","article_processing_charge":"Yes","type":"journal_article","author":[{"first_name":"Sophie","last_name":"Abramian","full_name":"Abramian, Sophie"},{"id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","first_name":"Caroline J","last_name":"Muller","full_name":"Muller, Caroline J","orcid":"0000-0001-5836-5350"},{"first_name":"Camille","last_name":"Risi","full_name":"Risi, Camille"}],"department":[{"_id":"CaMu"}],"abstract":[{"lang":"eng","text":"Squall lines are substantially influenced by the interaction of low-level shear with cold pools associated with convective downdrafts. Beyond an optimal shear amplitude, squall lines tend to orient themselves at an angle with respect to the low-level shear. While the mechanisms behind squall line orientation seem to be increasingly well understood, uncertainties remain on the implications of this orientation. Roca and Fiolleau (2020, https://doi.org/10.1038/s43247-020-00015-4) show that long lived mesoscale convective systems, including squall lines, are disproportionately involved in rainfall extremes in the tropics. This article investigates the influence of the interaction between low-level shear and squall line outflow on squall line generated precipitation extrema in the tropics. Using a cloud resolving model, simulated squall lines in radiative convective equilibrium amid a shear-dominated regime (super optimal), a balanced regime (optimal), and an outflow dominated regime (suboptimal). Our results show that precipitation extremes in squall lines are 40% more intense in the case of optimal shear and remain 30% superior in the superoptimal regime relative to a disorganized case. With a theoretical scaling of precipitation extremes (C. Muller & Takayabu, 2020, https://doi.org/10.1088/1748-9326/ab7130), we show that the condensation rates control the amplification of precipitation extremes in tropical squall lines, mainly due to its change in vertical mass flux (dynamic component). The reduction of dilution by entrainment explains half of this change, consistent with Mulholland et al. (2021, https://doi.org/10.1175/jas-d-20-0299.1). The other half is explained by increased cloud-base velocity intensity in optimal and superoptimal squall lines."}],"ddc":["550"],"oa":1,"file":[{"file_name":"2023_JAMES_Abramian.pdf","relation":"main_file","content_type":"application/pdf","success":1,"access_level":"open_access","date_created":"2023-10-30T13:31:42Z","file_id":"14470","date_updated":"2023-10-30T13:31:42Z","creator":"dernst","checksum":"43e6a1a35b663843c7d3f8d0caaca1a5","file_size":1975210}],"isi":1,"external_id":{"isi":["001084933600001"]},"year":"2023","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1942-2466"]},"has_accepted_license":"1","intvolume":" 15","quality_controlled":"1","ec_funded":1,"citation":{"ama":"Abramian S, Muller CJ, Risi C. Extreme precipitation in tropical squall lines. Journal of Advances in Modeling Earth Systems. 2023;15(10). doi:10.1029/2022MS003477","mla":"Abramian, Sophie, et al. “Extreme Precipitation in Tropical Squall Lines.” Journal of Advances in Modeling Earth Systems, vol. 15, no. 10, e2022MS003477, Wiley, 2023, doi:10.1029/2022MS003477.","ieee":"S. Abramian, C. J. Muller, and C. Risi, “Extreme precipitation in tropical squall lines,” Journal of Advances in Modeling Earth Systems, vol. 15, no. 10. Wiley, 2023.","ista":"Abramian S, Muller CJ, Risi C. 2023. Extreme precipitation in tropical squall lines. Journal of Advances in Modeling Earth Systems. 15(10), e2022MS003477.","chicago":"Abramian, Sophie, Caroline J Muller, and Camille Risi. “Extreme Precipitation in Tropical Squall Lines.” Journal of Advances in Modeling Earth Systems. Wiley, 2023. https://doi.org/10.1029/2022MS003477.","short":"S. Abramian, C.J. Muller, C. Risi, Journal of Advances in Modeling Earth Systems 15 (2023).","apa":"Abramian, S., Muller, C. J., & Risi, C. (2023). Extreme precipitation in tropical squall lines. Journal of Advances in Modeling Earth Systems. Wiley. https://doi.org/10.1029/2022MS003477"},"doi":"10.1029/2022MS003477","acknowledgement":"The authors gratefully acknowledge funding from the European Research Council under the European Union's Horizon 2020 research and innovation program (Project CLUSTER, Grant Agreement No. 805041). This work is also supported by a PhD fellowship funded by the Ecole Normale Supérieure de Paris-Saclay. Authors are also grateful to Benjamin Filider, who was of great help and support in the development of ideas. Eventually, we would like to thank Martin Singh, John M. Peters and an anonymous reviewer for their valuable comments and suggestions, which greatly improved the quality of the manuscript."},{"abstract":[{"lang":"eng","text":"As AI and machine-learned software are used increasingly for making decisions that affect humans, it is imperative that they remain fair and unbiased in their decisions. To complement design-time bias mitigation measures, runtime verification techniques have been introduced recently to monitor the algorithmic fairness of deployed systems. Previous monitoring techniques assume full observability of the states of the (unknown) monitored system. Moreover, they can monitor only fairness properties that are specified as arithmetic expressions over the probabilities of different events. In this work, we extend fairness monitoring to systems modeled as partially observed Markov chains (POMC), and to specifications containing arithmetic expressions over the expected values of numerical functions on event sequences. The only assumptions we make are that the underlying POMC is aperiodic and starts in the stationary distribution, with a bound on its mixing time being known. These assumptions enable us to estimate a given property for the entire distribution of possible executions of the monitored POMC, by observing only a single execution. Our monitors observe a long run of the system and, after each new observation, output updated PAC-estimates of how fair or biased the system is. The monitors are computationally lightweight and, using a prototype implementation, we demonstrate their effectiveness on several real-world examples."}],"oa":1,"page":"291-311","alternative_title":["LNCS"],"external_id":{"arxiv":["2308.00341"]},"year":"2023","language":[{"iso":"eng"}],"publication_identifier":{"issn":["0302-9743"],"eissn":["1611-3349"],"isbn":["9783031442667"]},"intvolume":" 14245","arxiv":1,"quality_controlled":"1","ec_funded":1,"doi":"10.1007/978-3-031-44267-4_15","citation":{"ama":"Henzinger TA, Kueffner K, Mallik K. Monitoring algorithmic fairness under partial observations. In: 23rd International Conference on Runtime Verification. Vol 14245. Springer Nature; 2023:291-311. doi:10.1007/978-3-031-44267-4_15","mla":"Henzinger, Thomas A., et al. “Monitoring Algorithmic Fairness under Partial Observations.” 23rd International Conference on Runtime Verification, vol. 14245, Springer Nature, 2023, pp. 291–311, doi:10.1007/978-3-031-44267-4_15.","ista":"Henzinger TA, Kueffner K, Mallik K. 2023. Monitoring algorithmic fairness under partial observations. 23rd International Conference on Runtime Verification. RV: Conference on Runtime Verification, LNCS, vol. 14245, 291–311.","ieee":"T. A. Henzinger, K. Kueffner, and K. Mallik, “Monitoring algorithmic fairness under partial observations,” in 23rd International Conference on Runtime Verification, Thessaloniki, Greece, 2023, vol. 14245, pp. 291–311.","chicago":"Henzinger, Thomas A, Konstantin Kueffner, and Kaushik Mallik. “Monitoring Algorithmic Fairness under Partial Observations.” In 23rd International Conference on Runtime Verification, 14245:291–311. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-44267-4_15.","short":"T.A. Henzinger, K. Kueffner, K. Mallik, in:, 23rd International Conference on Runtime Verification, Springer Nature, 2023, pp. 291–311.","apa":"Henzinger, T. A., Kueffner, K., & Mallik, K. (2023). Monitoring algorithmic fairness under partial observations. In 23rd International Conference on Runtime Verification (Vol. 14245, pp. 291–311). Thessaloniki, Greece: Springer Nature. https://doi.org/10.1007/978-3-031-44267-4_15"},"acknowledgement":"This work is supported by the European Research Council under Grant No.: ERC-2020-AdG 101020093.","conference":{"location":"Thessaloniki, Greece","end_date":"2023-10-06","start_date":"2023-10-03","name":"RV: Conference on Runtime Verification"},"date_published":"2023-10-01T00:00:00Z","month":"10","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2023-10-31T11:48:20Z","publisher":"Springer Nature","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2308.00341"}],"scopus_import":"1","day":"01","title":"Monitoring algorithmic fairness under partial observations","volume":14245,"status":"public","oa_version":"Preprint","date_created":"2023-10-29T23:01:15Z","project":[{"call_identifier":"H2020","grant_number":"101020093","_id":"62781420-2b32-11ec-9570-8d9b63373d4d","name":"Vigilant Algorithmic Monitoring of Software"}],"publication":"23rd International Conference on Runtime Verification","_id":"14454","article_processing_charge":"No","type":"conference","author":[{"orcid":"0000-0002-2985-7724","full_name":"Henzinger, Thomas A","last_name":"Henzinger","first_name":"Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Kueffner","id":"8121a2d0-dc85-11ea-9058-af578f3b4515","first_name":"Konstantin","full_name":"Kueffner, Konstantin","orcid":"0000-0001-8974-2542"},{"orcid":"0000-0001-9864-7475","full_name":"Mallik, Kaushik","id":"0834ff3c-6d72-11ec-94e0-b5b0a4fb8598","first_name":"Kaushik","last_name":"Mallik"}],"department":[{"_id":"ToHe"}]}]