[{"department":[{"_id":"JoDa"},{"_id":"SaSi"},{"_id":"GaNo"},{"_id":"PeJo"},{"_id":"Bio"},{"_id":"RySh"}],"title":"Research data for the publication \"Imaging brain tissue architecture across millimeter to nanometer scales\"","publisher":"Institute of Science and Technology Austria","date_created":"2023-06-07T07:15:12Z","ec_funded":1,"oa_version":"Published Version","abstract":[{"text":"Mapping the complex and dense arrangement of cells and their connectivity in brain tissue demands nanoscale spatial resolution imaging. Super-resolution optical microscopy excels at visualizing specific molecules and individual cells but fails to provide tissue context. Here, we developed Comprehensive Analysis of Tissues across Scales (CATS), a technology to densely map brain tissue architecture from millimeter regional to nanometer synaptic scales in diverse chemically fixed brain preparations, including rodent and human. CATS uses fixation-compatible extracellular labeling and optical imaging, including stimulated emission depletion or expansion microscopy, to comprehensively delineate cellular structures. It enables three-dimensional reconstruction of single synapses and mapping of synaptic connectivity by identification and analysis of putative synaptic cleft regions. Applying CATS to the mouse hippocampal mossy fiber circuitry, we reconstructed and quantified the synaptic input and output structure of identified neurons. We furthermore demonstrate applicability to clinically derived human tissue samples, including formalin-fixed paraffin-embedded routine diagnostic specimens, for visualizing the cellular architecture of brain tissue in health and disease.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"research_data","contributor":[{"id":"443DB6DE-F248-11E8-B48F-1D18A9856A87","last_name":"Michalska","first_name":"Julia M"},{"first_name":"Julia","last_name":"Lyudchik","id":"46E28B80-F248-11E8-B48F-1D18A9856A87"},{"id":"39BDC62C-F248-11E8-B48F-1D18A9856A87","last_name":"Velicky","orcid":"0000-0002-2340-7431","first_name":"Philipp"},{"first_name":"Hana","last_name":"Stefanickova","id":"ee3cb6ca-ec98-11ea-ae11-ff703e2254ed"},{"id":"63836096-4690-11EA-BD4E-32803DDC885E","last_name":"Watson","orcid":"0000-0002-8698-3823","first_name":"Jake"},{"first_name":"Alban","last_name":"Cenameri","id":"9ac8f577-2357-11eb-997a-e566c5550886"},{"id":"4DF26D8C-F248-11E8-B48F-1D18A9856A87","last_name":"Sommer","orcid":"0000-0003-1216-9105","first_name":"Christoph M"},{"id":"4CD6AAC6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-3183-8207","last_name":"Amberg","first_name":"Nicole"},{"orcid":"0000-0003-2356-9403","last_name":"Venturino","first_name":"Alessandro","id":"41CB84B2-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Karl","last_name":"Roessler"},{"last_name":"Czech","first_name":"Thomas"},{"first_name":"Romana","last_name":"Höftberger"},{"last_name":"Siegert","orcid":"0000-0001-8635-0877","first_name":"Sandra","id":"36ACD32E-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Gaia","last_name":"Novarino","orcid":"0000-0002-7673-7178","id":"3E57A680-F248-11E8-B48F-1D18A9856A87"},{"id":"353C1B58-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5001-4804","last_name":"Jonas","first_name":"Peter M"}],"_id":"13126","has_accepted_license":"1","year":"2023","acknowledgement":"We thank Jakob Vorlaufer, Nathalie Agudelo-Dueñas, Wiebke Jahr, Andreas Wartak for microscope maintenance and troubleshooting, Caroline Kreuzinger, Anna Freeman, and Irene Erber for technical assistance and Matthias Tomschik for support with obtaining human samples. We gratefully acknowledge Eder Miguel for setting up webKnossos and Marek Šuplata for computational support and hardware control. We are grateful to Ryuichi Shigemoto and Bernd Bickel for generous support, and Michael Sixt and Scott Boyd (Stanford University) for discussions and critical reading of the manuscript. PSD95-HaloTag mice were kindly provided by Seth Grant (University of Edinburgh). We acknowledge expert support by IST Austria’s scientific computing, imaging and optics, preclinical, and lab support facilities, and by the Library and Miba machine shop.\r\nWe gratefully acknowledge funding by the following sources: \r\nAustrian Science Fund (FWF) grant I3600-B27 (JGD)\r\nAustrian Science Fund (FWF) grant DK W1232 (JGD, JMM)\r\nAustrian Science Fund (FWF) grant Z 312-B27, Wittgenstein award (PJ)\r\nAustrian Science Funds (FWF) projects I4685-B, I6565-B (SYNABS) and DOC 33-B27 (RH)\r\nGesellschaft für Forschungsförderung NÖ (NFB) grant LSC18-022 (JGD)\r\nEuropean Union’s Horizon 2020 research and innovation programme, European Research Council (ERC) grant 715508 – REVERSEAUTISM (GN)\r\nEuropean Union’s Horizon 2020 research and innovation programme, European Research Council (ERC) grant 692692 – GIANTSYN (PJ)\r\nMarie Skłodowska-Curie Actions Fellowship GA no. 665385 under the EU Horizon 2020 program (JMM, JL)\r\nMarie Skłodowska-Curie Actions Individual Fellowship 101026635 under the EU Horizon 2020 program (JFW)","status":"public","oa":1,"citation":{"chicago":"Danzl, Johann G. “Research Data for the Publication ‘Imaging Brain Tissue Architecture across Millimeter to Nanometer Scales.’” Institute of Science and Technology Austria, 2023. <a href=\"https://doi.org/10.15479/AT:ISTA:13126\">https://doi.org/10.15479/AT:ISTA:13126</a>.","ieee":"J. G. Danzl, “Research data for the publication ‘Imaging brain tissue architecture across millimeter to nanometer scales.’” Institute of Science and Technology Austria, 2023.","apa":"Danzl, J. G. (2023). Research data for the publication “Imaging brain tissue architecture across millimeter to nanometer scales.” Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:13126\">https://doi.org/10.15479/AT:ISTA:13126</a>","ama":"Danzl JG. Research data for the publication “Imaging brain tissue architecture across millimeter to nanometer scales.” 2023. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:13126\">10.15479/AT:ISTA:13126</a>","short":"J.G. Danzl, (2023).","mla":"Danzl, Johann G. <i>Research Data for the Publication “Imaging Brain Tissue Architecture across Millimeter to Nanometer Scales.”</i> Institute of Science and Technology Austria, 2023, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:13126\">10.15479/AT:ISTA:13126</a>.","ista":"Danzl JG. 2023. Research data for the publication ‘Imaging brain tissue architecture across millimeter to nanometer scales’, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:13126\">10.15479/AT:ISTA:13126</a>."},"file_date_updated":"2023-08-04T13:19:47Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","short":"CC BY-NC-SA (4.0)","image":"/images/cc_by_nc_sa.png"},"acknowledged_ssus":[{"_id":"ScienComp"},{"_id":"Bio"},{"_id":"PreCl"},{"_id":"LifeSc"},{"_id":"M-Shop"},{"_id":"E-Lib"}],"date_published":"2023-08-04T00:00:00Z","author":[{"last_name":"Danzl","orcid":"0000-0001-8559-3973","first_name":"Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","full_name":"Danzl, Johann G"}],"article_processing_charge":"No","date_updated":"2024-02-21T12:18:19Z","related_material":{"link":[{"url":"https://pub.ista.ac.at/group_danzl/data/CATS/","description":"Original data for Fig. 5d, Fig. 5d (N2V) and Fig. 5f-i, provided via an external link due to the large size (>10GB) of the datasets. 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Using garden ants and fungal pathogens as an experimental model, we derive the rules governing individual ant grooming choices and show how they produce colony-level hygiene. Time-resolved behavioral analysis, pathogen quantification, and probabilistic modeling reveal that ants increase grooming and preferentially target highly-infectious individuals when perceiving high pathogen load, but transiently suppress grooming after having been groomed by nestmates. Ants thus react to both, the infectivity of others and the social feedback they receive on their own contagiousness. While inferred solely from momentary ant decisions, these behavioral rules quantitatively predict hour-long experimental dynamics, and synergistically combine into efficient colony-wide pathogen removal. Our analyses show that noisy individual decisions based on only local, incomplete, yet dynamically-updated information on pathogen threat and social feedback can lead to potent collective disease defense."}],"title":"Dynamic pathogen detection and social feedback shape collective hygiene in ants","department":[{"_id":"SyCr"},{"_id":"GaTk"}],"publication":"Nature Communications","publisher":"Springer Nature","oa_version":"Published Version","ec_funded":1,"date_created":"2023-06-11T22:00:40Z","acknowledgement":"We thank Mike Bidochka for the fungal strains, the ISTA Social Immunity Team for ant collection, Hanna Leitner for experimental and molecular support, Jennifer Robb and Lukas Lindorfer for microscopy, and the LabSupport Facility at ISTA for general laboratory support. We further thank Victor Mireles, Iain Couzin, Fabian Theis and the Social Immunity Team for continued feedback throughout, and Michael Sixt, Yuko Ulrich, Koos Boomsma, Erika Dawson, Megan Kutzer and Hinrich Schulenburg for comments on the manuscript. This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (Grant No. 771402; EPIDEMICSonCHIP) to SC, from the Scientific Grant Agency of the Slovak Republic (Grant No. 1/0521/20) to KB, and the Human Frontier Science Program (Grant No. RGP0065/2012) to GT.","oa":1,"status":"public","external_id":{"isi":["001002562700005"],"pmid":["37270641"]},"article_type":"original","citation":{"mla":"Casillas Perez, Barbara E., et al. “Dynamic Pathogen Detection and Social Feedback Shape Collective Hygiene in Ants.” <i>Nature Communications</i>, vol. 14, 3232, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1038/s41467-023-38947-y\">10.1038/s41467-023-38947-y</a>.","short":"B.E. Casillas Perez, K. Bodova, A.V. Grasse, G. Tkačik, S. Cremer, Nature Communications 14 (2023).","ista":"Casillas Perez BE, Bodova K, Grasse AV, Tkačik G, Cremer S. 2023. Dynamic pathogen detection and social feedback shape collective hygiene in ants. Nature Communications. 14, 3232.","ama":"Casillas Perez BE, Bodova K, Grasse AV, Tkačik G, Cremer S. Dynamic pathogen detection and social feedback shape collective hygiene in ants. <i>Nature Communications</i>. 2023;14. doi:<a href=\"https://doi.org/10.1038/s41467-023-38947-y\">10.1038/s41467-023-38947-y</a>","apa":"Casillas Perez, B. E., Bodova, K., Grasse, A. V., Tkačik, G., &#38; Cremer, S. (2023). Dynamic pathogen detection and social feedback shape collective hygiene in ants. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-023-38947-y\">https://doi.org/10.1038/s41467-023-38947-y</a>","chicago":"Casillas Perez, Barbara E, Katarina Bodova, Anna V Grasse, Gašper Tkačik, and Sylvia Cremer. “Dynamic Pathogen Detection and Social Feedback Shape Collective Hygiene in Ants.” <i>Nature Communications</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s41467-023-38947-y\">https://doi.org/10.1038/s41467-023-38947-y</a>.","ieee":"B. E. Casillas Perez, K. Bodova, A. V. Grasse, G. Tkačik, and S. Cremer, “Dynamic pathogen detection and social feedback shape collective hygiene in ants,” <i>Nature Communications</i>, vol. 14. Springer Nature, 2023."},"publication_identifier":{"eissn":["2041-1723"]},"volume":14,"type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13127","year":"2023","has_accepted_license":"1"},{"arxiv":1,"abstract":[{"text":"Given  A⊆GL2(Fq), we prove that there exist disjoint subsets  B,C⊆A such that  A=B⊔C and their additive and multiplicative energies satisfying max{E+(B),E×(C)}≪|A|3/M(|A|), where\r\nM(|A|)=min{q4/3/|A|1/3(log|A|)2/3,|A|4/5/q13/5(log|A|)27/10}.\r\n We also study some related questions on moderate expanders over matrix rings, namely, for  A,B,C⊆GL2(Fq), we have |AB+C|, |(A+B)C|≫q4, whenever  |A||B||C|≫q10+1/2. These improve earlier results due to Karabulut, Koh, Pham, Shen, and Vinh ([2019], Expanding phenomena over matrix rings,  ForumMath., 31, 951–970).\r\n","lang":"eng"}],"publisher":"Cambridge University Press","publication":"Canadian Mathematical Bulletin","title":"An energy decomposition theorem for matrices and related questions","department":[{"_id":"GradSch"}],"date_created":"2023-06-11T22:00:40Z","oa_version":"Preprint","issue":"4","article_type":"original","external_id":{"isi":["001011963000001"],"arxiv":["2106.07328"]},"oa":1,"status":"public","publication_identifier":{"issn":["0008-4395"],"eissn":["1496-4287"]},"citation":{"apa":"Mohammadi, A., Pham, T., &#38; Wang, Y. (2023). An energy decomposition theorem for matrices and related questions. <i>Canadian Mathematical Bulletin</i>. Cambridge University Press. <a href=\"https://doi.org/10.4153/S000843952300036X\">https://doi.org/10.4153/S000843952300036X</a>","chicago":"Mohammadi, Ali, Thang Pham, and Yiting Wang. “An Energy Decomposition Theorem for Matrices and Related Questions.” <i>Canadian Mathematical Bulletin</i>. Cambridge University Press, 2023. <a href=\"https://doi.org/10.4153/S000843952300036X\">https://doi.org/10.4153/S000843952300036X</a>.","ieee":"A. Mohammadi, T. Pham, and Y. Wang, “An energy decomposition theorem for matrices and related questions,” <i>Canadian Mathematical Bulletin</i>, vol. 66, no. 4. Cambridge University Press, pp. 1280–1295, 2023.","mla":"Mohammadi, Ali, et al. “An Energy Decomposition Theorem for Matrices and Related Questions.” <i>Canadian Mathematical Bulletin</i>, vol. 66, no. 4, Cambridge University Press, 2023, pp. 1280–95, doi:<a href=\"https://doi.org/10.4153/S000843952300036X\">10.4153/S000843952300036X</a>.","ista":"Mohammadi A, Pham T, Wang Y. 2023. An energy decomposition theorem for matrices and related questions. Canadian Mathematical Bulletin. 66(4), 1280–1295.","short":"A. Mohammadi, T. Pham, Y. Wang, Canadian Mathematical Bulletin 66 (2023) 1280–1295.","ama":"Mohammadi A, Pham T, Wang Y. An energy decomposition theorem for matrices and related questions. <i>Canadian Mathematical Bulletin</i>. 2023;66(4):1280-1295. doi:<a href=\"https://doi.org/10.4153/S000843952300036X\">10.4153/S000843952300036X</a>"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","volume":66,"page":"1280-1295","year":"2023","_id":"13128","article_processing_charge":"No","doi":"10.4153/S000843952300036X","date_updated":"2024-01-29T11:00:46Z","date_published":"2023-12-01T00:00:00Z","author":[{"full_name":"Mohammadi, Ali","first_name":"Ali","last_name":"Mohammadi"},{"first_name":"Thang","last_name":"Pham","full_name":"Pham, Thang"},{"first_name":"Yiting","orcid":"0000-0002-2856-767X","last_name":"Wang","full_name":"Wang, Yiting","id":"1917d194-076e-11ed-97cd-837255f88785"}],"quality_controlled":"1","scopus_import":"1","day":"01","month":"12","isi":1,"language":[{"iso":"eng"}],"publication_status":"published","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2106.07328"}],"intvolume":"        66"},{"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","type":"journal_article","_id":"13129","year":"2023","has_accepted_license":"1","oa":1,"status":"public","acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria).","article_type":"original","external_id":{"isi":["000999623100001"]},"citation":{"chicago":"Clozeau, Nicolas, Marc Josien, Felix Otto, and Qiang Xu. “Bias in the Representative Volume Element Method: Periodize the Ensemble Instead of Its Realizations.” <i>Foundations of Computational Mathematics</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s10208-023-09613-y\">https://doi.org/10.1007/s10208-023-09613-y</a>.","ieee":"N. Clozeau, M. Josien, F. Otto, and Q. Xu, “Bias in the representative volume element method: Periodize the ensemble instead of its realizations,” <i>Foundations of Computational Mathematics</i>. Springer Nature, 2023.","apa":"Clozeau, N., Josien, M., Otto, F., &#38; Xu, Q. (2023). Bias in the representative volume element method: Periodize the ensemble instead of its realizations. <i>Foundations of Computational Mathematics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10208-023-09613-y\">https://doi.org/10.1007/s10208-023-09613-y</a>","ama":"Clozeau N, Josien M, Otto F, Xu Q. Bias in the representative volume element method: Periodize the ensemble instead of its realizations. <i>Foundations of Computational Mathematics</i>. 2023. doi:<a href=\"https://doi.org/10.1007/s10208-023-09613-y\">10.1007/s10208-023-09613-y</a>","ista":"Clozeau N, Josien M, Otto F, Xu Q. 2023. Bias in the representative volume element method: Periodize the ensemble instead of its realizations. Foundations of Computational Mathematics.","mla":"Clozeau, Nicolas, et al. “Bias in the Representative Volume Element Method: Periodize the Ensemble Instead of Its Realizations.” <i>Foundations of Computational Mathematics</i>, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1007/s10208-023-09613-y\">10.1007/s10208-023-09613-y</a>.","short":"N. Clozeau, M. Josien, F. Otto, Q. Xu, Foundations of Computational Mathematics (2023)."},"publication_identifier":{"issn":["1615-3375"],"eissn":["1615-3383"]},"publication":"Foundations of Computational Mathematics","title":"Bias in the representative volume element method: Periodize the ensemble instead of its realizations","department":[{"_id":"JuFi"}],"publisher":"Springer Nature","date_created":"2023-06-11T22:00:40Z","oa_version":"Published Version","abstract":[{"lang":"eng","text":"We study the representative volume element (RVE) method, which is a method to approximately infer the effective behavior ahom of a stationary random medium. The latter is described by a coefficient field a(x) generated from a given ensemble ⟨⋅⟩ and the corresponding linear elliptic operator −∇⋅a∇. In line with the theory of homogenization, the method proceeds by computing d=3 correctors (d denoting the space dimension). To be numerically tractable, this computation has to be done on a finite domain: the so-called representative volume element, i.e., a large box with, say, periodic boundary conditions. The main message of this article is: Periodize the ensemble instead of its realizations. By this, we mean that it is better to sample from a suitably periodized ensemble than to periodically extend the restriction of a realization a(x) from the whole-space ensemble ⟨⋅⟩. We make this point by investigating the bias (or systematic error), i.e., the difference between ahom and the expected value of the RVE method, in terms of its scaling w.r.t. the lateral size L of the box. In case of periodizing a(x), we heuristically argue that this error is generically O(L−1). In case of a suitable periodization of ⟨⋅⟩\r\n, we rigorously show that it is O(L−d). In fact, we give a characterization of the leading-order error term for both strategies and argue that even in the isotropic case it is generically non-degenerate. We carry out the rigorous analysis in the convenient setting of ensembles ⟨⋅⟩\r\n of Gaussian type, which allow for a straightforward periodization, passing via the (integrable) covariance function. This setting has also the advantage of making the Price theorem and the Malliavin calculus available for optimal stochastic estimates of correctors. We actually need control of second-order correctors to capture the leading-order error term. This is due to inversion symmetry when applying the two-scale expansion to the Green function. As a bonus, we present a stream-lined strategy to estimate the error in a higher-order two-scale expansion of the Green function."}],"main_file_link":[{"url":"https://doi.org/10.1007/s10208-023-09613-y","open_access":"1"}],"publication_status":"epub_ahead","ddc":["510"],"day":"30","month":"05","isi":1,"language":[{"iso":"eng"}],"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"author":[{"id":"fea1b376-906f-11eb-847d-b2c0cf46455b","full_name":"Clozeau, Nicolas","last_name":"Clozeau","first_name":"Nicolas"},{"full_name":"Josien, Marc","last_name":"Josien","first_name":"Marc"},{"full_name":"Otto, Felix","last_name":"Otto","first_name":"Felix"},{"first_name":"Qiang","last_name":"Xu","full_name":"Xu, Qiang"}],"date_published":"2023-05-30T00:00:00Z","article_processing_charge":"Yes (via OA deal)","doi":"10.1007/s10208-023-09613-y","date_updated":"2023-08-02T06:12:39Z","scopus_import":"1","quality_controlled":"1"},{"volume":368,"page":"247-300","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","_id":"13135","has_accepted_license":"1","year":"2023","oa":1,"status":"public","acknowledgement":"The first author has received funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No. 948819) Image 1. The second author is supported by the VICI subsidy VI.C.212.027 of the Netherlands Organisation for Scientific Research (NWO).","issue":"9","article_type":"original","external_id":{"isi":["001019018700001"]},"citation":{"apa":"Agresti, A., &#38; Veraar, M. (2023). Reaction-diffusion equations with transport noise and critical superlinear diffusion: Local well-posedness and positivity. <i>Journal of Differential Equations</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jde.2023.05.038\">https://doi.org/10.1016/j.jde.2023.05.038</a>","chicago":"Agresti, Antonio, and Mark Veraar. “Reaction-Diffusion Equations with Transport Noise and Critical Superlinear Diffusion: Local Well-Posedness and Positivity.” <i>Journal of Differential Equations</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.jde.2023.05.038\">https://doi.org/10.1016/j.jde.2023.05.038</a>.","ieee":"A. Agresti and M. Veraar, “Reaction-diffusion equations with transport noise and critical superlinear diffusion: Local well-posedness and positivity,” <i>Journal of Differential Equations</i>, vol. 368, no. 9. Elsevier, pp. 247–300, 2023.","short":"A. Agresti, M. Veraar, Journal of Differential Equations 368 (2023) 247–300.","ista":"Agresti A, Veraar M. 2023. Reaction-diffusion equations with transport noise and critical superlinear diffusion: Local well-posedness and positivity. Journal of Differential Equations. 368(9), 247–300.","mla":"Agresti, Antonio, and Mark Veraar. “Reaction-Diffusion Equations with Transport Noise and Critical Superlinear Diffusion: Local Well-Posedness and Positivity.” <i>Journal of Differential Equations</i>, vol. 368, no. 9, Elsevier, 2023, pp. 247–300, doi:<a href=\"https://doi.org/10.1016/j.jde.2023.05.038\">10.1016/j.jde.2023.05.038</a>.","ama":"Agresti A, Veraar M. Reaction-diffusion equations with transport noise and critical superlinear diffusion: Local well-posedness and positivity. <i>Journal of Differential Equations</i>. 2023;368(9):247-300. doi:<a href=\"https://doi.org/10.1016/j.jde.2023.05.038\">10.1016/j.jde.2023.05.038</a>"},"publication_identifier":{"issn":["0022-0396"],"eissn":["1090-2732"]},"publication":"Journal of Differential Equations","department":[{"_id":"JuFi"}],"title":"Reaction-diffusion equations with transport noise and critical superlinear diffusion: Local well-posedness and positivity","publisher":"Elsevier","date_created":"2023-06-18T22:00:45Z","ec_funded":1,"oa_version":"Published Version","abstract":[{"text":"In this paper we consider a class of stochastic reaction-diffusion equations. We provide local well-posedness, regularity, blow-up criteria and positivity of solutions. The key novelties of this work are related to the use transport noise, critical spaces and the proof of higher order regularity of solutions – even in case of non-smooth initial data. Crucial tools are Lp(Lp)-theory, maximal regularity estimates and sharp blow-up criteria. We view the results of this paper as a general toolbox for establishing global well-posedness for a large class of reaction-diffusion systems of practical interest, of which many are completely open. In our follow-up work [8], the results of this paper are applied in the specific cases of the Lotka-Volterra equations and the Brusselator model.","lang":"eng"}],"intvolume":"       368","file":[{"file_size":834638,"checksum":"246b703b091dfe047bfc79abf0891a63","file_name":"2023_JourDifferentialEquations_Agresti.pdf","date_updated":"2024-01-29T11:03:09Z","file_id":"14895","content_type":"application/pdf","date_created":"2024-01-29T11:03:09Z","success":1,"relation":"main_file","access_level":"open_access","creator":"dernst"}],"publication_status":"published","ddc":["510"],"day":"25","isi":1,"month":"09","project":[{"name":"Bridging Scales in Random Materials","grant_number":"948819","_id":"0aa76401-070f-11eb-9043-b5bb049fa26d","call_identifier":"H2020"}],"language":[{"iso":"eng"}],"file_date_updated":"2024-01-29T11:03:09Z","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"date_published":"2023-09-25T00:00:00Z","author":[{"orcid":"0000-0002-9573-2962","last_name":"Agresti","first_name":"Antonio","id":"673cd0cc-9b9a-11eb-b144-88f30e1fbb72","full_name":"Agresti, Antonio"},{"last_name":"Veraar","first_name":"Mark","full_name":"Veraar, Mark"}],"article_processing_charge":"Yes (in subscription journal)","doi":"10.1016/j.jde.2023.05.038","date_updated":"2024-01-29T11:04:41Z","scopus_import":"1","quality_controlled":"1"},{"scopus_import":"1","quality_controlled":"1","date_published":"2023-09-01T00:00:00Z","author":[{"first_name":"Thomas","last_name":"Minchington","full_name":"Minchington, Thomas","id":"7d1648cb-19e9-11eb-8e7a-f8c037fb3e3f"},{"orcid":"0000-0001-8703-1093","last_name":"Rus","first_name":"Stefanie","id":"4D9EC9B6-F248-11E8-B48F-1D18A9856A87","full_name":"Rus, Stefanie"},{"id":"3959A2A0-F248-11E8-B48F-1D18A9856A87","full_name":"Kicheva, Anna","orcid":"0000-0003-4509-4998","last_name":"Kicheva","first_name":"Anna"}],"doi":"10.1016/j.coisb.2023.100459","date_updated":"2024-01-29T11:07:47Z","article_processing_charge":"Yes (via OA deal)","tmp":{"short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"file_date_updated":"2024-01-29T11:06:45Z","article_number":"100459","project":[{"grant_number":"101044579","name":"Mechanisms of tissue size regulation in spinal cord development","_id":"bd7e737f-d553-11ed-ba76-d69ffb5ee3aa"},{"_id":"059DF620-7A3F-11EA-A408-12923DDC885E","grant_number":"F07802","name":"Morphogen control of growth and pattern in the spinal cord"},{"name":"The regulatory logic of pattern formation in the vertebrate dorsal neural tube","grant_number":"SC19-011","_id":"9B9B39FA-BA93-11EA-9121-9846C619BF3A"}],"language":[{"iso":"eng"}],"month":"09","day":"01","ddc":["570"],"intvolume":"        35","publication_status":"published","file":[{"date_updated":"2024-01-29T11:06:45Z","file_id":"14896","file_name":"2023_CurrOpSystBioloy_Minchington.pdf","checksum":"8a75c4e29fd9b62e3c50663c2265b173","file_size":598842,"access_level":"open_access","creator":"dernst","relation":"main_file","success":1,"date_created":"2024-01-29T11:06:45Z","content_type":"application/pdf"}],"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","abstract":[{"text":"Despite its fundamental importance for development, the question of how organs achieve their correct size and shape is poorly understood. This complex process requires coordination between the generation of cell mass and the morphogenetic mechanisms that sculpt tissues. These processes are regulated by morphogen signalling pathways and mechanical forces. Yet, in many systems, it is unclear how biochemical and mechanical signalling are quantitatively interpreted to determine the behaviours of individual cells and how they contribute to growth and morphogenesis at the tissue scale. In this review, we discuss the development of the vertebrate neural tube and somites as an example of the state of knowledge, as well as the challenges in understanding the mechanisms of tissue size control in vertebrate organogenesis. We highlight how the recent advances in stem cell differentiation and organoid approaches can be harnessed to provide new insights into this question.","lang":"eng"}],"oa_version":"Published Version","date_created":"2023-06-18T22:00:46Z","department":[{"_id":"AnKi"}],"title":"Control of tissue dimensions in the developing neural tube and somites","publication":"Current Opinion in Systems Biology","publisher":"Elsevier","citation":{"chicago":"Minchington, Thomas, Stefanie Rus, and Anna Kicheva. “Control of Tissue Dimensions in the Developing Neural Tube and Somites.” <i>Current Opinion in Systems Biology</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.coisb.2023.100459\">https://doi.org/10.1016/j.coisb.2023.100459</a>.","ieee":"T. Minchington, S. Rus, and A. Kicheva, “Control of tissue dimensions in the developing neural tube and somites,” <i>Current Opinion in Systems Biology</i>, vol. 35. Elsevier, 2023.","apa":"Minchington, T., Rus, S., &#38; Kicheva, A. (2023). Control of tissue dimensions in the developing neural tube and somites. <i>Current Opinion in Systems Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.coisb.2023.100459\">https://doi.org/10.1016/j.coisb.2023.100459</a>","ama":"Minchington T, Rus S, Kicheva A. Control of tissue dimensions in the developing neural tube and somites. <i>Current Opinion in Systems Biology</i>. 2023;35. doi:<a href=\"https://doi.org/10.1016/j.coisb.2023.100459\">10.1016/j.coisb.2023.100459</a>","ista":"Minchington T, Rus S, Kicheva A. 2023. Control of tissue dimensions in the developing neural tube and somites. Current Opinion in Systems Biology. 35, 100459.","mla":"Minchington, Thomas, et al. “Control of Tissue Dimensions in the Developing Neural Tube and Somites.” <i>Current Opinion in Systems Biology</i>, vol. 35, 100459, Elsevier, 2023, doi:<a href=\"https://doi.org/10.1016/j.coisb.2023.100459\">10.1016/j.coisb.2023.100459</a>.","short":"T. Minchington, S. Rus, A. Kicheva, Current Opinion in Systems Biology 35 (2023)."},"publication_identifier":{"eissn":["2452-3100"]},"status":"public","acknowledgement":"We thank J. Briscoe for comments on the manuscript. Work in the AK lab is supported by ISTA, the European Research Council under Horizon Europe: grant 101044579, and Austrian Science Fund (FWF): F78 (Stem Cell Modulation). SR is supported by Gesellschaft für Forschungsförderung Niederösterreich m.b.H. fellowship SC19-011.","oa":1,"article_type":"original","_id":"13136","year":"2023","has_accepted_license":"1","volume":35,"type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"quality_controlled":"1","scopus_import":"1","doi":"10.1103/PhysRevB.107.184312","date_updated":"2023-08-02T06:16:02Z","article_processing_charge":"No","author":[{"full_name":"Orlov, Pavel","last_name":"Orlov","first_name":"Pavel"},{"last_name":"Tiutiakina","first_name":"Anastasiia","full_name":"Tiutiakina, Anastasiia"},{"first_name":"Rustem","last_name":"Sharipov","full_name":"Sharipov, Rustem"},{"first_name":"Elena","last_name":"Petrova","full_name":"Petrova, Elena","id":"0ac84990-897b-11ed-a09c-f5abb56a4ede"},{"full_name":"Gritsev, Vladimir","first_name":"Vladimir","last_name":"Gritsev"},{"full_name":"Kurlov, Denis V.","first_name":"Denis V.","last_name":"Kurlov"}],"date_published":"2023-05-01T00:00:00Z","article_number":"184312","language":[{"iso":"eng"}],"isi":1,"month":"05","day":"01","publication_status":"published","intvolume":"       107","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2303.00729"}],"abstract":[{"lang":"eng","text":"We consider the spin-\r\n1\r\n2\r\n Heisenberg chain (XXX model) weakly perturbed away from integrability by an isotropic next-to-nearest neighbor exchange interaction. Recently, it was conjectured that this model possesses an infinite tower of quasiconserved integrals of motion (charges) [D. Kurlov et al., Phys. Rev. B 105, 104302 (2022)]. In this work we first test this conjecture by investigating how the norm of the adiabatic gauge potential (AGP) scales with the system size, which is known to be a remarkably accurate measure of chaos. We find that for the perturbed XXX chain the behavior of the AGP norm corresponds to neither an integrable nor a chaotic regime, which supports the conjectured quasi-integrability of the model. We then prove the conjecture and explicitly construct the infinite set of quasiconserved charges. Our proof relies on the fact that the XXX chain perturbed by next-to-nearest exchange interaction can be viewed as a truncation of an integrable long-range deformation of the Heisenberg spin chain."}],"arxiv":1,"oa_version":"Preprint","date_created":"2023-06-18T22:00:46Z","publisher":"American Physical Society","department":[{"_id":"GradSch"}],"title":"Adiabatic eigenstate deformations and weak integrability breaking of Heisenberg chain","publication":"Physical Review B","publication_identifier":{"eissn":["2469-9969"],"issn":["2469-9950"]},"citation":{"apa":"Orlov, P., Tiutiakina, A., Sharipov, R., Petrova, E., Gritsev, V., &#38; Kurlov, D. V. (2023). Adiabatic eigenstate deformations and weak integrability breaking of Heisenberg chain. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.107.184312\">https://doi.org/10.1103/PhysRevB.107.184312</a>","ieee":"P. Orlov, A. Tiutiakina, R. Sharipov, E. Petrova, V. Gritsev, and D. V. Kurlov, “Adiabatic eigenstate deformations and weak integrability breaking of Heisenberg chain,” <i>Physical Review B</i>, vol. 107, no. 18. American Physical Society, 2023.","chicago":"Orlov, Pavel, Anastasiia Tiutiakina, Rustem Sharipov, Elena Petrova, Vladimir Gritsev, and Denis V. Kurlov. “Adiabatic Eigenstate Deformations and Weak Integrability Breaking of Heisenberg Chain.” <i>Physical Review B</i>. American Physical Society, 2023. <a href=\"https://doi.org/10.1103/PhysRevB.107.184312\">https://doi.org/10.1103/PhysRevB.107.184312</a>.","mla":"Orlov, Pavel, et al. “Adiabatic Eigenstate Deformations and Weak Integrability Breaking of Heisenberg Chain.” <i>Physical Review B</i>, vol. 107, no. 18, 184312, American Physical Society, 2023, doi:<a href=\"https://doi.org/10.1103/PhysRevB.107.184312\">10.1103/PhysRevB.107.184312</a>.","short":"P. Orlov, A. Tiutiakina, R. Sharipov, E. Petrova, V. Gritsev, D.V. Kurlov, Physical Review B 107 (2023).","ista":"Orlov P, Tiutiakina A, Sharipov R, Petrova E, Gritsev V, Kurlov DV. 2023. Adiabatic eigenstate deformations and weak integrability breaking of Heisenberg chain. Physical Review B. 107(18), 184312.","ama":"Orlov P, Tiutiakina A, Sharipov R, Petrova E, Gritsev V, Kurlov DV. Adiabatic eigenstate deformations and weak integrability breaking of Heisenberg chain. <i>Physical Review B</i>. 2023;107(18). doi:<a href=\"https://doi.org/10.1103/PhysRevB.107.184312\">10.1103/PhysRevB.107.184312</a>"},"external_id":{"isi":["001003686900004"],"arxiv":["2303.00729"]},"article_type":"original","issue":"18","acknowledgement":"The numerical computations in this work were performed using QuSpin [83, 84]. We acknowledge useful discussions with Igor Aleiner, Boris Altshuler, Jacopo de Nardis, Anatoli Polkovnikov, and Gora Shlyapnikov. We thank Piotr Sierant and Dario Rosa for drawing our attention to Refs. [31, 42, 46] and Ref. [47], respectively. We are grateful to an anonymous referee for very useful comments and for drawing our attention to Refs. [80, 81]. The work of VG is part of the DeltaITP consortium, a program of the Netherlands Organization for Scientific\r\nResearch (NWO) funded by the Dutch Ministry of Education, Culture and Science (OCW). VG is also partially supported by RSF 19-71-10092. The work of AT was supported by the ERC Starting Grant 101042293 (HEPIQ). RS acknowledges support from Slovenian Research Agency (ARRS) - research programme P1-0402. ","oa":1,"status":"public","year":"2023","_id":"13138","type":"journal_article","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","volume":107},{"file":[{"file_size":521951,"file_name":"2023_LNCS_Meggendorfer.pdf","checksum":"59f707a3949c03793251b0d04c62542a","date_updated":"2023-06-19T07:18:40Z","file_id":"13148","content_type":"application/pdf","success":1,"date_created":"2023-06-19T07:18:40Z","relation":"main_file","access_level":"open_access","creator":"dernst"}],"publication_status":"published","intvolume":"     13993","ddc":["000"],"day":"22","month":"04","language":[{"iso":"eng"}],"file_date_updated":"2023-06-19T07:18:40Z","conference":{"start_date":"2023-04-22","location":"Paris, France","end_date":"2023-04-27","name":"TACAS: Tools and Algorithms for the Construction and Analysis of Systems"},"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_processing_charge":"No","alternative_title":["LNCS"],"related_material":{"record":[{"status":"public","relation":"research_data","id":"14990"}]},"doi":"10.1007/978-3-031-30823-9_25","date_updated":"2024-02-27T07:19:33Z","author":[{"id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1","full_name":"Meggendorfer, Tobias","orcid":"0000-0002-1712-2165","last_name":"Meggendorfer","first_name":"Tobias"}],"date_published":"2023-04-22T00:00:00Z","quality_controlled":"1","scopus_import":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"conference","volume":13993,"page":"489-507","has_accepted_license":"1","year":"2023","_id":"13139","external_id":{"arxiv":["2301.08137"]},"oa":1,"status":"public","publication_identifier":{"isbn":["9783031308222"],"eissn":["1611-3349"],"issn":["0302-9743"]},"citation":{"ama":"Meggendorfer T. Correct approximation of stationary distributions. In: <i>TACAS 2023: Tools and Algorithms for the Construction and Analysis of Systems</i>. Vol 13993. Springer Nature; 2023:489-507. doi:<a href=\"https://doi.org/10.1007/978-3-031-30823-9_25\">10.1007/978-3-031-30823-9_25</a>","short":"T. Meggendorfer, in:, TACAS 2023: Tools and Algorithms for the Construction and Analysis of Systems, Springer Nature, 2023, pp. 489–507.","mla":"Meggendorfer, Tobias. “Correct Approximation of Stationary Distributions.” <i>TACAS 2023: Tools and Algorithms for the Construction and Analysis of Systems</i>, vol. 13993, Springer Nature, 2023, pp. 489–507, doi:<a href=\"https://doi.org/10.1007/978-3-031-30823-9_25\">10.1007/978-3-031-30823-9_25</a>.","ista":"Meggendorfer T. 2023. Correct approximation of stationary distributions. TACAS 2023: Tools and Algorithms for the Construction and Analysis of Systems. TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, vol. 13993, 489–507.","chicago":"Meggendorfer, Tobias. “Correct Approximation of Stationary Distributions.” In <i>TACAS 2023: Tools and Algorithms for the Construction and Analysis of Systems</i>, 13993:489–507. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/978-3-031-30823-9_25\">https://doi.org/10.1007/978-3-031-30823-9_25</a>.","ieee":"T. Meggendorfer, “Correct approximation of stationary distributions,” in <i>TACAS 2023: Tools and Algorithms for the Construction and Analysis of Systems</i>, Paris, France, 2023, vol. 13993, pp. 489–507.","apa":"Meggendorfer, T. (2023). Correct approximation of stationary distributions. In <i>TACAS 2023: Tools and Algorithms for the Construction and Analysis of Systems</i> (Vol. 13993, pp. 489–507). Paris, France: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-031-30823-9_25\">https://doi.org/10.1007/978-3-031-30823-9_25</a>"},"publisher":"Springer Nature","publication":"TACAS 2023: Tools and Algorithms for the Construction and Analysis of Systems","department":[{"_id":"KrCh"}],"title":"Correct approximation of stationary distributions","date_created":"2023-06-18T22:00:46Z","oa_version":"Published Version","arxiv":1,"abstract":[{"lang":"eng","text":"A classical problem for Markov chains is determining their stationary (or steady-state) distribution. This problem has an equally classical solution based on eigenvectors and linear equation systems. However, this approach does not scale to large instances, and iterative solutions are desirable. It turns out that a naive approach, as used by current model checkers, may yield completely wrong results. We present a new approach, which utilizes recent advances in partial exploration and mean payoff computation to obtain a correct, converging approximation."}]},{"volume":13994,"page":"211-228","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"conference","_id":"13141","has_accepted_license":"1","year":"2023","status":"public","oa":1,"citation":{"short":"A. Anand, K. Mallik, S.P. Nayak, A.K. Schmuck, in:, TACAS 2023: Tools and Algorithms for the Construction and Analysis of Systems, Springer Nature, 2023, pp. 211–228.","ista":"Anand A, Mallik K, Nayak SP, Schmuck AK. 2023. Computing adequately permissive assumptions for synthesis. TACAS 2023: Tools and Algorithms for the Construction and Analysis of Systems. TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, vol. 13994, 211–228.","mla":"Anand, Ashwani, et al. “Computing Adequately Permissive Assumptions for Synthesis.” <i>TACAS 2023: Tools and Algorithms for the Construction and Analysis of Systems</i>, vol. 13994, Springer Nature, 2023, pp. 211–28, doi:<a href=\"https://doi.org/10.1007/978-3-031-30820-8_15\">10.1007/978-3-031-30820-8_15</a>.","ama":"Anand A, Mallik K, Nayak SP, Schmuck AK. Computing adequately permissive assumptions for synthesis. In: <i>TACAS 2023: Tools and Algorithms for the Construction and Analysis of Systems</i>. Vol 13994. Springer Nature; 2023:211-228. doi:<a href=\"https://doi.org/10.1007/978-3-031-30820-8_15\">10.1007/978-3-031-30820-8_15</a>","apa":"Anand, A., Mallik, K., Nayak, S. P., &#38; Schmuck, A. K. (2023). Computing adequately permissive assumptions for synthesis. In <i>TACAS 2023: Tools and Algorithms for the Construction and Analysis of Systems</i> (Vol. 13994, pp. 211–228). Paris, France: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-031-30820-8_15\">https://doi.org/10.1007/978-3-031-30820-8_15</a>","chicago":"Anand, Ashwani, Kaushik Mallik, Satya Prakash Nayak, and Anne Kathrin Schmuck. “Computing Adequately Permissive Assumptions for Synthesis.” In <i>TACAS 2023: Tools and Algorithms for the Construction and Analysis of Systems</i>, 13994:211–28. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/978-3-031-30820-8_15\">https://doi.org/10.1007/978-3-031-30820-8_15</a>.","ieee":"A. Anand, K. Mallik, S. P. Nayak, and A. K. Schmuck, “Computing adequately permissive assumptions for synthesis,” in <i>TACAS 2023: Tools and Algorithms for the Construction and Analysis of Systems</i>, Paris, France, 2023, vol. 13994, pp. 211–228."},"publication_identifier":{"isbn":["9783031308192"],"eissn":["1611-3349"],"issn":["0302-9743"]},"publication":"TACAS 2023: Tools and Algorithms for the Construction and Analysis of Systems","title":"Computing adequately permissive assumptions for synthesis","department":[{"_id":"ToHe"}],"publisher":"Springer Nature","date_created":"2023-06-18T22:00:47Z","oa_version":"Published Version","abstract":[{"text":"We automatically compute a new class of environment assumptions in two-player turn-based finite graph games which characterize an “adequate cooperation” needed from the environment to allow the system player to win. Given an ω-regular winning condition Φ for the system player, we compute an ω-regular assumption Ψ for the environment player, such that (i) every environment strategy compliant with Ψ allows the system to fulfill Φ (sufficiency), (ii) Ψ\r\n can be fulfilled by the environment for every strategy of the system (implementability), and (iii) Ψ does not prevent any cooperative strategy choice (permissiveness).\r\nFor parity games, which are canonical representations of ω-regular games, we present a polynomial-time algorithm for the symbolic computation of adequately permissive assumptions and show that our algorithm runs faster and produces better assumptions than existing approaches—both theoretically and empirically. To the best of our knowledge, for ω\r\n-regular games, we provide the first algorithm to compute sufficient and implementable environment assumptions that are also permissive.","lang":"eng"}],"intvolume":"     13994","file":[{"relation":"main_file","creator":"dernst","access_level":"open_access","content_type":"application/pdf","success":1,"date_created":"2023-06-19T08:43:21Z","file_id":"13151","date_updated":"2023-06-19T08:43:21Z","file_size":521425,"file_name":"2023_LNCS_Anand.pdf","checksum":"60dcafc1b4f6f070be43bad3fe877974"}],"publication_status":"published","ddc":["000"],"day":"20","month":"04","language":[{"iso":"eng"}],"file_date_updated":"2023-06-19T08:43:21Z","conference":{"end_date":"2023-04-27","name":"TACAS: Tools and Algorithms for the Construction and Analysis of Systems","start_date":"2023-04-22","location":"Paris, France"},"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"author":[{"last_name":"Anand","first_name":"Ashwani","full_name":"Anand, Ashwani"},{"orcid":"0000-0001-9864-7475","last_name":"Mallik","first_name":"Kaushik","id":"0834ff3c-6d72-11ec-94e0-b5b0a4fb8598","full_name":"Mallik, Kaushik"},{"full_name":"Nayak, Satya Prakash","first_name":"Satya Prakash","last_name":"Nayak"},{"last_name":"Schmuck","first_name":"Anne Kathrin","full_name":"Schmuck, Anne Kathrin"}],"date_published":"2023-04-20T00:00:00Z","article_processing_charge":"No","doi":"10.1007/978-3-031-30820-8_15","date_updated":"2023-06-19T08:49:46Z","alternative_title":["LNCS"],"scopus_import":"1","quality_controlled":"1"},{"oa":1,"acknowledgement":"This work was supported in part by the ERC-2020-AdG 101020093, ERC CoG 863818 (FoRM-SMArt) and the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 665385.","status":"public","publication_identifier":{"isbn":["9783031308222"],"issn":["0302-9743"],"eissn":["1611-3349"]},"citation":{"short":"K. Chatterjee, T.A. Henzinger, M. Lechner, D. Zikelic, in:, Tools and Algorithms for the Construction and Analysis of Systems , Springer Nature, 2023, pp. 3–25.","ista":"Chatterjee K, Henzinger TA, Lechner M, Zikelic D. 2023. A learner-verifier framework for neural network controllers and certificates of stochastic systems. Tools and Algorithms for the Construction and Analysis of Systems . TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, vol. 13993, 3–25.","mla":"Chatterjee, Krishnendu, et al. “A Learner-Verifier Framework for Neural Network Controllers and Certificates of Stochastic Systems.” <i>Tools and Algorithms for the Construction and Analysis of Systems </i>, vol. 13993, Springer Nature, 2023, pp. 3–25, doi:<a href=\"https://doi.org/10.1007/978-3-031-30823-9_1\">10.1007/978-3-031-30823-9_1</a>.","ama":"Chatterjee K, Henzinger TA, Lechner M, Zikelic D. A learner-verifier framework for neural network controllers and certificates of stochastic systems. In: <i>Tools and Algorithms for the Construction and Analysis of Systems </i>. Vol 13993. Springer Nature; 2023:3-25. doi:<a href=\"https://doi.org/10.1007/978-3-031-30823-9_1\">10.1007/978-3-031-30823-9_1</a>","apa":"Chatterjee, K., Henzinger, T. A., Lechner, M., &#38; Zikelic, D. (2023). A learner-verifier framework for neural network controllers and certificates of stochastic systems. In <i>Tools and Algorithms for the Construction and Analysis of Systems </i> (Vol. 13993, pp. 3–25). Paris, France: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-031-30823-9_1\">https://doi.org/10.1007/978-3-031-30823-9_1</a>","chicago":"Chatterjee, Krishnendu, Thomas A Henzinger, Mathias Lechner, and Dorde Zikelic. “A Learner-Verifier Framework for Neural Network Controllers and Certificates of Stochastic Systems.” In <i>Tools and Algorithms for the Construction and Analysis of Systems </i>, 13993:3–25. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/978-3-031-30823-9_1\">https://doi.org/10.1007/978-3-031-30823-9_1</a>.","ieee":"K. Chatterjee, T. A. Henzinger, M. Lechner, and D. Zikelic, “A learner-verifier framework for neural network controllers and certificates of stochastic systems,” in <i>Tools and Algorithms for the Construction and Analysis of Systems </i>, Paris, France, 2023, vol. 13993, pp. 3–25."},"type":"conference","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"3-25","volume":13993,"year":"2023","has_accepted_license":"1","_id":"13142","abstract":[{"text":"Reinforcement learning has received much attention for learning controllers of deterministic systems. We consider a learner-verifier framework for stochastic control systems and survey recent methods that formally guarantee a conjunction of reachability and safety properties. Given a property and a lower bound on the probability of the property being satisfied, our framework jointly learns a control policy and a formal certificate to ensure the satisfaction of the property with a desired probability threshold. Both the control policy and the formal certificate are continuous functions from states to reals, which are learned as parameterized neural networks. While in the deterministic case, the certificates are invariant and barrier functions for safety, or Lyapunov and ranking functions for liveness, in the stochastic case the certificates are supermartingales. For certificate verification, we use interval arithmetic abstract interpretation to bound the expected values of neural network functions.","lang":"eng"}],"publisher":"Springer Nature","department":[{"_id":"KrCh"},{"_id":"ToHe"}],"title":"A learner-verifier framework for neural network controllers and certificates of stochastic systems","publication":"Tools and Algorithms for the Construction and Analysis of Systems ","oa_version":"Published Version","date_created":"2023-06-18T22:00:47Z","ec_funded":1,"day":"22","ddc":["000"],"language":[{"iso":"eng"}],"project":[{"_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","name":"Formal Methods for Stochastic Models: Algorithms and Applications","grant_number":"863818","call_identifier":"H2020"},{"call_identifier":"H2020","name":"International IST Doctoral Program","grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425"}],"month":"04","publication_status":"published","file":[{"file_size":528455,"file_name":"2023_LNCS_Chatterjee.pdf","checksum":"3d8a8bb24d211bc83360dfc2fd744307","file_id":"13150","date_updated":"2023-06-19T08:29:30Z","content_type":"application/pdf","success":1,"date_created":"2023-06-19T08:29:30Z","relation":"main_file","creator":"dernst","access_level":"open_access"}],"intvolume":"     13993","alternative_title":["LNCS"],"doi":"10.1007/978-3-031-30823-9_1","date_updated":"2025-07-14T09:09:52Z","article_processing_charge":"No","author":[{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu","last_name":"Chatterjee","orcid":"0000-0002-4561-241X","first_name":"Krishnendu"},{"last_name":"Henzinger","orcid":"0000-0002-2985-7724","first_name":"Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","full_name":"Henzinger, Thomas A"},{"last_name":"Lechner","first_name":"Mathias","id":"3DC22916-F248-11E8-B48F-1D18A9856A87","full_name":"Lechner, Mathias"},{"first_name":"Dorde","orcid":"0000-0002-4681-1699","last_name":"Zikelic","full_name":"Zikelic, Dorde","id":"294AA7A6-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2023-04-22T00:00:00Z","quality_controlled":"1","scopus_import":"1","file_date_updated":"2023-06-19T08:29:30Z","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"conference":{"location":"Paris, France","start_date":"2023-04-22","name":"TACAS: Tools and Algorithms for the Construction and Analysis of Systems","end_date":"2023-04-27"}},{"acknowledgement":"We are grateful to Pavel Atnashev for clarifying via e-mail several aspects of the primality tests implementated in the PrimeGrid project. Pavel Hubáček is supported by the Czech Academy of Sciences (RVO 67985840), the Grant Agency of the Czech Republic under the grant agreement no. 19-27871X, and by the Charles University project UNCE/SCI/004. Chethan Kamath is supported by Azrieli International Postdoctoral Fellowship, ISF grants 484/18 and 1789/19, and ERC StG project SPP: Secrecy Preserving Proofs.","status":"public","oa":1,"publication_identifier":{"issn":["0302-9743"],"eissn":["1611-3349"],"isbn":["9783031313677"]},"citation":{"ama":"Hoffmann C, Hubáček P, Kamath C, Pietrzak KZ. Certifying giant nonprimes. In: <i>Public-Key Cryptography - PKC 2023</i>. Vol 13940. Springer Nature; 2023:530-553. doi:<a href=\"https://doi.org/10.1007/978-3-031-31368-4_19\">10.1007/978-3-031-31368-4_19</a>","ista":"Hoffmann C, Hubáček P, Kamath C, Pietrzak KZ. 2023. Certifying giant nonprimes. Public-Key Cryptography - PKC 2023. PKC: Public-Key Cryptography, LNCS, vol. 13940, 530–553.","short":"C. Hoffmann, P. Hubáček, C. Kamath, K.Z. Pietrzak, in:, Public-Key Cryptography - PKC 2023, Springer Nature, 2023, pp. 530–553.","mla":"Hoffmann, Charlotte, et al. “Certifying Giant Nonprimes.” <i>Public-Key Cryptography - PKC 2023</i>, vol. 13940, Springer Nature, 2023, pp. 530–53, doi:<a href=\"https://doi.org/10.1007/978-3-031-31368-4_19\">10.1007/978-3-031-31368-4_19</a>.","chicago":"Hoffmann, Charlotte, Pavel Hubáček, Chethan Kamath, and Krzysztof Z Pietrzak. “Certifying Giant Nonprimes.” In <i>Public-Key Cryptography - PKC 2023</i>, 13940:530–53. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/978-3-031-31368-4_19\">https://doi.org/10.1007/978-3-031-31368-4_19</a>.","ieee":"C. Hoffmann, P. Hubáček, C. Kamath, and K. Z. Pietrzak, “Certifying giant nonprimes,” in <i>Public-Key Cryptography - PKC 2023</i>, Atlanta, GA, United States, 2023, vol. 13940, pp. 530–553.","apa":"Hoffmann, C., Hubáček, P., Kamath, C., &#38; Pietrzak, K. Z. (2023). Certifying giant nonprimes. In <i>Public-Key Cryptography - PKC 2023</i> (Vol. 13940, pp. 530–553). Atlanta, GA, United States: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-031-31368-4_19\">https://doi.org/10.1007/978-3-031-31368-4_19</a>"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"conference","volume":13940,"page":"530-553","year":"2023","_id":"13143","abstract":[{"text":"GIMPS and PrimeGrid are large-scale distributed projects dedicated to searching giant prime numbers, usually of special forms like Mersenne and Proth primes. The numbers in the current search-space are millions of digits large and the participating volunteers need to run resource-consuming primality tests. Once a candidate prime N has been found, the only way for another party to independently verify the primality of N used to be by repeating the expensive primality test. To avoid the need for second recomputation of each primality test, these projects have recently adopted certifying mechanisms that enable efficient verification of performed tests. However, the mechanisms presently in place only detect benign errors and there is no guarantee against adversarial behavior: a malicious volunteer can mislead the project to reject a giant prime as being non-prime.\r\nIn this paper, we propose a practical, cryptographically-sound mechanism for certifying the non-primality of Proth numbers. That is, a volunteer can – parallel to running the primality test for N – generate an efficiently verifiable proof at a little extra cost certifying that N is not prime. The interactive protocol has statistical soundness and can be made non-interactive using the Fiat-Shamir heuristic.\r\nOur approach is based on a cryptographic primitive called Proof of Exponentiation (PoE) which, for a group G, certifies that a tuple (x,y,T)∈G2×N satisfies x2T=y (Pietrzak, ITCS 2019 and Wesolowski, J. Cryptol. 2020). In particular, we show how to adapt Pietrzak’s PoE at a moderate additional cost to make it a cryptographically-sound certificate of non-primality.","lang":"eng"}],"publisher":"Springer Nature","publication":"Public-Key Cryptography - PKC 2023","title":"Certifying giant nonprimes","department":[{"_id":"KrPi"}],"date_created":"2023-06-18T22:00:47Z","oa_version":"Submitted Version","day":"02","month":"05","language":[{"iso":"eng"}],"publication_status":"published","intvolume":"     13940","main_file_link":[{"open_access":"1","url":"https://eprint.iacr.org/2023/238"}],"article_processing_charge":"No","doi":"10.1007/978-3-031-31368-4_19","date_updated":"2023-06-19T08:03:37Z","alternative_title":["LNCS"],"date_published":"2023-05-02T00:00:00Z","author":[{"full_name":"Hoffmann, Charlotte","id":"0f78d746-dc7d-11ea-9b2f-83f92091afe7","first_name":"Charlotte","last_name":"Hoffmann"},{"first_name":"Pavel","last_name":"Hubáček","full_name":"Hubáček, Pavel"},{"first_name":"Chethan","last_name":"Kamath","full_name":"Kamath, Chethan"},{"id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","full_name":"Pietrzak, Krzysztof Z","last_name":"Pietrzak","orcid":"0000-0002-9139-1654","first_name":"Krzysztof Z"}],"quality_controlled":"1","scopus_import":"1","conference":{"end_date":"2023-05-10","name":"PKC: Public-Key Cryptography","start_date":"2023-05-07","location":"Atlanta, GA, United States"}},{"intvolume":"        28","file":[{"content_type":"application/pdf","date_created":"2023-06-19T09:37:40Z","success":1,"relation":"main_file","access_level":"open_access","creator":"dernst","file_size":271434,"checksum":"4a543fe4b3f9e747cc52167c17bfb524","file_name":"2023_ElectronCommProbability_Schiavo.pdf","date_updated":"2023-06-19T09:37:40Z","file_id":"13152"}],"publication_status":"published","ddc":["510"],"day":"05","isi":1,"month":"05","language":[{"iso":"eng"}],"project":[{"grant_number":"E208","name":"Configuration Spaces over Non-Smooth Spaces","_id":"34dbf174-11ca-11ed-8bc3-afe9d43d4b9c"}],"file_date_updated":"2023-06-19T09:37:40Z","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"author":[{"id":"ECEBF480-9E4F-11EA-B557-B0823DDC885E","full_name":"Dello Schiavo, Lorenzo","orcid":"0000-0002-9881-6870","last_name":"Dello Schiavo","first_name":"Lorenzo"},{"last_name":"Lytvynov","first_name":"Eugene","full_name":"Lytvynov, Eugene"}],"date_published":"2023-05-05T00:00:00Z","article_processing_charge":"No","doi":"10.1214/23-ECP528","date_updated":"2023-12-13T11:24:57Z","scopus_import":"1","quality_controlled":"1","volume":28,"page":"1-12","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","_id":"13145","year":"2023","has_accepted_license":"1","oa":1,"acknowledgement":"Research supported by the Sfb 1060 The Mathematics of Emergent Effects (University of Bonn). L.D.S. gratefully acknowledges funding of his current position by the Austrian Science Fund (FWF) through project ESPRIT 208.","status":"public","external_id":{"isi":["001042025400001"]},"article_type":"original","citation":{"chicago":"Dello Schiavo, Lorenzo, and Eugene Lytvynov. “A Mecke-Type Characterization of the Dirichlet–Ferguson Measure.” <i>Electronic Communications in Probability</i>. Institute of Mathematical Statistics, 2023. <a href=\"https://doi.org/10.1214/23-ECP528\">https://doi.org/10.1214/23-ECP528</a>.","ieee":"L. Dello Schiavo and E. Lytvynov, “A Mecke-type characterization of the Dirichlet–Ferguson measure,” <i>Electronic Communications in Probability</i>, vol. 28. Institute of Mathematical Statistics, pp. 1–12, 2023.","apa":"Dello Schiavo, L., &#38; Lytvynov, E. (2023). A Mecke-type characterization of the Dirichlet–Ferguson measure. <i>Electronic Communications in Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/23-ECP528\">https://doi.org/10.1214/23-ECP528</a>","ama":"Dello Schiavo L, Lytvynov E. A Mecke-type characterization of the Dirichlet–Ferguson measure. <i>Electronic Communications in Probability</i>. 2023;28:1-12. doi:<a href=\"https://doi.org/10.1214/23-ECP528\">10.1214/23-ECP528</a>","ista":"Dello Schiavo L, Lytvynov E. 2023. A Mecke-type characterization of the Dirichlet–Ferguson measure. Electronic Communications in Probability. 28, 1–12.","short":"L. Dello Schiavo, E. Lytvynov, Electronic Communications in Probability 28 (2023) 1–12.","mla":"Dello Schiavo, Lorenzo, and Eugene Lytvynov. “A Mecke-Type Characterization of the Dirichlet–Ferguson Measure.” <i>Electronic Communications in Probability</i>, vol. 28, Institute of Mathematical Statistics, 2023, pp. 1–12, doi:<a href=\"https://doi.org/10.1214/23-ECP528\">10.1214/23-ECP528</a>."},"publication_identifier":{"eissn":["1083-589X"]},"publication":"Electronic Communications in Probability","title":"A Mecke-type characterization of the Dirichlet–Ferguson measure","department":[{"_id":"JaMa"}],"publisher":"Institute of Mathematical Statistics","date_created":"2023-06-18T22:00:48Z","oa_version":"Published Version","abstract":[{"lang":"eng","text":"We prove a characterization of the Dirichlet–Ferguson measure over an arbitrary finite diffuse measure space. We provide an interpretation of this characterization in analogy with the Mecke identity for Poisson point processes."}]},{"month":"07","language":[{"iso":"eng"}],"ddc":["000"],"day":"01","file":[{"date_updated":"2023-07-18T09:18:55Z","file_id":"13249","file_size":316959,"file_name":"2023_ASHPC_Schloegl.pdf","checksum":"ec8e4295d54171032cdd1b01423eb4a6","relation":"main_file","access_level":"open_access","creator":"dernst","content_type":"application/pdf","success":1,"date_created":"2023-07-18T09:18:55Z"}],"publication_status":"inpress","quality_controlled":"1","article_processing_charge":"No","date_updated":"2023-07-18T09:30:54Z","author":[{"first_name":"Alois","last_name":"Schlögl","orcid":"0000-0002-5621-8100","full_name":"Schlögl, Alois","id":"45BF87EE-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Stefano","last_name":"Elefante","full_name":"Elefante, Stefano","id":"490F40CE-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Hodirnau, Victor-Valentin","id":"3661B498-F248-11E8-B48F-1D18A9856A87","first_name":"Victor-Valentin","last_name":"Hodirnau"}],"date_published":"2023-07-01T00:00:00Z","conference":{"location":"Maribor, Slovenia","start_date":"2023-06-13","name":"ASHPC: Austrian-Slovenian HPC Meeting","end_date":"2023-06-15"},"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file_date_updated":"2023-07-18T09:18:55Z","citation":{"ama":"Schlögl A, Elefante S, Hodirnau V-V. Running Windows-applications on a Linux HPC cluster using WINE. In: <i>ASHPC23 - Austrian-Slovenian HPC Meeting 2023</i>. EuroCC; :59-59.","ista":"Schlögl A, Elefante S, Hodirnau V-V. Running Windows-applications on a Linux HPC cluster using WINE. ASHPC23 - Austrian-Slovenian HPC Meeting 2023. ASHPC: Austrian-Slovenian HPC Meeting, 59–59.","short":"A. Schlögl, S. Elefante, V.-V. Hodirnau, in:, ASHPC23 - Austrian-Slovenian HPC Meeting 2023, EuroCC, n.d., pp. 59–59.","mla":"Schlögl, Alois, et al. “Running Windows-Applications on a Linux HPC Cluster Using WINE.” <i>ASHPC23 - Austrian-Slovenian HPC Meeting 2023</i>, EuroCC, pp. 59–59.","ieee":"A. Schlögl, S. Elefante, and V.-V. Hodirnau, “Running Windows-applications on a Linux HPC cluster using WINE,” in <i>ASHPC23 - Austrian-Slovenian HPC Meeting 2023</i>, Maribor, Slovenia, pp. 59–59.","chicago":"Schlögl, Alois, Stefano Elefante, and Victor-Valentin Hodirnau. “Running Windows-Applications on a Linux HPC Cluster Using WINE.” In <i>ASHPC23 - Austrian-Slovenian HPC Meeting 2023</i>, 59–59. EuroCC, n.d.","apa":"Schlögl, A., Elefante, S., &#38; Hodirnau, V.-V. (n.d.). Running Windows-applications on a Linux HPC cluster using WINE. In <i>ASHPC23 - Austrian-Slovenian HPC Meeting 2023</i> (pp. 59–59). Maribor, Slovenia: EuroCC."},"status":"public","oa":1,"acknowledgement":"Thanks to Jesse Hansen for his suggestions on improving the abstract.","has_accepted_license":"1","year":"2023","_id":"13161","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"conference_abstract","page":"59-59","date_created":"2023-06-23T11:01:23Z","oa_version":"Submitted Version","publisher":"EuroCC","publication":"ASHPC23 - Austrian-Slovenian HPC Meeting 2023","title":"Running Windows-applications on a Linux HPC cluster using WINE","department":[{"_id":"ScienComp"},{"_id":"EM-Fac"}]},{"article_processing_charge":"No","date_updated":"2023-07-18T09:32:16Z","date_published":"2023-07-01T00:00:00Z","author":[{"id":"490F40CE-F248-11E8-B48F-1D18A9856A87","full_name":"Elefante, Stefano","last_name":"Elefante","first_name":"Stefano"},{"full_name":"Stadlbauer, Stephan","id":"4D0BC184-F248-11E8-B48F-1D18A9856A87","first_name":"Stephan","last_name":"Stadlbauer"},{"last_name":"Alexander","first_name":"Michael F","id":"3A02A8FA-F248-11E8-B48F-1D18A9856A87","full_name":"Alexander, Michael F"},{"orcid":"0000-0002-5621-8100","last_name":"Schlögl","first_name":"Alois","id":"45BF87EE-F248-11E8-B48F-1D18A9856A87","full_name":"Schlögl, Alois"}],"quality_controlled":"1","publisher":"EuroCC","publication":"ASHPC23 - Austrian-Slovenian HPC Meeting 2023","file_date_updated":"2023-07-18T09:28:30Z","department":[{"_id":"ScienComp"}],"title":"Cryo-EM software packages: A sys-admins point of view","conference":{"location":"Maribor, Slovenia","start_date":"2023-06-12","name":"ASHPC: Austrian-Slovenian HPC Meeting","end_date":"2023-06-15"},"date_created":"2023-06-23T11:03:18Z","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"oa_version":"Submitted Version","ddc":["000"],"day":"01","status":"public","oa":1,"month":"07","language":[{"iso":"eng"}],"citation":{"ama":"Elefante S, Stadlbauer S, Alexander MF, Schlögl A. Cryo-EM software packages: A sys-admins point of view. In: <i>ASHPC23 - Austrian-Slovenian HPC Meeting 2023</i>. EuroCC; :42-42.","short":"S. Elefante, S. Stadlbauer, M.F. Alexander, A. Schlögl, in:, ASHPC23 - Austrian-Slovenian HPC Meeting 2023, EuroCC, n.d., pp. 42–42.","ista":"Elefante S, Stadlbauer S, Alexander MF, Schlögl A. Cryo-EM software packages: A sys-admins point of view. ASHPC23 - Austrian-Slovenian HPC Meeting 2023. ASHPC: Austrian-Slovenian HPC Meeting, 42–42.","mla":"Elefante, Stefano, et al. “Cryo-EM Software Packages: A Sys-Admins Point of View.” <i>ASHPC23 - Austrian-Slovenian HPC Meeting 2023</i>, EuroCC, pp. 42–42.","chicago":"Elefante, Stefano, Stephan Stadlbauer, Michael F Alexander, and Alois Schlögl. “Cryo-EM Software Packages: A Sys-Admins Point of View.” In <i>ASHPC23 - Austrian-Slovenian HPC Meeting 2023</i>, 42–42. EuroCC, n.d.","ieee":"S. Elefante, S. Stadlbauer, M. F. Alexander, and A. Schlögl, “Cryo-EM software packages: A sys-admins point of view,” in <i>ASHPC23 - Austrian-Slovenian HPC Meeting 2023</i>, Maribor, Slovenia, pp. 42–42.","apa":"Elefante, S., Stadlbauer, S., Alexander, M. F., &#38; Schlögl, A. (n.d.). Cryo-EM software packages: A sys-admins point of view. In <i>ASHPC23 - Austrian-Slovenian HPC Meeting 2023</i> (pp. 42–42). Maribor, Slovenia: EuroCC."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"conference_abstract","page":"42-42","file":[{"checksum":"0ab6173cd5c5634ed773cd37ff012681","file_name":"2023_ASHPC_Elefante.pdf","file_size":380354,"date_updated":"2023-07-18T09:28:30Z","file_id":"13250","date_created":"2023-07-18T09:28:30Z","success":1,"content_type":"application/pdf","creator":"dernst","access_level":"open_access","relation":"main_file"}],"has_accepted_license":"1","year":"2023","publication_status":"accepted","_id":"13162"},{"oa_version":"Published Version","date_created":"2023-06-25T22:00:45Z","department":[{"_id":"FyKo"}],"title":"Divergent molecular signatures in fish Bouncer proteins define cross-fertilization boundaries","publication":"Nature Communications","publisher":"Springer Nature","abstract":[{"text":"Molecular compatibility between gametes is a prerequisite for successful fertilization. As long as a sperm and egg can recognize and bind each other via their surface proteins, gamete fusion may occur even between members of separate species, resulting in hybrids that can impact speciation. The egg membrane protein Bouncer confers species specificity to gamete interactions between medaka and zebrafish, preventing their cross-fertilization. Here, we leverage this specificity to uncover distinct amino acid residues and N-glycosylation patterns that differentially influence the function of medaka and zebrafish Bouncer and contribute to cross-species incompatibility. Curiously, in contrast to the specificity observed for medaka and zebrafish Bouncer, seahorse and fugu Bouncer are compatible with both zebrafish and medaka sperm, in line with the pervasive purifying selection that dominates Bouncer’s evolution. The Bouncer-sperm interaction is therefore the product of seemingly opposing evolutionary forces that, for some species, restrict fertilization to closely related fish, and for others, allow broad gamete compatibility that enables hybridization.","lang":"eng"}],"_id":"13164","year":"2023","has_accepted_license":"1","volume":14,"type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ieee":"K. R. B. Gert <i>et al.</i>, “Divergent molecular signatures in fish Bouncer proteins define cross-fertilization boundaries,” <i>Nature Communications</i>, vol. 14. Springer Nature, 2023.","chicago":"Gert, Krista R.B., Karin Panser, Joachim Surm, Benjamin S. Steinmetz, Alexander Schleiffer, Luca Jovine, Yehu Moran, Fyodor Kondrashov, and Andrea Pauli. “Divergent Molecular Signatures in Fish Bouncer Proteins Define Cross-Fertilization Boundaries.” <i>Nature Communications</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s41467-023-39317-4\">https://doi.org/10.1038/s41467-023-39317-4</a>.","apa":"Gert, K. R. B., Panser, K., Surm, J., Steinmetz, B. S., Schleiffer, A., Jovine, L., … Pauli, A. (2023). Divergent molecular signatures in fish Bouncer proteins define cross-fertilization boundaries. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-023-39317-4\">https://doi.org/10.1038/s41467-023-39317-4</a>","ama":"Gert KRB, Panser K, Surm J, et al. Divergent molecular signatures in fish Bouncer proteins define cross-fertilization boundaries. <i>Nature Communications</i>. 2023;14. doi:<a href=\"https://doi.org/10.1038/s41467-023-39317-4\">10.1038/s41467-023-39317-4</a>","short":"K.R.B. Gert, K. Panser, J. Surm, B.S. Steinmetz, A. Schleiffer, L. Jovine, Y. Moran, F. Kondrashov, A. Pauli, Nature Communications 14 (2023).","mla":"Gert, Krista R. B., et al. “Divergent Molecular Signatures in Fish Bouncer Proteins Define Cross-Fertilization Boundaries.” <i>Nature Communications</i>, vol. 14, 3506, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1038/s41467-023-39317-4\">10.1038/s41467-023-39317-4</a>.","ista":"Gert KRB, Panser K, Surm J, Steinmetz BS, Schleiffer A, Jovine L, Moran Y, Kondrashov F, Pauli A. 2023. Divergent molecular signatures in fish Bouncer proteins define cross-fertilization boundaries. Nature Communications. 14, 3506."},"publication_identifier":{"eissn":["2041-1723"]},"status":"public","oa":1,"acknowledgement":"We thank Manfred Schartl for sharing RNA-seq data from medaka ovaries and testes prior to publication; Maria Novatchkova for help with RNA-seq analysis; Katharina Lust for advice on medaka techniques; Milan Malinsky for input on Lake Malawi cichlid Bouncer sequences; Felicia Spitzer, Mirjam Binner, and Anna Bandura for help with genotyping; Friedrich Puhl, Kerstin Rattner, Julia Koenig, and Dijana Sunjic for taking care of zebrafish and medaka; and the Pauli lab for helpful discussions about the project and feedback on the manuscript. K.R.B.G. was supported by a DOC Fellowship from the Austrian Academy of Sciences. Work in the Pauli lab was supported by the FWF START program (Y 1031-B28 to A.P.), the ERC CoG 101044495/GaMe, the HFSP Career Development Award (CDA00066/2015 to A.P.), a HFSP Young Investigator Award (RGY0079/2020 to A.P.) and the FWF SFB RNA-Deco (project number F80). The IMP receives institutional funding from Boehringer Ingelheim and the Austrian Research Promotion Agency (Headquarter grant FFG-852936). Work by J.S. and Y.M. in this project was supported by the Israel Science Foundation grant 636/21 to Y.M. Work by L.J. was supported by the Swedish Research Council grant 2020-04936 and the Knut and Alice Wallenberg Foundation grant 2018.0042. For the purpose of Open Access, the author has applied a CC BY public copyright license to any Author Accepted Manuscript (AAM) version arising from this submission.","external_id":{"isi":["001048208600023"]},"article_type":"original","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file_date_updated":"2023-06-26T10:26:04Z","article_number":"3506","scopus_import":"1","quality_controlled":"1","date_published":"2023-06-14T00:00:00Z","author":[{"last_name":"Gert","first_name":"Krista R.B.","full_name":"Gert, Krista R.B."},{"full_name":"Panser, Karin","first_name":"Karin","last_name":"Panser"},{"last_name":"Surm","first_name":"Joachim","full_name":"Surm, Joachim"},{"full_name":"Steinmetz, Benjamin S.","first_name":"Benjamin S.","last_name":"Steinmetz"},{"first_name":"Alexander","last_name":"Schleiffer","full_name":"Schleiffer, Alexander"},{"first_name":"Luca","last_name":"Jovine","full_name":"Jovine, Luca"},{"full_name":"Moran, Yehu","last_name":"Moran","first_name":"Yehu"},{"first_name":"Fyodor","orcid":"0000-0001-8243-4694","last_name":"Kondrashov","full_name":"Kondrashov, Fyodor","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Pauli, Andrea","first_name":"Andrea","last_name":"Pauli"}],"doi":"10.1038/s41467-023-39317-4","date_updated":"2023-12-13T11:26:34Z","article_processing_charge":"No","intvolume":"        14","publication_status":"published","file":[{"content_type":"application/pdf","success":1,"date_created":"2023-06-26T10:26:04Z","relation":"main_file","access_level":"open_access","creator":"dernst","file_size":1555006,"file_name":"2023_NatureComm_Gert.pdf","checksum":"d6165f41c7f1c2c04b04256ec9f003fb","date_updated":"2023-06-26T10:26:04Z","file_id":"13172"}],"language":[{"iso":"eng"}],"isi":1,"month":"06","day":"14","ddc":["570"]},{"type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":199,"year":"2023","has_accepted_license":"1","_id":"13165","article_type":"original","external_id":{"arxiv":["2206.13592"]},"issue":"10","oa":1,"status":"public","publication_identifier":{"eissn":["1096-0899"],"issn":["0097-3165"]},"citation":{"chicago":"Fang, Lixing, Hao Huang, János Pach, Gábor Tardos, and Junchi Zuo. “Successive Vertex Orderings of Fully Regular Graphs.” <i>Journal of Combinatorial Theory. Series A</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.jcta.2023.105776\">https://doi.org/10.1016/j.jcta.2023.105776</a>.","ieee":"L. Fang, H. Huang, J. Pach, G. Tardos, and J. Zuo, “Successive vertex orderings of fully regular graphs,” <i>Journal of Combinatorial Theory. Series A</i>, vol. 199, no. 10. Elsevier, 2023.","apa":"Fang, L., Huang, H., Pach, J., Tardos, G., &#38; Zuo, J. (2023). Successive vertex orderings of fully regular graphs. <i>Journal of Combinatorial Theory. Series A</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jcta.2023.105776\">https://doi.org/10.1016/j.jcta.2023.105776</a>","ama":"Fang L, Huang H, Pach J, Tardos G, Zuo J. Successive vertex orderings of fully regular graphs. <i>Journal of Combinatorial Theory Series A</i>. 2023;199(10). doi:<a href=\"https://doi.org/10.1016/j.jcta.2023.105776\">10.1016/j.jcta.2023.105776</a>","short":"L. Fang, H. Huang, J. Pach, G. Tardos, J. Zuo, Journal of Combinatorial Theory. Series A 199 (2023).","mla":"Fang, Lixing, et al. “Successive Vertex Orderings of Fully Regular Graphs.” <i>Journal of Combinatorial Theory. Series A</i>, vol. 199, no. 10, 105776, Elsevier, 2023, doi:<a href=\"https://doi.org/10.1016/j.jcta.2023.105776\">10.1016/j.jcta.2023.105776</a>.","ista":"Fang L, Huang H, Pach J, Tardos G, Zuo J. 2023. Successive vertex orderings of fully regular graphs. Journal of Combinatorial Theory. Series A. 199(10), 105776."},"publisher":"Elsevier","department":[{"_id":"HeEd"}],"title":"Successive vertex orderings of fully regular graphs","publication":"Journal of Combinatorial Theory. Series A","oa_version":"Published Version","date_created":"2023-06-25T22:00:45Z","arxiv":1,"abstract":[{"lang":"eng","text":"A graph G=(V, E) is called fully regular if for every independent set I c V, the number of vertices in V\\I  that are not connected to any element of I depends only on the size of I. A linear ordering of the vertices of G is called successive if for every i, the first i vertices induce a connected subgraph of G. We give an explicit formula for the number of successive vertex orderings of a fully regular graph.\r\nAs an application of our results, we give alternative proofs of two theorems of Stanley and Gao & Peng, determining the number of linear edge orderings of complete graphs and complete bipartite graphs, respectively, with the property that the first i edges induce a connected subgraph.\r\nAs another application, we give a simple product formula for the number of linear orderings of the hyperedges of a complete 3-partite 3-uniform hypergraph such that, for every i, the first i hyperedges induce a connected subgraph. We found similar formulas for complete (non-partite) 3-uniform hypergraphs and in another closely related case, but we managed to verify them only when the number of vertices is small."}],"publication_status":"published","file":[{"content_type":"application/pdf","success":1,"date_created":"2024-01-30T12:03:10Z","relation":"main_file","creator":"dernst","access_level":"open_access","file_size":352555,"file_name":"2023_JourCombinatiorialTheory_Fang.pdf","checksum":"9eebc213b4182a66063a99083ff5bd04","file_id":"14902","date_updated":"2024-01-30T12:03:10Z"}],"intvolume":"       199","day":"01","ddc":["510"],"language":[{"iso":"eng"}],"month":"10","article_number":"105776","file_date_updated":"2024-01-30T12:03:10Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","short":"CC BY-NC-SA (4.0)","image":"/images/cc_by_nc_sa.png"},"doi":"10.1016/j.jcta.2023.105776","date_updated":"2024-01-30T12:03:51Z","article_processing_charge":"Yes (in subscription journal)","date_published":"2023-10-01T00:00:00Z","author":[{"full_name":"Fang, Lixing","last_name":"Fang","first_name":"Lixing"},{"full_name":"Huang, Hao","first_name":"Hao","last_name":"Huang"},{"id":"E62E3130-B088-11EA-B919-BF823C25FEA4","full_name":"Pach, János","last_name":"Pach","first_name":"János"},{"last_name":"Tardos","first_name":"Gábor","full_name":"Tardos, Gábor"},{"last_name":"Zuo","first_name":"Junchi","full_name":"Zuo, Junchi"}],"quality_controlled":"1","scopus_import":"1"},{"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file_date_updated":"2023-06-26T09:58:53Z","article_number":"9382","scopus_import":"1","quality_controlled":"1","author":[{"full_name":"Vetrova, Alexandra A.","last_name":"Vetrova","first_name":"Alexandra A."},{"last_name":"Kupaeva","first_name":"Daria M.","full_name":"Kupaeva, Daria M."},{"id":"a521c60b-0815-11ed-9b02-b8bd522477c8","full_name":"Kizenko, Alena","last_name":"Kizenko","first_name":"Alena"},{"full_name":"Lebedeva, Tatiana S.","first_name":"Tatiana S.","last_name":"Lebedeva"},{"full_name":"Walentek, Peter","last_name":"Walentek","first_name":"Peter"},{"first_name":"Nikoloz","last_name":"Tsikolia","full_name":"Tsikolia, Nikoloz"},{"full_name":"Kremnyov, Stanislav V.","last_name":"Kremnyov","first_name":"Stanislav V."}],"date_published":"2023-06-09T00:00:00Z","doi":"10.1038/s41598-023-35979-8","date_updated":"2023-08-02T06:17:18Z","article_processing_charge":"No","intvolume":"        13","publication_status":"published","file":[{"relation":"main_file","creator":"dernst","access_level":"open_access","content_type":"application/pdf","date_created":"2023-06-26T09:58:53Z","success":1,"date_updated":"2023-06-26T09:58:53Z","file_id":"13170","file_size":4844149,"checksum":"baddf6b2fa9adf88263d4a3b0998f0f2","file_name":"2023_ScientificReports_Vetrova.pdf"}],"language":[{"iso":"eng"}],"isi":1,"month":"06","pmid":1,"day":"09","ddc":["570"],"oa_version":"Published Version","date_created":"2023-06-25T22:00:46Z","department":[{"_id":"GradSch"}],"title":"The evolutionary history of Brachyury genes in Hydrozoa involves duplications, divergence, and neofunctionalization","publication":"Scientific Reports","publisher":"Springer Nature","abstract":[{"lang":"eng","text":"Brachyury, a member of T-box gene family, is widely known for its major role in mesoderm specification in bilaterians. It is also present in non-bilaterian metazoans, such as cnidarians, where it acts as a component of an axial patterning system. In this study, we present a phylogenetic analysis of Brachyury genes within phylum Cnidaria, investigate differential expression and address a functional framework of Brachyury paralogs in hydrozoan Dynamena pumila. Our analysis indicates two duplication events of Brachyury within the cnidarian lineage. The first duplication likely appeared in the medusozoan ancestor, resulting in two copies in medusozoans, while the second duplication arose in the hydrozoan ancestor, resulting in three copies in hydrozoans. Brachyury1 and 2 display a conservative expression pattern marking the oral pole of the body axis in D. pumila. On the contrary, Brachyury3 expression was detected in scattered presumably nerve cells of the D. pumila larva. Pharmacological modulations indicated that Brachyury3 is not under regulation of cWnt signaling in contrast to the other two Brachyury genes. Divergence in expression patterns and regulation suggest neofunctionalization of Brachyury3 in hydrozoans."}],"_id":"13166","has_accepted_license":"1","year":"2023","volume":13,"type":"journal_article","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","citation":{"ama":"Vetrova AA, Kupaeva DM, Kizenko A, et al. The evolutionary history of Brachyury genes in Hydrozoa involves duplications, divergence, and neofunctionalization. <i>Scientific Reports</i>. 2023;13. doi:<a href=\"https://doi.org/10.1038/s41598-023-35979-8\">10.1038/s41598-023-35979-8</a>","mla":"Vetrova, Alexandra A., et al. “The Evolutionary History of Brachyury Genes in Hydrozoa Involves Duplications, Divergence, and Neofunctionalization.” <i>Scientific Reports</i>, vol. 13, 9382, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1038/s41598-023-35979-8\">10.1038/s41598-023-35979-8</a>.","short":"A.A. Vetrova, D.M. Kupaeva, A. Kizenko, T.S. Lebedeva, P. Walentek, N. Tsikolia, S.V. Kremnyov, Scientific Reports 13 (2023).","ista":"Vetrova AA, Kupaeva DM, Kizenko A, Lebedeva TS, Walentek P, Tsikolia N, Kremnyov SV. 2023. The evolutionary history of Brachyury genes in Hydrozoa involves duplications, divergence, and neofunctionalization. Scientific Reports. 13, 9382.","ieee":"A. A. Vetrova <i>et al.</i>, “The evolutionary history of Brachyury genes in Hydrozoa involves duplications, divergence, and neofunctionalization,” <i>Scientific Reports</i>, vol. 13. Springer Nature, 2023.","chicago":"Vetrova, Alexandra A., Daria M. Kupaeva, Alena Kizenko, Tatiana S. Lebedeva, Peter Walentek, Nikoloz Tsikolia, and Stanislav V. Kremnyov. “The Evolutionary History of Brachyury Genes in Hydrozoa Involves Duplications, Divergence, and Neofunctionalization.” <i>Scientific Reports</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s41598-023-35979-8\">https://doi.org/10.1038/s41598-023-35979-8</a>.","apa":"Vetrova, A. A., Kupaeva, D. M., Kizenko, A., Lebedeva, T. S., Walentek, P., Tsikolia, N., &#38; Kremnyov, S. V. (2023). The evolutionary history of Brachyury genes in Hydrozoa involves duplications, divergence, and neofunctionalization. <i>Scientific Reports</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41598-023-35979-8\">https://doi.org/10.1038/s41598-023-35979-8</a>"},"publication_identifier":{"eissn":["2045-2322"]},"acknowledgement":"We thank N.A. Pertsov White Sea Biological Station of Moscow State University for the help and support in obtaining samples and providing access to all required facilities and equipment of the “Center of Microscopy WSBS MSU”. We are grateful to Dr. Amro Hamdoun for pCS2+8 plasmid (Addgene plasmid # 34931).\r\nWork in the Walentek lab is supported by the Deutsche Forschungsgemeinschaft (DFG) under the Emmy Noether Programme (grant WA3365/2-2) and under Germany’s Excellence Strategy (CIBSS-EXC-2189-Project ID 390939984). SK is supported by the project No. 0088-2021-0009 of the Koltzov Institute of Developmental Biology of the RAS. The study of molecular patterning of D. pumila colony was funded by RFBR, project number 20-04-00978a (to S.K.).","status":"public","oa":1,"external_id":{"pmid":["37296138"],"isi":["001006690200045"]},"article_type":"original"},{"abstract":[{"text":"Urban-living individuals are exposed to many environmental factors that may combine and interact to influence mental health. While individual factors of an urban environment have been investigated in isolation, no attempt has been made to model how complex, real-life exposure to living in the city relates to brain and mental health, and how this is moderated by genetic factors. Using the data of 156,075 participants from the UK Biobank, we carried out sparse canonical correlation analyses to investigate the relationships between urban environments and psychiatric symptoms. We found an environmental profile of social deprivation, air pollution, street network and urban land-use density that was positively correlated with an affective symptom group (r = 0.22, Pperm < 0.001), mediated by brain volume differences consistent with reward processing, and moderated by genes enriched for stress response, including CRHR1, explaining 2.01% of the variance in brain volume differences. Protective factors such as greenness and generous destination accessibility were negatively correlated with an anxiety symptom group (r = 0.10, Pperm < 0.001), mediated by brain regions necessary for emotion regulation and moderated by EXD3, explaining 1.65% of the variance. The third urban environmental profile was correlated with an emotional instability symptom group (r = 0.03, Pperm < 0.001). Our findings suggest that different environmental profiles of urban living may influence specific psychiatric symptom groups through distinct neurobiological pathways.","lang":"eng"}],"publisher":"Springer Nature","publication":"Nature Medicine","title":"Effects of urban living environments on mental health in adults","department":[{"_id":"GaNo"}],"date_created":"2023-06-25T22:00:46Z","oa_version":"Published Version","article_type":"original","external_id":{"isi":["001013172700001"]},"acknowledgement":"This work received support from the European Union-funded Horizon Europe project ‘environMENTAL’ (no. 101057429 to G.S., A.M. and M.M.N.) and cofunding by UK Research and Innovation under the UK Government’s Horizon Europe funding guarantee (nos. 10041392 and 10038599) for study design and data analysis; the Horizon 2020-funded European Research Council Advanced Grant ‘STRATIFY’ (no. 695313 to G.S. for study design and data analysis); the Human Brain Project (HBP SGA3, no. 945539 to G.S. for study design and data analysis); the National Institutes of Health (grant no. R01DA049238 to G.S. for study design and data analysis); the German Research Foundation (COPE; grant no. 675346 to G.S. for study design and data analysis); the National Natural Science Foundation of China (grant no. 82001797 to J.X., grant no. 82030053 to C.Y., grant no. 82202093 to J.T. and grant no. 82150710554 to G.S. for study design, data analysis and preparation of the manuscript); National Key Research and Development Program of China (grant no. 2018YFC1314301 to C.Y. for study design and data analysis); Tianjin Applied Basic Research Diversified Investment Foundation (grant no. 21JCYBJC01360 to J.X. for study design and data analysis); Tianjin Health Technology Project (grant no. TJWJ2021QN002 to J.X. for preparation of the manuscript); Science & Technology Development Fund of the Tianjin Education Commission for Higher Education (grant no. 2019KJ195 to J.X. for preparation of the manuscript); the Tianjin Medical University ‘Clinical Talent Training 123 Climbing Plan’ to J.X. for the preparation of the manuscript; Tianjin Key Medical Discipline (Specialty) Construction Project (grant no. TJYXZDXK-001A to C.Y. for preparation of the manuscript); the National Key R&D Program of China (grant no. 2022YFE0209400 to L.Y. for study design and data analysis); the Tsinghua University Initiative Scientific Research Program (grant no. 2021Z11GHX002 to L.Y. for study design and data analysis); the National Key Scientific and Technological Infrastructure Project ‘Earth System Science Numerical Simulator Facility’ (EarthLab to L.Y. for study design and data analysis); the Chinese National High-end Foreign Expert Recruitment Plan to G.S.; and the Alexander von Humboldt Foundation to G.S. for study design and data analysis.","status":"public","oa":1,"publication_identifier":{"issn":["1078-8956"],"eissn":["1546-170X"]},"citation":{"apa":"Xu, J., Liu, N., Polemiti, E., Garcia-Mondragon, L., Tang, J., Liu, X., … Ogoh, G. (2023). Effects of urban living environments on mental health in adults. <i>Nature Medicine</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41591-023-02365-w\">https://doi.org/10.1038/s41591-023-02365-w</a>","ieee":"J. Xu <i>et al.</i>, “Effects of urban living environments on mental health in adults,” <i>Nature Medicine</i>, vol. 29. Springer Nature, pp. 1456–1467, 2023.","chicago":"Xu, Jiayuan, Nana Liu, Elli Polemiti, Liliana Garcia-Mondragon, Jie Tang, Xiaoxuan Liu, Tristram Lett, et al. “Effects of Urban Living Environments on Mental Health in Adults.” <i>Nature Medicine</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s41591-023-02365-w\">https://doi.org/10.1038/s41591-023-02365-w</a>.","mla":"Xu, Jiayuan, et al. “Effects of Urban Living Environments on Mental Health in Adults.” <i>Nature Medicine</i>, vol. 29, Springer Nature, 2023, pp. 1456–67, doi:<a href=\"https://doi.org/10.1038/s41591-023-02365-w\">10.1038/s41591-023-02365-w</a>.","ista":"Xu J, Liu N, Polemiti E, Garcia-Mondragon L, Tang J, Liu X, Lett T, Yu L, Nöthen MM, Feng J, Yu C, Marquand A, Schumann G, Walter H, Heinz A, Ralser M, Twardziok S, Vaidya N, Serin E, Jentsch M, Hitchen E, Eils R, Taron UH, Schütz T, Schepanski K, Banks J, Banaschewski T, Jansone K, Christmann N, Meyer-Lindenberg A, Tost H, Holz N, Schwarz E, Stringaris A, Neidhart M, Nees F, Siehl S, A. Andreassen O, T. Westlye L, Van Der Meer D, Fernandez S, Kjelkenes R, Ask H, Rapp M, Tschorn M, Böttger SJ, Novarino G, Marr L, Slater M, Viapiana GF, Orosa FE, Gallego J, Pastor A, Forstner A, Hoffmann P, M. Nöthen M, J. Forstner A, Claus I, Miller A, Heilmann-Heimbach S, Sommer P, Boye M, Wilbertz J, Schmitt K, Jirsa V, Petkoski S, Pitel S, Otten L, Athanasiadis AP, Pearmund C, Spanlang B, Alvarez E, Sanchez M, Giner A, Hese S, Renner P, Jia T, Gong Y, Xia Y, Chang X, Calhoun V, Liu J, Thompson P, Clinton N, Desrivieres S, H. Young A, Stahl B, Ogoh G. 2023. Effects of urban living environments on mental health in adults. Nature Medicine. 29, 1456–1467.","short":"J. Xu, N. Liu, E. Polemiti, L. Garcia-Mondragon, J. Tang, X. Liu, T. Lett, L. Yu, M.M. Nöthen, J. Feng, C. Yu, A. Marquand, G. Schumann, H. Walter, A. Heinz, M. Ralser, S. Twardziok, N. Vaidya, E. Serin, M. Jentsch, E. Hitchen, R. Eils, U.H. Taron, T. Schütz, K. Schepanski, J. Banks, T. Banaschewski, K. Jansone, N. Christmann, A. Meyer-Lindenberg, H. Tost, N. Holz, E. Schwarz, A. Stringaris, M. Neidhart, F. Nees, S. Siehl, O. A. Andreassen, L. T. Westlye, D. Van Der Meer, S. Fernandez, R. Kjelkenes, H. Ask, M. Rapp, M. Tschorn, S.J. Böttger, G. Novarino, L. Marr, M. Slater, G.F. Viapiana, F.E. Orosa, J. Gallego, A. Pastor, A. Forstner, P. Hoffmann, M. M. Nöthen, A. J. Forstner, I. Claus, A. Miller, S. Heilmann-Heimbach, P. Sommer, M. Boye, J. Wilbertz, K. Schmitt, V. Jirsa, S. Petkoski, S. Pitel, L. Otten, A.P. Athanasiadis, C. Pearmund, B. Spanlang, E. Alvarez, M. Sanchez, A. Giner, S. Hese, P. Renner, T. Jia, Y. Gong, Y. Xia, X. Chang, V. Calhoun, J. Liu, P. Thompson, N. Clinton, S. Desrivieres, A. H. Young, B. Stahl, G. Ogoh, Nature Medicine 29 (2023) 1456–1467.","ama":"Xu J, Liu N, Polemiti E, et al. Effects of urban living environments on mental health in adults. <i>Nature Medicine</i>. 2023;29:1456-1467. doi:<a href=\"https://doi.org/10.1038/s41591-023-02365-w\">10.1038/s41591-023-02365-w</a>"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","volume":29,"page":"1456-1467","has_accepted_license":"1","year":"2023","_id":"13168","article_processing_charge":"No","date_updated":"2023-12-13T11:25:55Z","doi":"10.1038/s41591-023-02365-w","author":[{"full_name":"Xu, Jiayuan","first_name":"Jiayuan","last_name":"Xu"},{"full_name":"Liu, Nana","first_name":"Nana","last_name":"Liu"},{"last_name":"Polemiti","first_name":"Elli","full_name":"Polemiti, Elli"},{"full_name":"Garcia-Mondragon, Liliana","first_name":"Liliana","last_name":"Garcia-Mondragon"},{"first_name":"Jie","last_name":"Tang","full_name":"Tang, Jie"},{"first_name":"Xiaoxuan","last_name":"Liu","full_name":"Liu, Xiaoxuan"},{"first_name":"Tristram","last_name":"Lett","full_name":"Lett, Tristram"},{"last_name":"Yu","first_name":"Le","full_name":"Yu, Le"},{"first_name":"Markus M.","last_name":"Nöthen","full_name":"Nöthen, Markus M."},{"first_name":"Jianfeng","last_name":"Feng","full_name":"Feng, Jianfeng"},{"first_name":"Chunshui","last_name":"Yu","full_name":"Yu, Chunshui"},{"first_name":"Andre","last_name":"Marquand","full_name":"Marquand, Andre"},{"full_name":"Schumann, Gunter","last_name":"Schumann","first_name":"Gunter"},{"first_name":"Henrik","last_name":"Walter","full_name":"Walter, Henrik"},{"full_name":"Heinz, Andreas","first_name":"Andreas","last_name":"Heinz"},{"last_name":"Ralser","first_name":"Markus","full_name":"Ralser, Markus"},{"last_name":"Twardziok","first_name":"Sven","full_name":"Twardziok, Sven"},{"full_name":"Vaidya, Nilakshi","first_name":"Nilakshi","last_name":"Vaidya"},{"first_name":"Emin","last_name":"Serin","full_name":"Serin, Emin"},{"full_name":"Jentsch, Marcel","first_name":"Marcel","last_name":"Jentsch"},{"first_name":"Esther","last_name":"Hitchen","full_name":"Hitchen, Esther"},{"full_name":"Eils, Roland","last_name":"Eils","first_name":"Roland"},{"full_name":"Taron, Ulrike Helene","last_name":"Taron","first_name":"Ulrike Helene"},{"first_name":"Tatjana","last_name":"Schütz","full_name":"Schütz, Tatjana"},{"first_name":"Kerstin","last_name":"Schepanski","full_name":"Schepanski, Kerstin"},{"full_name":"Banks, Jamie","first_name":"Jamie","last_name":"Banks"},{"last_name":"Banaschewski","first_name":"Tobias","full_name":"Banaschewski, Tobias"},{"full_name":"Jansone, Karina","last_name":"Jansone","first_name":"Karina"},{"first_name":"Nina","last_name":"Christmann","full_name":"Christmann, Nina"},{"first_name":"Andreas","last_name":"Meyer-Lindenberg","full_name":"Meyer-Lindenberg, Andreas"},{"first_name":"Heike","last_name":"Tost","full_name":"Tost, Heike"},{"first_name":"Nathalie","last_name":"Holz","full_name":"Holz, Nathalie"},{"first_name":"Emanuel","last_name":"Schwarz","full_name":"Schwarz, Emanuel"},{"full_name":"Stringaris, Argyris","first_name":"Argyris","last_name":"Stringaris"},{"last_name":"Neidhart","first_name":"Maja","full_name":"Neidhart, Maja"},{"full_name":"Nees, Frauke","first_name":"Frauke","last_name":"Nees"},{"full_name":"Siehl, Sebastian","last_name":"Siehl","first_name":"Sebastian"},{"full_name":"A. Andreassen, Ole","last_name":"A. Andreassen","first_name":"Ole"},{"last_name":"T. Westlye","first_name":"Lars","full_name":"T. Westlye, Lars"},{"first_name":"Dennis","last_name":"Van Der Meer","full_name":"Van Der Meer, Dennis"},{"full_name":"Fernandez, Sara","first_name":"Sara","last_name":"Fernandez"},{"first_name":"Rikka","last_name":"Kjelkenes","full_name":"Kjelkenes, Rikka"},{"last_name":"Ask","first_name":"Helga","full_name":"Ask, Helga"},{"full_name":"Rapp, Michael","first_name":"Michael","last_name":"Rapp"},{"last_name":"Tschorn","first_name":"Mira","full_name":"Tschorn, Mira"},{"full_name":"Böttger, Sarah Jane","first_name":"Sarah Jane","last_name":"Böttger"},{"first_name":"Gaia","orcid":"0000-0002-7673-7178","last_name":"Novarino","full_name":"Novarino, Gaia","id":"3E57A680-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Lena","last_name":"Marr","full_name":"Marr, Lena","id":"4406F586-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Slater, Mel","first_name":"Mel","last_name":"Slater"},{"first_name":"Guillem Feixas","last_name":"Viapiana","full_name":"Viapiana, Guillem Feixas"},{"full_name":"Orosa, Francisco Eiroa","last_name":"Orosa","first_name":"Francisco Eiroa"},{"full_name":"Gallego, Jaime","first_name":"Jaime","last_name":"Gallego"},{"first_name":"Alvaro","last_name":"Pastor","full_name":"Pastor, Alvaro"},{"last_name":"Forstner","first_name":"Andreas","full_name":"Forstner, Andreas"},{"full_name":"Hoffmann, Per","first_name":"Per","last_name":"Hoffmann"},{"full_name":"M. Nöthen, Markus","first_name":"Markus","last_name":"M. Nöthen"},{"first_name":"Andreas","last_name":"J. Forstner","full_name":"J. Forstner, Andreas"},{"full_name":"Claus, Isabelle","first_name":"Isabelle","last_name":"Claus"},{"full_name":"Miller, Abbi","last_name":"Miller","first_name":"Abbi"},{"last_name":"Heilmann-Heimbach","first_name":"Stefanie","full_name":"Heilmann-Heimbach, Stefanie"},{"first_name":"Peter","last_name":"Sommer","full_name":"Sommer, Peter"},{"full_name":"Boye, Mona","last_name":"Boye","first_name":"Mona"},{"full_name":"Wilbertz, Johannes","first_name":"Johannes","last_name":"Wilbertz"},{"full_name":"Schmitt, Karen","first_name":"Karen","last_name":"Schmitt"},{"full_name":"Jirsa, Viktor","last_name":"Jirsa","first_name":"Viktor"},{"last_name":"Petkoski","first_name":"Spase","full_name":"Petkoski, Spase"},{"full_name":"Pitel, Séverine","first_name":"Séverine","last_name":"Pitel"},{"full_name":"Otten, Lisa","first_name":"Lisa","last_name":"Otten"},{"full_name":"Athanasiadis, Anastasios Polykarpos","first_name":"Anastasios Polykarpos","last_name":"Athanasiadis"},{"full_name":"Pearmund, Charlie","last_name":"Pearmund","first_name":"Charlie"},{"full_name":"Spanlang, Bernhard","first_name":"Bernhard","last_name":"Spanlang"},{"full_name":"Alvarez, Elena","last_name":"Alvarez","first_name":"Elena"},{"last_name":"Sanchez","first_name":"Mavi","full_name":"Sanchez, Mavi"},{"last_name":"Giner","first_name":"Arantxa","full_name":"Giner, Arantxa"},{"first_name":"Sören","last_name":"Hese","full_name":"Hese, Sören"},{"full_name":"Renner, Paul","first_name":"Paul","last_name":"Renner"},{"full_name":"Jia, Tianye","last_name":"Jia","first_name":"Tianye"},{"full_name":"Gong, Yanting","first_name":"Yanting","last_name":"Gong"},{"full_name":"Xia, Yunman","last_name":"Xia","first_name":"Yunman"},{"first_name":"Xiao","last_name":"Chang","full_name":"Chang, Xiao"},{"full_name":"Calhoun, Vince","first_name":"Vince","last_name":"Calhoun"},{"last_name":"Liu","first_name":"Jingyu","full_name":"Liu, Jingyu"},{"full_name":"Thompson, Paul","first_name":"Paul","last_name":"Thompson"},{"last_name":"Clinton","first_name":"Nicholas","full_name":"Clinton, Nicholas"},{"last_name":"Desrivieres","first_name":"Sylvane","full_name":"Desrivieres, Sylvane"},{"full_name":"H. Young, Allan","last_name":"H. 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Transition from tonic to phasic neurotransmitter release by presynaptic GABAB receptor activation in medial habenula terminals. 2023. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:13173\">10.15479/AT:ISTA:13173</a>","ista":"Shigemoto R. 2023. Transition from tonic to phasic neurotransmitter release by presynaptic GABAB receptor activation in medial habenula terminals, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:13173\">10.15479/AT:ISTA:13173</a>.","mla":"Shigemoto, Ryuichi. <i>Transition from Tonic to Phasic Neurotransmitter Release by Presynaptic GABAB Receptor Activation in Medial Habenula Terminals</i>. Institute of Science and Technology Austria, 2023, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:13173\">10.15479/AT:ISTA:13173</a>.","short":"R. Shigemoto, (2023).","ieee":"R. Shigemoto, “Transition from tonic to phasic neurotransmitter release by presynaptic GABAB receptor activation in medial habenula terminals.” Institute of Science and Technology Austria, 2023.","chicago":"Shigemoto, Ryuichi. “Transition from Tonic to Phasic Neurotransmitter Release by Presynaptic GABAB Receptor Activation in Medial Habenula Terminals.” Institute of Science and Technology Austria, 2023. <a href=\"https://doi.org/10.15479/AT:ISTA:13173\">https://doi.org/10.15479/AT:ISTA:13173</a>.","apa":"Shigemoto, R. (2023). Transition from tonic to phasic neurotransmitter release by presynaptic GABAB receptor activation in medial habenula terminals. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:13173\">https://doi.org/10.15479/AT:ISTA:13173</a>"},"month":"07","status":"public","oa":1,"day":"29","ddc":["571"],"oa_version":"Published Version","tmp":{"short":"CC BY-NC (4.0)","image":"/images/cc_by_nc.png","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)"},"date_created":"2023-06-29T13:16:42Z","file_date_updated":"2024-02-06T07:21:43Z","department":[{"_id":"RySh"}],"title":"Transition from tonic to phasic neurotransmitter release by presynaptic GABAB receptor activation in medial habenula terminals","publisher":"Institute of Science and Technology Austria","abstract":[{"lang":"eng","text":"GABAB receptor (GBR) activation inhibits neurotransmitter release in axon terminals in the brain, except in medial habenula (MHb) terminals, which show robust potentiation. However, mechanisms underlying this enigmatic potentiation remain elusive. Here, we report that GBR activation on MHb terminals induces an activity-dependent transition from a facilitating, tonic to a depressing, phasic neurotransmitter release mode. This transition is accompanied by a 4.1-fold increase in readily releasable vesicle pool (RRP) size and a 3.5-fold increase of docked synaptic vesicles at the presynaptic active zone (AZ). Strikingly, tonic and phasic release exhibit distinct coupling distances and are selectively affected by deletion of synaptoporin (SPO) and Ca2+-dependent activator protein for secretion 2 (CAPS2), respectively. SPO modulates augmentation, the short-term plasticity associated with tonic release, and CAPS2 retains the increased RRP for initial responses in phasic response trains. Double pre-embedding immunolabeling confirmed the co-localization of CAPS2 and SPO inside the same terminal. The cytosolic protein CAPS2 showed a synaptic vesicle (SV)-associated distribution similar to the vesicular transmembrane protein SPO. A newly developed “Flash and Freeze-fracture” method revealed the release of SPO-associated vesicles in both tonic and phasic modes and activity-dependent recruitment of CAPS2 to the AZ during phasic release, which lasted several minutes. Overall, these results indicate that GBR activation translocates CAPS2 to the AZ along with the fusion of CAPS2-associated SVs, contributing to a persistent RRP increase. Thus, we discovered structural and molecular mechanisms underlying tonic and phasic neurotransmitter release and their transition by GBR activation in MHb terminals."}],"keyword":["medial habenula","GABAB receptor","vesicle release","Flash and Freeze","Flash and Freeze-fracture"],"author":[{"first_name":"Ryuichi","orcid":"0000-0001-8761-9444","last_name":"Shigemoto","full_name":"Shigemoto, Ryuichi","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2023-07-29T00:00:00Z","doi":"10.15479/AT:ISTA:13173","date_updated":"2024-02-21T12:19:26Z","article_processing_charge":"No"},{"page":"202","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","type":"dissertation","supervisor":[{"orcid":"0000-0001-8112-028X","last_name":"Fink","first_name":"Johannes M","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","full_name":"Fink, Johannes M"}],"_id":"13175","has_accepted_license":"1","year":"2023","status":"public","oa":1,"citation":{"ama":"Sahu R. Cavity quantum electrooptics. 2023. doi:<a href=\"https://doi.org/10.15479/at:ista:13175\">10.15479/at:ista:13175</a>","ista":"Sahu R. 2023. Cavity quantum electrooptics. Institute of Science and Technology Austria.","mla":"Sahu, Rishabh. <i>Cavity Quantum Electrooptics</i>. Institute of Science and Technology Austria, 2023, doi:<a href=\"https://doi.org/10.15479/at:ista:13175\">10.15479/at:ista:13175</a>.","short":"R. Sahu, Cavity Quantum Electrooptics, Institute of Science and Technology Austria, 2023.","ieee":"R. Sahu, “Cavity quantum electrooptics,” Institute of Science and Technology Austria, 2023.","chicago":"Sahu, Rishabh. “Cavity Quantum Electrooptics.” Institute of Science and Technology Austria, 2023. <a href=\"https://doi.org/10.15479/at:ista:13175\">https://doi.org/10.15479/at:ista:13175</a>.","apa":"Sahu, R. (2023). <i>Cavity quantum electrooptics</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:13175\">https://doi.org/10.15479/at:ista:13175</a>"},"publication_identifier":{"isbn":["978-3-99078-030-5"],"issn":["2663 - 337X"]},"title":"Cavity quantum electrooptics","department":[{"_id":"GradSch"},{"_id":"JoFi"}],"publisher":"Institute of Science and Technology Austria","ec_funded":1,"date_created":"2023-06-30T08:07:43Z","oa_version":"Published Version","abstract":[{"text":"About a 100 years ago, we discovered that our universe is inherently noisy, that is, measuring any physical quantity with a precision beyond a certain point is not possible because of an omnipresent inherent noise. We call this - the quantum noise. Certain physical processes allow this quantum noise to get correlated in conjugate physical variables. These quantum correlations can be used to go beyond the potential of our inherently noisy universe and obtain a quantum advantage over the classical applications. \r\n\r\nQuantum noise being inherent also means that, at the fundamental level, the physical quantities are not well defined and therefore, objects can stay in multiple states at the same time. For example, the position of a particle not being well defined means that the particle is in multiple positions at the same time. About 4 decades ago, we started exploring the possibility of using objects which can be in multiple states at the same time to increase the dimensionality in computation. Thus, the field of quantum computing was born. We discovered that using quantum entanglement, a property closely related to quantum correlations, can be used to speed up computation of certain problems, such as factorisation of large numbers, faster than any known classical algorithm. Thus began the pursuit to make quantum computers a reality. \r\n\r\nTill date, we have explored quantum control over many physical systems including photons, spins, atoms, ions and even simple circuits made up of superconducting material. However, there persists one ubiquitous theme. The more readily a system interacts with an external field or matter, the more easily we can control it. But this also means that such a system can easily interact with a noisy environment and quickly lose its coherence. Consequently, such systems like electron spins need to be protected from the environment to ensure the longevity of their coherence. Other systems like nuclear spins are naturally protected as they do not interact easily with the environment. But, due to the same reason, it is harder to interact with such systems. \r\n\r\nAfter decades of experimentation with various systems, we are convinced that no one type of quantum system would be the best for all the quantum applications. We would need hybrid systems which are all interconnected - much like the current internet where all sorts of devices can all talk to each other - but now for quantum devices. A quantum internet. \r\n\r\nOptical photons are the best contenders to carry information for the quantum internet. They can carry quantum information cheaply and without much loss - the same reasons which has made them the backbone of our current internet. Following this direction, many systems, like trapped ions, have already demonstrated successful quantum links over a large distances using optical photons. However, some of the most promising contenders for quantum computing which are based on microwave frequencies have been left behind. This is because high energy optical photons can adversely affect fragile low-energy microwave systems. \r\n\r\nIn this thesis, we present substantial progress on this missing quantum link between microwave and optics using electrooptical nonlinearities in lithium niobate. The nonlinearities are enhanced by using resonant cavities for all the involved modes leading to observation of strong direct coupling between optical and microwave frequencies. With this strong coupling we are not only able to achieve almost 100\\% internal conversion efficiency with low added noise, thus presenting a quantum-enabled transducer, but also we are able to observe novel effects such as cooling of a microwave mode using optics. The strong coupling regime also leads to direct observation of dynamical backaction effect between microwave and optical frequencies which are studied in detail here. Finally, we also report first observation of microwave-optics entanglement in form of two-mode squeezed vacuum squeezed 0.7dB below vacuum level. \r\nWith this new bridge between microwave and optics, the microwave-based quantum technologies can finally be a part of a quantum network which is based on optical photons - putting us one step closer to a future with quantum internet. ","lang":"eng"}],"file":[{"date_created":"2023-06-30T08:17:25Z","success":1,"content_type":"application/pdf","creator":"cchlebak","access_level":"open_access","relation":"main_file","checksum":"7d03f1a5a5258ee43dfc3323dea4e08f","file_name":"thesis_pdfa.pdf","file_size":18688376,"file_id":"13176","date_updated":"2023-06-30T08:17:25Z"},{"file_id":"13196","date_updated":"2023-07-06T11:35:15Z","file_size":37847025,"checksum":"c3b45317ae58e0527533f98c202d81b7","file_name":"thesis.zip","relation":"source_file","access_level":"closed","creator":"cchlebak","content_type":"application/x-zip-compressed","date_created":"2023-07-06T11:35:15Z"}],"publication_status":"published","ddc":["537","535","539"],"day":"05","month":"05","project":[{"call_identifier":"H2020","grant_number":"758053","name":"A Fiber Optic Transceiver for Superconducting Qubits","_id":"26336814-B435-11E9-9278-68D0E5697425"},{"call_identifier":"H2020","grant_number":"899354","name":"Quantum Local Area Networks with Superconducting Qubits","_id":"9B868D20-BA93-11EA-9121-9846C619BF3A"},{"_id":"bdb108fd-d553-11ed-ba76-83dc74a9864f","name":"QUANTUM INFORMATION SYSTEMS BEYOND CLASSICAL CAPABILITIES / P5- Integration of Superconducting Quantum Circuits"}],"language":[{"iso":"eng"}],"file_date_updated":"2023-07-06T11:35:15Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","short":"CC BY-NC-SA (4.0)","image":"/images/cc_by_nc_sa.png"},"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"SSU"},{"_id":"NanoFab"}],"author":[{"first_name":"Rishabh","orcid":"0000-0001-6264-2162","last_name":"Sahu","full_name":"Sahu, Rishabh","id":"47D26E34-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2023-05-05T00:00:00Z","article_processing_charge":"No","date_updated":"2024-10-29T09:11:06Z","alternative_title":["ISTA Thesis"],"doi":"10.15479/at:ista:13175","related_material":{"record":[{"status":"public","relation":"old_edition","id":"12900"},{"id":"9114","relation":"part_of_dissertation","status":"public"},{"status":"public","relation":"part_of_dissertation","id":"10924"}]},"keyword":["quantum optics","electrooptics","quantum networks","quantum communication","transduction"],"degree_awarded":"PhD"}]