[{"language":[{"iso":"eng"}],"article_processing_charge":"No","volume":"Part F129314","month":"07","author":[{"first_name":"Dan-Adrian","last_name":"Alistarh","orcid":"0000-0003-3650-940X","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","full_name":"Alistarh, Dan-Adrian"},{"last_name":"Kopinsky","first_name":"Justin","full_name":"Kopinsky, Justin"},{"full_name":"Li, Jerry","first_name":"Jerry","last_name":"Li"},{"first_name":"Giorgi","last_name":"Nadiradze","orcid":"0000-0001-5634-0731","id":"3279A00C-F248-11E8-B48F-1D18A9856A87","full_name":"Nadiradze, Giorgi"}],"quality_controlled":"1","oa_version":"Submitted Version","conference":{"end_date":"2017-07-27","start_date":"2017-07-25","location":"Washington, WA, USA","name":"PODC: Principles of Distributed Computing"},"status":"public","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1706.04178"}],"publication_identifier":{"isbn":["978-145034992-5"]},"date_created":"2018-12-11T11:48:31Z","_id":"791","type":"conference","date_published":"2017-07-26T00:00:00Z","publisher":"ACM","title":"The power of choice in priority scheduling","abstract":[{"lang":"eng","text":"Consider the following random process: we are given n queues, into which elements of increasing labels are inserted uniformly at random. To remove an element, we pick two queues at random, and remove the element of lower label (higher priority) among the two. The cost of a removal is the rank of the label removed, among labels still present in any of the queues, that is, the distance from the optimal choice at each step. Variants of this strategy are prevalent in state-of-the-art concurrent priority queue implementations. Nonetheless, it is not known whether such implementations provide any rank guarantees, even in a sequential model. We answer this question, showing that this strategy provides surprisingly strong guarantees: Although the single-choice process, where we always insert and remove from a single randomly chosen queue, has degrading cost, going to infinity as we increase the number of steps, in the two choice process, the expected rank of a removed element is O(n) while the expected worst-case cost is O(n log n). These bounds are tight, and hold irrespective of the number of steps for which we run the process. The argument is based on a new technical connection between &quot;heavily loaded&quot; balls-into-bins processes and priority scheduling. Our analytic results inspire a new concurrent priority queue implementation, which improves upon the state of the art in terms of practical performance."}],"publication_status":"published","isi":1,"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","external_id":{"isi":["000462995000035"]},"date_updated":"2023-09-27T12:17:59Z","department":[{"_id":"DaAl"}],"citation":{"ieee":"D.-A. Alistarh, J. Kopinsky, J. Li, and G. Nadiradze, “The power of choice in priority scheduling,” in <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, Washington, WA, USA, 2017, vol. Part F129314, pp. 283–292.","apa":"Alistarh, D.-A., Kopinsky, J., Li, J., &#38; Nadiradze, G. (2017). The power of choice in priority scheduling. In <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i> (Vol. Part F129314, pp. 283–292). Washington, WA, USA: ACM. <a href=\"https://doi.org/10.1145/3087801.3087810\">https://doi.org/10.1145/3087801.3087810</a>","chicago":"Alistarh, Dan-Adrian, Justin Kopinsky, Jerry Li, and Giorgi Nadiradze. “The Power of Choice in Priority Scheduling.” In <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, Part F129314:283–92. ACM, 2017. <a href=\"https://doi.org/10.1145/3087801.3087810\">https://doi.org/10.1145/3087801.3087810</a>.","ista":"Alistarh D-A, Kopinsky J, Li J, Nadiradze G. 2017. The power of choice in priority scheduling. Proceedings of the ACM Symposium on Principles of Distributed Computing. PODC: Principles of Distributed Computing vol. Part F129314, 283–292.","ama":"Alistarh D-A, Kopinsky J, Li J, Nadiradze G. The power of choice in priority scheduling. In: <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>. Vol Part F129314. ACM; 2017:283-292. doi:<a href=\"https://doi.org/10.1145/3087801.3087810\">10.1145/3087801.3087810</a>","mla":"Alistarh, Dan-Adrian, et al. “The Power of Choice in Priority Scheduling.” <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, vol. Part F129314, ACM, 2017, pp. 283–92, doi:<a href=\"https://doi.org/10.1145/3087801.3087810\">10.1145/3087801.3087810</a>.","short":"D.-A. Alistarh, J. Kopinsky, J. Li, G. Nadiradze, in:, Proceedings of the ACM Symposium on Principles of Distributed Computing, ACM, 2017, pp. 283–292."},"publist_id":"6864","publication":"Proceedings of the ACM Symposium on Principles of Distributed Computing","scopus_import":"1","doi":"10.1145/3087801.3087810","day":"26","year":"2017","page":"283 - 292","oa":1},{"scopus_import":"1","publication":"Journal of Fluid Mechanics","publist_id":"6862","intvolume":"       833","oa":1,"day":"25","doi":"10.1017/jfm.2017.699","page":"274 - 301","year":"2017","isi":1,"publication_status":"published","abstract":[{"lang":"eng","text":"The chaotic dynamics of low-dimensional systems, such as Lorenz or Rössler flows, is guided by the infinity of periodic orbits embedded in their strange attractors. Whether this is also the case for the infinite-dimensional dynamics of Navier–Stokes equations has long been speculated, and is a topic of ongoing study. Periodic and relative periodic solutions have been shown to be involved in transitions to turbulence. Their relevance to turbulent dynamics – specifically, whether periodic orbits play the same role in high-dimensional nonlinear systems like the Navier–Stokes equations as they do in lower-dimensional systems – is the focus of the present investigation. We perform here a detailed study of pipe flow relative periodic orbits with energies and mean dissipations close to turbulent values. We outline several approaches to reduction of the translational symmetry of the system. We study pipe flow in a minimal computational cell at   Re=2500, and report a library of invariant solutions found with the aid of the method of slices. Detailed study of the unstable manifolds of a sample of these solutions is consistent with the picture that relative periodic orbits are embedded in the chaotic saddle and that they guide the turbulent dynamics."}],"title":"Relative periodic orbits form the backbone of turbulent pipe flow","publisher":"Cambridge University Press","date_published":"2017-12-25T00:00:00Z","citation":{"ieee":"N. B. Budanur, K. Short, M. Farazmand, A. Willis, and P. Cvitanović, “Relative periodic orbits form the backbone of turbulent pipe flow,” <i>Journal of Fluid Mechanics</i>, vol. 833. Cambridge University Press, pp. 274–301, 2017.","ista":"Budanur NB, Short K, Farazmand M, Willis A, Cvitanović P. 2017. Relative periodic orbits form the backbone of turbulent pipe flow. Journal of Fluid Mechanics. 833, 274–301.","chicago":"Budanur, Nazmi B, Kimberly Short, Mohammad Farazmand, Ashley Willis, and Predrag Cvitanović. “Relative Periodic Orbits Form the Backbone of Turbulent Pipe Flow.” <i>Journal of Fluid Mechanics</i>. Cambridge University Press, 2017. <a href=\"https://doi.org/10.1017/jfm.2017.699\">https://doi.org/10.1017/jfm.2017.699</a>.","ama":"Budanur NB, Short K, Farazmand M, Willis A, Cvitanović P. Relative periodic orbits form the backbone of turbulent pipe flow. <i>Journal of Fluid Mechanics</i>. 2017;833:274-301. doi:<a href=\"https://doi.org/10.1017/jfm.2017.699\">10.1017/jfm.2017.699</a>","apa":"Budanur, N. B., Short, K., Farazmand, M., Willis, A., &#38; Cvitanović, P. (2017). Relative periodic orbits form the backbone of turbulent pipe flow. <i>Journal of Fluid Mechanics</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/jfm.2017.699\">https://doi.org/10.1017/jfm.2017.699</a>","short":"N.B. Budanur, K. Short, M. Farazmand, A. Willis, P. Cvitanović, Journal of Fluid Mechanics 833 (2017) 274–301.","mla":"Budanur, Nazmi B., et al. “Relative Periodic Orbits Form the Backbone of Turbulent Pipe Flow.” <i>Journal of Fluid Mechanics</i>, vol. 833, Cambridge University Press, 2017, pp. 274–301, doi:<a href=\"https://doi.org/10.1017/jfm.2017.699\">10.1017/jfm.2017.699</a>."},"department":[{"_id":"BjHo"}],"date_updated":"2023-09-27T12:17:35Z","external_id":{"isi":["000414641700001"]},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","_id":"792","type":"journal_article","date_created":"2018-12-11T11:48:32Z","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1705.03720"}],"publication_identifier":{"issn":["00221120"]},"status":"public","month":"12","volume":833,"article_processing_charge":"No","language":[{"iso":"eng"}],"oa_version":"Submitted Version","project":[{"_id":"25636330-B435-11E9-9278-68D0E5697425","grant_number":"11-NSF-1070","name":"ROOTS Genome-wide Analysis of Root Traits"}],"quality_controlled":"1","author":[{"id":"3EA1010E-F248-11E8-B48F-1D18A9856A87","full_name":"Budanur, Nazmi B","first_name":"Nazmi B","last_name":"Budanur","orcid":"0000-0003-0423-5010"},{"full_name":"Short, Kimberly","first_name":"Kimberly","last_name":"Short"},{"full_name":"Farazmand, Mohammad","last_name":"Farazmand","first_name":"Mohammad"},{"full_name":"Willis, Ashley","first_name":"Ashley","last_name":"Willis"},{"full_name":"Cvitanović, Predrag","first_name":"Predrag","last_name":"Cvitanović"}]},{"day":"01","page":"28 - 31","doi":"10.1016/j.comgeo.2017.07.002","year":"2017","oa":1,"publication":"Computational Geometry: Theory and Applications","intvolume":"        66","publist_id":"6861","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","external_id":{"isi":["000412039700003"]},"citation":{"mla":"Fulek, Radoslav, et al. “On the Existence of Ordinary Triangles.” <i>Computational Geometry: Theory and Applications</i>, vol. 66, Elsevier, 2017, pp. 28–31, doi:<a href=\"https://doi.org/10.1016/j.comgeo.2017.07.002\">10.1016/j.comgeo.2017.07.002</a>.","short":"R. Fulek, H. Mojarrad, M. Naszódi, J. Solymosi, S. Stich, M. Szedlák, Computational Geometry: Theory and Applications 66 (2017) 28–31.","ieee":"R. Fulek, H. Mojarrad, M. Naszódi, J. Solymosi, S. Stich, and M. Szedlák, “On the existence of ordinary triangles,” <i>Computational Geometry: Theory and Applications</i>, vol. 66. Elsevier, pp. 28–31, 2017.","apa":"Fulek, R., Mojarrad, H., Naszódi, M., Solymosi, J., Stich, S., &#38; Szedlák, M. (2017). On the existence of ordinary triangles. <i>Computational Geometry: Theory and Applications</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.comgeo.2017.07.002\">https://doi.org/10.1016/j.comgeo.2017.07.002</a>","chicago":"Fulek, Radoslav, Hossein Mojarrad, Márton Naszódi, József Solymosi, Sebastian Stich, and May Szedlák. “On the Existence of Ordinary Triangles.” <i>Computational Geometry: Theory and Applications</i>. Elsevier, 2017. <a href=\"https://doi.org/10.1016/j.comgeo.2017.07.002\">https://doi.org/10.1016/j.comgeo.2017.07.002</a>.","ista":"Fulek R, Mojarrad H, Naszódi M, Solymosi J, Stich S, Szedlák M. 2017. On the existence of ordinary triangles. Computational Geometry: Theory and Applications. 66, 28–31.","ama":"Fulek R, Mojarrad H, Naszódi M, Solymosi J, Stich S, Szedlák M. On the existence of ordinary triangles. <i>Computational Geometry: Theory and Applications</i>. 2017;66:28-31. doi:<a href=\"https://doi.org/10.1016/j.comgeo.2017.07.002\">10.1016/j.comgeo.2017.07.002</a>"},"date_updated":"2023-09-27T12:15:16Z","department":[{"_id":"UlWa"}],"title":"On the existence of ordinary triangles","publisher":"Elsevier","date_published":"2017-01-01T00:00:00Z","isi":1,"abstract":[{"lang":"eng","text":"Let P be a finite point set in the plane. A cordinary triangle in P is a subset of P consisting of three non-collinear points such that each of the three lines determined by the three points contains at most c points of P . Motivated by a question of Erdös, and answering a question of de Zeeuw, we prove that there exists a constant c &gt; 0such that P contains a c-ordinary triangle, provided that P is not contained in the union of two lines. Furthermore, the number of c-ordinary triangles in P is Ω(| P |). "}],"publication_status":"published","publication_identifier":{"issn":["09257721"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1701.08183"}],"status":"public","type":"journal_article","_id":"793","date_created":"2018-12-11T11:48:32Z","ec_funded":1,"author":[{"orcid":"0000-0001-8485-1774","first_name":"Radoslav","last_name":"Fulek","full_name":"Fulek, Radoslav","id":"39F3FFE4-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Hossein","last_name":"Mojarrad","full_name":"Mojarrad, Hossein"},{"full_name":"Naszódi, Márton","first_name":"Márton","last_name":"Naszódi"},{"first_name":"József","last_name":"Solymosi","full_name":"Solymosi, József"},{"first_name":"Sebastian","last_name":"Stich","full_name":"Stich, Sebastian"},{"last_name":"Szedlák","first_name":"May","full_name":"Szedlák, May"}],"oa_version":"Submitted Version","project":[{"call_identifier":"FP7","grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme"}],"quality_controlled":"1","article_processing_charge":"No","volume":66,"language":[{"iso":"eng"}],"month":"01"},{"month":"12","language":[{"iso":"eng"}],"article_processing_charge":"No","volume":66,"quality_controlled":"1","oa_version":"Preprint","author":[{"orcid":"0000-0001-8485-1774","last_name":"Fulek","first_name":"Radoslav","full_name":"Fulek, Radoslav","id":"39F3FFE4-F248-11E8-B48F-1D18A9856A87"}],"date_created":"2018-12-11T11:48:32Z","_id":"794","type":"journal_article","status":"public","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1602.01346"}],"abstract":[{"text":"We show that c-planarity is solvable in quadratic time for flat clustered graphs with three clusters if the combinatorial embedding of the underlying graph is fixed. In simpler graph-theoretical terms our result can be viewed as follows. Given a graph G with the vertex set partitioned into three parts embedded on a 2-sphere, our algorithm decides if we can augment G by adding edges without creating an edge-crossing so that in the resulting spherical graph the vertices of each part induce a connected sub-graph. We proceed by a reduction to the problem of testing the existence of a perfect matching in planar bipartite graphs. We formulate our result in a slightly more general setting of cyclic clustered graphs, i.e., the simple graph obtained by contracting each cluster, where we disregard loops and multi-edges, is a cycle.","lang":"eng"}],"publication_status":"published","isi":1,"publisher":"Elsevier","date_published":"2017-12-01T00:00:00Z","title":"C-planarity of embedded cyclic c-graphs","date_updated":"2023-09-27T12:14:49Z","department":[{"_id":"UlWa"}],"citation":{"apa":"Fulek, R. (2017). C-planarity of embedded cyclic c-graphs. <i>Computational Geometry: Theory and Applications</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.comgeo.2017.06.016\">https://doi.org/10.1016/j.comgeo.2017.06.016</a>","ama":"Fulek R. C-planarity of embedded cyclic c-graphs. <i>Computational Geometry: Theory and Applications</i>. 2017;66:1-13. doi:<a href=\"https://doi.org/10.1016/j.comgeo.2017.06.016\">10.1016/j.comgeo.2017.06.016</a>","ista":"Fulek R. 2017. C-planarity of embedded cyclic c-graphs. Computational Geometry: Theory and Applications. 66, 1–13.","chicago":"Fulek, Radoslav. “C-Planarity of Embedded Cyclic c-Graphs.” <i>Computational Geometry: Theory and Applications</i>. Elsevier, 2017. <a href=\"https://doi.org/10.1016/j.comgeo.2017.06.016\">https://doi.org/10.1016/j.comgeo.2017.06.016</a>.","ieee":"R. Fulek, “C-planarity of embedded cyclic c-graphs,” <i>Computational Geometry: Theory and Applications</i>, vol. 66. Elsevier, pp. 1–13, 2017.","short":"R. Fulek, Computational Geometry: Theory and Applications 66 (2017) 1–13.","mla":"Fulek, Radoslav. “C-Planarity of Embedded Cyclic c-Graphs.” <i>Computational Geometry: Theory and Applications</i>, vol. 66, Elsevier, 2017, pp. 1–13, doi:<a href=\"https://doi.org/10.1016/j.comgeo.2017.06.016\">10.1016/j.comgeo.2017.06.016</a>."},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","external_id":{"isi":["000412039700001"]},"related_material":{"record":[{"status":"public","relation":"earlier_version","id":"1165"}]},"scopus_import":"1","intvolume":"        66","publist_id":"6860","publication":"Computational Geometry: Theory and Applications","oa":1,"acknowledgement":"I would like to thank Jan Kynčl, Dömötör Pálvölgyi and anonymous referees for many comments and suggestions that helped to improve the presentation of the result.","year":"2017","doi":"10.1016/j.comgeo.2017.06.016","page":"1 - 13","day":"01"},{"department":[{"_id":"UlWa"}],"date_updated":"2022-03-18T12:58:53Z","citation":{"ista":"Fulek R, Kynčl J, Pálvölgyi D. 2017. Unified Hanani Tutte theorem. Electronic Journal of Combinatorics. 24(3), P3.18.","chicago":"Fulek, Radoslav, Jan Kynčl, and Dömötör Pálvölgyi. “Unified Hanani Tutte Theorem.” <i>Electronic Journal of Combinatorics</i>. International Press, 2017. <a href=\"https://doi.org/10.37236/6663\">https://doi.org/10.37236/6663</a>.","ama":"Fulek R, Kynčl J, Pálvölgyi D. Unified Hanani Tutte theorem. <i>Electronic Journal of Combinatorics</i>. 2017;24(3). doi:<a href=\"https://doi.org/10.37236/6663\">10.37236/6663</a>","apa":"Fulek, R., Kynčl, J., &#38; Pálvölgyi, D. (2017). Unified Hanani Tutte theorem. <i>Electronic Journal of Combinatorics</i>. International Press. <a href=\"https://doi.org/10.37236/6663\">https://doi.org/10.37236/6663</a>","ieee":"R. Fulek, J. Kynčl, and D. Pálvölgyi, “Unified Hanani Tutte theorem,” <i>Electronic Journal of Combinatorics</i>, vol. 24, no. 3. International Press, 2017.","short":"R. Fulek, J. Kynčl, D. Pálvölgyi, Electronic Journal of Combinatorics 24 (2017).","mla":"Fulek, Radoslav, et al. “Unified Hanani Tutte Theorem.” <i>Electronic Journal of Combinatorics</i>, vol. 24, no. 3, P3.18, International Press, 2017, doi:<a href=\"https://doi.org/10.37236/6663\">10.37236/6663</a>."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","abstract":[{"text":"We introduce a common generalization of the strong Hanani–Tutte theorem and the weak Hanani–Tutte theorem: if a graph G has a drawing D in the plane where every pair of independent edges crosses an even number of times, then G has a planar drawing preserving the rotation of each vertex whose incident edges cross each other evenly in D. The theorem is implicit in the proof of the strong Hanani–Tutte theorem by Pelsmajer, Schaefer and Štefankovič. We give a new, somewhat simpler proof.","lang":"eng"}],"ddc":["000"],"publisher":"International Press","date_published":"2017-07-28T00:00:00Z","file_date_updated":"2020-07-14T12:48:06Z","title":"Unified Hanani Tutte theorem","oa":1,"doi":"10.37236/6663","day":"28","year":"2017","scopus_import":"1","publist_id":"6859","intvolume":"        24","publication":"Electronic Journal of Combinatorics","quality_controlled":"1","project":[{"call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme","grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425"}],"oa_version":"Published Version","author":[{"last_name":"Fulek","first_name":"Radoslav","orcid":"0000-0001-8485-1774","id":"39F3FFE4-F248-11E8-B48F-1D18A9856A87","full_name":"Fulek, Radoslav"},{"full_name":"Kynčl, Jan","first_name":"Jan","last_name":"Kynčl"},{"first_name":"Dömötör","last_name":"Pálvölgyi","full_name":"Pálvölgyi, Dömötör"}],"has_accepted_license":"1","month":"07","file":[{"relation":"main_file","creator":"dernst","file_id":"5853","checksum":"ef320cff0f062051e858f929be6a3581","file_size":236944,"access_level":"open_access","content_type":"application/pdf","date_updated":"2020-07-14T12:48:06Z","date_created":"2019-01-18T14:04:08Z","file_name":"2017_ElectrCombi_Fulek.pdf"}],"article_number":"P3.18","issue":"3","language":[{"iso":"eng"}],"volume":24,"article_processing_charge":"No","date_created":"2018-12-11T11:48:32Z","article_type":"original","type":"journal_article","_id":"795","publication_identifier":{"issn":["10778926"]},"status":"public","ec_funded":1},{"publist_id":"6857","intvolume":"       111","publication":"Applied Physics Letters","scopus_import":"1","acknowledgement":"This work was supported by the AFOSR MURI Quantum Photonic Matter (Grant No. 16RT0696), the AFOSR MURI Wiring Quantum Networks with Mechanical Transducers (Grant No. FA9550-15-1-0015), the Institute for Quantum Information and Matter, an NSF Physics Frontiers Center (Grant No. PHY-1125565) with the support of the Gordon and Betty Moore Foundation, and the Kavli Nanoscience Institute at Caltech. A.J.K. acknowledges the IQIM Postdoctoral Fellowship.","doi":"10.1063/1.4994661","year":"2017","day":"01","oa":1,"date_published":"2017-07-01T00:00:00Z","publisher":"American Institute of Physics","title":"Al transmon qubits on silicon on insulator for quantum device integration","publication_status":"published","abstract":[{"lang":"eng","text":"We present the fabrication and characterization of an aluminum transmon qubit on a silicon-on-insulator substrate. Key to the qubit fabrication is the use of an anhydrous hydrofluoric vapor process which selectively removes the lossy silicon oxide buried underneath the silicon device layer. For a 5.6 GHz qubit measured dispersively by a 7.1 GHz resonator, we find T1 = 3.5 μs and T∗2 = 2.2 μs. This process in principle permits the co-fabrication of silicon photonic and mechanical elements, providing a route towards chip-scale integration of electro-opto-mechanical transducers for quantum networking of superconducting microwave quantum circuits. The additional processing steps are compatible with established fabrication techniques for aluminum transmon qubits on silicon."}],"isi":1,"external_id":{"isi":["000406779700031"]},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","department":[{"_id":"JoFi"}],"date_updated":"2023-09-27T12:13:36Z","citation":{"ieee":"A. J. Keller, P. Dieterle, M. Fang, B. Berger, J. M. Fink, and O. Painter, “Al transmon qubits on silicon on insulator for quantum device integration,” <i>Applied Physics Letters</i>, vol. 111, no. 4. American Institute of Physics, 2017.","apa":"Keller, A. J., Dieterle, P., Fang, M., Berger, B., Fink, J. M., &#38; Painter, O. (2017). Al transmon qubits on silicon on insulator for quantum device integration. <i>Applied Physics Letters</i>. American Institute of Physics. <a href=\"https://doi.org/10.1063/1.4994661\">https://doi.org/10.1063/1.4994661</a>","ama":"Keller AJ, Dieterle P, Fang M, Berger B, Fink JM, Painter O. Al transmon qubits on silicon on insulator for quantum device integration. <i>Applied Physics Letters</i>. 2017;111(4). doi:<a href=\"https://doi.org/10.1063/1.4994661\">10.1063/1.4994661</a>","ista":"Keller AJ, Dieterle P, Fang M, Berger B, Fink JM, Painter O. 2017. Al transmon qubits on silicon on insulator for quantum device integration. Applied Physics Letters. 111(4), 042603.","chicago":"Keller, Andrew J, Paul Dieterle, Michael Fang, Brett Berger, Johannes M Fink, and Oskar Painter. “Al Transmon Qubits on Silicon on Insulator for Quantum Device Integration.” <i>Applied Physics Letters</i>. American Institute of Physics, 2017. <a href=\"https://doi.org/10.1063/1.4994661\">https://doi.org/10.1063/1.4994661</a>.","mla":"Keller, Andrew J., et al. “Al Transmon Qubits on Silicon on Insulator for Quantum Device Integration.” <i>Applied Physics Letters</i>, vol. 111, no. 4, 042603, American Institute of Physics, 2017, doi:<a href=\"https://doi.org/10.1063/1.4994661\">10.1063/1.4994661</a>.","short":"A.J. Keller, P. Dieterle, M. Fang, B. Berger, J.M. Fink, O. Painter, Applied Physics Letters 111 (2017)."},"publication_identifier":{"issn":["00036951"]},"status":"public","main_file_link":[{"url":"https://arxiv.org/abs/1703.10195","open_access":"1"}],"date_created":"2018-12-11T11:48:33Z","_id":"796","type":"journal_article","language":[{"iso":"eng"}],"volume":111,"article_processing_charge":"No","month":"07","article_number":"042603","issue":"4","author":[{"full_name":"Keller, Andrew J","first_name":"Andrew J","last_name":"Keller"},{"first_name":"Paul","last_name":"Dieterle","full_name":"Dieterle, Paul"},{"full_name":"Fang, Michael","last_name":"Fang","first_name":"Michael"},{"full_name":"Berger, Brett","first_name":"Brett","last_name":"Berger"},{"orcid":"0000-0001-8112-028X","first_name":"Johannes M","last_name":"Fink","full_name":"Fink, Johannes M","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Painter, Oskar","last_name":"Painter","first_name":"Oskar"}],"quality_controlled":"1","oa_version":"Submitted Version"},{"publication_identifier":{"issn":["20411723"]},"status":"public","type":"journal_article","_id":"798","date_created":"2018-12-11T11:48:33Z","ec_funded":1,"pubrep_id":"867","author":[{"id":"2D25E1F6-F248-11E8-B48F-1D18A9856A87","full_name":"Barzanjeh, Shabir","last_name":"Barzanjeh","first_name":"Shabir","orcid":"0000-0003-0415-1423"},{"id":"45598606-F248-11E8-B48F-1D18A9856A87","full_name":"Wulf, Matthias","last_name":"Wulf","first_name":"Matthias","orcid":"0000-0001-6613-1378"},{"last_name":"Peruzzo","first_name":"Matilda","orcid":"0000-0002-3415-4628","id":"3F920B30-F248-11E8-B48F-1D18A9856A87","full_name":"Peruzzo, Matilda"},{"full_name":"Kalaee, Mahmoud","last_name":"Kalaee","first_name":"Mahmoud"},{"last_name":"Dieterle","first_name":"Paul","full_name":"Dieterle, Paul"},{"full_name":"Painter, Oskar","last_name":"Painter","first_name":"Oskar"},{"id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","full_name":"Fink, Johannes M","last_name":"Fink","first_name":"Johannes M","orcid":"0000-0001-8112-028X"}],"oa_version":"Published Version","project":[{"name":"Hybrid Optomechanical Technologies","grant_number":"732894","_id":"257EB838-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"},{"call_identifier":"H2020","_id":"258047B6-B435-11E9-9278-68D0E5697425","grant_number":"707438","name":"Microwave-to-Optical Quantum Link: Quantum Teleportation and Quantum Illumination with cavity Optomechanics"}],"quality_controlled":"1","volume":8,"article_processing_charge":"Yes (in subscription journal)","language":[{"iso":"eng"}],"file":[{"relation":"main_file","access_level":"open_access","file_size":1467696,"checksum":"b68dafa71d1834c23b742cd9987a3d5f","file_id":"5145","creator":"system","date_created":"2018-12-12T10:15:25Z","date_updated":"2020-07-14T12:48:06Z","content_type":"application/pdf","file_name":"IST-2017-867-v1+1_s41467-017-01304-x.pdf"}],"article_number":"1304","issue":"1","month":"10","has_accepted_license":"1","year":"2017","doi":"10.1038/s41467-017-01304-x","day":"16","oa":1,"publication":"Nature Communications","publist_id":"6855","intvolume":"         8","scopus_import":"1","external_id":{"isi":["000412999700021"]},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","citation":{"short":"S. Barzanjeh, M. Wulf, M. Peruzzo, M. Kalaee, P. Dieterle, O. Painter, J.M. Fink, Nature Communications 8 (2017).","mla":"Barzanjeh, Shabir, et al. “Mechanical on Chip Microwave Circulator.” <i>Nature Communications</i>, vol. 8, no. 1, 1304, Nature Publishing Group, 2017, doi:<a href=\"https://doi.org/10.1038/s41467-017-01304-x\">10.1038/s41467-017-01304-x</a>.","apa":"Barzanjeh, S., Wulf, M., Peruzzo, M., Kalaee, M., Dieterle, P., Painter, O., &#38; Fink, J. M. (2017). Mechanical on chip microwave circulator. <i>Nature Communications</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/s41467-017-01304-x\">https://doi.org/10.1038/s41467-017-01304-x</a>","ama":"Barzanjeh S, Wulf M, Peruzzo M, et al. Mechanical on chip microwave circulator. <i>Nature Communications</i>. 2017;8(1). doi:<a href=\"https://doi.org/10.1038/s41467-017-01304-x\">10.1038/s41467-017-01304-x</a>","ista":"Barzanjeh S, Wulf M, Peruzzo M, Kalaee M, Dieterle P, Painter O, Fink JM. 2017. Mechanical on chip microwave circulator. Nature Communications. 8(1), 1304.","chicago":"Barzanjeh, Shabir, Matthias Wulf, Matilda Peruzzo, Mahmoud Kalaee, Paul Dieterle, Oskar Painter, and Johannes M Fink. “Mechanical on Chip Microwave Circulator.” <i>Nature Communications</i>. Nature Publishing Group, 2017. <a href=\"https://doi.org/10.1038/s41467-017-01304-x\">https://doi.org/10.1038/s41467-017-01304-x</a>.","ieee":"S. Barzanjeh <i>et al.</i>, “Mechanical on chip microwave circulator,” <i>Nature Communications</i>, vol. 8, no. 1. Nature Publishing Group, 2017."},"department":[{"_id":"JoFi"}],"date_updated":"2023-09-27T12:11:28Z","title":"Mechanical on chip microwave circulator","publisher":"Nature Publishing Group","date_published":"2017-10-16T00:00:00Z","file_date_updated":"2020-07-14T12:48:06Z","ddc":["539"],"isi":1,"publication_status":"published","abstract":[{"lang":"eng","text":"Nonreciprocal circuit elements form an integral part of modern measurement and communication systems. Mathematically they require breaking of time-reversal symmetry, typically achieved using magnetic materials and more recently using the quantum Hall effect, parametric permittivity modulation or Josephson nonlinearities. Here we demonstrate an on-chip magnetic-free circulator based on reservoir-engineered electromechanic interactions. Directional circulation is achieved with controlled phase-sensitive interference of six distinct electro-mechanical signal conversion paths. The presented circulator is compact, its silicon-on-insulator platform is compatible with both superconducting qubits and silicon photonics, and its noise performance is close to the quantum limit. With a high dynamic range, a tunable bandwidth of up to 30 MHz and an in situ reconfigurability as beam splitter or wavelength converter, it could pave the way for superconducting qubit processors with multiplexed on-chip signal processing and readout."}]},{"language":[{"iso":"eng"}],"article_processing_charge":"No","month":"03","has_accepted_license":"1","file":[{"file_name":"Final_EPNOE.pdf","content_type":"application/pdf","date_created":"2020-06-29T14:13:44Z","date_updated":"2020-07-14T12:48:06Z","file_id":"8048","checksum":"4182aeee32c9263a626a7e522f1934f5","creator":"sfreunbe","access_level":"open_access","file_size":3339826,"relation":"main_file"}],"author":[{"first_name":"Soon","last_name":"Yee Liew","full_name":"Yee Liew, Soon"},{"full_name":"Thielemans, Wim","first_name":"Wim","last_name":"Thielemans"},{"full_name":"Freunberger, Stefan Alexander","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","orcid":"0000-0003-2902-5319","first_name":"Stefan Alexander","last_name":"Freunberger"},{"full_name":"Spirk, Stefan","first_name":"Stefan","last_name":"Spirk"}],"quality_controlled":"1","oa_version":"Submitted Version","status":"public","publication_identifier":{"issn":["2191-5407","2191-5415"],"isbn":["9783319507538","9783319507545"]},"date_created":"2020-06-19T08:11:08Z","_id":"7980","type":"book_chapter","date_published":"2017-03-26T00:00:00Z","file_date_updated":"2020-07-14T12:48:06Z","publisher":"Springer Nature","title":"Polysaccharides in supercapacitors","abstract":[{"text":"In this part, the use of polysaccharides, either directly through composite approaches, or by carbonization will be described. In many cases, materials are obtained which are competitive in terms of capacitance and cycle lifetime. In this part, the use of polysaccharides, either directly through composite approaches, or by carbonization will be described. In many cases, materials are obtained which are competitive in terms of capacitance and cycle lifetime. The following part will focus mainly on cellulosic composites with conductive polymers since cellulose is most abundant and therefore has attracted much more research interest in this field whereas in the second part also other polysaccharides, such as chitin, xylans, alginates, pectins, dextrans and caragenaans have been used in carbonization experiments.","lang":"eng"}],"publication_status":"published","ddc":["540","541"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","alternative_title":["SpringerBriefs in Molecular Science"],"date_updated":"2021-01-12T08:16:19Z","extern":"1","citation":{"short":"S. Yee Liew, W. Thielemans, S.A. Freunberger, S. Spirk, in:, S. Yee Liew, W. Thielemans, S.A. Freunberger, S. Spirk (Eds.), Polysaccharide Based Supercapacitors, Springer Nature, 2017, pp. 15–53.","mla":"Yee Liew, Soon, et al. “Polysaccharides in Supercapacitors.” <i>Polysaccharide Based Supercapacitors</i>, edited by Soon Yee Liew et al., Springer Nature, 2017, pp. 15–53, doi:<a href=\"https://doi.org/10.1007/978-3-319-50754-5_2\">10.1007/978-3-319-50754-5_2</a>.","apa":"Yee Liew, S., Thielemans, W., Freunberger, S. A., &#38; Spirk, S. (2017). Polysaccharides in supercapacitors. In S. Yee Liew, W. Thielemans, S. A. Freunberger, &#38; S. Spirk (Eds.), <i>Polysaccharide Based Supercapacitors</i> (pp. 15–53). Springer Nature. <a href=\"https://doi.org/10.1007/978-3-319-50754-5_2\">https://doi.org/10.1007/978-3-319-50754-5_2</a>","ama":"Yee Liew S, Thielemans W, Freunberger SA, Spirk S. Polysaccharides in supercapacitors. In: Yee Liew S, Thielemans W, Freunberger SA, Spirk S, eds. <i>Polysaccharide Based Supercapacitors</i>. Springer Nature; 2017:15-53. doi:<a href=\"https://doi.org/10.1007/978-3-319-50754-5_2\">10.1007/978-3-319-50754-5_2</a>","chicago":"Yee Liew, Soon, Wim Thielemans, Stefan Alexander Freunberger, and Stefan Spirk. “Polysaccharides in Supercapacitors.” In <i>Polysaccharide Based Supercapacitors</i>, edited by Soon Yee Liew, Wim Thielemans, Stefan Alexander Freunberger, and Stefan Spirk, 15–53. Springer Nature, 2017. <a href=\"https://doi.org/10.1007/978-3-319-50754-5_2\">https://doi.org/10.1007/978-3-319-50754-5_2</a>.","ista":"Yee Liew S, Thielemans W, Freunberger SA, Spirk S. 2017.Polysaccharides in supercapacitors. In: Polysaccharide Based Supercapacitors. SpringerBriefs in Molecular Science, , 15–53.","ieee":"S. Yee Liew, W. Thielemans, S. A. Freunberger, and S. Spirk, “Polysaccharides in supercapacitors,” in <i>Polysaccharide Based Supercapacitors</i>, S. Yee Liew, W. Thielemans, S. A. Freunberger, and S. Spirk, Eds. Springer Nature, 2017, pp. 15–53."},"publication":"Polysaccharide Based Supercapacitors","editor":[{"first_name":"Soon","last_name":"Yee Liew","full_name":"Yee Liew, Soon"},{"full_name":"Thielemans, Wim","last_name":"Thielemans","first_name":"Wim"},{"orcid":"0000-0003-2902-5319","last_name":"Freunberger","first_name":"Stefan Alexander","full_name":"Freunberger, Stefan Alexander","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425"},{"first_name":"Stefan","last_name":"Spirk","full_name":"Spirk, Stefan"}],"doi":"10.1007/978-3-319-50754-5_2","page":"15-53","year":"2017","day":"26","oa":1},{"publication":"Angewandte Chemie","intvolume":"       129","oa":1,"page":"15934-15938","doi":"10.1002/ange.201709351","year":"2017","day":"04","ddc":["540"],"abstract":[{"text":"Aprotische Natrium‐O2‐Batterien basieren auf der reversiblen Bildung und Auflösung von Natriumsuperoxid (NaO2) während des Zellbetriebs. Nebenreaktionen des Elektrolyten und der Elektrode mit dem stark nukleophilen und basischen NaO2 führen zu mangelhafter Zyklenstabilität. Seine Reaktivität allein kann die Nebenreaktionen und schlechte Reversibilität jedoch nicht schlüssig erklären. Hier wird gezeigt, dass Singulett‐Sauerstoff (1O2) in allen Phasen des Betriebs entsteht und eine Hauptursache für Nebenreaktionen ist. 1O2 wurde in situ und ex situ mit einem 1O2‐Fänger detektiert, der schnell und selektiv ein Addukt mit 1O2 bildet. Mechanistisch betrachtet entsteht 1O2 entweder durch protonenunterstützte Disproportionierung von Superoxid während des Entladens, Lagerns und Ladens unter ca. 3.3 V oder durch direkte elektrochemische 1O2‐Entwicklung über ca. 3.3 V. Spuren von Wasser ermöglichen hohe Kapazitäten, beschleunigen aber auch Nebenreaktionen. Daher muss das hochreaktive 1O2 unbedingt kontrolliert werden, um die Zelle reversibel zu betreiben.","lang":"ger"}],"publication_status":"published","title":"Singulett-Sauerstoff in der aprotischen Natrium-O2-Batterie","date_published":"2017-12-04T00:00:00Z","publisher":"Wiley","file_date_updated":"2020-07-14T12:48:06Z","citation":{"ista":"Schafzahl L, Mahne N, Schafzahl B, Wilkening M, Slugovc C, Borisov SM, Freunberger SA. 2017. Singulett-Sauerstoff in der aprotischen Natrium-O2-Batterie. Angewandte Chemie. 129(49), 15934–15938.","ama":"Schafzahl L, Mahne N, Schafzahl B, et al. Singulett-Sauerstoff in der aprotischen Natrium-O2-Batterie. <i>Angewandte Chemie</i>. 2017;129(49):15934-15938. doi:<a href=\"https://doi.org/10.1002/ange.201709351\">10.1002/ange.201709351</a>","chicago":"Schafzahl, Lukas, Nika Mahne, Bettina Schafzahl, Martin Wilkening, Christian Slugovc, Sergey M. Borisov, and Stefan Alexander Freunberger. “Singulett-Sauerstoff in Der Aprotischen Natrium-O2-Batterie.” <i>Angewandte Chemie</i>. Wiley, 2017. <a href=\"https://doi.org/10.1002/ange.201709351\">https://doi.org/10.1002/ange.201709351</a>.","apa":"Schafzahl, L., Mahne, N., Schafzahl, B., Wilkening, M., Slugovc, C., Borisov, S. M., &#38; Freunberger, S. A. (2017). Singulett-Sauerstoff in der aprotischen Natrium-O2-Batterie. <i>Angewandte Chemie</i>. Wiley. <a href=\"https://doi.org/10.1002/ange.201709351\">https://doi.org/10.1002/ange.201709351</a>","ieee":"L. Schafzahl <i>et al.</i>, “Singulett-Sauerstoff in der aprotischen Natrium-O2-Batterie,” <i>Angewandte Chemie</i>, vol. 129, no. 49. Wiley, pp. 15934–15938, 2017.","short":"L. Schafzahl, N. Mahne, B. Schafzahl, M. Wilkening, C. Slugovc, S.M. Borisov, S.A. Freunberger, Angewandte Chemie 129 (2017) 15934–15938.","mla":"Schafzahl, Lukas, et al. “Singulett-Sauerstoff in Der Aprotischen Natrium-O2-Batterie.” <i>Angewandte Chemie</i>, vol. 129, no. 49, Wiley, 2017, pp. 15934–38, doi:<a href=\"https://doi.org/10.1002/ange.201709351\">10.1002/ange.201709351</a>."},"date_updated":"2021-01-12T08:16:20Z","extern":"1","tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","_id":"7981","article_type":"original","date_created":"2020-06-19T08:22:06Z","status":"public","publication_identifier":{"issn":["0044-8249"]},"issue":"49","file":[{"date_created":"2020-06-19T11:39:09Z","date_updated":"2020-07-14T12:48:06Z","content_type":"application/pdf","file_name":"2017_AngChemieDT_Schafzahl.pdf","relation":"main_file","access_level":"open_access","file_size":988125,"file_id":"7987","checksum":"38f2c2383bc9573f6770c1dba72d7a9a","creator":"dernst"}],"month":"12","has_accepted_license":"1","article_processing_charge":"No","volume":129,"language":[{"iso":"eng"}],"oa_version":"Published Version","quality_controlled":"1","author":[{"last_name":"Schafzahl","first_name":"Lukas","full_name":"Schafzahl, Lukas"},{"full_name":"Mahne, Nika","last_name":"Mahne","first_name":"Nika"},{"full_name":"Schafzahl, Bettina","last_name":"Schafzahl","first_name":"Bettina"},{"first_name":"Martin","last_name":"Wilkening","full_name":"Wilkening, Martin"},{"full_name":"Slugovc, Christian","first_name":"Christian","last_name":"Slugovc"},{"last_name":"Borisov","first_name":"Sergey M.","full_name":"Borisov, Sergey M."},{"first_name":"Stefan Alexander","last_name":"Freunberger","orcid":"0000-0003-2902-5319","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","full_name":"Freunberger, Stefan Alexander"}]},{"has_accepted_license":"1","month":"06","issue":"7","article_number":"17091","file":[{"file_name":"NEnergy_Comment_final.pdf","date_updated":"2020-07-14T12:48:06Z","date_created":"2020-06-29T13:26:55Z","content_type":"application/pdf","file_size":817665,"access_level":"open_access","creator":"sfreunbe","checksum":"2564255b76f5346a32e764dbfd17fa2f","file_id":"8046","relation":"main_file"}],"language":[{"iso":"eng"}],"article_processing_charge":"No","volume":2,"quality_controlled":"1","oa_version":"Submitted Version","author":[{"id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","full_name":"Freunberger, Stefan Alexander","last_name":"Freunberger","first_name":"Stefan Alexander","orcid":"0000-0003-2902-5319"}],"date_created":"2020-06-19T08:23:47Z","_id":"7982","type":"journal_article","article_type":"original","main_file_link":[{"url":"https://arxiv.org/abs/2002.00712","open_access":"1"}],"publication_identifier":{"issn":["2058-7546"]},"status":"public","abstract":[{"lang":"eng","text":"Beyond-intercalation batteries promise a step-change in energy storage compared to intercalation-based lithium-ion and sodium-ion batteries. However, only performance metrics that include all cell components and operation parameters can tell whether a true advance over intercalation batteries has been achieved."}],"publication_status":"published","ddc":["540","546","541"],"publisher":"Springer Nature","file_date_updated":"2020-07-14T12:48:06Z","date_published":"2017-06-05T00:00:00Z","title":"True performance metrics in beyond-intercalation batteries","date_updated":"2021-01-12T08:16:20Z","extern":"1","citation":{"ieee":"S. A. Freunberger, “True performance metrics in beyond-intercalation batteries,” <i>Nature Energy</i>, vol. 2, no. 7. Springer Nature, 2017.","apa":"Freunberger, S. A. (2017). True performance metrics in beyond-intercalation batteries. <i>Nature Energy</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nenergy.2017.91\">https://doi.org/10.1038/nenergy.2017.91</a>","ama":"Freunberger SA. True performance metrics in beyond-intercalation batteries. <i>Nature Energy</i>. 2017;2(7). doi:<a href=\"https://doi.org/10.1038/nenergy.2017.91\">10.1038/nenergy.2017.91</a>","chicago":"Freunberger, Stefan Alexander. “True Performance Metrics in Beyond-Intercalation Batteries.” <i>Nature Energy</i>. Springer Nature, 2017. <a href=\"https://doi.org/10.1038/nenergy.2017.91\">https://doi.org/10.1038/nenergy.2017.91</a>.","ista":"Freunberger SA. 2017. True performance metrics in beyond-intercalation batteries. Nature Energy. 2(7), 17091.","short":"S.A. Freunberger, Nature Energy 2 (2017).","mla":"Freunberger, Stefan Alexander. “True Performance Metrics in Beyond-Intercalation Batteries.” <i>Nature Energy</i>, vol. 2, no. 7, 17091, Springer Nature, 2017, doi:<a href=\"https://doi.org/10.1038/nenergy.2017.91\">10.1038/nenergy.2017.91</a>."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","external_id":{"arxiv":["2002.00712"]},"intvolume":"         2","arxiv":1,"publication":"Nature Energy","oa":1,"year":"2017","doi":"10.1038/nenergy.2017.91","day":"05"},{"title":"Singlet oxygen generation as a major cause for parasitic reactions during cycling of aprotic lithium–oxygen batteries","date_published":"2017-03-20T00:00:00Z","publisher":"Springer Nature","publication_status":"published","external_id":{"arxiv":["1711.10340"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"short":"N. Mahne, B. Schafzahl, C. Leypold, M. Leypold, S. Grumm, A. Leitgeb, G.A. Strohmeier, M. Wilkening, O. Fontaine, D. Kramer, C. Slugovc, S.M. Borisov, S.A. Freunberger, Nature Energy 2 (2017).","mla":"Mahne, Nika, et al. “Singlet Oxygen Generation as a Major Cause for Parasitic Reactions during Cycling of Aprotic Lithium–Oxygen Batteries.” <i>Nature Energy</i>, vol. 2, no. 5, 17036, Springer Nature, 2017, doi:<a href=\"https://doi.org/10.1038/nenergy.2017.36\">10.1038/nenergy.2017.36</a>.","ista":"Mahne N, Schafzahl B, Leypold C, Leypold M, Grumm S, Leitgeb A, Strohmeier GA, Wilkening M, Fontaine O, Kramer D, Slugovc C, Borisov SM, Freunberger SA. 2017. Singlet oxygen generation as a major cause for parasitic reactions during cycling of aprotic lithium–oxygen batteries. Nature Energy. 2(5), 17036.","chicago":"Mahne, Nika, Bettina Schafzahl, Christian Leypold, Mario Leypold, Sandra Grumm, Anita Leitgeb, Gernot A. Strohmeier, et al. “Singlet Oxygen Generation as a Major Cause for Parasitic Reactions during Cycling of Aprotic Lithium–Oxygen Batteries.” <i>Nature Energy</i>. Springer Nature, 2017. <a href=\"https://doi.org/10.1038/nenergy.2017.36\">https://doi.org/10.1038/nenergy.2017.36</a>.","ama":"Mahne N, Schafzahl B, Leypold C, et al. Singlet oxygen generation as a major cause for parasitic reactions during cycling of aprotic lithium–oxygen batteries. <i>Nature Energy</i>. 2017;2(5). doi:<a href=\"https://doi.org/10.1038/nenergy.2017.36\">10.1038/nenergy.2017.36</a>","apa":"Mahne, N., Schafzahl, B., Leypold, C., Leypold, M., Grumm, S., Leitgeb, A., … Freunberger, S. A. (2017). Singlet oxygen generation as a major cause for parasitic reactions during cycling of aprotic lithium–oxygen batteries. <i>Nature Energy</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nenergy.2017.36\">https://doi.org/10.1038/nenergy.2017.36</a>","ieee":"N. Mahne <i>et al.</i>, “Singlet oxygen generation as a major cause for parasitic reactions during cycling of aprotic lithium–oxygen batteries,” <i>Nature Energy</i>, vol. 2, no. 5. Springer Nature, 2017."},"extern":"1","date_updated":"2021-01-12T08:16:21Z","publication":"Nature Energy","arxiv":1,"intvolume":"         2","day":"20","doi":"10.1038/nenergy.2017.36","year":"2017","oa":1,"volume":2,"article_processing_charge":"No","language":[{"iso":"eng"}],"article_number":"17036 ","issue":"5","month":"03","author":[{"full_name":"Mahne, Nika","last_name":"Mahne","first_name":"Nika"},{"full_name":"Schafzahl, Bettina","first_name":"Bettina","last_name":"Schafzahl"},{"first_name":"Christian","last_name":"Leypold","full_name":"Leypold, Christian"},{"last_name":"Leypold","first_name":"Mario","full_name":"Leypold, Mario"},{"last_name":"Grumm","first_name":"Sandra","full_name":"Grumm, Sandra"},{"full_name":"Leitgeb, Anita","last_name":"Leitgeb","first_name":"Anita"},{"first_name":"Gernot A.","last_name":"Strohmeier","full_name":"Strohmeier, Gernot A."},{"full_name":"Wilkening, Martin","first_name":"Martin","last_name":"Wilkening"},{"last_name":"Fontaine","first_name":"Olivier","full_name":"Fontaine, Olivier"},{"full_name":"Kramer, Denis","first_name":"Denis","last_name":"Kramer"},{"last_name":"Slugovc","first_name":"Christian","full_name":"Slugovc, Christian"},{"full_name":"Borisov, Sergey M.","first_name":"Sergey M.","last_name":"Borisov"},{"first_name":"Stefan Alexander","last_name":"Freunberger","orcid":"0000-0003-2902-5319","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","full_name":"Freunberger, Stefan Alexander"}],"oa_version":"Preprint","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1711.10340"}],"publication_identifier":{"issn":["2058-7546"]},"status":"public","article_type":"original","type":"journal_article","_id":"7986","date_created":"2020-06-19T10:42:33Z"},{"oa_version":"Submitted Version","quality_controlled":"1","author":[{"full_name":"Kitakura, Saeko","last_name":"Kitakura","first_name":"Saeko"},{"id":"45F536D2-F248-11E8-B48F-1D18A9856A87","full_name":"Adamowski, Maciek","first_name":"Maciek","last_name":"Adamowski","orcid":"0000-0001-6463-5257"},{"full_name":"Matsuura, Yuki","last_name":"Matsuura","first_name":"Yuki"},{"full_name":"Santuari, Luca","last_name":"Santuari","first_name":"Luca"},{"first_name":"Hirotaka","last_name":"Kouno","full_name":"Kouno, Hirotaka"},{"full_name":"Arima, Kohei","first_name":"Kohei","last_name":"Arima"},{"first_name":"Christian","last_name":"Hardtke","full_name":"Hardtke, Christian"},{"full_name":"Friml, Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","first_name":"Jirí","last_name":"Friml"},{"full_name":"Kakimoto, Tatsuo","last_name":"Kakimoto","first_name":"Tatsuo"},{"full_name":"Tanaka, Hirokazu","first_name":"Hirokazu","last_name":"Tanaka"}],"article_number":"1801-1811","file":[{"file_id":"6333","checksum":"bd3e3a94d55416739cbb19624bb977f8","creator":"dernst","access_level":"open_access","file_size":1352913,"relation":"main_file","file_name":"2017_PlantCellPhysio_Kitakura.pdf","content_type":"application/pdf","date_created":"2019-04-17T07:52:34Z","date_updated":"2020-07-14T12:48:06Z"}],"issue":"10","month":"08","has_accepted_license":"1","volume":58,"article_processing_charge":"No","language":[{"iso":"eng"}],"_id":"799","type":"journal_article","date_created":"2018-12-11T11:48:34Z","status":"public","publication_identifier":{"issn":["00320781"]},"pubrep_id":"1009","citation":{"mla":"Kitakura, Saeko, et al. “BEN3/BIG2 ARF GEF Is Involved in Brefeldin a-Sensitive Trafficking at the Trans-Golgi Network/Early Endosome in Arabidopsis Thaliana.” <i>Plant and Cell Physiology</i>, vol. 58, no. 10, 1801–1811, Oxford University Press, 2017, doi:<a href=\"https://doi.org/10.1093/pcp/pcx118\">10.1093/pcp/pcx118</a>.","short":"S. Kitakura, M. Adamowski, Y. Matsuura, L. Santuari, H. Kouno, K. Arima, C. Hardtke, J. Friml, T. Kakimoto, H. Tanaka, Plant and Cell Physiology 58 (2017).","chicago":"Kitakura, Saeko, Maciek Adamowski, Yuki Matsuura, Luca Santuari, Hirotaka Kouno, Kohei Arima, Christian Hardtke, Jiří Friml, Tatsuo Kakimoto, and Hirokazu Tanaka. “BEN3/BIG2 ARF GEF Is Involved in Brefeldin a-Sensitive Trafficking at the Trans-Golgi Network/Early Endosome in Arabidopsis Thaliana.” <i>Plant and Cell Physiology</i>. Oxford University Press, 2017. <a href=\"https://doi.org/10.1093/pcp/pcx118\">https://doi.org/10.1093/pcp/pcx118</a>.","ista":"Kitakura S, Adamowski M, Matsuura Y, Santuari L, Kouno H, Arima K, Hardtke C, Friml J, Kakimoto T, Tanaka H. 2017. BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive trafficking at the trans-Golgi network/early endosome in Arabidopsis thaliana. Plant and Cell Physiology. 58(10), 1801–1811.","ama":"Kitakura S, Adamowski M, Matsuura Y, et al. BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive trafficking at the trans-Golgi network/early endosome in Arabidopsis thaliana. <i>Plant and Cell Physiology</i>. 2017;58(10). doi:<a href=\"https://doi.org/10.1093/pcp/pcx118\">10.1093/pcp/pcx118</a>","apa":"Kitakura, S., Adamowski, M., Matsuura, Y., Santuari, L., Kouno, H., Arima, K., … Tanaka, H. (2017). BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive trafficking at the trans-Golgi network/early endosome in Arabidopsis thaliana. <i>Plant and Cell Physiology</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/pcp/pcx118\">https://doi.org/10.1093/pcp/pcx118</a>","ieee":"S. Kitakura <i>et al.</i>, “BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive trafficking at the trans-Golgi network/early endosome in Arabidopsis thaliana,” <i>Plant and Cell Physiology</i>, vol. 58, no. 10. Oxford University Press, 2017."},"department":[{"_id":"JiFr"}],"date_updated":"2023-09-27T11:00:19Z","external_id":{"pmid":["29016942"],"isi":["000413220400019"]},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","ddc":["581"],"isi":1,"publication_status":"published","abstract":[{"lang":"eng","text":"Membrane traffic at the trans-Golgi network (TGN) is crucial for correctly distributing various membrane proteins to their destination. Polarly localized auxin efflux proteins, including PIN-FORMED1 (PIN1), are dynamically transported between the endosomes and the plasma membrane (PM) in the plant cells. The intracellular trafficking of PIN1 protein is sensitive to a fungal toxin brefeldin A (BFA), which is known to inhibit guanine-nucleotide exchange factors for ADP ribosylation factors (ARF GEFs) such as GNOM. However, the molecular details of the BFA-sensitive trafficking pathway have not been revealed fully. In a previous study, we have identified an Arabidopsis mutant BFA-visualized endocytic trafficking defective 3 (ben3) which exhibited reduced sensitivity to BFA in terms of BFA-induced intracellular PIN1 agglomeration. Here, we show that BEN3 encodes a member of BIG family ARF GEFs, BIG2. Fluorescent proteins tagged BEN3/BIG2 co-localized with markers for TGN / early endosome (EE). Inspection of conditionally induced de novo synthesized PIN1 confirmed that its secretion to the PM is BFA-sensitive and established BEN3/BIG2 as a crucial component of this BFA action at the level of TGN/EE. Furthermore, ben3 mutation alleviated BFA-induced agglomeration of another TGN-localized ARF GEF BEN1/MIN7. Taken together our results suggest that BEN3/BIG2 is an ARF GEF component, which confers BFA sensitivity to the TGN/EE in Arabidopsis."}],"title":"BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive trafficking at the trans-Golgi network/early endosome in Arabidopsis thaliana","pmid":1,"file_date_updated":"2020-07-14T12:48:06Z","date_published":"2017-08-21T00:00:00Z","publisher":"Oxford University Press","oa":1,"doi":"10.1093/pcp/pcx118","year":"2017","day":"21","scopus_import":"1","publication":"Plant and Cell Physiology","publist_id":"6854","intvolume":"        58"},{"publist_id":"6853","intvolume":"         8","publication":"Nature Communications","scopus_import":"1","day":"02","doi":"10.1038/s41467-017-00936-3","year":"2017","oa":1,"date_published":"2017-10-02T00:00:00Z","publisher":"Nature Publishing Group","file_date_updated":"2020-07-14T12:48:07Z","title":"Distance-dependent inhibition facilitates focality of gamma oscillations in the dentate gyrus","publication_status":"published","abstract":[{"lang":"eng","text":"Gamma oscillations (30–150 Hz) in neuronal networks are associated with the processing and recall of information. We measured local field potentials in the dentate gyrus of freely moving mice and found that gamma activity occurs in bursts, which are highly heterogeneous in their spatial extensions, ranging from focal to global coherent events. Synaptic communication among perisomatic-inhibitory interneurons (PIIs) is thought to play an important role in the generation of hippocampal gamma patterns. However, how neuronal circuits can generate synchronous oscillations at different spatial scales is unknown. We analyzed paired recordings in dentate gyrus slices and show that synaptic signaling at interneuron-interneuron synapses is distance dependent. Synaptic strength declines whereas the duration of inhibitory signals increases with axonal distance among interconnected PIIs. Using neuronal network modeling, we show that distance-dependent inhibition generates multiple highly synchronous focal gamma bursts allowing the network to process complex inputs in parallel in flexibly organized neuronal centers."}],"isi":1,"ddc":["571"],"external_id":{"isi":["000412053100004"]},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"department":[{"_id":"PeJo"}],"date_updated":"2023-09-27T10:59:41Z","citation":{"short":"M. Strüber, J. Sauer, P.M. Jonas, M. Bartos, Nature Communications 8 (2017).","mla":"Strüber, Michael, et al. “Distance-Dependent Inhibition Facilitates Focality of Gamma Oscillations in the Dentate Gyrus.” <i>Nature Communications</i>, vol. 8, no. 1, 758, Nature Publishing Group, 2017, doi:<a href=\"https://doi.org/10.1038/s41467-017-00936-3\">10.1038/s41467-017-00936-3</a>.","ieee":"M. Strüber, J. Sauer, P. M. Jonas, and M. Bartos, “Distance-dependent inhibition facilitates focality of gamma oscillations in the dentate gyrus,” <i>Nature Communications</i>, vol. 8, no. 1. Nature Publishing Group, 2017.","ama":"Strüber M, Sauer J, Jonas PM, Bartos M. Distance-dependent inhibition facilitates focality of gamma oscillations in the dentate gyrus. <i>Nature Communications</i>. 2017;8(1). doi:<a href=\"https://doi.org/10.1038/s41467-017-00936-3\">10.1038/s41467-017-00936-3</a>","chicago":"Strüber, Michael, Jonas Sauer, Peter M Jonas, and Marlene Bartos. “Distance-Dependent Inhibition Facilitates Focality of Gamma Oscillations in the Dentate Gyrus.” <i>Nature Communications</i>. Nature Publishing Group, 2017. <a href=\"https://doi.org/10.1038/s41467-017-00936-3\">https://doi.org/10.1038/s41467-017-00936-3</a>.","ista":"Strüber M, Sauer J, Jonas PM, Bartos M. 2017. Distance-dependent inhibition facilitates focality of gamma oscillations in the dentate gyrus. Nature Communications. 8(1), 758.","apa":"Strüber, M., Sauer, J., Jonas, P. M., &#38; Bartos, M. (2017). Distance-dependent inhibition facilitates focality of gamma oscillations in the dentate gyrus. <i>Nature Communications</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/s41467-017-00936-3\">https://doi.org/10.1038/s41467-017-00936-3</a>"},"ec_funded":1,"pubrep_id":"914","status":"public","publication_identifier":{"issn":["20411723"]},"date_created":"2018-12-11T11:48:34Z","type":"journal_article","_id":"800","language":[{"iso":"eng"}],"volume":8,"article_processing_charge":"No","has_accepted_license":"1","month":"10","file":[{"file_name":"IST-2017-914-v1+1_s41467-017-00936-3.pdf","content_type":"application/pdf","date_updated":"2020-07-14T12:48:07Z","date_created":"2018-12-12T10:15:17Z","creator":"system","file_id":"5135","checksum":"7e2c7621afd5f802338e92e8619f024d","file_size":4261832,"access_level":"open_access","relation":"main_file"}],"article_number":"758","issue":"1","author":[{"first_name":"Michael","last_name":"Strüber","full_name":"Strüber, Michael"},{"full_name":"Sauer, Jonas","last_name":"Sauer","first_name":"Jonas"},{"full_name":"Jonas, Peter M","id":"353C1B58-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5001-4804","last_name":"Jonas","first_name":"Peter M"},{"full_name":"Bartos, Marlene","first_name":"Marlene","last_name":"Bartos"}],"project":[{"grant_number":"268548","_id":"25C0F108-B435-11E9-9278-68D0E5697425","name":"Nanophysiology of fast-spiking, parvalbumin-expressing GABAergic interneurons","call_identifier":"FP7"}],"quality_controlled":"1","oa_version":"Published Version"},{"date_created":"2020-06-25T12:54:46Z","_id":"8016","type":"journal_article","article_type":"original","status":"public","publication_identifier":{"issn":["0896-6273"]},"quality_controlled":"1","oa_version":"Published Version","author":[{"full_name":"Costa, Rui Ponte","first_name":"Rui Ponte","last_name":"Costa"},{"full_name":"Padamsey, Zahid","last_name":"Padamsey","first_name":"Zahid"},{"full_name":"D’Amour, James A.","first_name":"James A.","last_name":"D’Amour"},{"first_name":"Nigel J.","last_name":"Emptage","full_name":"Emptage, Nigel J."},{"last_name":"Froemke","first_name":"Robert C.","full_name":"Froemke, Robert C."},{"orcid":"0000-0003-3295-6181","last_name":"Vogels","first_name":"Tim P","full_name":"Vogels, Tim P","id":"CB6FF8D2-008F-11EA-8E08-2637E6697425"}],"month":"09","has_accepted_license":"1","issue":"1","file":[{"date_created":"2020-07-09T09:42:49Z","date_updated":"2020-07-14T12:48:08Z","content_type":"application/pdf","file_name":"2017_Neuron_Costa.pdf","relation":"main_file","access_level":"open_access","file_size":7140149,"file_id":"8103","checksum":"49fbca2821066c0965bd5678b32b6b48","creator":"cziletti"}],"language":[{"iso":"eng"}],"article_processing_charge":"No","volume":96,"oa":1,"doi":"10.1016/j.neuron.2017.09.021","year":"2017","page":"177-189.e7","day":"27","intvolume":"        96","publication":"Neuron","date_updated":"2021-01-12T08:16:32Z","extern":"1","citation":{"mla":"Costa, Rui Ponte, et al. “Synaptic Transmission Optimization Predicts Expression Loci of Long-Term Plasticity.” <i>Neuron</i>, vol. 96, no. 1, Elsevier, 2017, p. 177–189.e7, doi:<a href=\"https://doi.org/10.1016/j.neuron.2017.09.021\">10.1016/j.neuron.2017.09.021</a>.","short":"R.P. Costa, Z. Padamsey, J.A. D’Amour, N.J. Emptage, R.C. Froemke, T.P. Vogels, Neuron 96 (2017) 177–189.e7.","ieee":"R. P. Costa, Z. Padamsey, J. A. D’Amour, N. J. Emptage, R. C. Froemke, and T. P. Vogels, “Synaptic transmission optimization predicts expression loci of long-term plasticity,” <i>Neuron</i>, vol. 96, no. 1. Elsevier, p. 177–189.e7, 2017.","apa":"Costa, R. P., Padamsey, Z., D’Amour, J. A., Emptage, N. J., Froemke, R. C., &#38; Vogels, T. P. (2017). Synaptic transmission optimization predicts expression loci of long-term plasticity. <i>Neuron</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuron.2017.09.021\">https://doi.org/10.1016/j.neuron.2017.09.021</a>","chicago":"Costa, Rui Ponte, Zahid Padamsey, James A. D’Amour, Nigel J. Emptage, Robert C. Froemke, and Tim P Vogels. “Synaptic Transmission Optimization Predicts Expression Loci of Long-Term Plasticity.” <i>Neuron</i>. Elsevier, 2017. <a href=\"https://doi.org/10.1016/j.neuron.2017.09.021\">https://doi.org/10.1016/j.neuron.2017.09.021</a>.","ista":"Costa RP, Padamsey Z, D’Amour JA, Emptage NJ, Froemke RC, Vogels TP. 2017. Synaptic transmission optimization predicts expression loci of long-term plasticity. Neuron. 96(1), 177–189.e7.","ama":"Costa RP, Padamsey Z, D’Amour JA, Emptage NJ, Froemke RC, Vogels TP. Synaptic transmission optimization predicts expression loci of long-term plasticity. <i>Neuron</i>. 2017;96(1):177-189.e7. doi:<a href=\"https://doi.org/10.1016/j.neuron.2017.09.021\">10.1016/j.neuron.2017.09.021</a>"},"user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"external_id":{"pmid":["28957667"]},"abstract":[{"text":"Long-term modifications of neuronal connections are critical for reliable memory storage in the brain. However, their locus of expression—pre- or postsynaptic—is highly variable. Here we introduce a theoretical framework in which long-term plasticity performs an optimization of the postsynaptic response statistics toward a given mean with minimal variance. Consequently, the state of the synapse at the time of plasticity induction determines the ratio of pre- and postsynaptic modifications. Our theory explains the experimentally observed expression loci of the hippocampal and neocortical synaptic potentiation studies we examined. Moreover, the theory predicts presynaptic expression of long-term depression, consistent with experimental observations. At inhibitory synapses, the theory suggests a statistically efficient excitatory-inhibitory balance in which changes in inhibitory postsynaptic response statistics specifically target the mean excitation. Our results provide a unifying theory for understanding the expression mechanisms and functions of long-term synaptic transmission plasticity.","lang":"eng"}],"publication_status":"published","ddc":["570"],"date_published":"2017-09-27T00:00:00Z","file_date_updated":"2020-07-14T12:48:08Z","publisher":"Elsevier","pmid":1,"title":"Synaptic transmission optimization predicts expression loci of long-term plasticity"},{"intvolume":"       114","publication":"Proceedings of the National Academy of Sciences","day":"27","year":"2017","doi":"10.1073/pnas.1701812114","page":"6666-6674","oa":1,"pmid":1,"publisher":"Proceedings of the National Academy of Sciences","date_published":"2017-06-27T00:00:00Z","title":"Inhibitory engrams in perception and memory","publication_status":"published","abstract":[{"text":"Nervous systems use excitatory cell assemblies to encode and represent sensory percepts. Similarly, synaptically connected cell assemblies or \"engrams\" are thought to represent memories of past experience. Multiple lines of recent evidence indicate that brain systems create and use inhibitory replicas of excitatory representations for important cognitive functions. Such matched \"inhibitory engrams\" can form through homeostatic potentiation of inhibition onto postsynaptic cells that show increased levels of excitation. Inhibitory engrams can reduce behavioral responses to familiar stimuli, thereby resulting in behavioral habituation. In addition, by preventing inappropriate activation of excitatory memory engrams, inhibitory engrams can make memories quiescent, stored in a latent form that is available for context-relevant activation. In neural networks with balanced excitatory and inhibitory engrams, the release of innate responses and recall of associative memories can occur through focused disinhibition. Understanding mechanisms that regulate the formation and expression of inhibitory engrams in vivo may help not only to explain key features of cognition but also to provide insight into transdiagnostic traits associated with psychiatric conditions such as autism, schizophrenia, and posttraumatic stress disorder. ","lang":"eng"}],"external_id":{"pmid":["28611219"]},"user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","extern":"1","date_updated":"2021-01-12T08:16:33Z","citation":{"apa":"Barron, H. C., Vogels, T. P., Behrens, T. E., &#38; Ramaswami, M. (2017). Inhibitory engrams in perception and memory. <i>Proceedings of the National Academy of Sciences</i>. Proceedings of the National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1701812114\">https://doi.org/10.1073/pnas.1701812114</a>","ama":"Barron HC, Vogels TP, Behrens TE, Ramaswami M. Inhibitory engrams in perception and memory. <i>Proceedings of the National Academy of Sciences</i>. 2017;114(26):6666-6674. doi:<a href=\"https://doi.org/10.1073/pnas.1701812114\">10.1073/pnas.1701812114</a>","ista":"Barron HC, Vogels TP, Behrens TE, Ramaswami M. 2017. Inhibitory engrams in perception and memory. Proceedings of the National Academy of Sciences. 114(26), 6666–6674.","chicago":"Barron, Helen C., Tim P Vogels, Timothy E. Behrens, and Mani Ramaswami. “Inhibitory Engrams in Perception and Memory.” <i>Proceedings of the National Academy of Sciences</i>. Proceedings of the National Academy of Sciences, 2017. <a href=\"https://doi.org/10.1073/pnas.1701812114\">https://doi.org/10.1073/pnas.1701812114</a>.","ieee":"H. C. Barron, T. P. Vogels, T. E. Behrens, and M. Ramaswami, “Inhibitory engrams in perception and memory,” <i>Proceedings of the National Academy of Sciences</i>, vol. 114, no. 26. Proceedings of the National Academy of Sciences, pp. 6666–6674, 2017.","short":"H.C. Barron, T.P. Vogels, T.E. Behrens, M. Ramaswami, Proceedings of the National Academy of Sciences 114 (2017) 6666–6674.","mla":"Barron, Helen C., et al. “Inhibitory Engrams in Perception and Memory.” <i>Proceedings of the National Academy of Sciences</i>, vol. 114, no. 26, Proceedings of the National Academy of Sciences, 2017, pp. 6666–74, doi:<a href=\"https://doi.org/10.1073/pnas.1701812114\">10.1073/pnas.1701812114</a>."},"status":"public","publication_identifier":{"issn":["0027-8424"],"eissn":["1091-6490"]},"main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5495250/","open_access":"1"}],"date_created":"2020-06-25T12:56:58Z","article_type":"original","_id":"8018","type":"journal_article","language":[{"iso":"eng"}],"volume":114,"article_processing_charge":"No","month":"06","issue":"26","author":[{"full_name":"Barron, Helen C.","last_name":"Barron","first_name":"Helen C."},{"full_name":"Vogels, Tim P","id":"CB6FF8D2-008F-11EA-8E08-2637E6697425","orcid":"0000-0003-3295-6181","first_name":"Tim P","last_name":"Vogels"},{"last_name":"Behrens","first_name":"Timothy E.","full_name":"Behrens, Timothy E."},{"full_name":"Ramaswami, Mani","last_name":"Ramaswami","first_name":"Mani"}],"quality_controlled":"1","oa_version":"Published Version"},{"publist_id":"6848","intvolume":"       170","publication":"Cell","scopus_import":"1","day":"24","year":"2017","page":"956 - 972","doi":"10.1016/j.cell.2017.07.038","oa":1,"file_date_updated":"2020-07-14T12:48:08Z","publisher":"Cell Press","date_published":"2017-08-24T00:00:00Z","title":"DNA cross-bridging shapes a single nucleus from a set of mitotic chromosomes","publication_status":"published","abstract":[{"lang":"eng","text":"Eukaryotic cells store their chromosomes in a single nucleus. This is important to maintain genomic integrity, as chromosomes packaged into separate nuclei (micronuclei) are prone to massive DNA damage. During mitosis, higher eukaryotes disassemble their nucleus and release individualized chromosomes for segregation. How numerous chromosomes subsequently reform a single nucleus has remained unclear. Using image-based screening of human cells, we identified barrier-to-autointegration factor (BAF) as a key factor guiding membranes to form a single nucleus. Unexpectedly, nuclear assembly does not require BAF?s association with inner nuclear membrane proteins but instead relies on BAF?s ability to bridge distant DNA sites. Live-cell imaging and in vitro reconstitution showed that BAF enriches around the mitotic chromosome ensemble to induce a densely cross-bridged chromatin layer that is mechanically stiff and limits membranes to the surface. Our study reveals that BAF-mediated changes in chromosome mechanics underlie nuclear assembly with broad implications for proper genome function."}],"ddc":["570"],"isi":1,"external_id":{"isi":["000408372400014"]},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)"},"department":[{"_id":"CaHe"}],"date_updated":"2023-09-27T10:59:14Z","citation":{"apa":"Samwer, M., Schneider, M., Hoefler, R., Schmalhorst, P. S., Jude, J., Zuber, J., &#38; Gerlic, D. (2017). DNA cross-bridging shapes a single nucleus from a set of mitotic chromosomes. <i>Cell</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cell.2017.07.038\">https://doi.org/10.1016/j.cell.2017.07.038</a>","chicago":"Samwer, Matthias, Maximilian Schneider, Rudolf Hoefler, Philipp S Schmalhorst, Julian Jude, Johannes Zuber, and Daniel Gerlic. “DNA Cross-Bridging Shapes a Single Nucleus from a Set of Mitotic Chromosomes.” <i>Cell</i>. Cell Press, 2017. <a href=\"https://doi.org/10.1016/j.cell.2017.07.038\">https://doi.org/10.1016/j.cell.2017.07.038</a>.","ista":"Samwer M, Schneider M, Hoefler R, Schmalhorst PS, Jude J, Zuber J, Gerlic D. 2017. DNA cross-bridging shapes a single nucleus from a set of mitotic chromosomes. Cell. 170(5), 956–972.","ama":"Samwer M, Schneider M, Hoefler R, et al. DNA cross-bridging shapes a single nucleus from a set of mitotic chromosomes. <i>Cell</i>. 2017;170(5):956-972. doi:<a href=\"https://doi.org/10.1016/j.cell.2017.07.038\">10.1016/j.cell.2017.07.038</a>","ieee":"M. Samwer <i>et al.</i>, “DNA cross-bridging shapes a single nucleus from a set of mitotic chromosomes,” <i>Cell</i>, vol. 170, no. 5. Cell Press, pp. 956–972, 2017.","mla":"Samwer, Matthias, et al. “DNA Cross-Bridging Shapes a Single Nucleus from a Set of Mitotic Chromosomes.” <i>Cell</i>, vol. 170, no. 5, Cell Press, 2017, pp. 956–72, doi:<a href=\"https://doi.org/10.1016/j.cell.2017.07.038\">10.1016/j.cell.2017.07.038</a>.","short":"M. Samwer, M. Schneider, R. Hoefler, P.S. Schmalhorst, J. Jude, J. Zuber, D. Gerlic, Cell 170 (2017) 956–972."},"status":"public","publication_identifier":{"issn":["00928674"]},"date_created":"2018-12-11T11:48:35Z","_id":"803","type":"journal_article","language":[{"iso":"eng"}],"volume":170,"acknowledged_ssus":[{"_id":"Bio"}],"article_processing_charge":"No","month":"08","has_accepted_license":"1","file":[{"file_name":"2017_Cell_Samwer.pdf","content_type":"application/pdf","date_created":"2019-01-18T13:45:40Z","date_updated":"2020-07-14T12:48:08Z","file_id":"5852","checksum":"64897b0c5373f22273f598e4672c60ff","creator":"dernst","access_level":"open_access","file_size":17666637,"relation":"main_file"}],"issue":"5","author":[{"last_name":"Samwer","first_name":"Matthias","full_name":"Samwer, Matthias"},{"full_name":"Schneider, Maximilian","first_name":"Maximilian","last_name":"Schneider"},{"first_name":"Rudolf","last_name":"Hoefler","full_name":"Hoefler, Rudolf"},{"full_name":"Schmalhorst, Philipp S","id":"309D50DA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5795-0133","last_name":"Schmalhorst","first_name":"Philipp S"},{"first_name":"Julian","last_name":"Jude","full_name":"Jude, Julian"},{"last_name":"Zuber","first_name":"Johannes","full_name":"Zuber, Johannes"},{"full_name":"Gerlic, Daniel","last_name":"Gerlic","first_name":"Daniel"}],"quality_controlled":"1","oa_version":"Published Version"},{"date_updated":"2023-09-27T10:58:45Z","department":[{"_id":"CaHe"}],"citation":{"apa":"Schmalhorst, P. S., Deluweit, F., Scherrers, R., Heisenberg, C.-P. J., &#38; Sikora, M. K. (2017). Overcoming the limitations of the MARTINI force field in simulations of polysaccharides. <i>Journal of Chemical Theory and Computation</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.jctc.7b00374\">https://doi.org/10.1021/acs.jctc.7b00374</a>","ama":"Schmalhorst PS, Deluweit F, Scherrers R, Heisenberg C-PJ, Sikora MK. Overcoming the limitations of the MARTINI force field in simulations of polysaccharides. <i>Journal of Chemical Theory and Computation</i>. 2017;13(10):5039-5053. doi:<a href=\"https://doi.org/10.1021/acs.jctc.7b00374\">10.1021/acs.jctc.7b00374</a>","ista":"Schmalhorst PS, Deluweit F, Scherrers R, Heisenberg C-PJ, Sikora MK. 2017. Overcoming the limitations of the MARTINI force field in simulations of polysaccharides. Journal of Chemical Theory and Computation. 13(10), 5039–5053.","chicago":"Schmalhorst, Philipp S, Felix Deluweit, Roger Scherrers, Carl-Philipp J Heisenberg, and Mateusz K Sikora. “Overcoming the Limitations of the MARTINI Force Field in Simulations of Polysaccharides.” <i>Journal of Chemical Theory and Computation</i>. American Chemical Society, 2017. <a href=\"https://doi.org/10.1021/acs.jctc.7b00374\">https://doi.org/10.1021/acs.jctc.7b00374</a>.","ieee":"P. S. Schmalhorst, F. Deluweit, R. Scherrers, C.-P. J. Heisenberg, and M. K. Sikora, “Overcoming the limitations of the MARTINI force field in simulations of polysaccharides,” <i>Journal of Chemical Theory and Computation</i>, vol. 13, no. 10. American Chemical Society, pp. 5039–5053, 2017.","mla":"Schmalhorst, Philipp S., et al. “Overcoming the Limitations of the MARTINI Force Field in Simulations of Polysaccharides.” <i>Journal of Chemical Theory and Computation</i>, vol. 13, no. 10, American Chemical Society, 2017, pp. 5039–53, doi:<a href=\"https://doi.org/10.1021/acs.jctc.7b00374\">10.1021/acs.jctc.7b00374</a>.","short":"P.S. Schmalhorst, F. Deluweit, R. Scherrers, C.-P.J. Heisenberg, M.K. Sikora, Journal of Chemical Theory and Computation 13 (2017) 5039–5053."},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","external_id":{"isi":["000412965700036"]},"abstract":[{"lang":"eng","text":"Polysaccharides (carbohydrates) are key regulators of a large number of cell biological processes. However, precise biochemical or genetic manipulation of these often complex structures is laborious and hampers experimental structure–function studies. Molecular Dynamics (MD) simulations provide a valuable alternative tool to generate and test hypotheses on saccharide function. Yet, currently used MD force fields often overestimate the aggregation propensity of polysaccharides, affecting the usability of those simulations. Here we tested MARTINI, a popular coarse-grained (CG) force field for biological macromolecules, for its ability to accurately represent molecular forces between saccharides. To this end, we calculated a thermodynamic solution property, the second virial coefficient of the osmotic pressure (B22). Comparison with light scattering experiments revealed a nonphysical aggregation of a prototypical polysaccharide in MARTINI, pointing at an imbalance of the nonbonded solute–solute, solute–water, and water–water interactions. This finding also applies to smaller oligosaccharides which were all found to aggregate in simulations even at moderate concentrations, well below their solubility limit. Finally, we explored the influence of the Lennard-Jones (LJ) interaction between saccharide molecules and propose a simple scaling of the LJ interaction strength that makes MARTINI more reliable for the simulation of saccharides."}],"publication_status":"published","isi":1,"publisher":"American Chemical Society","date_published":"2017-10-10T00:00:00Z","title":"Overcoming the limitations of the MARTINI force field in simulations of polysaccharides","oa":1,"acknowledgement":"P.S.S. was supported by research fellowship 2811/1-1 from the German Research Foundation (DFG), and M.S. was supported by EMBO Long Term Fellowship ALTF 187-2013 and Grant GC65-32 from the  Interdisciplinary Centre for Mathematical and Computational Modelling (ICM), University of Warsaw, Poland. The authors thank Antje Potthast, Marek Cieplak, Tomasz Włodarski, and Damien Thompson for fruitful discussions and the IST Austria Scientific Computing Facility for support.","doi":"10.1021/acs.jctc.7b00374","day":"10","page":"5039 - 5053","year":"2017","scopus_import":"1","intvolume":"        13","publist_id":"6847","publication":"Journal of Chemical Theory and Computation","quality_controlled":"1","oa_version":"Submitted Version","author":[{"full_name":"Schmalhorst, Philipp S","id":"309D50DA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5795-0133","first_name":"Philipp S","last_name":"Schmalhorst"},{"first_name":"Felix","last_name":"Deluweit","full_name":"Deluweit, Felix"},{"last_name":"Scherrers","first_name":"Roger","full_name":"Scherrers, Roger"},{"first_name":"Carl-Philipp J","last_name":"Heisenberg","orcid":"0000-0002-0912-4566","id":"39427864-F248-11E8-B48F-1D18A9856A87","full_name":"Heisenberg, Carl-Philipp J"},{"full_name":"Sikora, Mateusz K","id":"2F74BCDE-F248-11E8-B48F-1D18A9856A87","first_name":"Mateusz K","last_name":"Sikora"}],"month":"10","issue":"10","language":[{"iso":"eng"}],"acknowledged_ssus":[{"_id":"ScienComp"}],"article_processing_charge":"No","volume":13,"date_created":"2018-12-11T11:48:35Z","type":"journal_article","_id":"804","status":"public","publication_identifier":{"issn":["15499618"]},"main_file_link":[{"url":"https://arxiv.org/abs/1704.03773","open_access":"1"}]},{"type":"journal_article","_id":"807","date_created":"2018-12-11T11:48:36Z","publication_identifier":{"issn":["10222588"]},"status":"public","oa_version":"Published Version","popular_science":"1","author":[{"last_name":"Andrae","first_name":"Magdalena","full_name":"Andrae, Magdalena"},{"first_name":"Márton","last_name":"Villányi","orcid":"0000-0001-8126-0426","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","full_name":"Villányi, Márton"}],"issue":"2","file":[{"file_size":125065,"access_level":"open_access","creator":"dernst","checksum":"558c18bcf5580d87dd371ec626d52075","file_id":"5851","relation":"main_file","file_name":"2017_VOEB_Andrae.pdf","date_updated":"2020-07-14T12:48:09Z","date_created":"2019-01-18T13:39:26Z","content_type":"application/pdf"}],"month":"08","has_accepted_license":"1","volume":70,"language":[{"iso":"eng"}],"oa":1,"day":"01","page":"274 - 280","year":"2017","doi":"10.31263/voebm.v70i2.1898","scopus_import":1,"publication":"Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare","intvolume":"        70","publist_id":"6843","citation":{"ieee":"M. Andrae and M. Villányi, “Der Springer Compact-Deal – Ein erster Einblick in die Evaluierung einer Offsetting-Vereinbarung,” <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>, vol. 70, no. 2. VÖB, pp. 274–280, 2017.","apa":"Andrae, M., &#38; Villányi, M. (2017). Der Springer Compact-Deal – Ein erster Einblick in die Evaluierung einer Offsetting-Vereinbarung. <i>Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare</i>. VÖB. <a href=\"https://doi.org/10.31263/voebm.v70i2.1898\">https://doi.org/10.31263/voebm.v70i2.1898</a>","ista":"Andrae M, Villányi M. 2017. Der Springer Compact-Deal – Ein erster Einblick in die Evaluierung einer Offsetting-Vereinbarung. Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare. 70(2), 274–280.","ama":"Andrae M, Villányi M. Der Springer Compact-Deal – Ein erster Einblick in die Evaluierung einer Offsetting-Vereinbarung. <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>. 2017;70(2):274-280. doi:<a href=\"https://doi.org/10.31263/voebm.v70i2.1898\">10.31263/voebm.v70i2.1898</a>","chicago":"Andrae, Magdalena, and Márton Villányi. “Der Springer Compact-Deal – Ein Erster Einblick in Die Evaluierung Einer Offsetting-Vereinbarung.” <i>Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare</i>. VÖB, 2017. <a href=\"https://doi.org/10.31263/voebm.v70i2.1898\">https://doi.org/10.31263/voebm.v70i2.1898</a>.","mla":"Andrae, Magdalena, and Márton Villányi. “Der Springer Compact-Deal – Ein Erster Einblick in Die Evaluierung Einer Offsetting-Vereinbarung.” <i>Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare</i>, vol. 70, no. 2, VÖB, 2017, pp. 274–80, doi:<a href=\"https://doi.org/10.31263/voebm.v70i2.1898\">10.31263/voebm.v70i2.1898</a>.","short":"M. Andrae, M. Villányi, Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare 70 (2017) 274–280."},"date_updated":"2021-01-12T08:16:45Z","department":[{"_id":"E-Lib"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","ddc":["020"],"abstract":[{"lang":"eng","text":"On January the 1st, 2016 a new agreement between 32 Austrian scientific libraries and the publisher Springer took its effect: this deal covers accessing the licensed content on the one hand, and publishing open access on the other hand. More than 1000 papers by Austrian authors were published open access at Springer in the first year alone. The working group &quot;Springer Compact Evaluierung&quot; made the data for these articles available via the platform OpenAPC and would like to use this opportunity to give a short account of what this publishing agreement actually entails and the working group intends to do."}],"publication_status":"published","title":"Der Springer Compact-Deal – Ein erster Einblick in die Evaluierung einer Offsetting-Vereinbarung","file_date_updated":"2020-07-14T12:48:09Z","date_published":"2017-08-01T00:00:00Z","publisher":"VÖB"},{"month":"03","has_accepted_license":"1","file":[{"success":1,"relation":"main_file","file_size":16034505,"access_level":"open_access","creator":"cziletti","file_id":"8124","checksum":"e5c5a33bcb3ac38ad62df1010ab29040","date_updated":"2020-07-16T12:08:40Z","date_created":"2020-07-16T12:08:40Z","content_type":"application/pdf","file_name":"2017_elife_Podlaski.pdf"}],"article_number":"e22152","language":[{"iso":"eng"}],"article_processing_charge":"No","volume":6,"quality_controlled":"1","oa_version":"Published Version","author":[{"full_name":"Podlaski, William F","last_name":"Podlaski","first_name":"William F"},{"last_name":"Seeholzer","first_name":"Alexander","full_name":"Seeholzer, Alexander"},{"full_name":"Groschner, Lukas N","last_name":"Groschner","first_name":"Lukas N"},{"full_name":"Miesenböck, Gero","last_name":"Miesenböck","first_name":"Gero"},{"full_name":"Ranjan, Rajnish","last_name":"Ranjan","first_name":"Rajnish"},{"orcid":"0000-0003-3295-6181","last_name":"Vogels","first_name":"Tim P","full_name":"Vogels, Tim P","id":"CB6FF8D2-008F-11EA-8E08-2637E6697425"}],"date_created":"2020-06-30T13:32:18Z","type":"journal_article","_id":"8075","article_type":"original","status":"public","publication_identifier":{"issn":["2050-084X"]},"abstract":[{"lang":"eng","text":"Ion channel models are the building blocks of computational neuron models. Their biological fidelity is therefore crucial for the interpretation of simulations. However, the number of published models, and the lack of standardization, make the comparison of ion channel models with one another and with experimental data difficult. Here, we present a framework for the automated large-scale classification of ion channel models. Using annotated metadata and responses to a set of voltage-clamp protocols, we assigned 2378 models of voltage- and calcium-gated ion channels coded in NEURON to 211 clusters. The IonChannelGenealogy (ICGenealogy) web interface provides an interactive resource for the categorization of new and existing models and experimental recordings. It enables quantitative comparisons of simulated and/or measured ion channel kinetics, and facilitates field-wide standardization of experimentally-constrained modeling."}],"publication_status":"published","ddc":["570"],"publisher":"eLife Sciences Publications, Ltd","file_date_updated":"2020-07-16T12:08:40Z","date_published":"2017-03-06T00:00:00Z","pmid":1,"title":"Mapping the function of neuronal ion channels in model and experiment","date_updated":"2021-01-12T08:16:46Z","extern":"1","citation":{"ieee":"W. F. Podlaski, A. Seeholzer, L. N. Groschner, G. Miesenböck, R. Ranjan, and T. P. Vogels, “Mapping the function of neuronal ion channels in model and experiment,” <i>eLife</i>, vol. 6. eLife Sciences Publications, Ltd, 2017.","apa":"Podlaski, W. F., Seeholzer, A., Groschner, L. N., Miesenböck, G., Ranjan, R., &#38; Vogels, T. P. (2017). Mapping the function of neuronal ion channels in model and experiment. <i>ELife</i>. eLife Sciences Publications, Ltd. <a href=\"https://doi.org/10.7554/elife.22152\">https://doi.org/10.7554/elife.22152</a>","ama":"Podlaski WF, Seeholzer A, Groschner LN, Miesenböck G, Ranjan R, Vogels TP. Mapping the function of neuronal ion channels in model and experiment. <i>eLife</i>. 2017;6. doi:<a href=\"https://doi.org/10.7554/elife.22152\">10.7554/elife.22152</a>","ista":"Podlaski WF, Seeholzer A, Groschner LN, Miesenböck G, Ranjan R, Vogels TP. 2017. Mapping the function of neuronal ion channels in model and experiment. eLife. 6, e22152.","chicago":"Podlaski, William F, Alexander Seeholzer, Lukas N Groschner, Gero Miesenböck, Rajnish Ranjan, and Tim P Vogels. “Mapping the Function of Neuronal Ion Channels in Model and Experiment.” <i>ELife</i>. eLife Sciences Publications, Ltd, 2017. <a href=\"https://doi.org/10.7554/elife.22152\">https://doi.org/10.7554/elife.22152</a>.","mla":"Podlaski, William F., et al. “Mapping the Function of Neuronal Ion Channels in Model and Experiment.” <i>ELife</i>, vol. 6, e22152, eLife Sciences Publications, Ltd, 2017, doi:<a href=\"https://doi.org/10.7554/elife.22152\">10.7554/elife.22152</a>.","short":"W.F. Podlaski, A. Seeholzer, L.N. Groschner, G. Miesenböck, R. Ranjan, T.P. Vogels, ELife 6 (2017)."},"user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"external_id":{"pmid":["28267430"]},"intvolume":"         6","publication":"eLife","oa":1,"day":"06","year":"2017","doi":"10.7554/elife.22152"},{"citation":{"short":"R.P. Costa, Y.M. Assael, B. Shillingford, N. de Freitas, T.P. Vogels, in:, Advances in Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2017, pp. 272–283.","mla":"Costa, Rui Ponte, et al. “Cortical Microcircuits as Gated-Recurrent Neural Networks.” <i>Advances in Neural Information Processing Systems</i>, vol. 30, Neural Information Processing Systems Foundation, 2017, pp. 272–83.","ama":"Costa RP, Assael YM, Shillingford B, Freitas N de, Vogels TP. Cortical microcircuits as gated-recurrent neural networks. In: <i>Advances in Neural Information Processing Systems</i>. Vol 30. Neural Information Processing Systems Foundation; 2017:272-283.","chicago":"Costa, Rui Ponte, Yannis M. Assael, Brendan Shillingford, Nando de Freitas, and Tim P Vogels. “Cortical Microcircuits as Gated-Recurrent Neural Networks.” In <i>Advances in Neural Information Processing Systems</i>, 30:272–83. Neural Information Processing Systems Foundation, 2017.","ista":"Costa RP, Assael YM, Shillingford B, Freitas N de, Vogels TP. 2017. Cortical microcircuits as gated-recurrent neural networks. Advances in Neural Information Processing Systems. NIPS: Neural Information Processing System vol. 30, 272–283.","apa":"Costa, R. P., Assael, Y. M., Shillingford, B., Freitas, N. de, &#38; Vogels, T. P. (2017). Cortical microcircuits as gated-recurrent neural networks. In <i>Advances in Neural Information Processing Systems</i> (Vol. 30, pp. 272–283). Long Beach, CA, United States: Neural Information Processing Systems Foundation.","ieee":"R. P. Costa, Y. M. Assael, B. Shillingford, N. de Freitas, and T. P. Vogels, “Cortical microcircuits as gated-recurrent neural networks,” in <i>Advances in Neural Information Processing Systems</i>, Long Beach, CA, United States, 2017, vol. 30, pp. 272–283."},"extern":"1","date_updated":"2021-01-12T08:17:03Z","external_id":{"arxiv":["1711.02448"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","abstract":[{"text":"Cortical circuits exhibit intricate recurrent architectures that are remarkably similar across different brain areas. Such stereotyped structure suggests the existence of common computational principles. However, such principles have remained largely elusive. Inspired by gated-memory networks, namely long short-term memory networks (LSTMs), we introduce a recurrent neural network in which information is gated through inhibitory cells that are subtractive (subLSTM). We propose a natural mapping of subLSTMs onto known canonical excitatory-inhibitory cortical microcircuits. Our empirical evaluation across sequential image classification and language modelling tasks shows that subLSTM units can achieve similar performance to LSTM units. These results suggest that cortical circuits can be optimised to solve complex contextual problems and proposes a novel view on their computational function.\r\nOverall our work provides a step towards unifying recurrent networks as used in machine learning with their biological counterparts.","lang":"eng"}],"title":"Cortical microcircuits as gated-recurrent neural networks","publisher":"Neural Information Processing Systems Foundation","date_published":"2017-12-01T00:00:00Z","oa":1,"day":"01","page":"272-283","year":"2017","publication":"Advances in Neural Information Processing Systems","arxiv":1,"intvolume":"        30","oa_version":"Preprint","quality_controlled":"1","author":[{"first_name":"Rui Ponte","last_name":"Costa","full_name":"Costa, Rui Ponte"},{"full_name":"Assael, Yannis M.","last_name":"Assael","first_name":"Yannis M."},{"first_name":"Brendan","last_name":"Shillingford","full_name":"Shillingford, Brendan"},{"last_name":"Freitas","first_name":"Nando de","full_name":"Freitas, Nando de"},{"first_name":"Tim P","last_name":"Vogels","orcid":"0000-0003-3295-6181","id":"CB6FF8D2-008F-11EA-8E08-2637E6697425","full_name":"Vogels, Tim P"}],"month":"12","volume":30,"article_processing_charge":"No","language":[{"iso":"eng"}],"_id":"8129","type":"conference","date_created":"2020-07-16T19:13:10Z","status":"public","publication_identifier":{"issn":["10495258"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1711.02448"}],"conference":{"end_date":"2017-12-09","start_date":"2017-12-04","location":"Long Beach, CA, United States","name":"NIPS: Neural Information Processing System"}}]