[{"related_material":{"record":[{"id":"1262","relation":"used_in_publication","status":"public"}]},"oa":1,"date_created":"2021-07-23T08:30:38Z","_id":"9704","type":"research_data_reference","status":"public","day":"06","year":"2016","doi":"10.5061/dryad.cq7t1","main_file_link":[{"url":"https://doi.org/10.5061/dryad.cq7t1","open_access":"1"}],"abstract":[{"lang":"eng","text":"Emerging infectious diseases (EIDs) have contributed significantly to the current biodiversity crisis, leading to widespread epidemics and population loss. Owing to genetic variation in pathogen virulence, a complete understanding of species decline requires the accurate identification and characterization of EIDs. We explore this issue in the Western honeybee, where increasing mortality of populations in the Northern Hemisphere has caused major concern. Specifically, we investigate the importance of genetic identity of the main suspect in mortality, deformed wing virus (DWV), in driving honeybee loss. Using laboratory experiments and a systematic field survey, we demonstrate that an emerging DWV genotype (DWV-B) is more virulent than the established DWV genotype (DWV-A) and is widespread in the landscape. Furthermore, we show in a simple model that colonies infected with DWV-B collapse sooner than colonies infected with DWV-A. We also identify potential for rapid DWV evolution by revealing extensive genome-wide recombination in vivo. The emergence of DWV-B in naive honeybee populations, including via recombination with DWV-A, could be of significant ecological and economic importance. Our findings emphasize that knowledge of pathogen genetic identity and diversity is critical to understanding drivers of species decline."}],"month":"05","date_published":"2016-05-06T00:00:00Z","publisher":"Dryad","article_processing_charge":"No","title":"Data from: Elevated virulence of an emerging viral genotype as a driver of honeybee loss","date_updated":"2023-02-21T16:54:31Z","department":[{"_id":"SyCr"}],"citation":{"ieee":"D. Mcmahon <i>et al.</i>, “Data from: Elevated virulence of an emerging viral genotype as a driver of honeybee loss.” Dryad, 2016.","apa":"Mcmahon, D., Natsopoulou, M., Doublet, V., Fürst, M., Weging, S., Brown, M., … Paxton, R. (2016). Data from: Elevated virulence of an emerging viral genotype as a driver of honeybee loss. Dryad. <a href=\"https://doi.org/10.5061/dryad.cq7t1\">https://doi.org/10.5061/dryad.cq7t1</a>","chicago":"Mcmahon, Dino, Myrsini Natsopoulou, Vincent Doublet, Matthias Fürst, Silvio Weging, Mark Brown, Andreas Gogol Döring, and Robert Paxton. “Data from: Elevated Virulence of an Emerging Viral Genotype as a Driver of Honeybee Loss.” Dryad, 2016. <a href=\"https://doi.org/10.5061/dryad.cq7t1\">https://doi.org/10.5061/dryad.cq7t1</a>.","ista":"Mcmahon D, Natsopoulou M, Doublet V, Fürst M, Weging S, Brown M, Gogol Döring A, Paxton R. 2016. Data from: Elevated virulence of an emerging viral genotype as a driver of honeybee loss, Dryad, <a href=\"https://doi.org/10.5061/dryad.cq7t1\">10.5061/dryad.cq7t1</a>.","ama":"Mcmahon D, Natsopoulou M, Doublet V, et al. Data from: Elevated virulence of an emerging viral genotype as a driver of honeybee loss. 2016. doi:<a href=\"https://doi.org/10.5061/dryad.cq7t1\">10.5061/dryad.cq7t1</a>","mla":"Mcmahon, Dino, et al. <i>Data from: Elevated Virulence of an Emerging Viral Genotype as a Driver of Honeybee Loss</i>. Dryad, 2016, doi:<a href=\"https://doi.org/10.5061/dryad.cq7t1\">10.5061/dryad.cq7t1</a>.","short":"D. Mcmahon, M. Natsopoulou, V. Doublet, M. Fürst, S. Weging, M. Brown, A. Gogol Döring, R. Paxton, (2016)."},"oa_version":"Published Version","author":[{"first_name":"Dino","last_name":"Mcmahon","full_name":"Mcmahon, Dino"},{"first_name":"Myrsini","last_name":"Natsopoulou","full_name":"Natsopoulou, Myrsini"},{"full_name":"Doublet, Vincent","last_name":"Doublet","first_name":"Vincent"},{"orcid":"0000-0002-3712-925X","first_name":"Matthias","last_name":"Fürst","full_name":"Fürst, Matthias","id":"393B1196-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Silvio","last_name":"Weging","full_name":"Weging, Silvio"},{"first_name":"Mark","last_name":"Brown","full_name":"Brown, Mark"},{"last_name":"Gogol Döring","first_name":"Andreas","full_name":"Gogol Döring, Andreas"},{"full_name":"Paxton, Robert","last_name":"Paxton","first_name":"Robert"}],"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf"},{"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","author":[{"full_name":"Barton, Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8548-5240","first_name":"Nicholas H","last_name":"Barton"}],"oa_version":"Published Version","citation":{"apa":"Barton, N. H. (2016). Data from: How does epistasis influence the response to selection? Dryad. <a href=\"https://doi.org/10.5061/dryad.s5s7r\">https://doi.org/10.5061/dryad.s5s7r</a>","ista":"Barton NH. 2016. Data from: How does epistasis influence the response to selection?, Dryad, <a href=\"https://doi.org/10.5061/dryad.s5s7r\">10.5061/dryad.s5s7r</a>.","chicago":"Barton, Nicholas H. “Data from: How Does Epistasis Influence the Response to Selection?” Dryad, 2016. <a href=\"https://doi.org/10.5061/dryad.s5s7r\">https://doi.org/10.5061/dryad.s5s7r</a>.","ama":"Barton NH. Data from: How does epistasis influence the response to selection? 2016. doi:<a href=\"https://doi.org/10.5061/dryad.s5s7r\">10.5061/dryad.s5s7r</a>","ieee":"N. H. Barton, “Data from: How does epistasis influence the response to selection?” Dryad, 2016.","mla":"Barton, Nicholas H. <i>Data from: How Does Epistasis Influence the Response to Selection?</i> Dryad, 2016, doi:<a href=\"https://doi.org/10.5061/dryad.s5s7r\">10.5061/dryad.s5s7r</a>.","short":"N.H. Barton, (2016)."},"department":[{"_id":"NiBa"}],"date_updated":"2025-05-28T11:57:03Z","title":"Data from: How does epistasis influence the response to selection?","article_processing_charge":"No","date_published":"2016-09-23T00:00:00Z","publisher":"Dryad","month":"09","abstract":[{"text":"Much of quantitative genetics is based on the ‘infinitesimal model’, under which selection has a negligible effect on the genetic variance. This is typically justified by assuming a very large number of loci with additive effects. However, it applies even when genes interact, provided that the number of loci is large enough that selection on each of them is weak relative to random drift. In the long term, directional selection will change allele frequencies, but even then, the effects of epistasis on the ultimate change in trait mean due to selection may be modest. Stabilising selection can maintain many traits close to their optima, even when the underlying alleles are weakly selected. However, the number of traits that can be optimised is apparently limited to ~4Ne by the ‘drift load’, and this is hard to reconcile with the apparent complexity of many organisms. Just as for the mutation load, this limit can be evaded by a particular form of negative epistasis. A more robust limit is set by the variance in reproductive success. This suggests that selection accumulates information most efficiently in the infinitesimal regime, when selection on individual alleles is weak, and comparable with random drift. A review of evidence on selection strength suggests that although most variance in fitness may be because of alleles with large Nes, substantial amounts of adaptation may be because of alleles in the infinitesimal regime, in which epistasis has modest effects.","lang":"eng"}],"year":"2016","doi":"10.5061/dryad.s5s7r","main_file_link":[{"url":"https://doi.org/10.5061/dryad.s5s7r","open_access":"1"}],"day":"23","status":"public","type":"research_data_reference","_id":"9710","date_created":"2021-07-23T11:45:47Z","oa":1,"related_material":{"record":[{"status":"public","id":"1199","relation":"used_in_publication"}]}},{"date_published":"2016-01-22T00:00:00Z","publisher":"Dryad","title":"Data from: A sting in the spit: widespread cross-infection of multiple RNA viruses across wild and managed bees","article_processing_charge":"No","month":"01","abstract":[{"text":"Summary: Declining populations of bee pollinators are a cause of concern, with major repercussions for biodiversity loss and food security. RNA viruses associated with honeybees represent a potential threat to other insect pollinators, but the extent of this threat is poorly understood. This study aims to attain a detailed understanding of the current and ongoing risk of emerging infectious disease (EID) transmission between managed and wild pollinator species across a wide range of RNA viruses. Within a structured large-scale national survey across 26 independent sites, we quantify the prevalence and pathogen loads of multiple RNA viruses in co-occurring managed honeybee (Apis mellifera) and wild bumblebee (Bombus spp.) populations. We then construct models that compare virus prevalence between wild and managed pollinators. Multiple RNA viruses associated with honeybees are widespread in sympatric wild bumblebee populations. Virus prevalence in honeybees is a significant predictor of virus prevalence in bumblebees, but we remain cautious in speculating over the principle direction of pathogen transmission. We demonstrate species-specific differences in prevalence, indicating significant variation in disease susceptibility or tolerance. Pathogen loads within individual bumblebees may be high and in the case of at least one RNA virus, prevalence is higher in wild bumblebees than in managed honeybee populations. Our findings indicate widespread transmission of RNA viruses between managed and wild bee pollinators, pointing to an interconnected network of potential disease pressures within and among pollinator species. In the context of the biodiversity crisis, our study emphasizes the importance of targeting a wide range of pathogens and defining host associations when considering potential drivers of population decline.","lang":"eng"}],"author":[{"full_name":"Mcmahon, Dino","first_name":"Dino","last_name":"Mcmahon"},{"id":"393B1196-F248-11E8-B48F-1D18A9856A87","full_name":"Fürst, Matthias","last_name":"Fürst","first_name":"Matthias","orcid":"0000-0002-3712-925X"},{"last_name":"Caspar","first_name":"Jesicca","full_name":"Caspar, Jesicca"},{"last_name":"Theodorou","first_name":"Panagiotis","full_name":"Theodorou, Panagiotis"},{"full_name":"Brown, Mark","last_name":"Brown","first_name":"Mark"},{"full_name":"Paxton, Robert","last_name":"Paxton","first_name":"Robert"}],"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","department":[{"_id":"SyCr"}],"date_updated":"2023-02-23T10:17:25Z","oa_version":"Published Version","citation":{"short":"D. Mcmahon, M. Fürst, J. Caspar, P. Theodorou, M. Brown, R. Paxton, (2016).","mla":"Mcmahon, Dino, et al. <i>Data from: A Sting in the Spit: Widespread Cross-Infection of Multiple RNA Viruses across Wild and Managed Bees</i>. Dryad, 2016, doi:<a href=\"https://doi.org/10.5061/dryad.4b565\">10.5061/dryad.4b565</a>.","ama":"Mcmahon D, Fürst M, Caspar J, Theodorou P, Brown M, Paxton R. Data from: A sting in the spit: widespread cross-infection of multiple RNA viruses across wild and managed bees. 2016. doi:<a href=\"https://doi.org/10.5061/dryad.4b565\">10.5061/dryad.4b565</a>","ista":"Mcmahon D, Fürst M, Caspar J, Theodorou P, Brown M, Paxton R. 2016. Data from: A sting in the spit: widespread cross-infection of multiple RNA viruses across wild and managed bees, Dryad, <a href=\"https://doi.org/10.5061/dryad.4b565\">10.5061/dryad.4b565</a>.","chicago":"Mcmahon, Dino, Matthias Fürst, Jesicca Caspar, Panagiotis Theodorou, Mark Brown, and Robert Paxton. “Data from: A Sting in the Spit: Widespread Cross-Infection of Multiple RNA Viruses across Wild and Managed Bees.” Dryad, 2016. <a href=\"https://doi.org/10.5061/dryad.4b565\">https://doi.org/10.5061/dryad.4b565</a>.","apa":"Mcmahon, D., Fürst, M., Caspar, J., Theodorou, P., Brown, M., &#38; Paxton, R. (2016). Data from: A sting in the spit: widespread cross-infection of multiple RNA viruses across wild and managed bees. Dryad. <a href=\"https://doi.org/10.5061/dryad.4b565\">https://doi.org/10.5061/dryad.4b565</a>","ieee":"D. Mcmahon, M. Fürst, J. Caspar, P. Theodorou, M. Brown, and R. Paxton, “Data from: A sting in the spit: widespread cross-infection of multiple RNA viruses across wild and managed bees.” Dryad, 2016."},"related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"1855"}]},"day":"22","year":"2016","status":"public","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.4b565"}],"doi":"10.5061/dryad.4b565","date_created":"2021-07-26T09:14:19Z","oa":1,"type":"research_data_reference","_id":"9720"},{"type":"journal_article","_id":"983","oa":1,"date_created":"2018-12-11T11:49:32Z","status":"public","year":"2016","day":"01","doi":"10.1103/PhysRevX.6.031026","main_file_link":[{"url":"https://arxiv.org/abs/1512.06852","open_access":"1"}],"acknowledgement":"We thank B. I. Halperin, N. Cooper, C. Wang, J. Alicea, and M. Zaletel for insightful conversations. A. C. P. and M. S. were supported by the Gordon and Betty Moore Foundation’s EPiQS Initiative through Grant No. GBMF4307. A. V. was supported by a Simons Investigator grant.","publication":"Physical Review X","publist_id":"6417","intvolume":"         6","citation":{"chicago":"Potter, Andrew, Maksym Serbyn, and Ashvin Vishwanath. “Thermoelectric Transport Signatures of Dirac Composite Fermions in the Half-Filled Landau Level.” <i>Physical Review X</i>. American Physical Society, 2016. <a href=\"https://doi.org/10.1103/PhysRevX.6.031026\">https://doi.org/10.1103/PhysRevX.6.031026</a>.","ista":"Potter A, Serbyn M, Vishwanath A. 2016. Thermoelectric transport signatures of Dirac composite fermions in the half-filled Landau level. Physical Review X. 6(3).","ama":"Potter A, Serbyn M, Vishwanath A. Thermoelectric transport signatures of Dirac composite fermions in the half-filled Landau level. <i>Physical Review X</i>. 2016;6(3). doi:<a href=\"https://doi.org/10.1103/PhysRevX.6.031026\">10.1103/PhysRevX.6.031026</a>","apa":"Potter, A., Serbyn, M., &#38; Vishwanath, A. (2016). Thermoelectric transport signatures of Dirac composite fermions in the half-filled Landau level. <i>Physical Review X</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevX.6.031026\">https://doi.org/10.1103/PhysRevX.6.031026</a>","ieee":"A. Potter, M. Serbyn, and A. Vishwanath, “Thermoelectric transport signatures of Dirac composite fermions in the half-filled Landau level,” <i>Physical Review X</i>, vol. 6, no. 3. American Physical Society, 2016.","mla":"Potter, Andrew, et al. “Thermoelectric Transport Signatures of Dirac Composite Fermions in the Half-Filled Landau Level.” <i>Physical Review X</i>, vol. 6, no. 3, American Physical Society, 2016, doi:<a href=\"https://doi.org/10.1103/PhysRevX.6.031026\">10.1103/PhysRevX.6.031026</a>.","short":"A. Potter, M. Serbyn, A. Vishwanath, Physical Review X 6 (2016)."},"quality_controlled":0,"extern":1,"date_updated":"2021-01-12T08:22:25Z","author":[{"first_name":"Andrew","last_name":"Potter","full_name":"Potter, Andrew C"},{"full_name":"Maksym Serbyn","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2399-5827","last_name":"Serbyn","first_name":"Maksym"},{"last_name":"Vishwanath","first_name":"Ashvin","full_name":"Vishwanath, Ashvin K"}],"issue":"3","month":"01","publication_status":"published","abstract":[{"text":"The half-filled Landau level is expected to be approximately particle-hole symmetric, which requires an extension of the Halperin-Lee-Read (HLR) theory of the compressible state observed at this filling. Recent work indicates that, when particle-hole symmetry is preserved, the composite fermions experience a quantized π-Berry phase upon winding around the composite Fermi surface, analogous to Dirac fermions at the surface of a 3D topological insulator. In contrast, the effective low-energy theory of the composite fermion liquid originally proposed by HLR lacks particle-hole symmetry and has vanishing Berry phase. In this paper, we explain how thermoelectric transport measurements can be used to test the Dirac nature of the composite fermions by quantitatively extracting this Berry phase. First, we point out that longitudinal thermopower (Seebeck effect) is nonvanishing because of the unusual nature of particle-hole symmetry in this context and is not sensitive to the Berry phase. In contrast, we find that off-diagonal thermopower (Nernst effect) is directly related to the topological structure of the composite Fermi surface, vanishing for zero Berry phase and taking its maximal value for π Berry phase. In contrast, in purely electrical transport signatures, the Berry phase contributions appear as small corrections to a large background signal, making the Nernst effect a promising diagnostic of the Dirac nature of composite fermions.","lang":"eng"}],"title":"Thermoelectric transport signatures of Dirac composite fermions in the half-filled Landau level","volume":6,"publisher":"American Physical Society","date_published":"2016-01-01T00:00:00Z"},{"title":"Power-law entanglement spectrum in many-body localized phases","volume":117,"date_published":"2016-10-16T00:00:00Z","publisher":"American Physical Society","issue":"16","abstract":[{"lang":"eng","text":"The entanglement spectrum of the reduced density matrix contains information beyond the von Neumann entropy and provides unique insights into exotic orders or critical behavior of quantum systems. Here, we show that strongly disordered systems in the many-body localized phase have power-law entanglement spectra, arising from the presence of extensively many local integrals of motion. The power-law entanglement spectrum distinguishes many-body localized systems from ergodic systems, as well as from ground states of gapped integrable models or free systems in the vicinity of scale-invariant critical points. We confirm our results using large-scale exact diagonalization. In addition, we develop a matrix-product state algorithm which allows us to access the eigenstates of large systems close to the localization transition, and discuss general implications of our results for variational studies of highly excited eigenstates in many-body localized systems."}],"month":"10","publication_status":"published","author":[{"full_name":"Maksym Serbyn","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2399-5827","last_name":"Serbyn","first_name":"Maksym"},{"full_name":"Alexios Michailidis","id":"36EBAD38-F248-11E8-B48F-1D18A9856A87","last_name":"Michailidis","first_name":"Alexios"},{"full_name":"Abanin, Dmitry A","first_name":"Dmitry","last_name":"Abanin"},{"first_name":"Zlatko","last_name":"Papić","full_name":"Papić, Zlatko"}],"citation":{"apa":"Serbyn, M., Michailidis, A., Abanin, D., &#38; Papić, Z. (2016). Power-law entanglement spectrum in many-body localized phases. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.117.160601\">https://doi.org/10.1103/PhysRevLett.117.160601</a>","ama":"Serbyn M, Michailidis A, Abanin D, Papić Z. Power-law entanglement spectrum in many-body localized phases. <i>Physical Review Letters</i>. 2016;117(16). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.117.160601\">10.1103/PhysRevLett.117.160601</a>","ista":"Serbyn M, Michailidis A, Abanin D, Papić Z. 2016. Power-law entanglement spectrum in many-body localized phases. Physical Review Letters. 117(16).","chicago":"Serbyn, Maksym, Alexios Michailidis, Dmitry Abanin, and Zlatko Papić. “Power-Law Entanglement Spectrum in Many-Body Localized Phases.” <i>Physical Review Letters</i>. American Physical Society, 2016. <a href=\"https://doi.org/10.1103/PhysRevLett.117.160601\">https://doi.org/10.1103/PhysRevLett.117.160601</a>.","ieee":"M. Serbyn, A. Michailidis, D. Abanin, and Z. Papić, “Power-law entanglement spectrum in many-body localized phases,” <i>Physical Review Letters</i>, vol. 117, no. 16. American Physical Society, 2016.","mla":"Serbyn, Maksym, et al. “Power-Law Entanglement Spectrum in Many-Body Localized Phases.” <i>Physical Review Letters</i>, vol. 117, no. 16, American Physical Society, 2016, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.117.160601\">10.1103/PhysRevLett.117.160601</a>.","short":"M. Serbyn, A. Michailidis, D. Abanin, Z. Papić, Physical Review Letters 117 (2016)."},"date_updated":"2021-01-12T08:22:25Z","extern":1,"quality_controlled":0,"publication":"Physical Review Letters","intvolume":"       117","publist_id":"6414","year":"2016","doi":"10.1103/PhysRevLett.117.160601","day":"16","status":"public","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1605.05737"}],"acknowledgement":"We thank M. Stoudenmire and C. Turner for useful discussions. M. S. was supported by Gordon and Betty Moore Foundation's EPiQS Initiative through Grant No. GBMF4307. This research was supported in part by the National Science Foundation under Grant No. NSF PHY11-25915, and by the Swiss National Science Foundation and Alfred Sloan Foundation (D. A.). This work made use of the facilities of N8 HPC Centre of Excellence, provided and funded by the N8 consortium and EPSRC (Grant No. EP/K000225/1). The Centre is coordinated by the Universities of Leeds and Manchester.","type":"journal_article","_id":"984","oa":1,"date_created":"2018-12-11T11:49:32Z"},{"day":"01","year":"2016","status":"public","doi":"10.1103/PhysRevLett.117.066601","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1607.00784"}],"acknowledgement":"This work has been primarily supported by the National Science Foundation (DMR-1405221) for device fabrication and transport, and partly by ONR Young Investigator Award N00014-13-1-0610 for data analysis.","_id":"985","type":"journal_article","date_created":"2018-12-11T11:49:33Z","oa":1,"publication":"Physical Review Letters","intvolume":"       117","publist_id":"6415","author":[{"first_name":"Leonardo","last_name":"Campos","full_name":"Campos, Leonardo C"},{"full_name":"Taychatanapat, Thiti","last_name":"Taychatanapat","first_name":"Thiti"},{"id":"47809E7E-F248-11E8-B48F-1D18A9856A87","full_name":"Maksym Serbyn","last_name":"Serbyn","first_name":"Maksym","orcid":"0000-0002-2399-5827"},{"full_name":"Surakitbovorn, Kawin N","first_name":"Kawin","last_name":"Surakitbovorn"},{"full_name":"Watanabe, Kenji","first_name":"Kenji","last_name":"Watanabe"},{"last_name":"Taniguchi","first_name":"Takashi","full_name":"Taniguchi, Takashi"},{"first_name":"Dmitry","last_name":"Abanin","full_name":"Abanin, Dmitry A"},{"first_name":"Pablo","last_name":"Jarillo Herrero","full_name":"Jarillo-Herrero, Pablo"}],"citation":{"ieee":"L. Campos <i>et al.</i>, “Landau Level Splittings, Phase Transitions, and Nonuniform Charge Distribution in Trilayer Graphene,” <i>Physical Review Letters</i>, vol. 117, no. 6. American Physical Society, 2016.","ista":"Campos L, Taychatanapat T, Serbyn M, Surakitbovorn K, Watanabe K, Taniguchi T, Abanin D, Jarillo Herrero P. 2016. Landau Level Splittings, Phase Transitions, and Nonuniform Charge Distribution in Trilayer Graphene. Physical Review Letters. 117(6).","ama":"Campos L, Taychatanapat T, Serbyn M, et al. Landau Level Splittings, Phase Transitions, and Nonuniform Charge Distribution in Trilayer Graphene. <i>Physical Review Letters</i>. 2016;117(6). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.117.066601\">10.1103/PhysRevLett.117.066601</a>","chicago":"Campos, Leonardo, Thiti Taychatanapat, Maksym Serbyn, Kawin Surakitbovorn, Kenji Watanabe, Takashi Taniguchi, Dmitry Abanin, and Pablo Jarillo Herrero. “Landau Level Splittings, Phase Transitions, and Nonuniform Charge Distribution in Trilayer Graphene.” <i>Physical Review Letters</i>. American Physical Society, 2016. <a href=\"https://doi.org/10.1103/PhysRevLett.117.066601\">https://doi.org/10.1103/PhysRevLett.117.066601</a>.","apa":"Campos, L., Taychatanapat, T., Serbyn, M., Surakitbovorn, K., Watanabe, K., Taniguchi, T., … Jarillo Herrero, P. (2016). Landau Level Splittings, Phase Transitions, and Nonuniform Charge Distribution in Trilayer Graphene. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.117.066601\">https://doi.org/10.1103/PhysRevLett.117.066601</a>","mla":"Campos, Leonardo, et al. “Landau Level Splittings, Phase Transitions, and Nonuniform Charge Distribution in Trilayer Graphene.” <i>Physical Review Letters</i>, vol. 117, no. 6, American Physical Society, 2016, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.117.066601\">10.1103/PhysRevLett.117.066601</a>.","short":"L. Campos, T. Taychatanapat, M. Serbyn, K. Surakitbovorn, K. Watanabe, T. Taniguchi, D. Abanin, P. Jarillo Herrero, Physical Review Letters 117 (2016)."},"date_updated":"2021-01-12T08:22:26Z","extern":1,"quality_controlled":0,"title":"Landau Level Splittings, Phase Transitions, and Nonuniform Charge Distribution in Trilayer Graphene","volume":117,"publisher":"American Physical Society","date_published":"2016-04-01T00:00:00Z","issue":"6","abstract":[{"lang":"eng","text":"We report on magnetotransport studies of dual-gated, Bernal-stacked trilayer graphene (TLG) encapsulated in boron nitride crystals. We observe a quantum Hall effect staircase which indicates a complete lifting of the 12-fold degeneracy of the zeroth Landau level. As a function of perpendicular electric field, our data exhibit a sequence of phase transitions between all integer quantum Hall states in the filling factor interval -8&lt;ν&lt;0. We develop a theoretical model and argue that, in contrast to monolayer and bilayer graphene, the observed Landau level splittings and quantum Hall phase transitions can be understood within a single-particle picture, but imply the presence of a charge density imbalance between the inner and outer layers of TLG, even at charge neutrality and zero transverse electric field. Our results indicate the importance of a previously unaccounted band structure parameter which, together with a more accurate estimate of the other tight-binding parameters, results in a significantly improved determination of the electronic and Landau level structure of TLG."}],"month":"04","publication_status":"published"},{"intvolume":"        93","publist_id":"6416","publication":"Physical Review B - Condensed Matter and Materials Physics","date_created":"2018-12-11T11:49:33Z","oa":1,"type":"journal_article","_id":"986","year":"2016","day":"29","main_file_link":[{"url":"https://arxiv.org/abs/1508.07293","open_access":"1"}],"status":"public","doi":"10.1103/PhysRevB.93.041424","abstract":[{"lang":"eng","text":"The many-body localization transition (MBLT) between ergodic and many-body localized phases in disordered interacting systems is a subject of much recent interest. The statistics of eigenenergies is known to be a powerful probe of crossovers between ergodic and integrable systems in simpler examples of quantum chaos. We consider the evolution of the spectral statistics across the MBLT, starting with mapping to a Brownian motion process that analytically relates the spectral properties to the statistics of matrix elements. We demonstrate that the flow from Wigner-Dyson to Poisson statistics is a two-stage process. First, a fractal enhancement of matrix elements upon approaching the MBLT from the delocalized side produces an effective power-law interaction between energy levels, and leads to a plasma model for level statistics. At the second stage, the gas of eigenvalues has local interactions and the level statistics belongs to a semi-Poisson universality class. We verify our findings numerically on the XXZ spin chain. We provide a microscopic understanding of the level statistics across the MBLT and discuss implications for the transition that are strong constraints on possible theories."}],"month":"01","publication_status":"published","issue":"4","date_published":"2016-01-29T00:00:00Z","publisher":"American Physical Society","title":"Spectral statistics across the many-body localization transition","volume":93,"date_updated":"2021-01-12T08:22:26Z","quality_controlled":0,"extern":1,"citation":{"short":"M. Serbyn, J. Moore, Physical Review B - Condensed Matter and Materials Physics 93 (2016).","mla":"Serbyn, Maksym, and Joel Moore. “Spectral Statistics across the Many-Body Localization Transition.” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 93, no. 4, American Physical Society, 2016, doi:<a href=\"https://doi.org/10.1103/PhysRevB.93.041424\">10.1103/PhysRevB.93.041424</a>.","ieee":"M. Serbyn and J. Moore, “Spectral statistics across the many-body localization transition,” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 93, no. 4. American Physical Society, 2016.","ista":"Serbyn M, Moore J. 2016. Spectral statistics across the many-body localization transition. Physical Review B - Condensed Matter and Materials Physics. 93(4).","chicago":"Serbyn, Maksym, and Joel Moore. “Spectral Statistics across the Many-Body Localization Transition.” <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society, 2016. <a href=\"https://doi.org/10.1103/PhysRevB.93.041424\">https://doi.org/10.1103/PhysRevB.93.041424</a>.","ama":"Serbyn M, Moore J. Spectral statistics across the many-body localization transition. <i>Physical Review B - Condensed Matter and Materials Physics</i>. 2016;93(4). doi:<a href=\"https://doi.org/10.1103/PhysRevB.93.041424\">10.1103/PhysRevB.93.041424</a>","apa":"Serbyn, M., &#38; Moore, J. (2016). Spectral statistics across the many-body localization transition. <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.93.041424\">https://doi.org/10.1103/PhysRevB.93.041424</a>"},"author":[{"orcid":"0000-0002-2399-5827","last_name":"Serbyn","first_name":"Maksym","full_name":"Maksym Serbyn","id":"47809E7E-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Moore","first_name":"Joel","full_name":"Moore, Joel E"}]},{"related_material":{"record":[{"relation":"used_in_publication","id":"1077","status":"public"}]},"status":"public","day":"14","year":"2016","main_file_link":[{"open_access":"1","url":"https://doi.org/10.6084/m9.figshare.4315652.v1"}],"doi":"10.6084/m9.figshare.4315652.v1","date_created":"2021-08-10T08:29:47Z","oa":1,"type":"research_data_reference","_id":"9864","date_published":"2016-12-14T00:00:00Z","publisher":"The Royal Society","article_processing_charge":"No","title":"Data from evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family","abstract":[{"text":"Viral capsids are structurally constrained by interactions among the amino acids (AAs) of their constituent proteins. Therefore, epistasis is expected to evolve among physically interacting sites and to influence the rates of substitution. To study the evolution of epistasis, we focused on the major structural protein of the ϕX174 phage family by, first, reconstructing the ancestral protein sequences of 18 species using a Bayesian statistical framework. The inferred ancestral reconstruction differed at eight AAs, for a total of 256 possible ancestral haplotypes. For each ancestral haplotype and the extant species, we estimated, in silico, the distribution of free energies and epistasis of the capsid structure. We found that free energy has not significantly increased but epistasis has. We decomposed epistasis up to fifth order and found that higher-order epistasis sometimes compensates pairwise interactions making the free energy seem additive. The dN/dS ratio is low, suggesting strong purifying selection, and that structure is under stabilizing selection. We synthesized phages carrying ancestral haplotypes of the coat protein gene and measured their fitness experimentally. Our findings indicate that stabilizing mutations can have higher fitness, and that fitness optima do not necessarily coincide with energy minima.","lang":"eng"}],"month":"12","author":[{"id":"409D5C96-F248-11E8-B48F-1D18A9856A87","full_name":"Fernandes Redondo, Rodrigo A","first_name":"Rodrigo A","last_name":"Fernandes Redondo","orcid":"0000-0002-5837-2793"},{"full_name":"de Vladar, Harold","id":"2A181218-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5985-7653","first_name":"Harold","last_name":"de Vladar"},{"full_name":"Włodarski, Tomasz","last_name":"Włodarski","first_name":"Tomasz"},{"orcid":"0000-0002-4624-4612","first_name":"Jonathan P","last_name":"Bollback","full_name":"Bollback, Jonathan P","id":"2C6FA9CC-F248-11E8-B48F-1D18A9856A87"}],"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_updated":"2025-05-28T11:57:06Z","department":[{"_id":"NiBa"},{"_id":"JoBo"}],"oa_version":"Published Version","citation":{"ieee":"R. A. Fernandes Redondo, H. de Vladar, T. Włodarski, and J. P. Bollback, “Data from evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family.” The Royal Society, 2016.","apa":"Fernandes Redondo, R. A., de Vladar, H., Włodarski, T., &#38; Bollback, J. P. (2016). Data from evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family. The Royal Society. <a href=\"https://doi.org/10.6084/m9.figshare.4315652.v1\">https://doi.org/10.6084/m9.figshare.4315652.v1</a>","ista":"Fernandes Redondo RA, de Vladar H, Włodarski T, Bollback JP. 2016. Data from evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family, The Royal Society, <a href=\"https://doi.org/10.6084/m9.figshare.4315652.v1\">10.6084/m9.figshare.4315652.v1</a>.","ama":"Fernandes Redondo RA, de Vladar H, Włodarski T, Bollback JP. Data from evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family. 2016. doi:<a href=\"https://doi.org/10.6084/m9.figshare.4315652.v1\">10.6084/m9.figshare.4315652.v1</a>","chicago":"Fernandes Redondo, Rodrigo A, Harold de Vladar, Tomasz Włodarski, and Jonathan P Bollback. “Data from Evolutionary Interplay between Structure, Energy and Epistasis in the Coat Protein of the ΦX174 Phage Family.” The Royal Society, 2016. <a href=\"https://doi.org/10.6084/m9.figshare.4315652.v1\">https://doi.org/10.6084/m9.figshare.4315652.v1</a>.","short":"R.A. Fernandes Redondo, H. de Vladar, T. Włodarski, J.P. Bollback, (2016).","mla":"Fernandes Redondo, Rodrigo A., et al. <i>Data from Evolutionary Interplay between Structure, Energy and Epistasis in the Coat Protein of the ΦX174 Phage Family</i>. The Royal Society, 2016, doi:<a href=\"https://doi.org/10.6084/m9.figshare.4315652.v1\">10.6084/m9.figshare.4315652.v1</a>."}},{"year":"2016","doi":"10.1103/PhysRevB.94.155127","day":"17","status":"public","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1512.08523"}],"acknowledgement":"We thank S. Gazit for numerous discussions. This research was supported by the Gordon and Betty Moore Foundation EPiQS Initiative through Grant No. GBMF4307 (M.S.), the U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences under Grant No. DE-SC0014671 (R.T.S.), and a Simons Investigator grant (A.V.).","_id":"987","type":"journal_article","oa":1,"date_created":"2018-12-11T11:49:33Z","publication":"Physical Review B - Condensed Matter and Materials Physics","intvolume":"        94","publist_id":"6413","author":[{"full_name":"Dumitrescu, Philipp T","last_name":"Dumitrescu","first_name":"Philipp"},{"id":"47809E7E-F248-11E8-B48F-1D18A9856A87","full_name":"Maksym Serbyn","last_name":"Serbyn","first_name":"Maksym","orcid":"0000-0002-2399-5827"},{"last_name":"Scalettar","first_name":"Richard","full_name":"Scalettar, Richard T"},{"last_name":"Vishwanath","first_name":"Ashvin","full_name":"Vishwanath, Ashvin K"}],"citation":{"ieee":"P. Dumitrescu, M. Serbyn, R. Scalettar, and A. Vishwanath, “Superconductivity and nematic fluctuations in a model of doped FeSe monolayers: Determinant quantum Monte Carlo study,” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 94, no. 15. American Physical Society, 2016.","chicago":"Dumitrescu, Philipp, Maksym Serbyn, Richard Scalettar, and Ashvin Vishwanath. “Superconductivity and Nematic Fluctuations in a Model of Doped FeSe Monolayers: Determinant Quantum Monte Carlo Study.” <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society, 2016. <a href=\"https://doi.org/10.1103/PhysRevB.94.155127\">https://doi.org/10.1103/PhysRevB.94.155127</a>.","ista":"Dumitrescu P, Serbyn M, Scalettar R, Vishwanath A. 2016. Superconductivity and nematic fluctuations in a model of doped FeSe monolayers: Determinant quantum Monte Carlo study. Physical Review B - Condensed Matter and Materials Physics. 94(15).","ama":"Dumitrescu P, Serbyn M, Scalettar R, Vishwanath A. Superconductivity and nematic fluctuations in a model of doped FeSe monolayers: Determinant quantum Monte Carlo study. <i>Physical Review B - Condensed Matter and Materials Physics</i>. 2016;94(15). doi:<a href=\"https://doi.org/10.1103/PhysRevB.94.155127\">10.1103/PhysRevB.94.155127</a>","apa":"Dumitrescu, P., Serbyn, M., Scalettar, R., &#38; Vishwanath, A. (2016). Superconductivity and nematic fluctuations in a model of doped FeSe monolayers: Determinant quantum Monte Carlo study. <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.94.155127\">https://doi.org/10.1103/PhysRevB.94.155127</a>","mla":"Dumitrescu, Philipp, et al. “Superconductivity and Nematic Fluctuations in a Model of Doped FeSe Monolayers: Determinant Quantum Monte Carlo Study.” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 94, no. 15, American Physical Society, 2016, doi:<a href=\"https://doi.org/10.1103/PhysRevB.94.155127\">10.1103/PhysRevB.94.155127</a>.","short":"P. Dumitrescu, M. Serbyn, R. Scalettar, A. Vishwanath, Physical Review B - Condensed Matter and Materials Physics 94 (2016)."},"date_updated":"2021-01-12T08:22:27Z","extern":1,"quality_controlled":0,"title":"Superconductivity and nematic fluctuations in a model of doped FeSe monolayers: Determinant quantum Monte Carlo study","volume":94,"date_published":"2016-10-17T00:00:00Z","publisher":"American Physical Society","issue":"15","abstract":[{"lang":"eng","text":"In contrast to bulk FeSe, which exhibits nematic order and low temperature superconductivity, highly doped FeSe reverses the situation, having high temperature superconductivity appearing alongside a suppression of nematic order. To investigate this phenomenon, we study a minimal electronic model of FeSe, with interactions that enhance nematic fluctuations. This model is sign problem free, and is simulated using determinant quantum Monte Carlo (DQMC). We developed a DQMC algorithm with parallel tempering, which proves to be an efficient source of global updates and allows us to access the region of strong interactions. Over a wide range of intermediate couplings, we observe superconductivity with an extended s-wave order parameter, along with enhanced, but short-ranged, q=(0,0) ferro-orbital (nematic) order. These results are consistent with approximate weak-coupling treatments that predict that nematic fluctuations lead to superconducting pairing. Surprisingly, in the parameter range under study, we do not observe nematic long-range order. Instead, at stronger coupling an unusual insulating phase with q=(π,π) antiferro-orbital order appears, which is missed by weak-coupling approximations."}],"month":"10","publication_status":"published"},{"abstract":[{"text":"Cesium lead halide (CsPbX3, X = Cl, Br, I) nanocrystals (NCs) offer exceptional optical properties for several potential applications but their implementation is hindered by a low chemical and structural stability and limited processability. In the present work, we developed a new method to efficiently coat CsPbX3 NCs, which resulted in their increased chemical and optical stability as well as processability. The method is based on the incorporation of poly(maleic anhydride-alt-1-octadecene) (PMA) into the synthesis of the perovskite NCs. The presence of PMA in the ligand shell stabilizes the NCs by tightening the ligand binding, limiting in this way the NC surface interaction with the surrounding media. We further show that these NCs can be embedded in self-standing silicone/glass plates as down-conversion filters for the fabrication of monochromatic green and white light emitting diodes (LEDs) with narrow bandwidths and appealing color characteristics.","lang":"eng"}],"month":"07","publication_status":"published","issue":"30","language":[{"iso":"eng"}],"publisher":"American Chemical Society","date_published":"2016-07-25T00:00:00Z","volume":8,"title":"Polymer enhanced stability of inorganic perovskite nanocrystals and their application in color conversion LEDs","date_updated":"2021-01-12T07:44:58Z","extern":"1","citation":{"short":"M. Meyn, M. Perálvarez, A. Heuer Jungemann, W. Hertog, M. Ibáñez, R. Nafria, A. Genç, J. Arbiol, M. Kovalenko, J. Carreras, A. Cabot, A. Kanaras, ACS Applied Materials and Interfaces 8 (2016) 19579–19586.","mla":"Meyn, Michaela, et al. “Polymer Enhanced Stability of Inorganic Perovskite Nanocrystals and Their Application in Color Conversion LEDs.” <i>ACS Applied Materials and Interfaces</i>, vol. 8, no. 30, American Chemical Society, 2016, pp. 19579–86, doi:<a href=\"https://doi.org/10.1021/acsami.6b02529\">10.1021/acsami.6b02529</a>.","apa":"Meyn, M., Perálvarez, M., Heuer Jungemann, A., Hertog, W., Ibáñez, M., Nafria, R., … Kanaras, A. (2016). Polymer enhanced stability of inorganic perovskite nanocrystals and their application in color conversion LEDs. <i>ACS Applied Materials and Interfaces</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acsami.6b02529\">https://doi.org/10.1021/acsami.6b02529</a>","chicago":"Meyn, Michaela, Mariano Perálvarez, Amelie Heuer Jungemann, Wim Hertog, Maria Ibáñez, Raquel Nafria, Aziz Genç, et al. “Polymer Enhanced Stability of Inorganic Perovskite Nanocrystals and Their Application in Color Conversion LEDs.” <i>ACS Applied Materials and Interfaces</i>. American Chemical Society, 2016. <a href=\"https://doi.org/10.1021/acsami.6b02529\">https://doi.org/10.1021/acsami.6b02529</a>.","ista":"Meyn M, Perálvarez M, Heuer Jungemann A, Hertog W, Ibáñez M, Nafria R, Genç A, Arbiol J, Kovalenko M, Carreras J, Cabot A, Kanaras A. 2016. Polymer enhanced stability of inorganic perovskite nanocrystals and their application in color conversion LEDs. ACS Applied Materials and Interfaces. 8(30), 19579–19586.","ama":"Meyn M, Perálvarez M, Heuer Jungemann A, et al. Polymer enhanced stability of inorganic perovskite nanocrystals and their application in color conversion LEDs. <i>ACS Applied Materials and Interfaces</i>. 2016;8(30):19579-19586. doi:<a href=\"https://doi.org/10.1021/acsami.6b02529\">10.1021/acsami.6b02529</a>","ieee":"M. Meyn <i>et al.</i>, “Polymer enhanced stability of inorganic perovskite nanocrystals and their application in color conversion LEDs,” <i>ACS Applied Materials and Interfaces</i>, vol. 8, no. 30. American Chemical Society, pp. 19579–19586, 2016."},"oa_version":"None","author":[{"first_name":"Michaela","last_name":"Meyn","full_name":"Meyn, Michaela"},{"last_name":"Perálvarez","first_name":"Mariano","full_name":"Perálvarez, Mariano"},{"first_name":"Amelie","last_name":"Heuer Jungemann","full_name":"Heuer Jungemann, Amelie"},{"full_name":"Hertog, Wim","last_name":"Hertog","first_name":"Wim"},{"orcid":"0000-0001-5013-2843","first_name":"Maria","last_name":"Ibanez Sabate","full_name":"Ibanez Sabate, Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Nafria","first_name":"Raquel","full_name":"Nafria, Raquel"},{"last_name":"Genç","first_name":"Aziz","full_name":"Genç, Aziz"},{"full_name":"Arbiol, Jordi","last_name":"Arbiol","first_name":"Jordi"},{"full_name":"Kovalenko, Maksym","first_name":"Maksym","last_name":"Kovalenko"},{"last_name":"Carreras","first_name":"Josep","full_name":"Carreras, Josep"},{"first_name":"Andreu","last_name":"Cabot","full_name":"Cabot, Andreu"},{"full_name":"Kanaras, Antonios","last_name":"Kanaras","first_name":"Antonios"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":"         8","publist_id":"7460","publication":"ACS Applied Materials and Interfaces","date_created":"2018-12-11T11:46:03Z","oa":1,"_id":"366","type":"journal_article","acknowledgement":"This work was supported by the European Regional Development Funds, the Framework 7 program under project UNION (FP7-NMP-2012-310250) and HI-LED (FP7-ICT-2013-11- 619912), as well as the Spanish MINECO Projects BOOSTER (ENE2013-46624-C4-3-R) and AMALIE (TEC2012-38901- C02-01). M.M. thanks the Spanish MINECO for financial support through the Juan de la Cierva-formacion program. A.G. and J.A. acknowledge funding from Generalitat de Catalunya 2014 SGR 1638 and the Spanish MINECO MAT2014-51480- ERC (e-ATOM) and Severo Ochoa Excellence Program. We would like to thank Pablo Guardia for fruitful discussions.","doi":"10.1021/acsami.6b02529","main_file_link":[{"url":"https://eprints.soton.ac.uk/398581/","open_access":"1"}],"status":"public","page":"19579 - 19586","year":"2016","day":"25"},{"date_published":"2016-04-01T00:00:00Z","language":[{"iso":"eng"}],"publisher":"Nature Publishing Group","volume":12,"title":"Selective scattering between Floquet Bloch and Volkov states in a topological insulator","abstract":[{"text":"The coherent optical manipulation of solids is emerging as a promising way to engineer novel quantum states of matter. The strong time-periodic potential of intense laser light can be used to generate hybrid photon-electron states. Interaction of light with Bloch states leads to Floquet-Bloch states, which are essential in realizing new photo-induced quantum phases. Similarly, dressing of free-electron states near the surface of a solid generates Volkov states, which are used to study nonlinear optics in atoms and semiconductors. The interaction of these two dynamic states with each other remains an open experimental problem. Here we use time- and angle-resolved photoemission spectroscopy (Tr-ARPES) to selectively study the transition between these two states on the surface of the topological insulator Bi2Se3. We find that the coupling between the two strongly depends on the electron momentum, providing a route to enhance or inhibit it. Moreover, by controlling the light polarization we can negate Volkov states to generate pure Floquet-Bloch states. This work establishes a systematic path for the coherent manipulation of solids via light-matter interaction.","lang":"eng"}],"publication_status":"published","month":"04","issue":"4","author":[{"full_name":"Mahmood, Fahad","first_name":"Fahad","last_name":"Mahmood"},{"full_name":"Chan, Ching","first_name":"Ching","last_name":"Chan"},{"last_name":"Alpichshev","first_name":"Zhanybek","orcid":"0000-0002-7183-5203","id":"45E67A2A-F248-11E8-B48F-1D18A9856A87","full_name":"Alpichshev, Zhanybek"},{"full_name":"Gardner, Dillon","first_name":"Dillon","last_name":"Gardner"},{"first_name":"Young","last_name":"Lee","full_name":"Lee, Young"},{"full_name":"Lee, Patrick","first_name":"Patrick","last_name":"Lee"},{"full_name":"Gedik, Nuh","last_name":"Gedik","first_name":"Nuh"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2021-01-12T07:52:59Z","extern":"1","citation":{"short":"F. Mahmood, C. Chan, Z. Alpichshev, D. Gardner, Y. Lee, P. Lee, N. Gedik, Nature Physics 12 (2016) 306–310.","mla":"Mahmood, Fahad, et al. “Selective Scattering between Floquet Bloch and Volkov States in a Topological Insulator.” <i>Nature Physics</i>, vol. 12, no. 4, Nature Publishing Group, 2016, pp. 306–10, doi:<a href=\"https://doi.org/10.1038/nphys3609\">10.1038/nphys3609</a>.","ista":"Mahmood F, Chan C, Alpichshev Z, Gardner D, Lee Y, Lee P, Gedik N. 2016. Selective scattering between Floquet Bloch and Volkov states in a topological insulator. Nature Physics. 12(4), 306–310.","chicago":"Mahmood, Fahad, Ching Chan, Zhanybek Alpichshev, Dillon Gardner, Young Lee, Patrick Lee, and Nuh Gedik. “Selective Scattering between Floquet Bloch and Volkov States in a Topological Insulator.” <i>Nature Physics</i>. Nature Publishing Group, 2016. <a href=\"https://doi.org/10.1038/nphys3609\">https://doi.org/10.1038/nphys3609</a>.","ama":"Mahmood F, Chan C, Alpichshev Z, et al. Selective scattering between Floquet Bloch and Volkov states in a topological insulator. <i>Nature Physics</i>. 2016;12(4):306-310. doi:<a href=\"https://doi.org/10.1038/nphys3609\">10.1038/nphys3609</a>","apa":"Mahmood, F., Chan, C., Alpichshev, Z., Gardner, D., Lee, Y., Lee, P., &#38; Gedik, N. (2016). Selective scattering between Floquet Bloch and Volkov states in a topological insulator. <i>Nature Physics</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nphys3609\">https://doi.org/10.1038/nphys3609</a>","ieee":"F. Mahmood <i>et al.</i>, “Selective scattering between Floquet Bloch and Volkov states in a topological insulator,” <i>Nature Physics</i>, vol. 12, no. 4. Nature Publishing Group, pp. 306–310, 2016."},"oa_version":"None","intvolume":"        12","publist_id":"7440","publication":"Nature Physics","acknowledgement":"The authors would like to thank C. Lee for useful discussions. This work is supported by US Department of Energy (DOE), Basic Energy Sciences, Division of Materials Sciences and Engineering (experimental set-up, data acquisition and theory), Army Research Office (electron spectrometer) and by the Gordon and Betty Moore Foundation’s EPiQS Initiative through Grant GBMF4540 (data analysis).","page":"306 - 310","status":"public","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1512.05714"}],"doi":"10.1038/nphys3609","day":"01","year":"2016","date_created":"2018-12-11T11:46:11Z","oa":1,"type":"journal_article","_id":"389"},{"intvolume":"        27","publist_id":"7645","publication":"Forum Mathematicum","date_created":"2018-12-11T11:45:28Z","oa":1,"_id":"257","type":"journal_article","acknowledgement":"While working on this paper the first author was supported by ERC grant 306457 and the second author was supported by SwarnaJayanti Fellowship 2011–12, DST, Government of India.","status":"public","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1302.2434"}],"doi":"10.1515/forum-2013-6024","page":"2025 - 2050","day":"10","year":"2015","abstract":[{"text":"For suitable pairs of diagonal quadratic forms in eight variables we use the circle method to investigate the density of simultaneous integer solutions and relate this to the problem of estimating linear correlations among sums of two squares.","lang":"eng"}],"month":"07","publication_status":"published","issue":"4","date_published":"2015-07-10T00:00:00Z","publisher":"Walter de Gruyter GmbH","title":"Pairs of diagonal quadratic forms and linear correlations among sums of two squares","volume":27,"date_updated":"2021-01-12T06:58:18Z","quality_controlled":0,"extern":1,"citation":{"apa":"Browning, T. D., &#38; Munshi, R. (2015). Pairs of diagonal quadratic forms and linear correlations among sums of two squares. <i>Forum Mathematicum</i>. Walter de Gruyter GmbH. <a href=\"https://doi.org/10.1515/forum-2013-6024\">https://doi.org/10.1515/forum-2013-6024</a>","ama":"Browning TD, Munshi R. Pairs of diagonal quadratic forms and linear correlations among sums of two squares. <i>Forum Mathematicum</i>. 2015;27(4):2025-2050. doi:<a href=\"https://doi.org/10.1515/forum-2013-6024\">10.1515/forum-2013-6024</a>","chicago":"Browning, Timothy D, and Ritabrata Munshi. “Pairs of Diagonal Quadratic Forms and Linear Correlations among Sums of Two Squares.” <i>Forum Mathematicum</i>. Walter de Gruyter GmbH, 2015. <a href=\"https://doi.org/10.1515/forum-2013-6024\">https://doi.org/10.1515/forum-2013-6024</a>.","ista":"Browning TD, Munshi R. 2015. Pairs of diagonal quadratic forms and linear correlations among sums of two squares. Forum Mathematicum. 27(4), 2025–2050.","ieee":"T. D. Browning and R. Munshi, “Pairs of diagonal quadratic forms and linear correlations among sums of two squares,” <i>Forum Mathematicum</i>, vol. 27, no. 4. Walter de Gruyter GmbH, pp. 2025–2050, 2015.","short":"T.D. Browning, R. Munshi, Forum Mathematicum 27 (2015) 2025–2050.","mla":"Browning, Timothy D., and Ritabrata Munshi. “Pairs of Diagonal Quadratic Forms and Linear Correlations among Sums of Two Squares.” <i>Forum Mathematicum</i>, vol. 27, no. 4, Walter de Gruyter GmbH, 2015, pp. 2025–50, doi:<a href=\"https://doi.org/10.1515/forum-2013-6024\">10.1515/forum-2013-6024</a>."},"author":[{"last_name":"Browning","first_name":"Timothy D","orcid":"0000-0002-8314-0177","id":"35827D50-F248-11E8-B48F-1D18A9856A87","full_name":"Timothy Browning"},{"last_name":"Munshi","first_name":"Ritabrata","full_name":"Munshi, Ritabrata"}]},{"month":"02","issue":"731","language":[{"iso":"eng"}],"article_processing_charge":"No","volume":2017,"quality_controlled":"1","oa_version":"Preprint","author":[{"orcid":"0000-0002-8314-0177","last_name":"Browning","first_name":"Timothy D","full_name":"Browning, Timothy D","id":"35827D50-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Sean","last_name":"Prendiville","full_name":"Prendiville, Sean"}],"date_created":"2018-12-11T11:45:32Z","type":"journal_article","_id":"271","article_type":"original","publication_identifier":{"issn":["0075-4102"]},"main_file_link":[{"url":"https://arxiv.org/abs/1402.4489","open_access":"1"}],"status":"public","abstract":[{"lang":"eng","text":"We show that a non-singular integral form of degree d is soluble non-trivially over the integers if and only if it is soluble non-trivially over the reals and the p-adic numbers, provided that the form has at least (d-\\sqrt{d}/2)2^d variables. This improves on a longstanding result of Birch."}],"publication_status":"submitted","date_published":"2015-02-20T00:00:00Z","publisher":"Walter de Gruyter","title":"Improvements in Birch's theorem on forms in many variables","date_updated":"2024-03-05T12:09:22Z","extern":"1","citation":{"ieee":"T. D. Browning and S. Prendiville, “Improvements in Birch’s theorem on forms in many variables,” <i>Journal fur die Reine und Angewandte Mathematik</i>, vol. 2017, no. 731. Walter de Gruyter, pp. 203–234.","apa":"Browning, T. D., &#38; Prendiville, S. (n.d.). Improvements in Birch’s theorem on forms in many variables. <i>Journal Fur Die Reine Und Angewandte Mathematik</i>. Walter de Gruyter. <a href=\"https://doi.org/10.1515/crelle-2014-0122\">https://doi.org/10.1515/crelle-2014-0122</a>","ista":"Browning TD, Prendiville S. Improvements in Birch’s theorem on forms in many variables. Journal fur die Reine und Angewandte Mathematik. 2017(731), 203–234.","ama":"Browning TD, Prendiville S. Improvements in Birch’s theorem on forms in many variables. <i>Journal fur die Reine und Angewandte Mathematik</i>. 2017(731):203-234. doi:<a href=\"https://doi.org/10.1515/crelle-2014-0122\">10.1515/crelle-2014-0122</a>","chicago":"Browning, Timothy D, and Sean Prendiville. “Improvements in Birch’s Theorem on Forms in Many Variables.” <i>Journal Fur Die Reine Und Angewandte Mathematik</i>. Walter de Gruyter, n.d. <a href=\"https://doi.org/10.1515/crelle-2014-0122\">https://doi.org/10.1515/crelle-2014-0122</a>.","mla":"Browning, Timothy D., and Sean Prendiville. “Improvements in Birch’s Theorem on Forms in Many Variables.” <i>Journal Fur Die Reine Und Angewandte Mathematik</i>, vol. 2017, no. 731, Walter de Gruyter, pp. 203–34, doi:<a href=\"https://doi.org/10.1515/crelle-2014-0122\">10.1515/crelle-2014-0122</a>.","short":"T.D. Browning, S. Prendiville, Journal Fur Die Reine Und Angewandte Mathematik 2017 (n.d.) 203–234."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","external_id":{"arxiv":["1402.4489"]},"related_material":{"record":[{"relation":"later_version","id":"256","status":"public"}]},"intvolume":"      2017","arxiv":1,"publist_id":"7631","publication":"Journal fur die Reine und Angewandte Mathematik","oa":1,"acknowledgement":"While working on this paper the authors were supported by the Leverhulme Trust and ERC grant 306457.","year":"2015","day":"20","doi":"10.1515/crelle-2014-0122","page":"203 - 234"},{"publication_status":"published","abstract":[{"text":"The study of fluxoid states and fluxoid dynamics in mesoscopic iron-based superconducting rings is valuable for characterizing the basic properties of the superconductor, and may also provide important insight into the superconducting paring symmetry. We report the fabrications of micron-sized rings and disks from thin films of Fe(Se, Te) grown by molecular beam epitaxy. In order to study fluxoid states in rings we developed a custom-tailored version of magnetic force microscopy (MFM). This technique has a number of qualitative advantages for working with mesoscopic superconducting samples in comparison to the conventional MFM and other imaging techniques. We observed metastable fluxoid states in rings of different sizes. Thermally activated fluxoid dynamics of these states was studied and modeled. In addition, we found different regimes of interaction between Fe(Se, Te) ring and MFM tip which are explained. Possibilities of the existence of exotic vortex states and proposals for experiments to test the symmetry of the superconducting order parameter in iron based superconductors are analyzed.","lang":"eng"}],"title":"Study of Fe (Se, Te) micron-sized rings by magnetic force microscopy","publisher":"American Physical Society","date_published":"2015-03-01T00:00:00Z","citation":{"chicago":"Polshyn, Hryhoriy, Can Zhang, Tyler Naibert, James Eckstein, and Raffi Budakian. “Study of Fe (Se, Te) Micron-Sized Rings by Magnetic Force Microscopy.” In <i>APS March Meeting 2015</i>, Vol. 60. American Physical Society, 2015.","ama":"Polshyn H, Zhang C, Naibert T, Eckstein J, Budakian R. Study of Fe (Se, Te) micron-sized rings by magnetic force microscopy. In: <i>APS March Meeting 2015</i>. Vol 60. American Physical Society; 2015.","ista":"Polshyn H, Zhang C, Naibert T, Eckstein J, Budakian R. 2015. Study of Fe (Se, Te) micron-sized rings by magnetic force microscopy. APS March Meeting 2015. APS: American Physical Society, Bulletin of the American Physical Society, vol. 60, G16.00009.","apa":"Polshyn, H., Zhang, C., Naibert, T., Eckstein, J., &#38; Budakian, R. (2015). Study of Fe (Se, Te) micron-sized rings by magnetic force microscopy. In <i>APS March Meeting 2015</i> (Vol. 60). San Antonio, TX, United States: American Physical Society.","ieee":"H. Polshyn, C. Zhang, T. Naibert, J. Eckstein, and R. Budakian, “Study of Fe (Se, Te) micron-sized rings by magnetic force microscopy,” in <i>APS March Meeting 2015</i>, San Antonio, TX, United States, 2015, vol. 60, no. 1.","short":"H. Polshyn, C. Zhang, T. Naibert, J. Eckstein, R. Budakian, in:, APS March Meeting 2015, American Physical Society, 2015.","mla":"Polshyn, Hryhoriy, et al. “Study of Fe (Se, Te) Micron-Sized Rings by Magnetic Force Microscopy.” <i>APS March Meeting 2015</i>, vol. 60, no. 1, G16.00009, American Physical Society, 2015."},"extern":"1","date_updated":"2022-02-08T10:42:53Z","alternative_title":["Bulletin of the American Physical Society"],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","publication":"APS March Meeting 2015","intvolume":"        60","oa":1,"year":"2015","day":"01","article_number":"G16.00009","issue":"1","month":"03","volume":60,"article_processing_charge":"No","language":[{"iso":"eng"}],"oa_version":"Published Version","quality_controlled":"1","author":[{"orcid":"0000-0001-8223-8896","first_name":"Hryhoriy","last_name":"Polshyn","full_name":"Polshyn, Hryhoriy","id":"edfc7cb1-526e-11ec-b05a-e6ecc27e4e48"},{"last_name":"Zhang","first_name":"Can","full_name":"Zhang, Can"},{"full_name":"Naibert, Tyler","last_name":"Naibert","first_name":"Tyler"},{"last_name":"Eckstein","first_name":"James","full_name":"Eckstein, James"},{"full_name":"Budakian, Raffi","first_name":"Raffi","last_name":"Budakian"}],"conference":{"end_date":"2015-03-06","start_date":"2015-03-02","location":"San Antonio, TX, United States","name":"APS: American Physical Society"},"_id":"10748","type":"conference","date_created":"2022-02-08T10:17:09Z","status":"public","publication_identifier":{"issn":["0003-0503"]},"main_file_link":[{"url":"https://meetings.aps.org/Meeting/MAR15/Event/238442","open_access":"1"}]},{"department":[{"_id":"ToHe"},{"_id":"GaTk"}],"date_updated":"2022-02-25T11:59:23Z","citation":{"apa":"Parise, F., Lygeros, J., &#38; Ruess, J. (2015). Bayesian inference for stochastic individual-based models of ecological systems: a pest control simulation study. <i>Frontiers in Environmental Science</i>. Frontiers. <a href=\"https://doi.org/10.3389/fenvs.2015.00042\">https://doi.org/10.3389/fenvs.2015.00042</a>","ista":"Parise F, Lygeros J, Ruess J. 2015. Bayesian inference for stochastic individual-based models of ecological systems: a pest control simulation study. Frontiers in Environmental Science. 3, 42.","ama":"Parise F, Lygeros J, Ruess J. Bayesian inference for stochastic individual-based models of ecological systems: a pest control simulation study. <i>Frontiers in Environmental Science</i>. 2015;3. doi:<a href=\"https://doi.org/10.3389/fenvs.2015.00042\">10.3389/fenvs.2015.00042</a>","chicago":"Parise, Francesca, John Lygeros, and Jakob Ruess. “Bayesian Inference for Stochastic Individual-Based Models of Ecological Systems: A Pest Control Simulation Study.” <i>Frontiers in Environmental Science</i>. Frontiers, 2015. <a href=\"https://doi.org/10.3389/fenvs.2015.00042\">https://doi.org/10.3389/fenvs.2015.00042</a>.","ieee":"F. Parise, J. Lygeros, and J. Ruess, “Bayesian inference for stochastic individual-based models of ecological systems: a pest control simulation study,” <i>Frontiers in Environmental Science</i>, vol. 3. Frontiers, 2015.","mla":"Parise, Francesca, et al. “Bayesian Inference for Stochastic Individual-Based Models of Ecological Systems: A Pest Control Simulation Study.” <i>Frontiers in Environmental Science</i>, vol. 3, 42, Frontiers, 2015, doi:<a href=\"https://doi.org/10.3389/fenvs.2015.00042\">10.3389/fenvs.2015.00042</a>.","short":"F. Parise, J. Lygeros, J. Ruess, Frontiers in Environmental Science 3 (2015)."},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","abstract":[{"text":"Mathematical models are of fundamental importance in the understanding of complex population dynamics. For instance, they can be used to predict the population evolution starting from different initial conditions or to test how a system responds to external perturbations. For this analysis to be meaningful in real applications, however, it is of paramount importance to choose an appropriate model structure and to infer the model parameters from measured data. While many parameter inference methods are available for models based on deterministic ordinary differential equations, the same does not hold for more detailed individual-based models. Here we consider, in particular, stochastic models in which the time evolution of the species abundances is described by a continuous-time Markov chain. These models are governed by a master equation that is typically difficult to solve. Consequently, traditional inference methods that rely on iterative evaluation of parameter likelihoods are computationally intractable. The aim of this paper is to present recent advances in parameter inference for continuous-time Markov chain models, based on a moment closure approximation of the parameter likelihood, and to investigate how these results can help in understanding, and ultimately controlling, complex systems in ecology. Specifically, we illustrate through an agricultural pest case study how parameters of a stochastic individual-based model can be identified from measured data and how the resulting model can be used to solve an optimal control problem in a stochastic setting. In particular, we show how the matter of determining the optimal combination of two different pest control methods can be formulated as a chance constrained optimization problem where the control action is modeled as a state reset, leading to a hybrid system formulation.","lang":"eng"}],"ddc":["000","570"],"file_date_updated":"2022-02-25T11:55:26Z","date_published":"2015-06-10T00:00:00Z","publisher":"Frontiers","title":"Bayesian inference for stochastic individual-based models of ecological systems: a pest control simulation study","oa":1,"acknowledgement":"The authors would like to acknowledge contributions from Baptiste Mottet who performed preliminary analysis regarding parameter inference for the considered case study in a student project (Mottet, 2014/2015).\r\nThe research leading to these results has received funding from the People Programme (Marie Curie Actions) of the European Union's Seventh Framework Programme (FP7/2007-2013) under REA grant agreement No. [291734] and from SystemsX under the project SignalX.","year":"2015","doi":"10.3389/fenvs.2015.00042","day":"10","keyword":["General Environmental Science"],"scopus_import":"1","intvolume":"         3","publication":"Frontiers in Environmental Science","project":[{"name":"International IST Postdoc Fellowship Programme","grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7"}],"quality_controlled":"1","oa_version":"Published Version","author":[{"first_name":"Francesca","last_name":"Parise","full_name":"Parise, Francesca"},{"full_name":"Lygeros, John","last_name":"Lygeros","first_name":"John"},{"orcid":"0000-0003-1615-3282","first_name":"Jakob","last_name":"Ruess","full_name":"Ruess, Jakob","id":"4A245D00-F248-11E8-B48F-1D18A9856A87"}],"has_accepted_license":"1","month":"06","article_number":"42","file":[{"success":1,"relation":"main_file","access_level":"open_access","file_size":1371201,"file_id":"10795","checksum":"26c222487564e1be02a11d688d6f769d","creator":"dernst","date_created":"2022-02-25T11:55:26Z","date_updated":"2022-02-25T11:55:26Z","content_type":"application/pdf","file_name":"2015_FrontiersEnvironmScience_Parise.pdf"}],"language":[{"iso":"eng"}],"volume":3,"article_processing_charge":"No","date_created":"2022-02-25T11:42:25Z","article_type":"original","type":"journal_article","_id":"10794","status":"public","publication_identifier":{"issn":["2296-665X"]},"ec_funded":1},{"scopus_import":"1","keyword":["General Biochemistry","Genetics and Molecular Biology"],"publication":"Cell","intvolume":"       161","oa":1,"year":"2015","doi":"10.1016/j.cell.2015.06.005","page":"1502-1504","day":"18","abstract":[{"text":"Human cancer cells bear complex chromosome rearrangements that can be potential drivers of cancer development. However, the molecular mechanisms underlying these rearrangements have been unclear. Zhang et al. use a new technique combining live-cell imaging and single-cell sequencing to demonstrate that chromosomes mis-segregated to micronuclei frequently undergo chromothripsis-like rearrangements in the subsequent cell cycle.","lang":"eng"}],"publication_status":"published","title":"Linking micronuclei to chromosome fragmentation","date_published":"2015-06-18T00:00:00Z","publisher":"Elsevier","pmid":1,"citation":{"short":"E.M. Hatch, M. Hetzer, Cell 161 (2015) 1502–1504.","mla":"Hatch, Emily M., and Martin Hetzer. “Linking Micronuclei to Chromosome Fragmentation.” <i>Cell</i>, vol. 161, no. 7, Elsevier, 2015, pp. 1502–04, doi:<a href=\"https://doi.org/10.1016/j.cell.2015.06.005\">10.1016/j.cell.2015.06.005</a>.","ama":"Hatch EM, Hetzer M. Linking micronuclei to chromosome fragmentation. <i>Cell</i>. 2015;161(7):1502-1504. doi:<a href=\"https://doi.org/10.1016/j.cell.2015.06.005\">10.1016/j.cell.2015.06.005</a>","ista":"Hatch EM, Hetzer M. 2015. Linking micronuclei to chromosome fragmentation. Cell. 161(7), 1502–1504.","chicago":"Hatch, Emily M., and Martin Hetzer. “Linking Micronuclei to Chromosome Fragmentation.” <i>Cell</i>. Elsevier, 2015. <a href=\"https://doi.org/10.1016/j.cell.2015.06.005\">https://doi.org/10.1016/j.cell.2015.06.005</a>.","apa":"Hatch, E. M., &#38; Hetzer, M. (2015). Linking micronuclei to chromosome fragmentation. <i>Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cell.2015.06.005\">https://doi.org/10.1016/j.cell.2015.06.005</a>","ieee":"E. M. Hatch and M. Hetzer, “Linking micronuclei to chromosome fragmentation,” <i>Cell</i>, vol. 161, no. 7. Elsevier, pp. 1502–1504, 2015."},"date_updated":"2022-07-18T08:34:33Z","extern":"1","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","external_id":{"pmid":["26091034"]},"type":"journal_article","_id":"11073","article_type":"original","date_created":"2022-04-07T07:48:49Z","publication_identifier":{"issn":["0092-8674"]},"status":"public","main_file_link":[{"url":"https://doi.org/10.1016/j.cell.2015.06.005","open_access":"1"}],"issue":"7","month":"06","article_processing_charge":"No","volume":161,"language":[{"iso":"eng"}],"oa_version":"Published Version","quality_controlled":"1","author":[{"last_name":"Hatch","first_name":"Emily M.","full_name":"Hatch, Emily M."},{"id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","full_name":"HETZER, Martin W","first_name":"Martin W","last_name":"HETZER","orcid":"0000-0002-2111-992X"}]},{"citation":{"mla":"Hatch, Emily M., and Martin Hetzer. “Chromothripsis.” <i>Current Biology</i>, vol. 25, no. 10, Elsevier, 2015, pp. PR397-R399, doi:<a href=\"https://doi.org/10.1016/j.cub.2015.02.033\">10.1016/j.cub.2015.02.033</a>.","short":"E.M. Hatch, M. Hetzer, Current Biology 25 (2015) PR397-R399.","ieee":"E. M. Hatch and M. Hetzer, “Chromothripsis,” <i>Current Biology</i>, vol. 25, no. 10. Elsevier, pp. PR397-R399, 2015.","chicago":"Hatch, Emily M., and Martin Hetzer. “Chromothripsis.” <i>Current Biology</i>. Elsevier, 2015. <a href=\"https://doi.org/10.1016/j.cub.2015.02.033\">https://doi.org/10.1016/j.cub.2015.02.033</a>.","ista":"Hatch EM, Hetzer M. 2015. Chromothripsis. Current Biology. 25(10), PR397-R399.","ama":"Hatch EM, Hetzer M. Chromothripsis. <i>Current Biology</i>. 2015;25(10):PR397-R399. doi:<a href=\"https://doi.org/10.1016/j.cub.2015.02.033\">10.1016/j.cub.2015.02.033</a>","apa":"Hatch, E. M., &#38; Hetzer, M. (2015). Chromothripsis. <i>Current Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cub.2015.02.033\">https://doi.org/10.1016/j.cub.2015.02.033</a>"},"date_updated":"2022-07-18T08:34:34Z","extern":"1","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","external_id":{"pmid":["25989073"]},"publication_status":"published","title":"Chromothripsis","publisher":"Elsevier","date_published":"2015-05-18T00:00:00Z","pmid":1,"oa":1,"year":"2015","page":"PR397-R399","doi":"10.1016/j.cub.2015.02.033","day":"18","keyword":["General Agricultural and Biological Sciences","General Biochemistry","Genetics and Molecular Biology"],"scopus_import":"1","publication":"Current Biology","intvolume":"        25","oa_version":"Published Version","quality_controlled":"1","author":[{"first_name":"Emily M.","last_name":"Hatch","full_name":"Hatch, Emily M."},{"first_name":"Martin W","last_name":"HETZER","orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","full_name":"HETZER, Martin W"}],"issue":"10","month":"05","article_processing_charge":"No","volume":25,"language":[{"iso":"eng"}],"_id":"11074","type":"journal_article","article_type":"original","date_created":"2022-04-07T07:49:00Z","publication_identifier":{"issn":["0960-9822"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.cub.2015.02.033"}],"status":"public"},{"oa":1,"day":"01","doi":"10.1101/gad.256495.114","page":"337-349","year":"2015","keyword":["Developmental Biology","Genetics"],"scopus_import":"1","intvolume":"        29","publication":"Genes & Development","extern":"1","date_updated":"2022-07-18T08:43:20Z","citation":{"apa":"Ibarra, A., &#38; Hetzer, M. (2015). Nuclear pore proteins and the control of genome functions. <i>Genes &#38; Development</i>. Cold Spring Harbor Laboratory. <a href=\"https://doi.org/10.1101/gad.256495.114\">https://doi.org/10.1101/gad.256495.114</a>","chicago":"Ibarra, Arkaitz, and Martin Hetzer. “Nuclear Pore Proteins and the Control of Genome Functions.” <i>Genes &#38; Development</i>. Cold Spring Harbor Laboratory, 2015. <a href=\"https://doi.org/10.1101/gad.256495.114\">https://doi.org/10.1101/gad.256495.114</a>.","ama":"Ibarra A, Hetzer M. Nuclear pore proteins and the control of genome functions. <i>Genes &#38; Development</i>. 2015;29(4):337-349. doi:<a href=\"https://doi.org/10.1101/gad.256495.114\">10.1101/gad.256495.114</a>","ista":"Ibarra A, Hetzer M. 2015. Nuclear pore proteins and the control of genome functions. Genes &#38; Development. 29(4), 337–349.","ieee":"A. Ibarra and M. Hetzer, “Nuclear pore proteins and the control of genome functions,” <i>Genes &#38; Development</i>, vol. 29, no. 4. Cold Spring Harbor Laboratory, pp. 337–349, 2015.","mla":"Ibarra, Arkaitz, and Martin Hetzer. “Nuclear Pore Proteins and the Control of Genome Functions.” <i>Genes &#38; Development</i>, vol. 29, no. 4, Cold Spring Harbor Laboratory, 2015, pp. 337–49, doi:<a href=\"https://doi.org/10.1101/gad.256495.114\">10.1101/gad.256495.114</a>.","short":"A. Ibarra, M. Hetzer, Genes &#38; Development 29 (2015) 337–349."},"external_id":{"pmid":["25691464"]},"user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","publication_status":"published","abstract":[{"lang":"eng","text":"Nuclear pore complexes (NPCs) are composed of several copies of ∼30 different proteins called nucleoporins (Nups). NPCs penetrate the nuclear envelope (NE) and regulate the nucleocytoplasmic trafficking of macromolecules. Beyond this vital role, NPC components influence genome functions in a transport-independent manner. Nups play an evolutionarily conserved role in gene expression regulation that, in metazoans, extends into the nuclear interior. Additionally, in proliferative cells, Nups play a crucial role in genome integrity maintenance and mitotic progression. Here we discuss genome-related functions of Nups and their impact on essential DNA metabolism processes such as transcription, chromosome duplication, and segregation."}],"pmid":1,"date_published":"2015-02-01T00:00:00Z","publisher":"Cold Spring Harbor Laboratory","title":"Nuclear pore proteins and the control of genome functions","date_created":"2022-04-07T07:49:21Z","article_type":"original","_id":"11076","type":"journal_article","publication_identifier":{"eissn":["1549-5477"],"issn":["0890-9369"]},"main_file_link":[{"url":"https://doi.org/10.1101/gad.256495.114","open_access":"1"}],"status":"public","quality_controlled":"1","oa_version":"Published Version","author":[{"last_name":"Ibarra","first_name":"Arkaitz","full_name":"Ibarra, Arkaitz"},{"full_name":"HETZER, Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","last_name":"HETZER","first_name":"Martin W"}],"month":"02","issue":"4","language":[{"iso":"eng"}],"volume":29,"article_processing_charge":"No"},{"abstract":[{"lang":"eng","text":"Nucleoporins (Nups) are a family of proteins best known as the constituent building blocks of nuclear pore complexes (NPCs), membrane-embedded channels that mediate nuclear transport across the nuclear envelope. Recent evidence suggests that several Nups have additional roles in controlling the activation and silencing of developmental genes; however, the mechanistic details of these functions remain poorly understood. Here, we show that depletion of Nup153 in mouse embryonic stem cells (mESCs) causes the derepression of developmental genes and induction of early differentiation. This loss of stem cell identity is not associated with defects in the nuclear import of key pluripotency factors. Rather, Nup153 binds around the transcriptional start site (TSS) of developmental genes and mediates the recruitment of the polycomb-repressive complex 1 (PRC1) to a subset of its target loci. Our results demonstrate a chromatin-associated role of Nup153 in maintaining stem cell pluripotency by functioning in mammalian epigenetic gene silencing."}],"publication_status":"published","publisher":"Cold Spring Harbor Laboratory","date_published":"2015-06-16T00:00:00Z","pmid":1,"title":"The nucleoporin Nup153 regulates embryonic stem cell pluripotency through gene silencing","date_updated":"2022-07-18T08:43:51Z","extern":"1","citation":{"short":"F.V. Jacinto, C. Benner, M. Hetzer, Genes &#38; Development 29 (2015) 1224–1238.","mla":"Jacinto, Filipe V., et al. “The Nucleoporin Nup153 Regulates Embryonic Stem Cell Pluripotency through Gene Silencing.” <i>Genes &#38; Development</i>, vol. 29, no. 12, Cold Spring Harbor Laboratory, 2015, pp. 1224–38, doi:<a href=\"https://doi.org/10.1101/gad.260919.115\">10.1101/gad.260919.115</a>.","ieee":"F. V. Jacinto, C. Benner, and M. Hetzer, “The nucleoporin Nup153 regulates embryonic stem cell pluripotency through gene silencing,” <i>Genes &#38; Development</i>, vol. 29, no. 12. Cold Spring Harbor Laboratory, pp. 1224–1238, 2015.","ama":"Jacinto FV, Benner C, Hetzer M. The nucleoporin Nup153 regulates embryonic stem cell pluripotency through gene silencing. <i>Genes &#38; Development</i>. 2015;29(12):1224-1238. doi:<a href=\"https://doi.org/10.1101/gad.260919.115\">10.1101/gad.260919.115</a>","chicago":"Jacinto, Filipe V., Chris Benner, and Martin Hetzer. “The Nucleoporin Nup153 Regulates Embryonic Stem Cell Pluripotency through Gene Silencing.” <i>Genes &#38; Development</i>. Cold Spring Harbor Laboratory, 2015. <a href=\"https://doi.org/10.1101/gad.260919.115\">https://doi.org/10.1101/gad.260919.115</a>.","ista":"Jacinto FV, Benner C, Hetzer M. 2015. The nucleoporin Nup153 regulates embryonic stem cell pluripotency through gene silencing. Genes &#38; Development. 29(12), 1224–1238.","apa":"Jacinto, F. V., Benner, C., &#38; Hetzer, M. (2015). The nucleoporin Nup153 regulates embryonic stem cell pluripotency through gene silencing. <i>Genes &#38; Development</i>. Cold Spring Harbor Laboratory. <a href=\"https://doi.org/10.1101/gad.260919.115\">https://doi.org/10.1101/gad.260919.115</a>"},"user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","external_id":{"pmid":["26080816"]},"keyword":["Developmental Biology","Genetics"],"scopus_import":"1","intvolume":"        29","publication":"Genes & Development","oa":1,"page":"1224-1238","day":"16","doi":"10.1101/gad.260919.115","year":"2015","month":"06","issue":"12","language":[{"iso":"eng"}],"article_processing_charge":"No","volume":29,"quality_controlled":"1","oa_version":"Published Version","author":[{"full_name":"Jacinto, Filipe V.","first_name":"Filipe V.","last_name":"Jacinto"},{"first_name":"Chris","last_name":"Benner","full_name":"Benner, Chris"},{"full_name":"HETZER, Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","first_name":"Martin W","last_name":"HETZER"}],"date_created":"2022-04-07T07:49:31Z","_id":"11077","type":"journal_article","article_type":"original","publication_identifier":{"issn":["0890-9369"],"eissn":["1549-5477"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/gad.260919.115"}],"status":"public"},{"title":"Integrated transcriptome and proteome analyses reveal organ-specific proteome deterioration in old rats","publisher":"Elsevier","date_published":"2015-09-23T00:00:00Z","pmid":1,"abstract":[{"text":"Aging is associated with the decline of protein, cell, and organ function. Here, we use an integrated approach to characterize gene expression, bulk translation, and cell biology in the brains and livers of young and old rats. We identify 468 differences in protein abundance between young and old animals. The majority are a consequence of altered translation output, that is, the combined effect of changes in transcript abundance and translation efficiency. In addition, we identify 130 proteins whose overall abundance remains unchanged but whose sub-cellular localization, phosphorylation state, or splice-form varies. While some protein-level differences appear to be a generic property of the rats’ chronological age, the majority are specific to one organ. These may be a consequence of the organ’s physiology or the chronological age of the cells within the tissue. Taken together, our study provides an initial view of the proteome at the molecular, sub-cellular, and organ level in young and old rats.","lang":"eng"}],"publication_status":"published","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","external_id":{"pmid":["27135913"]},"citation":{"ama":"Ori A, Toyama BH, Harris MS, et al. Integrated transcriptome and proteome analyses reveal organ-specific proteome deterioration in old rats. <i>Cell Systems</i>. 2015;1(3):P224-237. doi:<a href=\"https://doi.org/10.1016/j.cels.2015.08.012\">10.1016/j.cels.2015.08.012</a>","chicago":"Ori, Alessandro, Brandon H. Toyama, Michael S. Harris, Thomas Bock, Murat Iskar, Peer Bork, Nicholas T. Ingolia, Martin Hetzer, and Martin Beck. “Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats.” <i>Cell Systems</i>. Elsevier, 2015. <a href=\"https://doi.org/10.1016/j.cels.2015.08.012\">https://doi.org/10.1016/j.cels.2015.08.012</a>.","ista":"Ori A, Toyama BH, Harris MS, Bock T, Iskar M, Bork P, Ingolia NT, Hetzer M, Beck M. 2015. Integrated transcriptome and proteome analyses reveal organ-specific proteome deterioration in old rats. Cell Systems. 1(3), P224-237.","apa":"Ori, A., Toyama, B. H., Harris, M. S., Bock, T., Iskar, M., Bork, P., … Beck, M. (2015). Integrated transcriptome and proteome analyses reveal organ-specific proteome deterioration in old rats. <i>Cell Systems</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cels.2015.08.012\">https://doi.org/10.1016/j.cels.2015.08.012</a>","ieee":"A. Ori <i>et al.</i>, “Integrated transcriptome and proteome analyses reveal organ-specific proteome deterioration in old rats,” <i>Cell Systems</i>, vol. 1, no. 3. Elsevier, pp. P224-237, 2015.","mla":"Ori, Alessandro, et al. “Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats.” <i>Cell Systems</i>, vol. 1, no. 3, Elsevier, 2015, pp. P224-237, doi:<a href=\"https://doi.org/10.1016/j.cels.2015.08.012\">10.1016/j.cels.2015.08.012</a>.","short":"A. Ori, B.H. Toyama, M.S. Harris, T. Bock, M. Iskar, P. Bork, N.T. Ingolia, M. Hetzer, M. Beck, Cell Systems 1 (2015) P224-237."},"date_updated":"2022-07-18T08:44:07Z","extern":"1","publication":"Cell Systems","intvolume":"         1","scopus_import":"1","keyword":["Cell Biology","Histology","Pathology and Forensic Medicine"],"year":"2015","page":"P224-237","doi":"10.1016/j.cels.2015.08.012","day":"23","oa":1,"article_processing_charge":"No","volume":1,"language":[{"iso":"eng"}],"issue":"3","month":"09","author":[{"last_name":"Ori","first_name":"Alessandro","full_name":"Ori, Alessandro"},{"first_name":"Brandon H.","last_name":"Toyama","full_name":"Toyama, Brandon H."},{"last_name":"Harris","first_name":"Michael S.","full_name":"Harris, Michael S."},{"full_name":"Bock, Thomas","first_name":"Thomas","last_name":"Bock"},{"full_name":"Iskar, Murat","first_name":"Murat","last_name":"Iskar"},{"full_name":"Bork, Peer","first_name":"Peer","last_name":"Bork"},{"last_name":"Ingolia","first_name":"Nicholas T.","full_name":"Ingolia, Nicholas T."},{"id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","full_name":"HETZER, Martin W","first_name":"Martin W","last_name":"HETZER","orcid":"0000-0002-2111-992X"},{"full_name":"Beck, Martin","last_name":"Beck","first_name":"Martin"}],"oa_version":"Published Version","quality_controlled":"1","status":"public","publication_identifier":{"issn":["2405-4712"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.cels.2015.08.012"}],"_id":"11078","type":"journal_article","article_type":"original","date_created":"2022-04-07T07:49:39Z"}]