[{"article_processing_charge":"No","language":[{"iso":"eng"}],"article_type":"original","publisher":"Copernicus Publications","title":"Glacier runoff variations since 1955 in the Maipo River basin, in the semiarid Andes of central Chile","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"full_name":"Ayala, Álvaro","first_name":"Álvaro","last_name":"Ayala"},{"first_name":"David","last_name":"Farías-Barahona","full_name":"Farías-Barahona, David"},{"first_name":"Matthias","last_name":"Huss","full_name":"Huss, Matthias"},{"full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"},{"full_name":"McPhee, James","first_name":"James","last_name":"McPhee"},{"first_name":"Daniel","last_name":"Farinotti","full_name":"Farinotti, Daniel"}],"publication_status":"published","citation":{"chicago":"Ayala, Álvaro, David Farías-Barahona, Matthias Huss, Francesca Pellicciotti, James McPhee, and Daniel Farinotti. “Glacier Runoff Variations since 1955 in the Maipo River Basin, in the Semiarid Andes of Central Chile.” The Cryosphere. Copernicus Publications, 2020. https://doi.org/10.5194/tc-14-2005-2020.","ama":"Ayala Á, Farías-Barahona D, Huss M, Pellicciotti F, McPhee J, Farinotti D. Glacier runoff variations since 1955 in the Maipo River basin, in the semiarid Andes of central Chile. The Cryosphere. 2020;14(6):2005-2027. doi:10.5194/tc-14-2005-2020","ieee":"Á. Ayala, D. Farías-Barahona, M. Huss, F. Pellicciotti, J. McPhee, and D. Farinotti, “Glacier runoff variations since 1955 in the Maipo River basin, in the semiarid Andes of central Chile,” The Cryosphere, vol. 14, no. 6. Copernicus Publications, pp. 2005–2027, 2020.","short":"Á. Ayala, D. Farías-Barahona, M. Huss, F. Pellicciotti, J. McPhee, D. Farinotti, The Cryosphere 14 (2020) 2005–2027.","ista":"Ayala Á, Farías-Barahona D, Huss M, Pellicciotti F, McPhee J, Farinotti D. 2020. Glacier runoff variations since 1955 in the Maipo River basin, in the semiarid Andes of central Chile. The Cryosphere. 14(6), 2005–2027.","mla":"Ayala, Álvaro, et al. “Glacier Runoff Variations since 1955 in the Maipo River Basin, in the Semiarid Andes of Central Chile.” The Cryosphere, vol. 14, no. 6, Copernicus Publications, 2020, pp. 2005–27, doi:10.5194/tc-14-2005-2020.","apa":"Ayala, Á., Farías-Barahona, D., Huss, M., Pellicciotti, F., McPhee, J., & Farinotti, D. (2020). Glacier runoff variations since 1955 in the Maipo River basin, in the semiarid Andes of central Chile. The Cryosphere. Copernicus Publications. https://doi.org/10.5194/tc-14-2005-2020"},"extern":"1","publication_identifier":{"issn":["1994-0424"]},"type":"journal_article","scopus_import":"1","abstract":[{"text":"As glaciers adjust their size in response to climate variations, long-term changes in meltwater production can be expected, affecting the local availability of water resources. We investigate glacier runoff in the period 1955–2016 in the Maipo River basin (4843 km2, 33.0–34.3∘ S, 69.8–70.5∘ W), in the semiarid Andes of Chile. The basin contains more than 800 glaciers, which cover 378 km2 in total (inventoried in 2000). We model the mass balance and runoff contribution of 26 glaciers with the physically oriented and fully distributed TOPKAPI (Topographic Kinematic Approximation and Integration)-ETH glacio-hydrological model and extrapolate the results to the entire basin. TOPKAPI-ETH is run at a daily time step using several glaciological and meteorological datasets, and its results are evaluated against streamflow records, remotely sensed snow cover, and geodetic mass balances for the periods 1955–2000 and 2000–2013. Results show that in 1955–2016 glacier mass balance had a general decreasing trend as a basin average but also had differences between the main sub-catchments. Glacier volume decreased by one-fifth (from 18.6±4.5 to 14.9±2.9 km3). Runoff from the initially glacierized areas was 177±25 mm yr−1 (16±7 % of the total contributions to the basin), but it shows a decreasing sequence of maxima, which can be linked to the interplay between a decrease in precipitation since the 1980s and the reduction of ice melt. Glaciers in the Maipo River basin will continue retreating because they are not in equilibrium with the current climate. In a hypothetical constant climate scenario, glacier volume would reduce to 81±38 % of the year 2000 volume, and glacier runoff would be 78±30 % of the 1955–2016 average. This would considerably decrease the drought mitigation capacity of the basin.","lang":"eng"}],"_id":"12596","quality_controlled":"1","page":"2005-2027","year":"2020","month":"06","intvolume":" 14","date_published":"2020-06-24T00:00:00Z","date_updated":"2023-02-28T12:32:31Z","keyword":["Earth-Surface Processes","Water Science and Technology"],"issue":"6","oa":1,"main_file_link":[{"url":"https://doi.org/10.5194/tc-14-2005-2020","open_access":"1"}],"doi":"10.5194/tc-14-2005-2020","publication":"The Cryosphere","oa_version":"Published Version","volume":14,"date_created":"2023-02-20T08:12:36Z","day":"24","status":"public"},{"day":"01","status":"public","date_created":"2023-02-20T08:12:42Z","volume":66,"oa_version":"Published Version","main_file_link":[{"url":"https://doi.org/10.1017/jog.2020.12","open_access":"1"}],"doi":"10.1017/jog.2020.12","publication":"Journal of Glaciology","issue":"257","oa":1,"date_updated":"2023-02-28T12:28:45Z","keyword":["Earth-Surface Processes"],"month":"06","intvolume":" 66","date_published":"2020-06-01T00:00:00Z","year":"2020","page":"386-400","quality_controlled":"1","_id":"12597","type":"journal_article","abstract":[{"lang":"eng","text":"We examine the spatial patterns of near-surface air temperature (Ta) over a melting glacier using a multi-annual dataset from McCall Glacier, Alaska. The dataset consists of a 10-year (2005–2014) meteorological record along the glacier centreline up to an upper glacier cirque, spanning an elevation difference of 900 m. We test the validity of on-glacier linear lapse rates, and a model that calculates Ta based on the influence of katabatic winds and other heat sources along the glacier flow line. During the coldest hours of each summer (10% of time), average lapse rates across the entire glacier range from −4.7 to −6.7°C km−1, with a strong relationship between Ta and elevation (R2 > 0.7). During warm conditions, Ta shows more complex, non-linear patterns that are better explained by the flow line-dependent model, reducing errors by up to 0.5°C compared with linear lapse rates, although more uncertainty might be associated with these observations due to occasionally poor sensor ventilation. We conclude that Ta spatial distribution can vary significantly from year to year, and from one glacier section to another. Importantly, extrapolations using linear lapse rates from the ablation zone might lead to large underestimations of Ta on the upper glacier areas."}],"scopus_import":"1","extern":"1","publication_identifier":{"issn":["0022-1430"],"eissn":["1727-5652"]},"citation":{"ama":"Troxler P, Ayala Á, Shaw TE, Nolan M, Brock BW, Pellicciotti F. Modelling spatial patterns of near-surface air temperature over a decade of melt seasons on McCall Glacier, Alaska. Journal of Glaciology. 2020;66(257):386-400. doi:10.1017/jog.2020.12","ista":"Troxler P, Ayala Á, Shaw TE, Nolan M, Brock BW, Pellicciotti F. 2020. Modelling spatial patterns of near-surface air temperature over a decade of melt seasons on McCall Glacier, Alaska. Journal of Glaciology. 66(257), 386–400.","ieee":"P. Troxler, Á. Ayala, T. E. Shaw, M. Nolan, B. W. Brock, and F. Pellicciotti, “Modelling spatial patterns of near-surface air temperature over a decade of melt seasons on McCall Glacier, Alaska,” Journal of Glaciology, vol. 66, no. 257. Cambridge University Press, pp. 386–400, 2020.","short":"P. Troxler, Á. Ayala, T.E. Shaw, M. Nolan, B.W. Brock, F. Pellicciotti, Journal of Glaciology 66 (2020) 386–400.","chicago":"Troxler, Patrick, Álvaro Ayala, Thomas E. Shaw, Matt Nolan, Ben W. Brock, and Francesca Pellicciotti. “Modelling Spatial Patterns of Near-Surface Air Temperature over a Decade of Melt Seasons on McCall Glacier, Alaska.” Journal of Glaciology. Cambridge University Press, 2020. https://doi.org/10.1017/jog.2020.12.","apa":"Troxler, P., Ayala, Á., Shaw, T. E., Nolan, M., Brock, B. W., & Pellicciotti, F. (2020). Modelling spatial patterns of near-surface air temperature over a decade of melt seasons on McCall Glacier, Alaska. Journal of Glaciology. Cambridge University Press. https://doi.org/10.1017/jog.2020.12","mla":"Troxler, Patrick, et al. “Modelling Spatial Patterns of Near-Surface Air Temperature over a Decade of Melt Seasons on McCall Glacier, Alaska.” Journal of Glaciology, vol. 66, no. 257, Cambridge University Press, 2020, pp. 386–400, doi:10.1017/jog.2020.12."},"publication_status":"published","title":"Modelling spatial patterns of near-surface air temperature over a decade of melt seasons on McCall Glacier, Alaska","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"first_name":"Patrick","last_name":"Troxler","full_name":"Troxler, Patrick"},{"full_name":"Ayala, Álvaro","first_name":"Álvaro","last_name":"Ayala"},{"full_name":"Shaw, Thomas E.","first_name":"Thomas E.","last_name":"Shaw"},{"first_name":"Matt","last_name":"Nolan","full_name":"Nolan, Matt"},{"full_name":"Brock, Ben W.","first_name":"Ben W.","last_name":"Brock"},{"first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","last_name":"Pellicciotti","full_name":"Pellicciotti, Francesca"}],"publisher":"Cambridge University Press","article_type":"original","language":[{"iso":"eng"}],"article_processing_charge":"No"},{"year":"2020","article_number":"e2019WR024880","intvolume":" 56","month":"02","date_published":"2020-02-01T00:00:00Z","issue":"2","oa":1,"date_updated":"2023-02-28T12:26:14Z","keyword":["Water Science and Technology"],"doi":"10.1029/2019wr024880","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1029/2019WR024880"}],"publication":"Water Resources Research","oa_version":"Published Version","volume":56,"status":"public","day":"01","date_created":"2023-02-20T08:12:47Z","article_processing_charge":"No","article_type":"original","language":[{"iso":"eng"}],"publisher":"American Geophysical Union","title":"Snow depth patterns in a high mountain Andean catchment from satellite optical tristereoscopic remote sensing","author":[{"first_name":"Thomas E.","last_name":"Shaw","full_name":"Shaw, Thomas E."},{"full_name":"Gascoin, Simon","first_name":"Simon","last_name":"Gascoin"},{"last_name":"Mendoza","first_name":"Pablo A.","full_name":"Mendoza, Pablo A."},{"full_name":"Pellicciotti, Francesca","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","last_name":"Pellicciotti"},{"first_name":"James","last_name":"McPhee","full_name":"McPhee, James"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","type":"journal_article","abstract":[{"text":"Obtaining detailed information about high mountain snowpacks is often limited by insufficient ground-based observations and uncertainty in the (re)distribution of solid precipitation. We utilize high-resolution optical images from Pléiades satellites to generate a snow depth map, at a spatial resolution of 4 m, for a high mountain catchment of central Chile. Results are negatively biased (median difference of −0.22 m) when compared against observations from a terrestrial Light Detection And Ranging scan, though replicate general snow depth variability well. Additionally, the Pléiades dataset is subject to data gaps (17% of total pixels), negative values for shallow snow (12%), and noise on slopes >40–50° (2%). We correct and filter the Pléiades snow depths using surface classification techniques of snow-free areas and a random forest model for data gap filling. Snow depths (with an estimated error of ~0.36 m) average 1.66 m and relate well to topographical parameters such as elevation and northness in a similar way to previous studies. However, estimations of snow depth based upon topography (TOPO) or physically based modeling (DBSM) cannot resolve localized processes (i.e., avalanching or wind scouring) that are detected by Pléiades, even when forced with locally calibrated data. Comparing these alternative model approaches to corrected Pléiades snow depths reveals total snow volume differences between −28% (DBSM) and +54% (TOPO) for the catchment and large differences across most elevation bands. Pléiades represents an important contribution to understanding snow accumulation at sparsely monitored catchments, though ideally requires a careful systematic validation procedure to identify catchment-scale biases and errors in the snow depth derivation.","lang":"eng"}],"scopus_import":"1","citation":{"ama":"Shaw TE, Gascoin S, Mendoza PA, Pellicciotti F, McPhee J. Snow depth patterns in a high mountain Andean catchment from satellite optical tristereoscopic remote sensing. Water Resources Research. 2020;56(2). doi:10.1029/2019wr024880","ieee":"T. E. Shaw, S. Gascoin, P. A. Mendoza, F. Pellicciotti, and J. McPhee, “Snow depth patterns in a high mountain Andean catchment from satellite optical tristereoscopic remote sensing,” Water Resources Research, vol. 56, no. 2. American Geophysical Union, 2020.","ista":"Shaw TE, Gascoin S, Mendoza PA, Pellicciotti F, McPhee J. 2020. Snow depth patterns in a high mountain Andean catchment from satellite optical tristereoscopic remote sensing. Water Resources Research. 56(2), e2019WR024880.","short":"T.E. Shaw, S. Gascoin, P.A. Mendoza, F. Pellicciotti, J. McPhee, Water Resources Research 56 (2020).","chicago":"Shaw, Thomas E., Simon Gascoin, Pablo A. Mendoza, Francesca Pellicciotti, and James McPhee. “Snow Depth Patterns in a High Mountain Andean Catchment from Satellite Optical Tristereoscopic Remote Sensing.” Water Resources Research. American Geophysical Union, 2020. https://doi.org/10.1029/2019wr024880.","apa":"Shaw, T. E., Gascoin, S., Mendoza, P. A., Pellicciotti, F., & McPhee, J. (2020). Snow depth patterns in a high mountain Andean catchment from satellite optical tristereoscopic remote sensing. Water Resources Research. American Geophysical Union. https://doi.org/10.1029/2019wr024880","mla":"Shaw, Thomas E., et al. “Snow Depth Patterns in a High Mountain Andean Catchment from Satellite Optical Tristereoscopic Remote Sensing.” Water Resources Research, vol. 56, no. 2, e2019WR024880, American Geophysical Union, 2020, doi:10.1029/2019wr024880."},"publication_identifier":{"eissn":["1944-7973"],"issn":["0043-1397"]},"extern":"1","quality_controlled":"1","_id":"12598"},{"page":"4499-4509","year":"2020","date_published":"2020-08-09T00:00:00Z","intvolume":" 2020","month":"08","oa":1,"issue":"29","keyword":["Organic Chemistry","Physical and Theoretical Chemistry"],"date_updated":"2023-05-15T07:57:14Z","publication":"European Journal of Organic Chemistry","doi":"10.1002/ejoc.202000692","main_file_link":[{"url":"https://doi.org/10.1002/ejoc.202000692","open_access":"1"}],"oa_version":"Published Version","volume":2020,"status":"public","day":"09","date_created":"2023-05-10T14:49:30Z","article_processing_charge":"No","article_type":"original","language":[{"iso":"eng"}],"publisher":"Wiley","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Phylloxanthobilins are abundant linear tetrapyrroles from chlorophyll breakdown with activities against cancer cells","author":[{"full_name":"Karg, Cornelia A.","last_name":"Karg","first_name":"Cornelia A."},{"last_name":"Wang","first_name":"Pengyu","full_name":"Wang, Pengyu"},{"id":"7499e70e-eb2c-11ec-b98b-f925648bc9d9","first_name":"Florian","last_name":"Kluibenschedl","full_name":"Kluibenschedl, Florian"},{"last_name":"Müller","first_name":"Thomas","full_name":"Müller, Thomas"},{"full_name":"Allmendinger, Lars","last_name":"Allmendinger","first_name":"Lars"},{"full_name":"Vollmar, Angelika M.","last_name":"Vollmar","first_name":"Angelika M."},{"full_name":"Moser, Simone","last_name":"Moser","first_name":"Simone"}],"publication_status":"published","abstract":[{"lang":"eng","text":"Linear tetrapyrroles, called phyllobilins, are obtained as major catabolites upon chlorophyll degradation. Primarily, colorless phylloleucobilins featuring four deconjugated pyrrole units were identified. Their yellow counterparts, phylloxanthobilins, were discovered more recently. Although the two catabolites differ only by one double bond, physicochemical properties are very distinct. Moreover, the presence of the double bond seems to enhance physiologically relevant bioactivities: in contrast to phylloleucobilin, we identified a potent anti-proliferative activity for a phylloxanthobilin, and show that this natural product induces apoptotic cell death and a cell cycle arrest in cancer cells. Interestingly, upon modifying inactive phylloleucobilin by esterification, an anti-proliferative activity can be observed that increases with the chain lengths of the alkyl esters. We provide first evidence for anti-cancer activity of phyllobilins, report a novel plant source for a phylloxanthobilin, and by using paper spray MS, show that these bioactive yellow chlorophyll catabolites are more prevalent in Nature than previously assumed."}],"scopus_import":"1","type":"journal_article","extern":"1","citation":{"ieee":"C. A. Karg et al., “Phylloxanthobilins are abundant linear tetrapyrroles from chlorophyll breakdown with activities against cancer cells,” European Journal of Organic Chemistry, vol. 2020, no. 29. Wiley, pp. 4499–4509, 2020.","short":"C.A. Karg, P. Wang, F. Kluibenschedl, T. Müller, L. Allmendinger, A.M. Vollmar, S. Moser, European Journal of Organic Chemistry 2020 (2020) 4499–4509.","ista":"Karg CA, Wang P, Kluibenschedl F, Müller T, Allmendinger L, Vollmar AM, Moser S. 2020. Phylloxanthobilins are abundant linear tetrapyrroles from chlorophyll breakdown with activities against cancer cells. European Journal of Organic Chemistry. 2020(29), 4499–4509.","ama":"Karg CA, Wang P, Kluibenschedl F, et al. Phylloxanthobilins are abundant linear tetrapyrroles from chlorophyll breakdown with activities against cancer cells. European Journal of Organic Chemistry. 2020;2020(29):4499-4509. doi:10.1002/ejoc.202000692","chicago":"Karg, Cornelia A., Pengyu Wang, Florian Kluibenschedl, Thomas Müller, Lars Allmendinger, Angelika M. Vollmar, and Simone Moser. “Phylloxanthobilins Are Abundant Linear Tetrapyrroles from Chlorophyll Breakdown with Activities against Cancer Cells.” European Journal of Organic Chemistry. Wiley, 2020. https://doi.org/10.1002/ejoc.202000692.","apa":"Karg, C. A., Wang, P., Kluibenschedl, F., Müller, T., Allmendinger, L., Vollmar, A. M., & Moser, S. (2020). Phylloxanthobilins are abundant linear tetrapyrroles from chlorophyll breakdown with activities against cancer cells. European Journal of Organic Chemistry. Wiley. https://doi.org/10.1002/ejoc.202000692","mla":"Karg, Cornelia A., et al. “Phylloxanthobilins Are Abundant Linear Tetrapyrroles from Chlorophyll Breakdown with Activities against Cancer Cells.” European Journal of Organic Chemistry, vol. 2020, no. 29, Wiley, 2020, pp. 4499–509, doi:10.1002/ejoc.202000692."},"publication_identifier":{"issn":["1434-193X","1099-0690"]},"quality_controlled":"1","_id":"12939"},{"publisher":"American Chemical Society","title":"A 3-in-1 hand-held ambient mass spectrometry interface for identification and 2D localization of chemicals on surfaces","author":[{"full_name":"Meisenbichler, Christina","last_name":"Meisenbichler","first_name":"Christina"},{"id":"7499e70e-eb2c-11ec-b98b-f925648bc9d9","first_name":"Florian","last_name":"Kluibenschedl","full_name":"Kluibenschedl, Florian"},{"full_name":"Müller, Thomas","first_name":"Thomas","last_name":"Müller"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","language":[{"iso":"eng"}],"article_type":"letter_note","extern":"1","publication_identifier":{"issn":["0003-2700","1520-6882"]},"citation":{"apa":"Meisenbichler, C., Kluibenschedl, F., & Müller, T. (2020). A 3-in-1 hand-held ambient mass spectrometry interface for identification and 2D localization of chemicals on surfaces. Analytical Chemistry. American Chemical Society. https://doi.org/10.1021/acs.analchem.0c02615","mla":"Meisenbichler, Christina, et al. “A 3-in-1 Hand-Held Ambient Mass Spectrometry Interface for Identification and 2D Localization of Chemicals on Surfaces.” Analytical Chemistry, vol. 92, no. 21, American Chemical Society, 2020, pp. 14314–18, doi:10.1021/acs.analchem.0c02615.","ama":"Meisenbichler C, Kluibenschedl F, Müller T. A 3-in-1 hand-held ambient mass spectrometry interface for identification and 2D localization of chemicals on surfaces. Analytical Chemistry. 2020;92(21):14314-14318. doi:10.1021/acs.analchem.0c02615","ieee":"C. Meisenbichler, F. Kluibenschedl, and T. Müller, “A 3-in-1 hand-held ambient mass spectrometry interface for identification and 2D localization of chemicals on surfaces,” Analytical Chemistry, vol. 92, no. 21. American Chemical Society, pp. 14314–14318, 2020.","short":"C. Meisenbichler, F. Kluibenschedl, T. Müller, Analytical Chemistry 92 (2020) 14314–14318.","ista":"Meisenbichler C, Kluibenschedl F, Müller T. 2020. A 3-in-1 hand-held ambient mass spectrometry interface for identification and 2D localization of chemicals on surfaces. Analytical Chemistry. 92(21), 14314–14318.","chicago":"Meisenbichler, Christina, Florian Kluibenschedl, and Thomas Müller. “A 3-in-1 Hand-Held Ambient Mass Spectrometry Interface for Identification and 2D Localization of Chemicals on Surfaces.” Analytical Chemistry. American Chemical Society, 2020. https://doi.org/10.1021/acs.analchem.0c02615."},"type":"journal_article","scopus_import":"1","abstract":[{"text":"Desorption electrospray ionization (DESI), easy ambient sonic-spray ionization (EASI) and low-temperature plasma (LTP) ionization are powerful ambient ionization techniques for mass spectrometry. However, every single method has its limitation in terms of polarity and molecular weight of analyte molecules. After the miniaturization of every possible component of the different ion sources, we finally were able to embed two emitters and an ion transfer tubing into a small, hand-held device. The pen-like interface is connected to the mass spectrometer and a separate control unit via a bundle of flexible tubing and cables. The novel device allows the user to ionize an extended range of chemicals by simple switching between DESI, voltage-free EASI, or LTP ionization as well as to freely move the interface over a surface of interest. A mini camera, which is mounted on the tip of the pen, magnifies the desorption area and enables a simple positioning of the pen. The interface was successfully tested using different types of chemicals, pharmaceuticals, and real life samples. Moreover, the combination of optical data from the camera module and chemical data obtained by mass analysis facilitates a novel type of imaging mass spectrometry, which we name “interactive mass spectrometry imaging (IMSI)”.","lang":"eng"}],"_id":"12940","quality_controlled":"1","publication_status":"published","month":"10","intvolume":" 92","date_published":"2020-10-16T00:00:00Z","date_updated":"2023-05-15T08:01:20Z","keyword":["Analytical Chemistry"],"issue":"21","oa":1,"page":"14314-14318","external_id":{"pmid":["33063994"]},"year":"2020","pmid":1,"volume":92,"date_created":"2023-05-10T14:50:19Z","day":"16","status":"public","doi":"10.1021/acs.analchem.0c02615","main_file_link":[{"url":"https://doi.org/10.1021/acs.analchem.0c02615","open_access":"1"}],"publication":"Analytical Chemistry","oa_version":"Published Version"},{"date_created":"2021-07-20T11:25:15Z","_id":"9699","status":"public","day":"23","citation":{"apa":"Monserrat, B., Brandenburg, J. G., Engel, E. A., & Cheng, B. (n.d.). Extracting ice phases from liquid water: Why a machine-learning water model generalizes so well. arXiv. https://doi.org/10.48550/arXiv.2006.13316","mla":"Monserrat, Bartomeu, et al. “Extracting Ice Phases from Liquid Water: Why a Machine-Learning Water Model Generalizes so Well.” ArXiv, 2006.13316, doi:10.48550/arXiv.2006.13316.","ama":"Monserrat B, Brandenburg JG, Engel EA, Cheng B. Extracting ice phases from liquid water: Why a machine-learning water model generalizes so well. arXiv. doi:10.48550/arXiv.2006.13316","ieee":"B. Monserrat, J. G. Brandenburg, E. A. Engel, and B. Cheng, “Extracting ice phases from liquid water: Why a machine-learning water model generalizes so well,” arXiv. .","short":"B. Monserrat, J.G. Brandenburg, E.A. Engel, B. Cheng, ArXiv (n.d.).","ista":"Monserrat B, Brandenburg JG, Engel EA, Cheng B. Extracting ice phases from liquid water: Why a machine-learning water model generalizes so well. arXiv, 2006.13316.","chicago":"Monserrat, Bartomeu, Jan Gerit Brandenburg, Edgar A. Engel, and Bingqing Cheng. “Extracting Ice Phases from Liquid Water: Why a Machine-Learning Water Model Generalizes so Well.” ArXiv, n.d. https://doi.org/10.48550/arXiv.2006.13316."},"extern":"1","arxiv":1,"abstract":[{"lang":"eng","text":"We investigate the structural similarities between liquid water and 53 ices, including 20 known crystalline phases. We base such similarity comparison on the local environments that consist of atoms within a certain cutoff radius of a central atom. We reveal that liquid water explores the local environments of the diverse ice phases, by directly comparing the environments in these phases using general atomic descriptors, and also by demonstrating that a machine-learning potential trained on liquid water alone can predict the densities, the lattice energies, and vibrational properties of the\r\nices. The finding that the local environments characterising the different ice phases are found in water sheds light on water phase behaviors, and rationalizes the transferability of water models between different phases."}],"type":"preprint","oa_version":"Submitted Version","publication":"arXiv","main_file_link":[{"url":"https://arxiv.org/abs/2006.13316","open_access":"1"}],"publication_status":"submitted","doi":"10.48550/arXiv.2006.13316","date_updated":"2023-05-10T10:17:48Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"title":"Extracting ice phases from liquid water: Why a machine-learning water model generalizes so well","author":[{"full_name":"Monserrat, Bartomeu","last_name":"Monserrat","first_name":"Bartomeu"},{"first_name":"Jan Gerit","last_name":"Brandenburg","full_name":"Brandenburg, Jan Gerit"},{"full_name":"Engel, Edgar A.","last_name":"Engel","first_name":"Edgar A."},{"full_name":"Cheng, Bingqing","last_name":"Cheng","orcid":"0000-0002-3584-9632","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9","first_name":"Bingqing"}],"date_published":"2020-06-23T00:00:00Z","month":"06","article_number":"2006.13316","language":[{"iso":"eng"}],"year":"2020","article_processing_charge":"No","external_id":{"arxiv":["2006.13316"]}},{"tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"_id":"9706","date_created":"2021-07-23T08:59:15Z","status":"public","day":"09","citation":{"chicago":"Hillary, Robert F., Daniel Trejo-Banos, Athanasios Kousathanas, Daniel L. McCartney, Sarah E. Harris, Anna J. Stevenson, Marion Patxot, et al. “Additional File 2 of Multi-Method Genome- and Epigenome-Wide Studies of Inflammatory Protein Levels in Healthy Older Adults.” Springer Nature, 2020. https://doi.org/10.6084/m9.figshare.12629697.v1.","ista":"Hillary RF, Trejo-Banos D, Kousathanas A, McCartney DL, Harris SE, Stevenson AJ, Patxot M, Ojavee SE, Zhang Q, Liewald DC, Ritchie CW, Evans KL, Tucker-Drob EM, Wray NR, McRae AF, Visscher PM, Deary IJ, Robinson MR, Marioni RE. 2020. Additional file 2 of multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults, Springer Nature, 10.6084/m9.figshare.12629697.v1.","short":"R.F. Hillary, D. Trejo-Banos, A. Kousathanas, D.L. McCartney, S.E. Harris, A.J. Stevenson, M. Patxot, S.E. Ojavee, Q. Zhang, D.C. Liewald, C.W. Ritchie, K.L. Evans, E.M. Tucker-Drob, N.R. Wray, A.F. McRae, P.M. Visscher, I.J. Deary, M.R. Robinson, R.E. Marioni, (2020).","ieee":"R. F. Hillary et al., “Additional file 2 of multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.” Springer Nature, 2020.","ama":"Hillary RF, Trejo-Banos D, Kousathanas A, et al. Additional file 2 of multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults. 2020. doi:10.6084/m9.figshare.12629697.v1","mla":"Hillary, Robert F., et al. Additional File 2 of Multi-Method Genome- and Epigenome-Wide Studies of Inflammatory Protein Levels in Healthy Older Adults. Springer Nature, 2020, doi:10.6084/m9.figshare.12629697.v1.","apa":"Hillary, R. F., Trejo-Banos, D., Kousathanas, A., McCartney, D. L., Harris, S. E., Stevenson, A. J., … Marioni, R. E. (2020). Additional file 2 of multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults. Springer Nature. https://doi.org/10.6084/m9.figshare.12629697.v1"},"type":"research_data_reference","abstract":[{"lang":"eng","text":"Additional file 2: Supplementary Tables. The association of pre-adjusted protein levels with biological and technical covariates. Protein levels were adjusted for age, sex, array plate and four genetic principal components (population structure) prior to analyses. Significant associations are emboldened. (Table S1). pQTLs associated with inflammatory biomarker levels from Bayesian penalised regression model (Posterior Inclusion Probability > 95%). (Table S2). All pQTLs associated with inflammatory biomarker levels from ordinary least squares regression model (P < 7.14 × 10− 10). (Table S3). Summary of lambda values relating to ordinary least squares GWAS and EWAS performed on inflammatory protein levels (n = 70) in Lothian Birth Cohort 1936 study. (Table S4). Conditionally significant pQTLs associated with inflammatory biomarker levels from ordinary least squares regression model (P < 7.14 × 10− 10). (Table S5). Comparison of variance explained by ordinary least squares and Bayesian penalised regression models for concordantly identified SNPs. (Table S6). Estimate of heritability for blood protein levels as well as proportion of variance explained attributable to different prior mixtures. (Table S7). Comparison of heritability estimates from Ahsan et al. (maximum likelihood) and Hillary et al. (Bayesian penalised regression). (Table S8). List of concordant SNPs identified by linear model and Bayesian penalised regression and whether they have been previously identified as eQTLs. (Table S9). Bayesian tests of colocalisation for cis pQTLs and cis eQTLs. (Table S10). Sherlock algorithm: Genes whose expression are putatively associated with circulating inflammatory proteins that harbour pQTLs. (Table S11). CpGs associated with inflammatory protein biomarkers as identified by Bayesian model (Bayesian model; Posterior Inclusion Probability > 95%). (Table S12). CpGs associated with inflammatory protein biomarkers as identified by linear model (limma) at P < 5.14 × 10− 10. (Table S13). CpGs associated with inflammatory protein biomarkers as identified by mixed linear model (OSCA) at P < 5.14 × 10− 10. (Table S14). Estimate of variance explained for blood protein levels by DNA methylation as well as proportion of explained attributable to different prior mixtures - BayesR+. (Table S15). Comparison of variance in protein levels explained by genome-wide DNA methylation data by mixed linear model (OSCA) and Bayesian penalised regression model (BayesR+). (Table S16). Variance in circulating inflammatory protein biomarker levels explained by common genetic and methylation data (joint and conditional estimates from BayesR+). Ordered by combined variance explained by genetic and epigenetic data - smallest to largest. Significant results from t-tests comparing distributions for variance explained by methylation or genetics alone versus combined estimate are emboldened. (Table S17). Genetic and epigenetic factors identified by BayesR+ when conditioning on all SNPs and CpGs together. (Table S18). Mendelian Randomisation analyses to assess whether proteins with concordantly identified genetic signals are causally associated with Alzheimer’s disease risk. (Table S19)."}],"related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"8133"}]},"oa_version":"Published Version","main_file_link":[{"url":"https://doi.org/10.6084/m9.figshare.12629697.v1","open_access":"1"}],"doi":"10.6084/m9.figshare.12629697.v1","date_updated":"2023-08-22T07:55:36Z","other_data_license":"CC0 + CC BY (4.0)","title":"Additional file 2 of multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults","oa":1,"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","author":[{"full_name":"Hillary, Robert F.","last_name":"Hillary","first_name":"Robert F."},{"full_name":"Trejo-Banos, Daniel","last_name":"Trejo-Banos","first_name":"Daniel"},{"first_name":"Athanasios","last_name":"Kousathanas","full_name":"Kousathanas, Athanasios"},{"last_name":"McCartney","first_name":"Daniel L.","full_name":"McCartney, Daniel L."},{"full_name":"Harris, Sarah E.","last_name":"Harris","first_name":"Sarah E."},{"first_name":"Anna J.","last_name":"Stevenson","full_name":"Stevenson, Anna J."},{"full_name":"Patxot, Marion","first_name":"Marion","last_name":"Patxot"},{"full_name":"Ojavee, Sven Erik","first_name":"Sven Erik","last_name":"Ojavee"},{"full_name":"Zhang, Qian","first_name":"Qian","last_name":"Zhang"},{"full_name":"Liewald, David C.","first_name":"David C.","last_name":"Liewald"},{"first_name":"Craig W.","last_name":"Ritchie","full_name":"Ritchie, Craig W."},{"first_name":"Kathryn L.","last_name":"Evans","full_name":"Evans, Kathryn L."},{"full_name":"Tucker-Drob, Elliot M.","last_name":"Tucker-Drob","first_name":"Elliot M."},{"last_name":"Wray","first_name":"Naomi R.","full_name":"Wray, Naomi R."},{"first_name":"Allan F. ","last_name":"McRae","full_name":"McRae, Allan F. "},{"last_name":"Visscher","first_name":"Peter M.","full_name":"Visscher, Peter M."},{"last_name":"Deary","first_name":"Ian J.","full_name":"Deary, Ian J."},{"orcid":"0000-0001-8982-8813","last_name":"Robinson","first_name":"Matthew Richard","id":"E5D42276-F5DA-11E9-8E24-6303E6697425","full_name":"Robinson, Matthew Richard"},{"full_name":"Marioni, Riccardo E. ","last_name":"Marioni","first_name":"Riccardo E. "}],"has_accepted_license":"1","month":"07","date_published":"2020-07-09T00:00:00Z","publisher":"Springer Nature","year":"2020","article_processing_charge":"No","department":[{"_id":"MaRo"}]},{"year":"2020","article_processing_charge":"No","department":[{"_id":"KiMo"}],"date_updated":"2023-08-21T07:06:48Z","oa":1,"author":[{"full_name":"Hartstein, Mate","first_name":"Mate","last_name":"Hartstein"},{"full_name":"Hsu, Yu-Te","first_name":"Yu-Te","last_name":"Hsu"},{"full_name":"Modic, Kimberly A","id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425","first_name":"Kimberly A","orcid":"0000-0001-9760-3147","last_name":"Modic"},{"first_name":"Juan","last_name":"Porras","full_name":"Porras, Juan"},{"last_name":"Loew","first_name":"Toshinao","full_name":"Loew, Toshinao"},{"full_name":"Le Tacon, Matthieu","last_name":"Le Tacon","first_name":"Matthieu"},{"last_name":"Zuo","first_name":"Huakun","full_name":"Zuo, Huakun"},{"first_name":"Jinhua","last_name":"Wang","full_name":"Wang, Jinhua"},{"last_name":"Zhu","first_name":"Zengwei","full_name":"Zhu, Zengwei"},{"first_name":"Mun","last_name":"Chan","full_name":"Chan, Mun"},{"last_name":"McDonald","first_name":"Ross","full_name":"McDonald, Ross"},{"full_name":"Lonzarich, Gilbert","last_name":"Lonzarich","first_name":"Gilbert"},{"last_name":"Keimer","first_name":"Bernhard","full_name":"Keimer, Bernhard"},{"full_name":"Sebastian, Suchitra","first_name":"Suchitra","last_name":"Sebastian"},{"first_name":"Neil","last_name":"Harrison","full_name":"Harrison, Neil"}],"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","title":"Accompanying dataset for 'Hard antinodal gap revealed by quantum oscillations in the pseudogap regime of underdoped high-Tc superconductors'","date_published":"2020-05-29T00:00:00Z","month":"05","has_accepted_license":"1","publisher":"Apollo - University of Cambridge","related_material":{"record":[{"id":"7942","relation":"used_in_publication","status":"public"}]},"oa_version":"Published Version","main_file_link":[{"url":"https://doi.org/10.17863/CAM.50169","open_access":"1"}],"doi":"10.17863/cam.50169","date_created":"2021-07-23T10:00:35Z","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"_id":"9708","status":"public","day":"29","citation":{"ama":"Hartstein M, Hsu Y-T, Modic KA, et al. Accompanying dataset for “Hard antinodal gap revealed by quantum oscillations in the pseudogap regime of underdoped high-Tc superconductors.” 2020. doi:10.17863/cam.50169","ista":"Hartstein M, Hsu Y-T, Modic KA, Porras J, Loew T, Le Tacon M, Zuo H, Wang J, Zhu Z, Chan M, McDonald R, Lonzarich G, Keimer B, Sebastian S, Harrison N. 2020. Accompanying dataset for ‘Hard antinodal gap revealed by quantum oscillations in the pseudogap regime of underdoped high-Tc superconductors’, Apollo - University of Cambridge, 10.17863/cam.50169.","short":"M. Hartstein, Y.-T. Hsu, K.A. Modic, J. Porras, T. Loew, M. Le Tacon, H. Zuo, J. Wang, Z. Zhu, M. Chan, R. McDonald, G. Lonzarich, B. Keimer, S. Sebastian, N. Harrison, (2020).","ieee":"M. Hartstein et al., “Accompanying dataset for ‘Hard antinodal gap revealed by quantum oscillations in the pseudogap regime of underdoped high-Tc superconductors.’” Apollo - University of Cambridge, 2020.","chicago":"Hartstein, Mate, Yu-Te Hsu, Kimberly A Modic, Juan Porras, Toshinao Loew, Matthieu Le Tacon, Huakun Zuo, et al. “Accompanying Dataset for ‘Hard Antinodal Gap Revealed by Quantum Oscillations in the Pseudogap Regime of Underdoped High-Tc Superconductors.’” Apollo - University of Cambridge, 2020. https://doi.org/10.17863/cam.50169.","apa":"Hartstein, M., Hsu, Y.-T., Modic, K. A., Porras, J., Loew, T., Le Tacon, M., … Harrison, N. (2020). Accompanying dataset for “Hard antinodal gap revealed by quantum oscillations in the pseudogap regime of underdoped high-Tc superconductors.” Apollo - University of Cambridge. https://doi.org/10.17863/cam.50169","mla":"Hartstein, Mate, et al. Accompanying Dataset for “Hard Antinodal Gap Revealed by Quantum Oscillations in the Pseudogap Regime of Underdoped High-Tc Superconductors.” Apollo - University of Cambridge, 2020, doi:10.17863/cam.50169."},"abstract":[{"text":"This research data supports 'Hard antinodal gap revealed by quantum oscillations in the pseudogap regime of underdoped high-Tc superconductors'. A Readme file for plotting each figure is provided.","lang":"eng"}],"type":"research_data_reference"},{"department":[{"_id":"CaHe"},{"_id":"EM-Fac"},{"_id":"Bio"}],"page":"41","article_processing_charge":"No","year":"2020","language":[{"iso":"eng"}],"acknowledgement":"We would like to thank Edouard Hannezo for discussions, Shayan Shami Pour and Daniel Capek for help with data analysis, Vanessa Barone and other members of the Heisenberg laboratory for thoughtful discussions and comments on the manuscript. We also thank Jack Merrin for preparing the microwells, and the Scientific Service Units at IST Austria, specifically Bioimaging and Electron Microscopy, and the Zebrafish Facility for continuous support. We acknowledge Hitoshi Morita for the kind gift of VinculinB-GFP plasmid. This research was supported by an ERC Advanced Grant (MECSPEC) to C.-P.H, EMBO Long Term grant (ALTF 187-2013) to M.S and IST Fellow Marie-Curie COFUND No. P_IST_EU01 to J.S.","publisher":"Cold Spring Harbor Laboratory","month":"11","date_published":"2020-11-20T00:00:00Z","oa":1,"author":[{"full_name":"Slovakova, Jana","first_name":"Jana","id":"30F3F2F0-F248-11E8-B48F-1D18A9856A87","last_name":"Slovakova"},{"full_name":"Sikora, Mateusz K","last_name":"Sikora","id":"2F74BCDE-F248-11E8-B48F-1D18A9856A87","first_name":"Mateusz K"},{"full_name":"Caballero Mancebo, Silvia","id":"2F1E1758-F248-11E8-B48F-1D18A9856A87","first_name":"Silvia","orcid":"0000-0002-5223-3346","last_name":"Caballero Mancebo"},{"full_name":"Krens, Gabriel","id":"2B819732-F248-11E8-B48F-1D18A9856A87","first_name":"Gabriel","orcid":"0000-0003-4761-5996","last_name":"Krens"},{"full_name":"Kaufmann, Walter","first_name":"Walter","id":"3F99E422-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9735-5315","last_name":"Kaufmann"},{"full_name":"Huljev, Karla","id":"44C6F6A6-F248-11E8-B48F-1D18A9856A87","first_name":"Karla","last_name":"Huljev"},{"full_name":"Heisenberg, Carl-Philipp J","last_name":"Heisenberg","orcid":"0000-0002-0912-4566","id":"39427864-F248-11E8-B48F-1D18A9856A87","first_name":"Carl-Philipp J"}],"title":"Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","acknowledged_ssus":[{"_id":"Bio"},{"_id":"EM-Fac"},{"_id":"SSU"}],"date_updated":"2024-03-25T23:30:10Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/2020.11.20.391284"}],"publication_status":"published","doi":"10.1101/2020.11.20.391284","publication":"bioRxiv","project":[{"_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme","grant_number":"291734","call_identifier":"FP7"},{"_id":"260F1432-B435-11E9-9278-68D0E5697425","name":"Interaction and feedback between cell mechanics and fate specification in vertebrate gastrulation","grant_number":"742573","call_identifier":"H2020"},{"grant_number":"187-2013","_id":"2521E28E-B435-11E9-9278-68D0E5697425","name":"Modulation of adhesion function in cell-cell contact formation by cortical tension"}],"ec_funded":1,"oa_version":"Preprint","related_material":{"record":[{"id":"10766","status":"public","relation":"later_version"},{"id":"9623","relation":"dissertation_contains","status":"public"}]},"type":"preprint","abstract":[{"text":"Tension of the actomyosin cell cortex plays a key role in determining cell-cell contact growth and size. The level of cortical tension outside of the cell-cell contact, when pulling at the contact edge, scales with the total size to which a cell-cell contact can grow1,2. Here we show in zebrafish primary germ layer progenitor cells that this monotonic relationship only applies to a narrow range of cortical tension increase, and that above a critical threshold, contact size inversely scales with cortical tension. This switch from cortical tension increasing to decreasing progenitor cell-cell contact size is caused by cortical tension promoting E-cadherin anchoring to the actomyosin cytoskeleton, thereby increasing clustering and stability of E-cadherin at the contact. Once tension-mediated E-cadherin stabilization at the contact exceeds a critical threshold level, the rate by which the contact expands in response to pulling forces from the cortex sharply drops, leading to smaller contacts at physiologically relevant timescales of contact formation. Thus, the activity of cortical tension in expanding cell-cell contact size is limited by tension stabilizing E-cadherin-actin complexes at the contact.","lang":"eng"}],"citation":{"chicago":"Slovakova, Jana, Mateusz K Sikora, Silvia Caballero Mancebo, Gabriel Krens, Walter Kaufmann, Karla Huljev, and Carl-Philipp J Heisenberg. “Tension-Dependent Stabilization of E-Cadherin Limits Cell-Cell Contact Expansion.” BioRxiv. Cold Spring Harbor Laboratory, 2020. https://doi.org/10.1101/2020.11.20.391284.","ama":"Slovakova J, Sikora MK, Caballero Mancebo S, et al. Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion. bioRxiv. 2020. doi:10.1101/2020.11.20.391284","short":"J. Slovakova, M.K. Sikora, S. Caballero Mancebo, G. Krens, W. Kaufmann, K. Huljev, C.-P.J. Heisenberg, BioRxiv (2020).","ista":"Slovakova J, Sikora MK, Caballero Mancebo S, Krens G, Kaufmann W, Huljev K, Heisenberg C-PJ. 2020. Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion. bioRxiv, 10.1101/2020.11.20.391284.","ieee":"J. Slovakova et al., “Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion,” bioRxiv. Cold Spring Harbor Laboratory, 2020.","mla":"Slovakova, Jana, et al. “Tension-Dependent Stabilization of E-Cadherin Limits Cell-Cell Contact Expansion.” BioRxiv, Cold Spring Harbor Laboratory, 2020, doi:10.1101/2020.11.20.391284.","apa":"Slovakova, J., Sikora, M. K., Caballero Mancebo, S., Krens, G., Kaufmann, W., Huljev, K., & Heisenberg, C.-P. J. (2020). Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion. bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2020.11.20.391284"},"status":"public","day":"20","date_created":"2021-07-29T11:29:50Z","_id":"9750"},{"publisher":"Public Library of Science","month":"02","date_published":"2020-02-25T00:00:00Z","author":[{"full_name":"Grah, Rok","id":"483E70DE-F248-11E8-B48F-1D18A9856A87","first_name":"Rok","last_name":"Grah","orcid":"0000-0003-2539-3560"},{"first_name":"Tamar","last_name":"Friedlander","full_name":"Friedlander, Tamar"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"title":"Maximizing crosstalk","date_updated":"2023-09-12T11:02:25Z","department":[{"_id":"GaTk"}],"article_processing_charge":"No","year":"2020","type":"research_data_reference","citation":{"apa":"Grah, R., & Friedlander, T. (2020). Maximizing crosstalk. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1007642.s002","mla":"Grah, Rok, and Tamar Friedlander. Maximizing Crosstalk. Public Library of Science, 2020, doi:10.1371/journal.pcbi.1007642.s002.","ama":"Grah R, Friedlander T. Maximizing crosstalk. 2020. doi:10.1371/journal.pcbi.1007642.s002","short":"R. Grah, T. Friedlander, (2020).","ista":"Grah R, Friedlander T. 2020. Maximizing crosstalk, Public Library of Science, 10.1371/journal.pcbi.1007642.s002.","ieee":"R. Grah and T. Friedlander, “Maximizing crosstalk.” Public Library of Science, 2020.","chicago":"Grah, Rok, and Tamar Friedlander. “Maximizing Crosstalk.” Public Library of Science, 2020. https://doi.org/10.1371/journal.pcbi.1007642.s002."},"status":"public","day":"25","_id":"9777","date_created":"2021-08-06T07:21:51Z","main_file_link":[{"url":"https://doi.org/10.1371/journal.pcbi.1007642.s002","open_access":"1"}],"doi":"10.1371/journal.pcbi.1007642.s002","oa_version":"None","related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"7569"}]}},{"abstract":[{"text":"PADREV : 4,4'-dimethoxy[1,1'-biphenyl]-2,2',5,5'-tetrol\r\nSpace Group: C 2 (5), Cell: a 24.488(16)Å b 5.981(4)Å c 3.911(3)Å, α 90° β 91.47(3)° γ 90°","lang":"eng"}],"type":"research_data_reference","citation":{"apa":"Schlemmer, W., Nothdurft, P., Petzold, A., Riess, G., Frühwirt, P., Schmallegger, M., … Spirk, S. (2020). CCDC 1991959: Experimental Crystal Structure Determination. CCDC. https://doi.org/10.5517/ccdc.csd.cc24vsrk","mla":"Schlemmer, Werner, et al. CCDC 1991959: Experimental Crystal Structure Determination. CCDC, 2020, doi:10.5517/ccdc.csd.cc24vsrk.","ama":"Schlemmer W, Nothdurft P, Petzold A, et al. CCDC 1991959: Experimental Crystal Structure Determination. 2020. doi:10.5517/ccdc.csd.cc24vsrk","ista":"Schlemmer W, Nothdurft P, Petzold A, Riess G, Frühwirt P, Schmallegger M, Gescheidt-Demner G, Fischer R, Freunberger SA, Kern W, Spirk S. 2020. CCDC 1991959: Experimental Crystal Structure Determination, CCDC, 10.5517/ccdc.csd.cc24vsrk.","ieee":"W. Schlemmer et al., “CCDC 1991959: Experimental Crystal Structure Determination.” CCDC, 2020.","short":"W. Schlemmer, P. Nothdurft, A. Petzold, G. Riess, P. Frühwirt, M. Schmallegger, G. Gescheidt-Demner, R. Fischer, S.A. Freunberger, W. Kern, S. Spirk, (2020).","chicago":"Schlemmer, Werner, Philipp Nothdurft, Alina Petzold, Gisbert Riess, Philipp Frühwirt, Max Schmallegger, Georg Gescheidt-Demner, et al. “CCDC 1991959: Experimental Crystal Structure Determination.” CCDC, 2020. https://doi.org/10.5517/ccdc.csd.cc24vsrk."},"status":"public","day":"22","_id":"9780","date_created":"2021-08-06T07:41:07Z","doi":"10.5517/ccdc.csd.cc24vsrk","main_file_link":[{"url":"https://dx.doi.org/10.5517/ccdc.csd.cc24vsrk","open_access":"1"}],"oa_version":"Published Version","related_material":{"record":[{"id":"8329","relation":"used_in_publication","status":"public"}]},"publisher":"CCDC","date_published":"2020-03-22T00:00:00Z","month":"03","title":"CCDC 1991959: Experimental Crystal Structure Determination","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","author":[{"first_name":"Werner","last_name":"Schlemmer","full_name":"Schlemmer, Werner"},{"full_name":"Nothdurft, Philipp","first_name":"Philipp","last_name":"Nothdurft"},{"first_name":"Alina","last_name":"Petzold","full_name":"Petzold, Alina"},{"last_name":"Riess","first_name":"Gisbert","full_name":"Riess, Gisbert"},{"full_name":"Frühwirt, Philipp","last_name":"Frühwirt","first_name":"Philipp"},{"last_name":"Schmallegger","first_name":"Max","full_name":"Schmallegger, Max"},{"full_name":"Gescheidt-Demner, Georg","first_name":"Georg","last_name":"Gescheidt-Demner"},{"full_name":"Fischer, Roland","first_name":"Roland","last_name":"Fischer"},{"full_name":"Freunberger, Stefan Alexander","orcid":"0000-0003-2902-5319","last_name":"Freunberger","first_name":"Stefan Alexander","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425"},{"last_name":"Kern","first_name":"Wolfgang","full_name":"Kern, Wolfgang"},{"last_name":"Spirk","first_name":"Stefan","full_name":"Spirk, Stefan"}],"oa":1,"date_updated":"2023-09-05T16:03:47Z","department":[{"_id":"StFr"}],"article_processing_charge":"No","year":"2020"},{"publication_status":"published","project":[{"name":"Analysis of quantum many-body systems","_id":"25C6DC12-B435-11E9-9278-68D0E5697425","grant_number":"694227","call_identifier":"H2020"}],"quality_controlled":"1","_id":"9781","scopus_import":"1","arxiv":1,"abstract":[{"lang":"eng","text":"We consider the Pekar functional on a ball in ℝ3. We prove uniqueness of minimizers, and a quadratic lower bound in terms of the distance to the minimizer. The latter follows from nondegeneracy of the Hessian at the minimum."}],"type":"journal_article","publication_identifier":{"eissn":["1095-7154"],"issn":["0036-1410"]},"citation":{"ieee":"D. Feliciangeli and R. Seiringer, “Uniqueness and nondegeneracy of minimizers of the Pekar functional on a ball,” SIAM Journal on Mathematical Analysis, vol. 52, no. 1. Society for Industrial & Applied Mathematics , pp. 605–622, 2020.","short":"D. Feliciangeli, R. Seiringer, SIAM Journal on Mathematical Analysis 52 (2020) 605–622.","ista":"Feliciangeli D, Seiringer R. 2020. Uniqueness and nondegeneracy of minimizers of the Pekar functional on a ball. SIAM Journal on Mathematical Analysis. 52(1), 605–622.","ama":"Feliciangeli D, Seiringer R. Uniqueness and nondegeneracy of minimizers of the Pekar functional on a ball. SIAM Journal on Mathematical Analysis. 2020;52(1):605-622. doi:10.1137/19m126284x","chicago":"Feliciangeli, Dario, and Robert Seiringer. “Uniqueness and Nondegeneracy of Minimizers of the Pekar Functional on a Ball.” SIAM Journal on Mathematical Analysis. Society for Industrial & Applied Mathematics , 2020. https://doi.org/10.1137/19m126284x.","apa":"Feliciangeli, D., & Seiringer, R. (2020). Uniqueness and nondegeneracy of minimizers of the Pekar functional on a ball. SIAM Journal on Mathematical Analysis. Society for Industrial & Applied Mathematics . https://doi.org/10.1137/19m126284x","mla":"Feliciangeli, Dario, and Robert Seiringer. “Uniqueness and Nondegeneracy of Minimizers of the Pekar Functional on a Ball.” SIAM Journal on Mathematical Analysis, vol. 52, no. 1, Society for Industrial & Applied Mathematics , 2020, pp. 605–22, doi:10.1137/19m126284x."},"article_type":"original","language":[{"iso":"eng"}],"department":[{"_id":"RoSe"}],"article_processing_charge":"No","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","author":[{"orcid":"0000-0003-0754-8530","last_name":"Feliciangeli","id":"41A639AA-F248-11E8-B48F-1D18A9856A87","first_name":"Dario","full_name":"Feliciangeli, Dario"},{"full_name":"Seiringer, Robert","last_name":"Seiringer","orcid":"0000-0002-6781-0521","first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"title":"Uniqueness and nondegeneracy of minimizers of the Pekar functional on a ball","publisher":"Society for Industrial & Applied Mathematics ","has_accepted_license":"1","oa_version":"Preprint","ec_funded":1,"isi":1,"related_material":{"record":[{"status":"public","relation":"dissertation_contains","id":"9733"}]},"publication":"SIAM Journal on Mathematical Analysis","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1904.08647"}],"doi":"10.1137/19m126284x","day":"12","status":"public","date_created":"2021-08-06T07:34:16Z","tmp":{"short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"ddc":["510"],"volume":52,"year":"2020","page":"605-622","external_id":{"arxiv":["1904.08647 "],"isi":["000546967700022"]},"oa":1,"issue":"1","keyword":["Applied Mathematics","Computational Mathematics","Analysis"],"date_updated":"2023-09-07T13:30:11Z","acknowledgement":"We are grateful for the hospitality at the Mittag-Leffler Institute, where part of this work has been done. The work of the authors was supported by the European Research Council (ERC)under the European Union's Horizon 2020 research and innovation programme grant 694227.","date_published":"2020-02-12T00:00:00Z","intvolume":" 52","month":"02"},{"day":"15","status":"public","date_created":"2021-08-06T11:18:15Z","_id":"9798","abstract":[{"lang":"eng","text":"Fitness interactions between mutations can influence a population’s evolution in many different ways. While epistatic effects are difficult to measure precisely, important information is captured by the mean and variance of log fitnesses for individuals carrying different numbers of mutations. We derive predictions for these quantities from a class of simple fitness landscapes, based on models of optimizing selection on quantitative traits. We also explore extensions to the models, including modular pleiotropy, variable effect sizes, mutational bias and maladaptation of the wild type. We illustrate our approach by reanalysing a large dataset of mutant effects in a yeast snoRNA. Though characterized by some large epistatic effects, these data give a good overall fit to the non-epistatic null model, suggesting that epistasis might have limited influence on the evolutionary dynamics in this system. We also show how the amount of epistasis depends on both the underlying fitness landscape and the distribution of mutations, and so is expected to vary in consistent ways between new mutations, standing variation and fixed mutations."}],"type":"research_data_reference","citation":{"chicago":"Fraisse, Christelle, and John J. Welch. “Simulation Code for Fig S2 from the Distribution of Epistasis on Simple Fitness Landscapes.” Royal Society of London, 2020. https://doi.org/10.6084/m9.figshare.7957472.v1.","short":"C. Fraisse, J.J. Welch, (2020).","ista":"Fraisse C, Welch JJ. 2020. Simulation code for Fig S2 from the distribution of epistasis on simple fitness landscapes, Royal Society of London, 10.6084/m9.figshare.7957472.v1.","ieee":"C. Fraisse and J. J. Welch, “Simulation code for Fig S2 from the distribution of epistasis on simple fitness landscapes.” Royal Society of London, 2020.","ama":"Fraisse C, Welch JJ. Simulation code for Fig S2 from the distribution of epistasis on simple fitness landscapes. 2020. doi:10.6084/m9.figshare.7957472.v1","mla":"Fraisse, Christelle, and John J. Welch. Simulation Code for Fig S2 from the Distribution of Epistasis on Simple Fitness Landscapes. Royal Society of London, 2020, doi:10.6084/m9.figshare.7957472.v1.","apa":"Fraisse, C., & Welch, J. J. (2020). Simulation code for Fig S2 from the distribution of epistasis on simple fitness landscapes. Royal Society of London. https://doi.org/10.6084/m9.figshare.7957472.v1"},"oa_version":"Published Version","related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"6467"}]},"doi":"10.6084/m9.figshare.7957472.v1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.6084/m9.figshare.7957472.v1"}],"oa":1,"title":"Simulation code for Fig S2 from the distribution of epistasis on simple fitness landscapes","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","author":[{"full_name":"Fraisse, Christelle","id":"32DF5794-F248-11E8-B48F-1D18A9856A87","first_name":"Christelle","orcid":"0000-0001-8441-5075","last_name":"Fraisse"},{"first_name":"John J.","last_name":"Welch","full_name":"Welch, John J."}],"date_updated":"2023-08-25T10:34:41Z","publisher":"Royal Society of London","date_published":"2020-10-15T00:00:00Z","month":"10","year":"2020","department":[{"_id":"BeVi"},{"_id":"NiBa"}],"article_processing_charge":"No"},{"department":[{"_id":"BeVi"},{"_id":"NiBa"}],"article_processing_charge":"No","year":"2020","publisher":"Royal Society of London","date_published":"2020-10-15T00:00:00Z","month":"10","title":"Simulation code for Fig S1 from the distribution of epistasis on simple fitness landscapes","author":[{"full_name":"Fraisse, Christelle","first_name":"Christelle","id":"32DF5794-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8441-5075","last_name":"Fraisse"},{"last_name":"Welch","first_name":"John J.","full_name":"Welch, John J."}],"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","oa":1,"date_updated":"2023-08-25T10:34:41Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.6084/m9.figshare.7957469.v1"}],"doi":"10.6084/m9.figshare.7957469.v1","oa_version":"Published Version","related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"6467"}]},"abstract":[{"lang":"eng","text":"Fitness interactions between mutations can influence a population’s evolution in many different ways. While epistatic effects are difficult to measure precisely, important information is captured by the mean and variance of log fitnesses for individuals carrying different numbers of mutations. We derive predictions for these quantities from a class of simple fitness landscapes, based on models of optimizing selection on quantitative traits. We also explore extensions to the models, including modular pleiotropy, variable effect sizes, mutational bias and maladaptation of the wild type. We illustrate our approach by reanalysing a large dataset of mutant effects in a yeast snoRNA. Though characterized by some large epistatic effects, these data give a good overall fit to the non-epistatic null model, suggesting that epistasis might have limited influence on the evolutionary dynamics in this system. We also show how the amount of epistasis depends on both the underlying fitness landscape and the distribution of mutations, and so is expected to vary in consistent ways between new mutations, standing variation and fixed mutations."}],"type":"research_data_reference","citation":{"chicago":"Fraisse, Christelle, and John J. Welch. “Simulation Code for Fig S1 from the Distribution of Epistasis on Simple Fitness Landscapes.” Royal Society of London, 2020. https://doi.org/10.6084/m9.figshare.7957469.v1.","ama":"Fraisse C, Welch JJ. Simulation code for Fig S1 from the distribution of epistasis on simple fitness landscapes. 2020. doi:10.6084/m9.figshare.7957469.v1","ista":"Fraisse C, Welch JJ. 2020. Simulation code for Fig S1 from the distribution of epistasis on simple fitness landscapes, Royal Society of London, 10.6084/m9.figshare.7957469.v1.","short":"C. Fraisse, J.J. Welch, (2020).","ieee":"C. Fraisse and J. J. Welch, “Simulation code for Fig S1 from the distribution of epistasis on simple fitness landscapes.” Royal Society of London, 2020.","mla":"Fraisse, Christelle, and John J. Welch. Simulation Code for Fig S1 from the Distribution of Epistasis on Simple Fitness Landscapes. Royal Society of London, 2020, doi:10.6084/m9.figshare.7957469.v1.","apa":"Fraisse, C., & Welch, J. J. (2020). Simulation code for Fig S1 from the distribution of epistasis on simple fitness landscapes. 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(2020). Data and mathematica notebooks for plotting figures from language learning with communication between learners from language acquisition with communication between learners. Royal Society. https://doi.org/10.6084/m9.figshare.5973013.v1","mla":"Ibsen-Jensen, Rasmus, et al. Data and Mathematica Notebooks for Plotting Figures from Language Learning with Communication between Learners from Language Acquisition with Communication between Learners. Royal Society, 2020, doi:10.6084/m9.figshare.5973013.v1.","ama":"Ibsen-Jensen R, Tkadlec J, Chatterjee K, Nowak M. Data and mathematica notebooks for plotting figures from language learning with communication between learners from language acquisition with communication between learners. 2020. doi:10.6084/m9.figshare.5973013.v1","short":"R. Ibsen-Jensen, J. Tkadlec, K. Chatterjee, M. Nowak, (2020).","ieee":"R. Ibsen-Jensen, J. Tkadlec, K. Chatterjee, and M. Nowak, “Data and mathematica notebooks for plotting figures from language learning with communication between learners from language acquisition with communication between learners.” Royal Society, 2020.","ista":"Ibsen-Jensen R, Tkadlec J, Chatterjee K, Nowak M. 2020. Data and mathematica notebooks for plotting figures from language learning with communication between learners from language acquisition with communication between learners, Royal Society, 10.6084/m9.figshare.5973013.v1.","chicago":"Ibsen-Jensen, Rasmus, Josef Tkadlec, Krishnendu Chatterjee, and Martin Nowak. “Data and Mathematica Notebooks for Plotting Figures from Language Learning with Communication between Learners from Language Acquisition with Communication between Learners.” Royal Society, 2020. https://doi.org/10.6084/m9.figshare.5973013.v1."},"status":"public","day":"15","date_created":"2021-08-06T13:09:57Z","_id":"9814"},{"publisher":"Wiley","has_accepted_license":"1","author":[{"full_name":"Amberg, Nicole","last_name":"Amberg","orcid":"0000-0002-3183-8207","id":"4CD6AAC6-F248-11E8-B48F-1D18A9856A87","first_name":"Nicole"},{"first_name":"Susanne","id":"2D6B7A9A-F248-11E8-B48F-1D18A9856A87","last_name":"Laukoter","orcid":"0000-0002-7903-3010","full_name":"Laukoter, Susanne"},{"full_name":"Hippenmeyer, Simon","last_name":"Hippenmeyer","orcid":"0000-0003-2279-1061","id":"37B36620-F248-11E8-B48F-1D18A9856A87","first_name":"Simon"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","title":"Epigenetic cues modulating the generation of cell type diversity in the cerebral cortex","file":[{"file_name":"2019_Wiley_Amberg.pdf","date_created":"2020-01-07T13:35:52Z","date_updated":"2020-07-14T12:45:45Z","creator":"kschuh","file_size":889709,"content_type":"application/pdf","file_id":"7239","relation":"main_file","checksum":"db027721a95d36f5de36aadcd0bdf7e6","access_level":"open_access"}],"department":[{"_id":"SiHi"}],"article_processing_charge":"Yes (via OA deal)","article_type":"review","language":[{"iso":"eng"}],"scopus_import":"1","abstract":[{"lang":"eng","text":"The cerebral cortex is composed of a large variety of distinct cell-types including projection neurons, interneurons and glial cells which emerge from distinct neural stem cell (NSC) lineages. The vast majority of cortical projection neurons and certain classes of glial cells are generated by radial glial progenitor cells (RGPs) in a highly orchestrated manner. Recent studies employing single cell analysis and clonal lineage tracing suggest that NSC and RGP lineage progression are regulated in a profound deterministic manner. In this review we focus on recent advances based mainly on correlative phenotypic data emerging from functional genetic studies in mice. We establish hypotheses to test in future research and outline a conceptual framework how epigenetic cues modulate the generation of cell-type diversity during cortical development. This article is protected by copyright. All rights reserved."}],"file_date_updated":"2020-07-14T12:45:45Z","type":"journal_article","citation":{"apa":"Amberg, N., Laukoter, S., & Hippenmeyer, S. (2019). Epigenetic cues modulating the generation of cell type diversity in the cerebral cortex. Journal of Neurochemistry. Wiley. https://doi.org/10.1111/jnc.14601","mla":"Amberg, Nicole, et al. “Epigenetic Cues Modulating the Generation of Cell Type Diversity in the Cerebral Cortex.” Journal of Neurochemistry, vol. 149, no. 1, Wiley, 2019, pp. 12–26, doi:10.1111/jnc.14601.","ama":"Amberg N, Laukoter S, Hippenmeyer S. Epigenetic cues modulating the generation of cell type diversity in the cerebral cortex. Journal of Neurochemistry. 2019;149(1):12-26. doi:10.1111/jnc.14601","short":"N. Amberg, S. Laukoter, S. Hippenmeyer, Journal of Neurochemistry 149 (2019) 12–26.","ista":"Amberg N, Laukoter S, Hippenmeyer S. 2019. Epigenetic cues modulating the generation of cell type diversity in the cerebral cortex. Journal of Neurochemistry. 149(1), 12–26.","ieee":"N. Amberg, S. Laukoter, and S. Hippenmeyer, “Epigenetic cues modulating the generation of cell type diversity in the cerebral cortex,” Journal of Neurochemistry, vol. 149, no. 1. Wiley, pp. 12–26, 2019.","chicago":"Amberg, Nicole, Susanne Laukoter, and Simon Hippenmeyer. “Epigenetic Cues Modulating the Generation of Cell Type Diversity in the Cerebral Cortex.” Journal of Neurochemistry. Wiley, 2019. https://doi.org/10.1111/jnc.14601."},"quality_controlled":"1","_id":"27","publication_status":"published","project":[{"grant_number":"LS13-002","name":"Mapping Cell-Type Specificity of the Genomic Imprintome in the Brain","_id":"25D92700-B435-11E9-9278-68D0E5697425"},{"grant_number":"RGP0053/2014","_id":"25D7962E-B435-11E9-9278-68D0E5697425","name":"Quantitative Structure-Function Analysis of Cerebral Cortex Assembly at Clonal Level"},{"grant_number":"618444","call_identifier":"FP7","name":"Molecular Mechanisms of Cerebral Cortex Development","_id":"25D61E48-B435-11E9-9278-68D0E5697425"},{"grant_number":"725780","call_identifier":"H2020","name":"Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development","_id":"260018B0-B435-11E9-9278-68D0E5697425"}],"acknowledgement":" This work was supported by IST Austria institutional funds; NÖ Forschung und Bildung \r\nn[f+b] (C13-002) to SH; a program grant from the Human Frontiers Science Program (RGP0053/2014) to SH; the People Programme (Marie Curie Actions) of the European Union’s Seventh Framework Programme (FP7/2007-2013) under REA grant agreement No 618444 to SH, and the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 725780 LinPro)to SH.\r\n","date_published":"2019-04-01T00:00:00Z","month":"04","intvolume":" 149","oa":1,"issue":"1","date_updated":"2023-09-11T13:40:26Z","external_id":{"isi":["000462680200002"]},"page":"12-26","year":"2019","volume":149,"day":"01","status":"public","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"ddc":["570"],"date_created":"2018-12-11T11:44:14Z","publication":"Journal of Neurochemistry","doi":"10.1111/jnc.14601","ec_funded":1,"oa_version":"Published Version","isi":1},{"department":[{"_id":"JaMa"}],"article_processing_charge":"No","article_type":"original","language":[{"iso":"eng"}],"publisher":"Elsevier","author":[{"full_name":"Gerencser, Mate","first_name":"Mate","id":"44ECEDF2-F248-11E8-B48F-1D18A9856A87","last_name":"Gerencser"},{"first_name":"István","last_name":"Gyöngy","full_name":"Gyöngy, István"}],"title":"A Feynman–Kac formula for stochastic Dirichlet problems","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication_status":"published","type":"journal_article","arxiv":1,"scopus_import":"1","abstract":[{"lang":"eng","text":"A representation formula for solutions of stochastic partial differential equations with Dirichlet boundary conditions is proved. The scope of our setting is wide enough to cover the general situation when the backward characteristics that appear in the usual formulation are not even defined in the Itô sense."}],"citation":{"ama":"Gerencser M, Gyöngy I. A Feynman–Kac formula for stochastic Dirichlet problems. Stochastic Processes and their Applications. 2019;129(3):995-1012. doi:10.1016/j.spa.2018.04.003","ieee":"M. Gerencser and I. Gyöngy, “A Feynman–Kac formula for stochastic Dirichlet problems,” Stochastic Processes and their Applications, vol. 129, no. 3. Elsevier, pp. 995–1012, 2019.","short":"M. Gerencser, I. Gyöngy, Stochastic Processes and Their Applications 129 (2019) 995–1012.","ista":"Gerencser M, Gyöngy I. 2019. A Feynman–Kac formula for stochastic Dirichlet problems. Stochastic Processes and their Applications. 129(3), 995–1012.","chicago":"Gerencser, Mate, and István Gyöngy. “A Feynman–Kac Formula for Stochastic Dirichlet Problems.” Stochastic Processes and Their Applications. Elsevier, 2019. https://doi.org/10.1016/j.spa.2018.04.003.","apa":"Gerencser, M., & Gyöngy, I. (2019). A Feynman–Kac formula for stochastic Dirichlet problems. Stochastic Processes and Their Applications. Elsevier. https://doi.org/10.1016/j.spa.2018.04.003","mla":"Gerencser, Mate, and István Gyöngy. “A Feynman–Kac Formula for Stochastic Dirichlet Problems.” Stochastic Processes and Their Applications, vol. 129, no. 3, Elsevier, 2019, pp. 995–1012, doi:10.1016/j.spa.2018.04.003."},"quality_controlled":"1","_id":"301","external_id":{"isi":["000458945300012"],"arxiv":["1611.04177"]},"page":"995-1012","year":"2019","month":"03","intvolume":" 129","date_published":"2019-03-01T00:00:00Z","issue":"3","oa":1,"date_updated":"2023-08-24T14:20:49Z","doi":"10.1016/j.spa.2018.04.003","main_file_link":[{"url":"https://arxiv.org/abs/1611.04177","open_access":"1"}],"publication":"Stochastic Processes and their Applications","isi":1,"oa_version":"Preprint","volume":129,"day":"01","status":"public","date_created":"2018-12-11T11:45:42Z"},{"quality_controlled":"1","_id":"319","abstract":[{"text":"We study spaces of modelled distributions with singular behaviour near the boundary of a domain that, in the context of the theory of regularity structures, allow one to give robust solution theories for singular stochastic PDEs with boundary conditions. The calculus of modelled distributions established in Hairer (Invent Math 198(2):269–504, 2014. https://doi.org/10.1007/s00222-014-0505-4) is extended to this setting. We formulate and solve fixed point problems in these spaces with a class of kernels that is sufficiently large to cover in particular the Dirichlet and Neumann heat kernels. These results are then used to provide solution theories for the KPZ equation with Dirichlet and Neumann boundary conditions and for the 2D generalised parabolic Anderson model with Dirichlet boundary conditions. In the case of the KPZ equation with Neumann boundary conditions, we show that, depending on the class of mollifiers one considers, a “boundary renormalisation” takes place. In other words, there are situations in which a certain boundary condition is applied to an approximation to the KPZ equation, but the limiting process is the Hopf–Cole solution to the KPZ equation with a different boundary condition.","lang":"eng"}],"scopus_import":"1","file_date_updated":"2020-07-14T12:46:03Z","type":"journal_article","publication_identifier":{"issn":["01788051"],"eissn":["14322064"]},"citation":{"chicago":"Gerencser, Mate, and Martin Hairer. “Singular SPDEs in Domains with Boundaries.” Probability Theory and Related Fields. Springer, 2019. https://doi.org/10.1007/s00440-018-0841-1.","ista":"Gerencser M, Hairer M. 2019. Singular SPDEs in domains with boundaries. Probability Theory and Related Fields. 173(3–4), 697–758.","short":"M. Gerencser, M. Hairer, Probability Theory and Related Fields 173 (2019) 697–758.","ieee":"M. Gerencser and M. Hairer, “Singular SPDEs in domains with boundaries,” Probability Theory and Related Fields, vol. 173, no. 3–4. Springer, pp. 697–758, 2019.","ama":"Gerencser M, Hairer M. Singular SPDEs in domains with boundaries. Probability Theory and Related Fields. 2019;173(3-4):697–758. doi:10.1007/s00440-018-0841-1","mla":"Gerencser, Mate, and Martin Hairer. “Singular SPDEs in Domains with Boundaries.” Probability Theory and Related Fields, vol. 173, no. 3–4, Springer, 2019, pp. 697–758, doi:10.1007/s00440-018-0841-1.","apa":"Gerencser, M., & Hairer, M. (2019). Singular SPDEs in domains with boundaries. Probability Theory and Related Fields. Springer. https://doi.org/10.1007/s00440-018-0841-1"},"publication_status":"published","project":[{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"author":[{"full_name":"Gerencser, Mate","last_name":"Gerencser","id":"44ECEDF2-F248-11E8-B48F-1D18A9856A87","first_name":"Mate"},{"full_name":"Hairer, Martin","first_name":"Martin","last_name":"Hairer"}],"title":"Singular SPDEs in domains with boundaries","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","file":[{"file_name":"2018_ProbTheory_Gerencser.pdf","date_created":"2018-12-17T16:25:24Z","date_updated":"2020-07-14T12:46:03Z","creator":"dernst","file_size":893182,"content_type":"application/pdf","file_id":"5722","relation":"main_file","checksum":"288d16ef7291242f485a9660979486e3","access_level":"open_access"}],"publisher":"Springer","has_accepted_license":"1","article_type":"original","language":[{"iso":"eng"}],"publist_id":"7546","department":[{"_id":"JaMa"}],"article_processing_charge":"Yes (via OA deal)","status":"public","day":"01","ddc":["510"],"tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"date_created":"2018-12-11T11:45:48Z","volume":173,"oa_version":"Published Version","isi":1,"publication":"Probability Theory and Related Fields","doi":"10.1007/s00440-018-0841-1","oa":1,"issue":"3-4","date_updated":"2023-08-24T14:38:32Z","acknowledgement":"MG thanks the support of the LMS Postdoctoral Mobility Grant.\r\n\r\n","date_published":"2019-04-01T00:00:00Z","month":"04","intvolume":" 173","year":"2019","external_id":{"isi":["000463613800001"]},"page":"697–758"},{"_id":"10664","date_created":"2022-01-25T15:09:58Z","quality_controlled":"1","day":"28","status":"public","volume":"03","citation":{"mla":"Yankowitz, Mathew, et al. “New Correlated Phenomena in Magic-Angle Twisted Bilayer Graphene/S.” Journal Club for Condensed Matter Physics, vol. 03, Simons Foundation ; University of California, Riverside, 2019, doi:10.36471/jccm_february_2019_03.","apa":"Yankowitz, M., Chen, S., Polshyn, H., Watanabe, K., Taniguchi, T., Graf, D., … Finney, J. (2019). New correlated phenomena in magic-angle twisted bilayer graphene/s. Journal Club for Condensed Matter Physics. Simons Foundation ; University of California, Riverside. https://doi.org/10.36471/jccm_february_2019_03","chicago":"Yankowitz, Mathew, Shaowen Chen, Hryhoriy Polshyn, K. Watanabe, T. Taniguchi, David Graf, Andrea F. Young, et al. “New Correlated Phenomena in Magic-Angle Twisted Bilayer Graphene/S.” Journal Club for Condensed Matter Physics. Simons Foundation ; University of California, Riverside, 2019. https://doi.org/10.36471/jccm_february_2019_03.","ista":"Yankowitz M, Chen S, Polshyn H, Watanabe K, Taniguchi T, Graf D, Young AF, Dean CR, Sharpe AL, Fox EJ, Barnard AW, Finney J. 2019. New correlated phenomena in magic-angle twisted bilayer graphene/s. Journal Club for Condensed Matter Physics. 03.","short":"M. Yankowitz, S. Chen, H. Polshyn, K. Watanabe, T. Taniguchi, D. Graf, A.F. Young, C.R. Dean, A.L. Sharpe, E.J. Fox, A.W. Barnard, J. Finney, Journal Club for Condensed Matter Physics 03 (2019).","ieee":"M. Yankowitz et al., “New correlated phenomena in magic-angle twisted bilayer graphene/s,” Journal Club for Condensed Matter Physics, vol. 03. Simons Foundation ; University of California, Riverside, 2019.","ama":"Yankowitz M, Chen S, Polshyn H, et al. New correlated phenomena in magic-angle twisted bilayer graphene/s. Journal Club for Condensed Matter Physics. 2019;03. doi:10.36471/jccm_february_2019_03"},"abstract":[{"text":"Since the discovery of correlated insulators and superconductivity in magic-angle twisted bilayer graphene (tBLG) ([1, 2], JCCM April 2018), theorists have been excitedly pursuing the alluring mix of band topology, symmetry breaking, Mott insulators and superconductivity at play, as well as the potential relation (if any) to high-Tc physics. Now a new stream\r\nof experimental work is arriving which further enriches the story. To briefly recap Episodes 1 and 2 (JCCM April and November 2018), when two graphene layers are stacked with a small rotational mismatch θ, the resulting long-wavelength moire pattern leads to a superlattice potential which reconstructs the low energy band structure. When θ approaches the “magic-angle” θM ∼ 1 ◦, the band structure features eight nearly-flat bands which fill when the electron number per moire unit cell, n/n0, lies between −4 < n/n0 < 4. The bands can be counted as 8 = 2 × 2 × 2: for each spin (2×) and valley (2×) characteristic of monolayergraphene, tBLG has has 2× flat bands which cross at mini-Dirac points.","lang":"eng"}],"type":"journal_article","oa_version":"Published Version","publication":"Journal Club for Condensed Matter Physics","doi":"10.36471/jccm_february_2019_03","main_file_link":[{"open_access":"1","url":"https://www.condmatjclub.org/?p=3541"}],"publication_status":"published","date_updated":"2022-01-25T15:56:39Z","author":[{"full_name":"Yankowitz, Mathew","last_name":"Yankowitz","first_name":"Mathew"},{"full_name":"Chen, Shaowen","first_name":"Shaowen","last_name":"Chen"},{"full_name":"Polshyn, Hryhoriy","last_name":"Polshyn","orcid":"0000-0001-8223-8896","id":"edfc7cb1-526e-11ec-b05a-e6ecc27e4e48","first_name":"Hryhoriy"},{"first_name":"K.","last_name":"Watanabe","full_name":"Watanabe, K."},{"last_name":"Taniguchi","first_name":"T.","full_name":"Taniguchi, T."},{"full_name":"Graf, David","last_name":"Graf","first_name":"David"},{"full_name":"Young, Andrea F.","first_name":"Andrea F.","last_name":"Young"},{"last_name":"Dean","first_name":"Cory R.","full_name":"Dean, Cory R."},{"full_name":"Sharpe, Aaron L.","last_name":"Sharpe","first_name":"Aaron L."},{"first_name":"E.J.","last_name":"Fox","full_name":"Fox, E.J."},{"first_name":"A.W.","last_name":"Barnard","full_name":"Barnard, A.W."},{"full_name":"Finney, Joe","first_name":"Joe","last_name":"Finney"}],"title":"New correlated phenomena in magic-angle twisted bilayer graphene/s","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","oa":1,"date_published":"2019-02-28T00:00:00Z","month":"02","intvolume":" 3","publisher":"Simons Foundation ; University of California, Riverside","language":[{"iso":"eng"}],"article_type":"original","year":"2019","article_processing_charge":"No"},{"citation":{"chicago":"Serlin, Marec, Charles Tschirhart, Hryhoriy Polshyn, Jiacheng Zhu, Martin E. Huber, and Andrea Young. “Direct Imaging of Magnetic Structure in Twisted Bilayer Graphene with Scanning NanoSQUID-On-Tip Microscopy.” In APS March Meeting 2019, Vol. 64. American Physical Society, 2019.","short":"M. Serlin, C. Tschirhart, H. Polshyn, J. Zhu, M.E. Huber, A. Young, in:, APS March Meeting 2019, American Physical Society, 2019.","ista":"Serlin M, Tschirhart C, Polshyn H, Zhu J, Huber ME, Young A. 2019. Direct Imaging of magnetic structure in twisted bilayer graphene with scanning nanoSQUID-On-Tip microscopy. APS March Meeting 2019. APS: American Physical Society, Bulletin of the American Physical Society, vol. 64, L14.00006.","ieee":"M. Serlin, C. Tschirhart, H. Polshyn, J. Zhu, M. E. Huber, and A. Young, “Direct Imaging of magnetic structure in twisted bilayer graphene with scanning nanoSQUID-On-Tip microscopy,” in APS March Meeting 2019, Boston, MA, United States, 2019, vol. 64, no. 2.","ama":"Serlin M, Tschirhart C, Polshyn H, Zhu J, Huber ME, Young A. Direct Imaging of magnetic structure in twisted bilayer graphene with scanning nanoSQUID-On-Tip microscopy. In: APS March Meeting 2019. Vol 64. American Physical Society; 2019.","mla":"Serlin, Marec, et al. “Direct Imaging of Magnetic Structure in Twisted Bilayer Graphene with Scanning NanoSQUID-On-Tip Microscopy.” APS March Meeting 2019, vol. 64, no. 2, L14.00006, American Physical Society, 2019.","apa":"Serlin, M., Tschirhart, C., Polshyn, H., Zhu, J., Huber, M. E., & Young, A. (2019). Direct Imaging of magnetic structure in twisted bilayer graphene with scanning nanoSQUID-On-Tip microscopy. In APS March Meeting 2019 (Vol. 64). Boston, MA, United States: American Physical Society."},"extern":"1","publication_identifier":{"issn":["0003-0503"]},"abstract":[{"lang":"eng","text":"Bilayer graphene, rotationally faulted to ~1.1 degree misalignment, has recently been shown to host superconducting and resistive states associated with the formation of a flat electronic band. While numerous theories exist for the origins of both states, direct validation of these theories remains an outstanding experimental problem. Here, we focus on the resistive states occurring at commensurate filling (1/2, 1/4, and 3/4) of the two lowest superlattice bands. We test theoretical proposals that these states arise due to broken spin—and/or valley—symmetry by performing direct magnetic imaging with nanoscale SQUID-on-tip microscopy. This technique provides single-spin resolved magnetometry on sub-100nm length scales. I will present imaging data from our 4.2K nSOT microscope on graphite-gated twisted bilayers near the flat band condition and discuss the implications for the physics of the commensurate resistive states."}],"type":"conference","_id":"10722","quality_controlled":"1","publication_status":"published","publisher":"American Physical Society","title":"Direct Imaging of magnetic structure in twisted bilayer graphene with scanning nanoSQUID-On-Tip microscopy","author":[{"last_name":"Serlin","first_name":"Marec","full_name":"Serlin, Marec"},{"full_name":"Tschirhart, Charles","first_name":"Charles","last_name":"Tschirhart"},{"first_name":"Hryhoriy","id":"edfc7cb1-526e-11ec-b05a-e6ecc27e4e48","last_name":"Polshyn","orcid":"0000-0001-8223-8896","full_name":"Polshyn, Hryhoriy"},{"full_name":"Zhu, Jiacheng","first_name":"Jiacheng","last_name":"Zhu"},{"last_name":"Huber","first_name":"Martin E.","full_name":"Huber, Martin E."},{"first_name":"Andrea","last_name":"Young","full_name":"Young, Andrea"}],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","article_processing_charge":"No","language":[{"iso":"eng"}],"volume":64,"date_created":"2022-02-04T11:54:21Z","status":"public","day":"01","publication":"APS March Meeting 2019","main_file_link":[{"open_access":"1","url":"https://meetings.aps.org/Meeting/MAR19/Session/L14.6"}],"oa_version":"Published Version","date_published":"2019-03-01T00:00:00Z","alternative_title":["Bulletin of the American Physical Society"],"month":"03","intvolume":" 64","article_number":"L14.00006","date_updated":"2022-02-08T10:25:30Z","oa":1,"issue":"2","conference":{"location":"Boston, MA, United States","end_date":"2019-03-08","start_date":"2019-03-04","name":"APS: American Physical Society"},"year":"2019"}]