[{"quality_controlled":"1","type":"journal_article","scopus_import":"1","publication_status":"published","publisher":"Cambridge University Press","arxiv":1,"date_published":"2022-11-07T00:00:00Z","title":"Self-sustainment of coherent structures in counter-rotating Taylor–Couette flow","keyword":["Mechanical Engineering","Mechanics of Materials","Condensed Matter Physics","Applied Mathematics"],"day":"07","isi":1,"publication":"Journal of Fluid Mechanics","_id":"12137","volume":951,"main_file_link":[{"open_access":"1","url":" https://doi.org/10.48550/arXiv.2207.12990"}],"doi":"10.1017/jfm.2022.828","date_created":"2023-01-12T12:04:17Z","date_updated":"2023-08-04T08:54:16Z","department":[{"_id":"BjHo"}],"intvolume":"       951","month":"11","article_type":"original","acknowledgement":"K.D.’s research was supported by an Australian Research Council Discovery Early Career\r\nResearcher Award (DE170100171). B.W., R.A., F.M. and A.M. research was supported by the Spanish Ministerio de Economía y Competitivdad (grant numbers FIS2016-77849-R and FIS2017-85794-P) and Ministerio de Ciencia e Innovación (grant number PID2020-114043GB-I00) and the Generalitat de Catalunya (grant 2017-SGR-785). B.W.’s research was also supported by the Chinese Scholarship Council (grant CSC no. 201806440152).","citation":{"ista":"Wang B, Ayats López R, Deguchi K, Mellibovsky F, Meseguer A. 2022. Self-sustainment of coherent structures in counter-rotating Taylor–Couette flow. Journal of Fluid Mechanics. 951, A21.","apa":"Wang, B., Ayats López, R., Deguchi, K., Mellibovsky, F., &#38; Meseguer, A. (2022). Self-sustainment of coherent structures in counter-rotating Taylor–Couette flow. <i>Journal of Fluid Mechanics</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/jfm.2022.828\">https://doi.org/10.1017/jfm.2022.828</a>","ama":"Wang B, Ayats López R, Deguchi K, Mellibovsky F, Meseguer A. Self-sustainment of coherent structures in counter-rotating Taylor–Couette flow. <i>Journal of Fluid Mechanics</i>. 2022;951. doi:<a href=\"https://doi.org/10.1017/jfm.2022.828\">10.1017/jfm.2022.828</a>","ieee":"B. Wang, R. Ayats López, K. Deguchi, F. Mellibovsky, and A. Meseguer, “Self-sustainment of coherent structures in counter-rotating Taylor–Couette flow,” <i>Journal of Fluid Mechanics</i>, vol. 951. Cambridge University Press, 2022.","short":"B. Wang, R. Ayats López, K. Deguchi, F. Mellibovsky, A. Meseguer, Journal of Fluid Mechanics 951 (2022).","mla":"Wang, B., et al. “Self-Sustainment of Coherent Structures in Counter-Rotating Taylor–Couette Flow.” <i>Journal of Fluid Mechanics</i>, vol. 951, A21, Cambridge University Press, 2022, doi:<a href=\"https://doi.org/10.1017/jfm.2022.828\">10.1017/jfm.2022.828</a>.","chicago":"Wang, B., Roger Ayats López, K. Deguchi, F. Mellibovsky, and A. Meseguer. “Self-Sustainment of Coherent Structures in Counter-Rotating Taylor–Couette Flow.” <i>Journal of Fluid Mechanics</i>. Cambridge University Press, 2022. <a href=\"https://doi.org/10.1017/jfm.2022.828\">https://doi.org/10.1017/jfm.2022.828</a>."},"external_id":{"isi":["000879446900001"],"arxiv":["2207.12990"]},"article_processing_charge":"No","abstract":[{"lang":"eng","text":"We investigate the local self-sustained process underlying spiral turbulence in counter-rotating Taylor–Couette flow using a periodic annular domain, shaped as a parallelogram, two of whose sides are aligned with the cylindrical helix described by the spiral pattern. The primary focus of the study is placed on the emergence of drifting–rotating waves (DRW) that capture, in a relatively small domain, the main features of coherent structures typically observed in developed turbulence. The transitional dynamics of the subcritical region, far below the first instability of the laminar circular Couette flow, is determined by the upper and lower branches of DRW solutions originated at saddle-node bifurcations. The mechanism whereby these solutions self-sustain, and the chaotic dynamics they induce, are conspicuously reminiscent of other subcritical shear flows. Remarkably, the flow properties of DRW persist even as the Reynolds number is increased beyond the linear stability threshold of the base flow. Simulations in a narrow parallelogram domain stretched in the azimuthal direction to revolve around the apparatus a full turn confirm that self-sustained vortices eventually concentrate into a localised pattern. The resulting statistical steady state satisfactorily reproduces qualitatively, and to a certain degree also quantitatively, the topology and properties of spiral turbulence as calculated in a large periodic domain of sufficient aspect ratio that is representative of the real system."}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","article_number":"A21","language":[{"iso":"eng"}],"oa":1,"year":"2022","publication_identifier":{"issn":["0022-1120"],"eissn":["1469-7645"]},"oa_version":"Preprint","status":"public","author":[{"last_name":"Wang","full_name":"Wang, B.","first_name":"B."},{"id":"ab77522d-073b-11ed-8aff-e71b39258362","first_name":"Roger","orcid":"0000-0001-6572-0621","last_name":"Ayats López","full_name":"Ayats López, Roger"},{"full_name":"Deguchi, K.","last_name":"Deguchi","first_name":"K."},{"last_name":"Mellibovsky","full_name":"Mellibovsky, F.","first_name":"F."},{"last_name":"Meseguer","full_name":"Meseguer, A.","first_name":"A."}]},{"year":"2022","ec_funded":1,"publication_identifier":{"issn":["0028-0836"],"eissn":["1476-4687"]},"oa_version":"Submitted Version","status":"public","page":"808-814","author":[{"last_name":"Kravchuk","full_name":"Kravchuk, Vladyslav","id":"4D62F2A6-F248-11E8-B48F-1D18A9856A87","first_name":"Vladyslav"},{"id":"5D8C9660-5D49-11EA-8188-567B3DDC885E","first_name":"Olga","last_name":"Petrova","full_name":"Petrova, Olga"},{"last_name":"Kampjut","full_name":"Kampjut, Domen","id":"37233050-F248-11E8-B48F-1D18A9856A87","first_name":"Domen"},{"first_name":"Anna","full_name":"Wojciechowska-Bason, Anna","last_name":"Wojciechowska-Bason"},{"first_name":"Zara","last_name":"Breese","full_name":"Breese, Zara"},{"full_name":"Sazanov, Leonid A","last_name":"Sazanov","orcid":"0000-0002-0977-7989","first_name":"Leonid A","id":"338D39FE-F248-11E8-B48F-1D18A9856A87"}],"related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1038/s41586-022-05457-8"},{"relation":"press_release","url":"https://ista.ac.at/en/news/proton-dominos-kick-off-life/","description":"News on ISTA website"}],"record":[{"relation":"dissertation_contains","status":"public","id":"12781"}]},"external_id":{"pmid":["36104567"],"isi":["000854788200001"]},"abstract":[{"lang":"eng","text":"Complex I is the first enzyme in the respiratory chain, which is responsible for energy production in mitochondria and bacteria1. Complex I couples the transfer of two electrons from NADH to quinone and the translocation of four protons across the membrane2, but the coupling mechanism remains contentious. Here we present cryo-electron microscopy structures of Escherichia coli complex I (EcCI) in different redox states, including catalytic turnover. EcCI exists mostly in the open state, in which the quinone cavity is exposed to the cytosol, allowing access for water molecules, which enable quinone movements. Unlike the mammalian paralogues3, EcCI can convert to the closed state only during turnover, showing that closed and open states are genuine turnover intermediates. The open-to-closed transition results in the tightly engulfed quinone cavity being connected to the central axis of the membrane arm, a source of substrate protons. Consistently, the proportion of the closed state increases with increasing pH. We propose a detailed but straightforward and robust mechanism comprising a ‘domino effect’ series of proton transfers and electrostatic interactions: the forward wave (‘dominoes stacking’) primes the pump, and the reverse wave (‘dominoes falling’) results in the ejection of all pumped protons from the distal subunit NuoL. This mechanism explains why protons exit exclusively from the NuoL subunit and is supported by our mutagenesis data. We contend that this is a universal coupling mechanism of complex I and related enzymes."}],"article_processing_charge":"No","acknowledged_ssus":[{"_id":"EM-Fac"},{"_id":"LifeSc"},{"_id":"ScienComp"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","file_date_updated":"2023-05-30T17:07:05Z","pmid":1,"language":[{"iso":"eng"}],"ddc":["572"],"oa":1,"issue":"7928","_id":"12138","volume":609,"file":[{"creator":"lsazanov","file_size":1425655,"file_name":"EcCxI_manuscript_rev3_noSI_updated_withFigs_opt.pdf","checksum":"d42a93e24f59e883ef0b5429832391d0","file_id":"13104","relation":"main_file","access_level":"open_access","date_created":"2023-05-30T17:05:31Z","date_updated":"2023-05-30T17:05:31Z","success":1,"content_type":"application/pdf"},{"file_name":"EcCxI_manuscript_rev3_SI_All_opt_upd.pdf","file_size":9842513,"creator":"lsazanov","content_type":"application/pdf","success":1,"checksum":"5422bc0a73b3daadafa262c7ea6deae3","file_id":"13105","relation":"main_file","date_updated":"2023-05-30T17:07:05Z","access_level":"open_access","date_created":"2023-05-30T17:07:05Z"}],"project":[{"name":"Structural characterization of E. coli complex I: an important mechanistic model","grant_number":"25541","_id":"238A0A5A-32DE-11EA-91FC-C7463DDC885E"},{"_id":"627abdeb-2b32-11ec-9570-ec31a97243d3","call_identifier":"H2020","grant_number":"101020697","name":"Structure and mechanism of respiratory chain molecular machines"}],"doi":"10.1038/s41586-022-05199-7","date_updated":"2023-08-04T08:54:52Z","date_created":"2023-01-12T12:04:33Z","department":[{"_id":"LeSa"}],"intvolume":"       609","month":"09","article_type":"original","acknowledgement":"This research was supported by the Scientific Service Units (SSU) of IST Austria through resources provided by the Electron Microscopy Facility (EMF), the Life Science Facility (LSF) and the IST high-performance computing cluster. We thank V.-V. Hodirnau from IST Austria EMF, M. Babiak from CEITEC for assistance with collecting cryo-EM data and A. Charnagalov for the assistance with protein purification. V.K. was a recipient of a DOC Fellowship of the Austrian Academy of Sciences at the Institute of Science and Technology, Austria. V.K. and O.P. are funded by the ERC Advanced Grant 101020697 RESPICHAIN to L.S. This work was also supported by the Medical Research Council (UK).","citation":{"mla":"Kravchuk, Vladyslav, et al. “A Universal Coupling Mechanism of Respiratory Complex I.” <i>Nature</i>, vol. 609, no. 7928, Springer Nature, 2022, pp. 808–14, doi:<a href=\"https://doi.org/10.1038/s41586-022-05199-7\">10.1038/s41586-022-05199-7</a>.","short":"V. Kravchuk, O. Petrova, D. Kampjut, A. Wojciechowska-Bason, Z. Breese, L.A. Sazanov, Nature 609 (2022) 808–814.","ieee":"V. Kravchuk, O. Petrova, D. Kampjut, A. Wojciechowska-Bason, Z. Breese, and L. A. Sazanov, “A universal coupling mechanism of respiratory complex I,” <i>Nature</i>, vol. 609, no. 7928. Springer Nature, pp. 808–814, 2022.","chicago":"Kravchuk, Vladyslav, Olga Petrova, Domen Kampjut, Anna Wojciechowska-Bason, Zara Breese, and Leonid A Sazanov. “A Universal Coupling Mechanism of Respiratory Complex I.” <i>Nature</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41586-022-05199-7\">https://doi.org/10.1038/s41586-022-05199-7</a>.","ista":"Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov LA. 2022. A universal coupling mechanism of respiratory complex I. Nature. 609(7928), 808–814.","ama":"Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov LA. A universal coupling mechanism of respiratory complex I. <i>Nature</i>. 2022;609(7928):808-814. doi:<a href=\"https://doi.org/10.1038/s41586-022-05199-7\">10.1038/s41586-022-05199-7</a>","apa":"Kravchuk, V., Petrova, O., Kampjut, D., Wojciechowska-Bason, A., Breese, Z., &#38; Sazanov, L. A. (2022). A universal coupling mechanism of respiratory complex I. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41586-022-05199-7\">https://doi.org/10.1038/s41586-022-05199-7</a>"},"quality_controlled":"1","scopus_import":"1","publication_status":"published","type":"journal_article","publisher":"Springer Nature","has_accepted_license":"1","title":"A universal coupling mechanism of respiratory complex I","date_published":"2022-09-22T00:00:00Z","day":"22","keyword":["Multidisciplinary"],"isi":1,"publication":"Nature"},{"_id":"12139","issue":"20","doi":"10.1103/physrevb.106.l201107","main_file_link":[{"open_access":"1","url":" https://doi.org/10.48550/arXiv.2207.12425"}],"volume":106,"intvolume":"       106","department":[{"_id":"MiLe"}],"date_created":"2023-01-12T12:04:43Z","date_updated":"2023-08-04T08:55:31Z","citation":{"ama":"Ghazaryan A, Kirmani A, Fernandes RM, Ghaemi P. Anomalous Shiba states in topological iron-based superconductors. <i>Physical Review B</i>. 2022;106(20). doi:<a href=\"https://doi.org/10.1103/physrevb.106.l201107\">10.1103/physrevb.106.l201107</a>","apa":"Ghazaryan, A., Kirmani, A., Fernandes, R. M., &#38; Ghaemi, P. (2022). Anomalous Shiba states in topological iron-based superconductors. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevb.106.l201107\">https://doi.org/10.1103/physrevb.106.l201107</a>","ista":"Ghazaryan A, Kirmani A, Fernandes RM, Ghaemi P. 2022. Anomalous Shiba states in topological iron-based superconductors. Physical Review B. 106(20), L201107.","chicago":"Ghazaryan, Areg, Ammar Kirmani, Rafael M. Fernandes, and Pouyan Ghaemi. “Anomalous Shiba States in Topological Iron-Based Superconductors.” <i>Physical Review B</i>. American Physical Society, 2022. <a href=\"https://doi.org/10.1103/physrevb.106.l201107\">https://doi.org/10.1103/physrevb.106.l201107</a>.","short":"A. Ghazaryan, A. Kirmani, R.M. Fernandes, P. Ghaemi, Physical Review B 106 (2022).","mla":"Ghazaryan, Areg, et al. “Anomalous Shiba States in Topological Iron-Based Superconductors.” <i>Physical Review B</i>, vol. 106, no. 20, L201107, American Physical Society, 2022, doi:<a href=\"https://doi.org/10.1103/physrevb.106.l201107\">10.1103/physrevb.106.l201107</a>.","ieee":"A. Ghazaryan, A. Kirmani, R. M. Fernandes, and P. Ghaemi, “Anomalous Shiba states in topological iron-based superconductors,” <i>Physical Review B</i>, vol. 106, no. 20. American Physical Society, 2022."},"acknowledgement":"We thank Armin Rahmani, Andrey V. Chubukov, Jay D. Sau and Ruixing Zhang for fruitful discussions. AK and PG are supported by NSF-DMR2037996. PG also acknowledges support from NSF-DMR1824265. RMF was supported by the U. S. Department of Energy, Office\r\nof Science, Basic Energy Sciences, Materials Sciences and Engineering Division, under Award No. DE-SC0020045. Part of this work was performed at the Aspen Center for Physics, which is supported by National Science Foundation grant PHY-1607611. ","article_type":"original","month":"11","publisher":"American Physical Society","type":"journal_article","publication_status":"published","quality_controlled":"1","scopus_import":"1","arxiv":1,"publication":"Physical Review B","isi":1,"day":"15","date_published":"2022-11-15T00:00:00Z","title":"Anomalous Shiba states in topological iron-based superconductors","year":"2022","publication_identifier":{"issn":["2469-9950"],"eissn":["2469-9969"]},"status":"public","oa_version":"Preprint","author":[{"last_name":"Ghazaryan","full_name":"Ghazaryan, Areg","orcid":"0000-0001-9666-3543","id":"4AF46FD6-F248-11E8-B48F-1D18A9856A87","first_name":"Areg"},{"first_name":"Ammar","last_name":"Kirmani","full_name":"Kirmani, Ammar"},{"first_name":"Rafael M.","full_name":"Fernandes, Rafael M.","last_name":"Fernandes"},{"full_name":"Ghaemi, Pouyan","last_name":"Ghaemi","first_name":"Pouyan"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","abstract":[{"lang":"eng","text":"We demonstrate the formation of robust zero-energy modes close to magnetic impurities in the iron-based superconductor FeSe1-z Tez. We find that the Zeeman field generated by the impurity favors a spin-triplet interorbital pairing as opposed to the spin-singlet intraorbital pairing prevalent in the bulk. The preferred spin-triplet pairing preserves time-reversal symmetry and is topological, as robust, topologically protected zero modes emerge at the boundary between regions with different pairing states. Moreover, the zero modes form Kramers doublets that are insensitive to the direction of the spin polarization or to the separation between impurities. We argue that our theoretical results are consistent with recent experimental measurements on FeSe1-z Tez."}],"article_processing_charge":"No","external_id":{"arxiv":["2207.12425"],"isi":["000893171800001"]},"article_number":"L201107","language":[{"iso":"eng"}],"oa":1},{"file_date_updated":"2023-01-24T09:16:29Z","article_number":"1022431","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","abstract":[{"text":"Microglia are dynamic cells, constantly surveying their surroundings and interacting with neurons and synapses. Indeed, a wealth of knowledge has revealed a critical role of microglia in modulating synaptic transmission and plasticity in the developing brain. In the past decade, novel pharmacological and genetic strategies have allowed the acute removal of microglia, opening the possibility to explore and understand the role of microglia also in the adult brain. In this review, we summarized and discussed the contribution of microglia depletion strategies to the current understanding of the role of microglia on synaptic function, learning and memory, and behavior both in physiological and pathological conditions. We first described the available microglia depletion methods highlighting their main strengths and weaknesses. We then reviewed the impact of microglia depletion on structural and functional synaptic plasticity. Next, we focused our analysis on the effects of microglia depletion on behavior, including general locomotor activity, sensory perception, motor function, sociability, learning and memory both in healthy animals and animal models of disease. Finally, we integrated the findings from the reviewed studies and discussed the emerging roles of microglia on the maintenance of synaptic function, learning, memory strength and forgetfulness, and the implications of microglia depletion in models of brain disease.","lang":"eng"}],"article_processing_charge":"No","external_id":{"isi":["000886526600001"],"pmid":["36406752"]},"oa":1,"ddc":["570"],"language":[{"iso":"eng"}],"pmid":1,"publication_identifier":{"issn":["1662-5102"]},"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2022","author":[{"last_name":"Basilico","full_name":"Basilico, Bernadette","orcid":"0000-0003-1843-3173","first_name":"Bernadette","id":"36035796-5ACA-11E9-A75E-7AF2E5697425"},{"first_name":"Laura","full_name":"Ferrucci, Laura","last_name":"Ferrucci"},{"last_name":"Khan","full_name":"Khan, Azka","first_name":"Azka"},{"first_name":"Silvia","full_name":"Di Angelantonio, Silvia","last_name":"Di Angelantonio"},{"first_name":"Davide","last_name":"Ragozzino","full_name":"Ragozzino, Davide"},{"first_name":"Ingrid","full_name":"Reverte, Ingrid","last_name":"Reverte"}],"status":"public","oa_version":"Published Version","has_accepted_license":"1","publisher":"Frontiers Media","type":"journal_article","scopus_import":"1","publication_status":"published","quality_controlled":"1","publication":"Frontiers in Cellular Neuroscience","isi":1,"day":"04","license":"https://creativecommons.org/licenses/by/4.0/","keyword":["Cellular and Molecular Neuroscience"],"date_published":"2022-11-04T00:00:00Z","title":"What microglia depletion approaches tell us about the role of microglia on synaptic function and behavior","doi":"10.3389/fncel.2022.1022431","file":[{"success":1,"access_level":"open_access","relation":"main_file","date_updated":"2023-01-24T09:16:29Z","date_created":"2023-01-24T09:16:29Z","checksum":"84696213ecf99182c58a9f34b9ff2e23","file_id":"12352","content_type":"application/pdf","creator":"dernst","file_size":6399987,"file_name":"2022_FrontiersNeuroscience_Basilico.pdf"}],"volume":16,"_id":"12140","citation":{"apa":"Basilico, B., Ferrucci, L., Khan, A., Di Angelantonio, S., Ragozzino, D., &#38; Reverte, I. (2022). What microglia depletion approaches tell us about the role of microglia on synaptic function and behavior. <i>Frontiers in Cellular Neuroscience</i>. Frontiers Media. <a href=\"https://doi.org/10.3389/fncel.2022.1022431\">https://doi.org/10.3389/fncel.2022.1022431</a>","ama":"Basilico B, Ferrucci L, Khan A, Di Angelantonio S, Ragozzino D, Reverte I. What microglia depletion approaches tell us about the role of microglia on synaptic function and behavior. <i>Frontiers in Cellular Neuroscience</i>. 2022;16. doi:<a href=\"https://doi.org/10.3389/fncel.2022.1022431\">10.3389/fncel.2022.1022431</a>","ista":"Basilico B, Ferrucci L, Khan A, Di Angelantonio S, Ragozzino D, Reverte I. 2022. What microglia depletion approaches tell us about the role of microglia on synaptic function and behavior. Frontiers in Cellular Neuroscience. 16, 1022431.","chicago":"Basilico, Bernadette, Laura Ferrucci, Azka Khan, Silvia Di Angelantonio, Davide Ragozzino, and Ingrid Reverte. “What Microglia Depletion Approaches Tell Us about the Role of Microglia on Synaptic Function and Behavior.” <i>Frontiers in Cellular Neuroscience</i>. Frontiers Media, 2022. <a href=\"https://doi.org/10.3389/fncel.2022.1022431\">https://doi.org/10.3389/fncel.2022.1022431</a>.","ieee":"B. Basilico, L. Ferrucci, A. Khan, S. Di Angelantonio, D. Ragozzino, and I. Reverte, “What microglia depletion approaches tell us about the role of microglia on synaptic function and behavior,” <i>Frontiers in Cellular Neuroscience</i>, vol. 16. Frontiers Media, 2022.","short":"B. Basilico, L. Ferrucci, A. Khan, S. Di Angelantonio, D. Ragozzino, I. Reverte, Frontiers in Cellular Neuroscience 16 (2022).","mla":"Basilico, Bernadette, et al. “What Microglia Depletion Approaches Tell Us about the Role of Microglia on Synaptic Function and Behavior.” <i>Frontiers in Cellular Neuroscience</i>, vol. 16, 1022431, Frontiers Media, 2022, doi:<a href=\"https://doi.org/10.3389/fncel.2022.1022431\">10.3389/fncel.2022.1022431</a>."},"acknowledgement":"The write-up of the review was supported by Sapienza University of Rome (Fondi di Ateneo, grant numbers #MA32117A7B698029 and #PH12017270934C3C to SD), Regione Lazio (POR FSE 2014/20, grant number #19036AP000000019 to SD), Fulbright 2019 (grant number\r\n#FSP-P005556 to SD), Institute Pasteur Italia (Fondi Cenci Bolognetti #363 to DR), and Network of European Funding for Neuroscience Research (ERA-NET NEURON Transnational\r\nResearch Projects on Neurodevelopmental Disorders 2021, grant acronym #JTC2021-SHANKAstro to DR).","article_type":"original","month":"11","intvolume":"        16","department":[{"_id":"GaNo"}],"date_updated":"2023-08-04T08:56:10Z","date_created":"2023-01-12T12:04:50Z"},{"oa_version":"Published Version","status":"public","page":"2009-2017","author":[{"full_name":"Ojavee, Sven E.","last_name":"Ojavee","first_name":"Sven E."},{"first_name":"Zoltan","full_name":"Kutalik, Zoltan","last_name":"Kutalik"},{"id":"E5D42276-F5DA-11E9-8E24-6303E6697425","first_name":"Matthew Richard","orcid":"0000-0001-8982-8813","full_name":"Robinson, Matthew Richard","last_name":"Robinson"}],"year":"2022","tmp":{"image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"publication_identifier":{"issn":["0002-9297"]},"language":[{"iso":"eng"}],"ddc":["570"],"oa":1,"external_id":{"isi":["000898683500006"]},"abstract":[{"text":"Theory for liability-scale models of the underlying genetic basis of complex disease provides an important way to interpret, compare, and understand results generated from biological studies. In particular, through estimation of the liability-scale heritability (LSH), liability models facilitate an understanding and comparison of the relative importance of genetic and environmental risk factors that shape different clinically important disease outcomes. Increasingly, large-scale biobank studies that link genetic information to electronic health records, containing hundreds of disease diagnosis indicators that mostly occur infrequently within the sample, are becoming available. Here, we propose an extension of the existing liability-scale model theory suitable for estimating LSH in biobank studies of low-prevalence disease. In a simulation study, we find that our derived expression yields lower mean square error (MSE) and is less sensitive to prevalence misspecification as compared to previous transformations for diseases with  =< 2% population prevalence and LSH of =< 0.45, especially if the biobank sample prevalence is less than that of the wider population. Applying our expression to 13 diagnostic outcomes of  =< 3% prevalence in the UK Biobank study revealed important differences in LSH obtained from the different theoretical expressions that impact the conclusions made when comparing LSH across disease outcomes. This demonstrates the importance of careful consideration for estimation and prediction of low-prevalence disease outcomes and facilitates improved inference of the underlying genetic basis of  =< 2% population prevalence diseases, especially where biobank sample ascertainment results in a healthier sample population.","lang":"eng"}],"article_processing_charge":"Yes (via OA deal)","acknowledged_ssus":[{"_id":"ScienComp"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","file_date_updated":"2023-01-24T09:23:01Z","date_updated":"2023-08-04T08:56:46Z","date_created":"2023-01-12T12:05:28Z","department":[{"_id":"MaRo"}],"intvolume":"       109","month":"11","article_type":"original","acknowledgement":"This project was funded by an SNSF Eccellenza grant to M.R.R. (PCEGP3-181181), core funding from the Institute of Science and Technology Austria, and core funding from the Department of Computational Biology of the University of Lausanne. Z.K. was funded by the Swiss National Science Foundation (310030-189147). This research was supported by the Scientific Service Units (SSUs) of IST Austria through resources provided by Scientific Computing (SciComp). We would like to thank the participants of the UK Biobank.","citation":{"short":"S.E. Ojavee, Z. Kutalik, M.R. Robinson, The American Journal of Human Genetics 109 (2022) 2009–2017.","mla":"Ojavee, Sven E., et al. “Liability-Scale Heritability Estimation for Biobank Studies of Low-Prevalence Disease.” <i>The American Journal of Human Genetics</i>, vol. 109, no. 11, Elsevier, 2022, pp. 2009–17, doi:<a href=\"https://doi.org/10.1016/j.ajhg.2022.09.011\">10.1016/j.ajhg.2022.09.011</a>.","ieee":"S. E. Ojavee, Z. Kutalik, and M. R. Robinson, “Liability-scale heritability estimation for biobank studies of low-prevalence disease,” <i>The American Journal of Human Genetics</i>, vol. 109, no. 11. Elsevier, pp. 2009–2017, 2022.","chicago":"Ojavee, Sven E., Zoltan Kutalik, and Matthew Richard Robinson. “Liability-Scale Heritability Estimation for Biobank Studies of Low-Prevalence Disease.” <i>The American Journal of Human Genetics</i>. Elsevier, 2022. <a href=\"https://doi.org/10.1016/j.ajhg.2022.09.011\">https://doi.org/10.1016/j.ajhg.2022.09.011</a>.","ista":"Ojavee SE, Kutalik Z, Robinson MR. 2022. Liability-scale heritability estimation for biobank studies of low-prevalence disease. The American Journal of Human Genetics. 109(11), 2009–2017.","ama":"Ojavee SE, Kutalik Z, Robinson MR. Liability-scale heritability estimation for biobank studies of low-prevalence disease. <i>The American Journal of Human Genetics</i>. 2022;109(11):2009-2017. doi:<a href=\"https://doi.org/10.1016/j.ajhg.2022.09.011\">10.1016/j.ajhg.2022.09.011</a>","apa":"Ojavee, S. E., Kutalik, Z., &#38; Robinson, M. R. (2022). Liability-scale heritability estimation for biobank studies of low-prevalence disease. <i>The American Journal of Human Genetics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ajhg.2022.09.011\">https://doi.org/10.1016/j.ajhg.2022.09.011</a>"},"issue":"11","_id":"12142","volume":109,"file":[{"file_name":"2022_AJHG_Ojavee.pdf","file_size":705195,"creator":"dernst","content_type":"application/pdf","success":1,"date_created":"2023-01-24T09:23:01Z","date_updated":"2023-01-24T09:23:01Z","relation":"main_file","access_level":"open_access","checksum":"4cd7f12bfe21a8237bb095eedfa26361","file_id":"12353"}],"project":[{"_id":"9B8D11D6-BA93-11EA-9121-9846C619BF3A","name":"Improving estimation and prediction of common complex disease risk","grant_number":"PCEGP3_181181"}],"doi":"10.1016/j.ajhg.2022.09.011","date_published":"2022-11-03T00:00:00Z","title":"Liability-scale heritability estimation for biobank studies of low-prevalence disease","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","day":"03","keyword":["Genetics (clinical)","Genetics"],"isi":1,"publication":"The American Journal of Human Genetics","publication_status":"published","quality_controlled":"1","type":"journal_article","scopus_import":"1","publisher":"Elsevier","has_accepted_license":"1"},{"page":"4064-4079.e13","author":[{"first_name":"David","full_name":"Zapletal, David","last_name":"Zapletal"},{"first_name":"Eliska","last_name":"Taborska","full_name":"Taborska, Eliska"},{"full_name":"Pasulka, Josef","last_name":"Pasulka","first_name":"Josef"},{"last_name":"Malik","full_name":"Malik, Radek","first_name":"Radek"},{"full_name":"Kubicek, Karel","last_name":"Kubicek","first_name":"Karel"},{"full_name":"Zanova, Martina","last_name":"Zanova","first_name":"Martina"},{"first_name":"Christian","last_name":"Much","full_name":"Much, Christian"},{"first_name":"Marek","last_name":"Sebesta","full_name":"Sebesta, Marek"},{"first_name":"Valeria","last_name":"Buccheri","full_name":"Buccheri, Valeria"},{"first_name":"Filip","last_name":"Horvat","full_name":"Horvat, Filip"},{"full_name":"Jenickova, Irena","last_name":"Jenickova","first_name":"Irena"},{"full_name":"Prochazkova, Michaela","last_name":"Prochazkova","first_name":"Michaela"},{"first_name":"Jan","full_name":"Prochazka, Jan","last_name":"Prochazka"},{"first_name":"Matyas","full_name":"Pinkas, Matyas","last_name":"Pinkas"},{"first_name":"Jiri","last_name":"Novacek","full_name":"Novacek, Jiri"},{"first_name":"Diego F.","last_name":"Joseph","full_name":"Joseph, Diego F."},{"full_name":"Sedlacek, Radislav","last_name":"Sedlacek","first_name":"Radislav"},{"orcid":"0000-0003-0893-7036","last_name":"Bernecky","full_name":"Bernecky, Carrie A","id":"2CB9DFE2-F248-11E8-B48F-1D18A9856A87","first_name":"Carrie A"},{"full_name":"O’Carroll, Dónal","last_name":"O’Carroll","first_name":"Dónal"},{"full_name":"Stefl, Richard","last_name":"Stefl","first_name":"Richard"},{"last_name":"Svoboda","full_name":"Svoboda, Petr","first_name":"Petr"}],"status":"public","oa_version":"Published Version","publication_identifier":{"issn":["1097-2765"]},"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2022","oa":1,"ddc":["570"],"language":[{"iso":"eng"}],"pmid":1,"file_date_updated":"2023-01-24T09:29:02Z","article_processing_charge":"No","abstract":[{"lang":"eng","text":"MicroRNA (miRNA) and RNA interference (RNAi) pathways rely on small RNAs produced by Dicer endonucleases. Mammalian Dicer primarily supports the essential gene-regulating miRNA pathway, but how it is specifically adapted to miRNA biogenesis is unknown. We show that the adaptation entails a unique structural role of Dicer’s DExD/H helicase domain. Although mice tolerate loss of its putative ATPase function, the complete absence of the domain is lethal because it assures high-fidelity miRNA biogenesis. Structures of murine Dicer⋅miRNA precursor complexes revealed that the DExD/H domain has a helicase-unrelated structural function. It locks Dicer in a closed state, which facilitates miRNA precursor selection. Transition to a cleavage-competent open state is stimulated by Dicer-binding protein TARBP2. Absence of the DExD/H domain or its mutations unlocks the closed state, reduces substrate selectivity, and activates RNAi. Thus, the DExD/H domain structurally contributes to mammalian miRNA biogenesis and underlies mechanistical partitioning of miRNA and RNAi pathways."}],"acknowledged_ssus":[{"_id":"EM-Fac"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"pmid":["36332606"],"isi":["000898565300011"]},"acknowledgement":"We thank Kristian Vlahovicek (University of Zagreb) for support of bioinformatics analyses and Vladimir Benes (EMBL Sequencing Facility) and Genomics and Bioinformatics Core Facility at the Institute of Molecular Genetics for help with RNA sequencing. The main funding was provided by the Czech Science Foundation (EXPRO grant 20-03950X to P.S. and 22-19896S to R. Stefl). Early stages of the work were supported by European Research Council grants under the European Union’s Horizon 2020 Research and Innovation Programme (grants 647403 to P.S. and 649030 to R. Stefl). V.B., D.F.J., and F.H. were in part supported by PhD student fellowships from the Charles University; this work will be in part fulfilling requirements for a PhD degree as “school work.” Funding of D.Z. included the OP RDE project “Internal Grant Agency of Masaryk University” no. CZ.02.2.69/0.0/0.0/19_073/0016943. The Ministry of Education, Youth, and Sports of the Czech Republic (MEYS CR) provided institutional support for CEITEC 2020 project LQ1601. For technical support, we acknowledge EMBL Monterotondo’s genome engineering and transgenic core facilities, the Czech Centre for Phenogenomics at the Institute of Molecular Genetics (supported by RVO 68378050 from the Czech Academy of Sciences and LM2018126 and CZ.02.1.01/0.0/0.0/18_046/0015861 CCP Infrastructure Upgrade II from MEYS CR), the Cryo-EM and Proteomics Core Facilities (CEITEC, Masaryk University) supported by the CIISB research infrastructure (LM2018127 from MEYS CR), and support from the Scientific Service Units of ISTA through resources from the Electron Microscopy Facility. Computational resources included e-Infrastruktura CZ (LM2018140) and ELIXIR-CZ (LM2018131) projects by MEYS CR and the Croatian National Centres of Research Excellence in Personalized Healthcare (#KK.01.1.1.01.0010) and Data Science and Advanced Cooperative Systems (#KK.01.1.1.01.0009) projects funded by the European Structural and Investment Funds grants.","citation":{"chicago":"Zapletal, David, Eliska Taborska, Josef Pasulka, Radek Malik, Karel Kubicek, Martina Zanova, Christian Much, et al. “Structural and Functional Basis of Mammalian MicroRNA Biogenesis by Dicer.” <i>Molecular Cell</i>. Elsevier, 2022. <a href=\"https://doi.org/10.1016/j.molcel.2022.10.010\">https://doi.org/10.1016/j.molcel.2022.10.010</a>.","short":"D. Zapletal, E. Taborska, J. Pasulka, R. Malik, K. Kubicek, M. Zanova, C. Much, M. Sebesta, V. Buccheri, F. Horvat, I. Jenickova, M. Prochazkova, J. Prochazka, M. Pinkas, J. Novacek, D.F. Joseph, R. Sedlacek, C. Bernecky, D. O’Carroll, R. Stefl, P. Svoboda, Molecular Cell 82 (2022) 4064–4079.e13.","mla":"Zapletal, David, et al. “Structural and Functional Basis of Mammalian MicroRNA Biogenesis by Dicer.” <i>Molecular Cell</i>, vol. 82, no. 21, Elsevier, 2022, p. 4064–4079.e13, doi:<a href=\"https://doi.org/10.1016/j.molcel.2022.10.010\">10.1016/j.molcel.2022.10.010</a>.","ieee":"D. Zapletal <i>et al.</i>, “Structural and functional basis of mammalian microRNA biogenesis by Dicer,” <i>Molecular Cell</i>, vol. 82, no. 21. Elsevier, p. 4064–4079.e13, 2022.","ama":"Zapletal D, Taborska E, Pasulka J, et al. Structural and functional basis of mammalian microRNA biogenesis by Dicer. <i>Molecular Cell</i>. 2022;82(21):4064-4079.e13. doi:<a href=\"https://doi.org/10.1016/j.molcel.2022.10.010\">10.1016/j.molcel.2022.10.010</a>","apa":"Zapletal, D., Taborska, E., Pasulka, J., Malik, R., Kubicek, K., Zanova, M., … Svoboda, P. (2022). Structural and functional basis of mammalian microRNA biogenesis by Dicer. <i>Molecular Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.molcel.2022.10.010\">https://doi.org/10.1016/j.molcel.2022.10.010</a>","ista":"Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. 82(21), 4064–4079.e13."},"article_type":"original","month":"11","intvolume":"        82","date_created":"2023-01-12T12:05:36Z","date_updated":"2023-08-04T08:57:17Z","department":[{"_id":"CaBe"}],"doi":"10.1016/j.molcel.2022.10.010","volume":82,"file":[{"creator":"dernst","file_size":7368534,"file_name":"2022_MolecularCell_Zapletal.pdf","success":1,"checksum":"999e443b54e4fdaa2542ca5a97619731","file_id":"12354","access_level":"open_access","relation":"main_file","date_created":"2023-01-24T09:29:02Z","date_updated":"2023-01-24T09:29:02Z","content_type":"application/pdf"}],"_id":"12143","issue":"21","isi":1,"publication":"Molecular Cell","date_published":"2022-11-03T00:00:00Z","title":"Structural and functional basis of mammalian microRNA biogenesis by Dicer","keyword":["Cell Biology","Molecular Biology"],"day":"03","has_accepted_license":"1","publisher":"Elsevier","publication_status":"published","quality_controlled":"1","scopus_import":"1","type":"journal_article"},{"date_published":"2022-11-03T00:00:00Z","title":"Adenylate cyclase activity of TIR1/AFB auxin receptors in plants","day":"03","isi":1,"publication":"Nature","publication_status":"published","quality_controlled":"1","scopus_import":"1","type":"journal_article","publisher":"Springer Nature","month":"11","article_type":"original","acknowledgement":"This research was supported by the Lab Support Facility (LSF) and the Imaging and Optics Facility (IOF) of IST Austria. We thank C. Gehring for suggestions and advice; and K. U. Torii and G. Stacey for seeds and plasmids. This project was funded by a European Research Council Advanced Grant (ETAP-742985). M.F.K. and R.N. acknowledge the support of the EU MSCA-IF project CrysPINs (792329). M.K. was supported by the project POWR.03.05.00-00-Z302/17 Universitas Copernicana Thoruniensis in Futuro–IDS “Academia Copernicana”. CIDG acknowledges support from UKRI under Future Leaders Fellowship grant number MR/T020652/1.","citation":{"ista":"Qi L, Kwiatkowski M, Chen H, Hörmayer L, Sinclair SA, Zou M, del Genio CI, Kubeš MF, Napier R, Jaworski K, Friml J. 2022. Adenylate cyclase activity of TIR1/AFB auxin receptors in plants. Nature. 611(7934), 133–138.","apa":"Qi, L., Kwiatkowski, M., Chen, H., Hörmayer, L., Sinclair, S. A., Zou, M., … Friml, J. (2022). Adenylate cyclase activity of TIR1/AFB auxin receptors in plants. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41586-022-05369-7\">https://doi.org/10.1038/s41586-022-05369-7</a>","ama":"Qi L, Kwiatkowski M, Chen H, et al. Adenylate cyclase activity of TIR1/AFB auxin receptors in plants. <i>Nature</i>. 2022;611(7934):133-138. doi:<a href=\"https://doi.org/10.1038/s41586-022-05369-7\">10.1038/s41586-022-05369-7</a>","ieee":"L. Qi <i>et al.</i>, “Adenylate cyclase activity of TIR1/AFB auxin receptors in plants,” <i>Nature</i>, vol. 611, no. 7934. Springer Nature, pp. 133–138, 2022.","short":"L. Qi, M. Kwiatkowski, H. Chen, L. Hörmayer, S.A. Sinclair, M. Zou, C.I. del Genio, M.F. Kubeš, R. Napier, K. Jaworski, J. Friml, Nature 611 (2022) 133–138.","mla":"Qi, Linlin, et al. “Adenylate Cyclase Activity of TIR1/AFB Auxin Receptors in Plants.” <i>Nature</i>, vol. 611, no. 7934, Springer Nature, 2022, pp. 133–38, doi:<a href=\"https://doi.org/10.1038/s41586-022-05369-7\">10.1038/s41586-022-05369-7</a>.","chicago":"Qi, Linlin, Mateusz Kwiatkowski, Huihuang Chen, Lukas Hörmayer, Scott A Sinclair, Minxia Zou, Charo I. del Genio, et al. “Adenylate Cyclase Activity of TIR1/AFB Auxin Receptors in Plants.” <i>Nature</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s41586-022-05369-7\">https://doi.org/10.1038/s41586-022-05369-7</a>."},"date_created":"2023-01-12T12:06:05Z","date_updated":"2023-10-03T11:04:53Z","department":[{"_id":"JiFr"}],"intvolume":"       611","volume":611,"main_file_link":[{"open_access":"1","url":"http://wrap.warwick.ac.uk/168325/1/WRAP-denylate-cyclase-activity-TIR1-AFB-auxin-receptors-root-growth-22.pdf"}],"project":[{"_id":"261099A6-B435-11E9-9278-68D0E5697425","grant_number":"742985","name":"Tracing Evolution of Auxin Transport and Polarity in Plants","call_identifier":"H2020"}],"doi":"10.1038/s41586-022-05369-7","issue":"7934","_id":"12144","oa":1,"pmid":1,"language":[{"iso":"eng"}],"external_id":{"pmid":["36289340"],"isi":["000875061600013"]},"abstract":[{"lang":"eng","text":"The phytohormone auxin is the major coordinative signal in plant development1, mediating transcriptional reprogramming by a well-established canonical signalling pathway. TRANSPORT INHIBITOR RESPONSE 1 (TIR1)/AUXIN-SIGNALING F-BOX (AFB) auxin receptors are F-box subunits of ubiquitin ligase complexes. In response to auxin, they associate with Aux/IAA transcriptional repressors and target them for degradation via ubiquitination2,3. Here we identify adenylate cyclase (AC) activity as an additional function of TIR1/AFB receptors across land plants. Auxin, together with Aux/IAAs, stimulates cAMP production. Three separate mutations in the AC motif of the TIR1 C-terminal region, all of which abolish the AC activity, each render TIR1 ineffective in mediating gravitropism and sustained auxin-induced root growth inhibition, and also affect auxin-induced transcriptional regulation. These results highlight the importance of TIR1/AFB AC activity in canonical auxin signalling. They also identify a unique phytohormone receptor cassette combining F-box and AC motifs, and the role of cAMP as a second messenger in plants."}],"article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledged_ssus":[{"_id":"LifeSc"},{"_id":"Bio"}],"page":"133-138","author":[{"full_name":"Qi, Linlin","last_name":"Qi","orcid":"0000-0001-5187-8401","first_name":"Linlin","id":"44B04502-A9ED-11E9-B6FC-583AE6697425"},{"first_name":"Mateusz","last_name":"Kwiatkowski","full_name":"Kwiatkowski, Mateusz"},{"first_name":"Huihuang","id":"83c96512-15b2-11ec-abd3-b7eede36184f","full_name":"Chen, Huihuang","last_name":"Chen"},{"last_name":"Hörmayer","full_name":"Hörmayer, Lukas","orcid":"0000-0001-8295-2926","first_name":"Lukas","id":"2EEE7A2A-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0002-4566-0593","last_name":"Sinclair","full_name":"Sinclair, Scott A","first_name":"Scott A","id":"2D99FE6A-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Zou, Minxia","last_name":"Zou","first_name":"Minxia","id":"5c243f41-03f3-11ec-841c-96faf48a7ef9"},{"first_name":"Charo I.","full_name":"del Genio, Charo I.","last_name":"del Genio"},{"first_name":"Martin F.","full_name":"Kubeš, Martin F.","last_name":"Kubeš"},{"full_name":"Napier, Richard","last_name":"Napier","first_name":"Richard"},{"last_name":"Jaworski","full_name":"Jaworski, Krzysztof","first_name":"Krzysztof"},{"first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jiří","last_name":"Friml","orcid":"0000-0002-8302-7596"}],"oa_version":"Submitted Version","status":"public","ec_funded":1,"publication_identifier":{"eissn":["1476-4687"],"issn":["0028-0836"]},"year":"2022"},{"status":"public","oa_version":"Preprint","related_material":{"link":[{"url":"https://doi.org/10.1134/s1560354722060107","relation":"erratum"}]},"author":[{"orcid":"0000-0003-2640-4049","full_name":"Koudjinan, Edmond","last_name":"Koudjinan","id":"52DF3E68-AEFA-11EA-95A4-124A3DDC885E","first_name":"Edmond"},{"id":"FE553552-CDE8-11E9-B324-C0EBE5697425","first_name":"Vadim","last_name":"Kaloshin","full_name":"Kaloshin, Vadim","orcid":"0000-0002-6051-2628"}],"page":"525-537","year":"2022","publication_identifier":{"eissn":["1468-4845"],"issn":["1560-3547"]},"ec_funded":1,"language":[{"iso":"eng"}],"oa":1,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","abstract":[{"text":"In the class of strictly convex smooth boundaries each of which has no strip around its boundary foliated by invariant curves, we prove that the Taylor coefficients of the “normalized” Mather’s β-function are invariant under C∞-conjugacies. In contrast, we prove that any two elliptic billiard maps are C0-conjugate near their respective boundaries, and C∞-conjugate, near the boundary and away from a line passing through the center of the underlying ellipse. We also prove that, if the billiard maps corresponding to two ellipses are topologically conjugate, then the two ellipses are similar.","lang":"eng"}],"article_processing_charge":"No","external_id":{"isi":["000865267300002"],"arxiv":["2105.14640"]},"intvolume":"        27","department":[{"_id":"VaKa"}],"date_created":"2023-01-12T12:06:49Z","date_updated":"2023-08-04T08:59:14Z","citation":{"mla":"Koudjinan, Edmond, and Vadim Kaloshin. “On Some Invariants of Birkhoff Billiards under Conjugacy.” <i>Regular and Chaotic Dynamics</i>, vol. 27, no. 6, Springer Nature, 2022, pp. 525–37, doi:<a href=\"https://doi.org/10.1134/S1560354722050021\">10.1134/S1560354722050021</a>.","short":"E. Koudjinan, V. Kaloshin, Regular and Chaotic Dynamics 27 (2022) 525–537.","ieee":"E. Koudjinan and V. Kaloshin, “On some invariants of Birkhoff billiards under conjugacy,” <i>Regular and Chaotic Dynamics</i>, vol. 27, no. 6. Springer Nature, pp. 525–537, 2022.","chicago":"Koudjinan, Edmond, and Vadim Kaloshin. “On Some Invariants of Birkhoff Billiards under Conjugacy.” <i>Regular and Chaotic Dynamics</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1134/S1560354722050021\">https://doi.org/10.1134/S1560354722050021</a>.","ista":"Koudjinan E, Kaloshin V. 2022. On some invariants of Birkhoff billiards under conjugacy. Regular and Chaotic Dynamics. 27(6), 525–537.","ama":"Koudjinan E, Kaloshin V. On some invariants of Birkhoff billiards under conjugacy. <i>Regular and Chaotic Dynamics</i>. 2022;27(6):525-537. doi:<a href=\"https://doi.org/10.1134/S1560354722050021\">10.1134/S1560354722050021</a>","apa":"Koudjinan, E., &#38; Kaloshin, V. (2022). On some invariants of Birkhoff billiards under conjugacy. <i>Regular and Chaotic Dynamics</i>. Springer Nature. <a href=\"https://doi.org/10.1134/S1560354722050021\">https://doi.org/10.1134/S1560354722050021</a>"},"acknowledgement":"We are grateful to the anonymous referees for their careful reading and valuable remarks and\r\ncomments which helped to improve the paper significantly. We gratefully acknowledge support from the European Research Council (ERC) through the Advanced Grant “SPERIG” (#885707).","month":"10","article_type":"original","_id":"12145","issue":"6","doi":"10.1134/S1560354722050021","project":[{"_id":"9B8B92DE-BA93-11EA-9121-9846C619BF3A","call_identifier":"H2020","name":"Spectral rigidity and integrability for billiards and geodesic flows","grant_number":"885707"}],"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2105.14640","open_access":"1"}],"volume":27,"publication":"Regular and Chaotic Dynamics","isi":1,"day":"03","keyword":["Mechanical Engineering","Applied Mathematics","Mathematical Physics","Modeling and Simulation","Statistical and Nonlinear Physics","Mathematics (miscellaneous)"],"date_published":"2022-10-03T00:00:00Z","title":"On some invariants of Birkhoff billiards under conjugacy","publisher":"Springer Nature","quality_controlled":"1","type":"journal_article","scopus_import":"1","publication_status":"published","arxiv":1},{"author":[{"last_name":"Wang","full_name":"Wang, B.","first_name":"B."},{"orcid":"0000-0001-6572-0621","full_name":"Ayats López, Roger","last_name":"Ayats López","first_name":"Roger","id":"ab77522d-073b-11ed-8aff-e71b39258362"},{"first_name":"A.","full_name":"Meseguer, A.","last_name":"Meseguer"},{"full_name":"Marques, F.","last_name":"Marques","first_name":"F."}],"status":"public","oa_version":"Submitted Version","publication_identifier":{"issn":["1070-6631"],"eissn":["1089-7666"]},"year":"2022","oa":1,"language":[{"iso":"eng"}],"article_number":"114111","article_processing_charge":"No","abstract":[{"lang":"eng","text":"In this paper, we explore the stability and dynamical relevance of a wide variety of steady, time-periodic, quasiperiodic, and chaotic flows arising between orthogonally stretching parallel plates. We first explore the stability of all the steady flow solution families formerly identified by Ayats et al. [“Flows between orthogonally stretching parallel plates,” Phys. Fluids 33, 024103 (2021)], concluding that only the one that originates from the Stokesian approximation is actually stable. When both plates are shrinking at identical or nearly the same deceleration rates, this Stokesian flow exhibits a Hopf bifurcation that leads to stable time-periodic regimes. The resulting time-periodic orbits or flows are tracked for different Reynolds numbers and stretching rates while monitoring their Floquet exponents to identify secondary instabilities. It is found that these time-periodic flows also exhibit Neimark–Sacker bifurcations, generating stable quasiperiodic flows (tori) that may sometimes give rise to chaotic dynamics through a Ruelle–Takens–Newhouse scenario. However, chaotic dynamics is unusually observed, as the quasiperiodic flows generally become phase-locked through a resonance mechanism before a strange attractor may arise, thus restoring the time-periodicity of the flow. In this work, we have identified and tracked four different resonance regions, also known as Arnold tongues or horns. In particular, the 1 : 4 strong resonance region is explored in great detail, where the identified scenarios are in very good agreement with normal form theory. "}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","external_id":{"isi":["000880665300024"]},"acknowledgement":"This work was supported by the Spanish MINECO under Grant Nos. FIS2017-85794-P and PRX18/00179, the Spanish MICINN through Grant No. PID2020-114043GB-I00, and the\r\nGeneralitat de Catalunya under Grant No. 2017-SGR-785. B.W.’s research was also supported by the Chinese Scholarship Council through Grant CSC No. 201806440152.","citation":{"chicago":"Wang, B., Roger Ayats López, A. Meseguer, and F. Marques. “Phase-Locking Flows between Orthogonally Stretching Parallel Plates.” <i>Physics of Fluids</i>. AIP Publishing, 2022. <a href=\"https://doi.org/10.1063/5.0124152\">https://doi.org/10.1063/5.0124152</a>.","short":"B. Wang, R. Ayats López, A. Meseguer, F. Marques, Physics of Fluids 34 (2022).","mla":"Wang, B., et al. “Phase-Locking Flows between Orthogonally Stretching Parallel Plates.” <i>Physics of Fluids</i>, vol. 34, no. 11, 114111, AIP Publishing, 2022, doi:<a href=\"https://doi.org/10.1063/5.0124152\">10.1063/5.0124152</a>.","ieee":"B. Wang, R. Ayats López, A. Meseguer, and F. Marques, “Phase-locking flows between orthogonally stretching parallel plates,” <i>Physics of Fluids</i>, vol. 34, no. 11. AIP Publishing, 2022.","ama":"Wang B, Ayats López R, Meseguer A, Marques F. Phase-locking flows between orthogonally stretching parallel plates. <i>Physics of Fluids</i>. 2022;34(11). doi:<a href=\"https://doi.org/10.1063/5.0124152\">10.1063/5.0124152</a>","apa":"Wang, B., Ayats López, R., Meseguer, A., &#38; Marques, F. (2022). Phase-locking flows between orthogonally stretching parallel plates. <i>Physics of Fluids</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0124152\">https://doi.org/10.1063/5.0124152</a>","ista":"Wang B, Ayats López R, Meseguer A, Marques F. 2022. Phase-locking flows between orthogonally stretching parallel plates. Physics of Fluids. 34(11), 114111."},"article_type":"original","month":"11","intvolume":"        34","date_created":"2023-01-12T12:06:58Z","date_updated":"2023-10-03T11:07:58Z","department":[{"_id":"BjHo"}],"doi":"10.1063/5.0124152","volume":34,"main_file_link":[{"url":"https://upcommons.upc.edu/handle/2117/385635","open_access":"1"}],"_id":"12146","issue":"11","isi":1,"publication":"Physics of Fluids","title":"Phase-locking flows between orthogonally stretching parallel plates","date_published":"2022-11-04T00:00:00Z","day":"04","keyword":["Condensed Matter Physics","Fluid Flow and Transfer Processes","Mechanics of Materials","Computational Mechanics","Mechanical Engineering"],"publisher":"AIP Publishing","quality_controlled":"1","publication_status":"published","scopus_import":"1","type":"journal_article"},{"publication_status":"published","quality_controlled":"1","scopus_import":"1","type":"journal_article","publisher":"Springer Nature","has_accepted_license":"1","arxiv":1,"date_published":"2022-11-15T00:00:00Z","title":"Closed-form continuous-time neural networks","day":"15","keyword":["Artificial Intelligence","Computer Networks and Communications","Computer Vision and Pattern Recognition","Human-Computer Interaction","Software"],"isi":1,"publication":"Nature Machine Intelligence","issue":"11","_id":"12147","volume":4,"file":[{"content_type":"application/pdf","success":1,"checksum":"b4789122ce04bfb4ac042390f59aaa8b","file_id":"12355","access_level":"open_access","relation":"main_file","date_updated":"2023-01-24T09:49:44Z","date_created":"2023-01-24T09:49:44Z","file_name":"2022_NatureMachineIntelligence_Hasani.pdf","file_size":3259553,"creator":"dernst"}],"project":[{"call_identifier":"FWF","name":"The Wittgenstein Prize","grant_number":"Z211","_id":"25F42A32-B435-11E9-9278-68D0E5697425"}],"doi":"10.1038/s42256-022-00556-7","date_updated":"2023-08-04T09:00:10Z","date_created":"2023-01-12T12:07:21Z","department":[{"_id":"ToHe"}],"intvolume":"         4","month":"11","article_type":"original","acknowledgement":"This research was supported in part by the AI2050 program at Schmidt Futures (grant G-22-63172), the Boeing Company, and the United States Air Force Research Laboratory and the United States Air Force Artificial Intelligence Accelerator and was accomplished under cooperative agreement number FA8750-19-2-1000. The views and conclusions contained in this document are those of the authors and should not be interpreted as representing the official policies, either expressed or implied, of the United States Air Force or the U.S. Government. The U.S. Government is authorized to reproduce and distribute reprints for Government purposes, notwithstanding any copyright notation herein. This work was further supported by The Boeing Company and Office of Naval Research grant N00014-18-1-2830. M.T. is supported by the Poul Due Jensen Foundation, grant 883901. M.L. was supported in part by the Austrian Science Fund under grant Z211-N23 (Wittgenstein Award). A.A. was supported by the National Science Foundation Graduate Research Fellowship Program. We thank T.-H. Wang, P. Kao, M. Chahine, W. Xiao, X. Li, L. Yin and Y. Ben for useful suggestions and for testing of CfC models to confirm the results across other domains.","citation":{"chicago":"Hasani, Ramin, Mathias Lechner, Alexander Amini, Lucas Liebenwein, Aaron Ray, Max Tschaikowski, Gerald Teschl, and Daniela Rus. “Closed-Form Continuous-Time Neural Networks.” <i>Nature Machine Intelligence</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1038/s42256-022-00556-7\">https://doi.org/10.1038/s42256-022-00556-7</a>.","mla":"Hasani, Ramin, et al. “Closed-Form Continuous-Time Neural Networks.” <i>Nature Machine Intelligence</i>, vol. 4, no. 11, Springer Nature, 2022, pp. 992–1003, doi:<a href=\"https://doi.org/10.1038/s42256-022-00556-7\">10.1038/s42256-022-00556-7</a>.","short":"R. Hasani, M. Lechner, A. Amini, L. Liebenwein, A. Ray, M. Tschaikowski, G. Teschl, D. Rus, Nature Machine Intelligence 4 (2022) 992–1003.","ieee":"R. Hasani <i>et al.</i>, “Closed-form continuous-time neural networks,” <i>Nature Machine Intelligence</i>, vol. 4, no. 11. Springer Nature, pp. 992–1003, 2022.","ama":"Hasani R, Lechner M, Amini A, et al. Closed-form continuous-time neural networks. <i>Nature Machine Intelligence</i>. 2022;4(11):992-1003. doi:<a href=\"https://doi.org/10.1038/s42256-022-00556-7\">10.1038/s42256-022-00556-7</a>","apa":"Hasani, R., Lechner, M., Amini, A., Liebenwein, L., Ray, A., Tschaikowski, M., … Rus, D. (2022). Closed-form continuous-time neural networks. <i>Nature Machine Intelligence</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s42256-022-00556-7\">https://doi.org/10.1038/s42256-022-00556-7</a>","ista":"Hasani R, Lechner M, Amini A, Liebenwein L, Ray A, Tschaikowski M, Teschl G, Rus D. 2022. Closed-form continuous-time neural networks. Nature Machine Intelligence. 4(11), 992–1003."},"external_id":{"arxiv":["2106.13898"],"isi":["000884215600003"]},"abstract":[{"text":"Continuous-time neural networks are a class of machine learning systems that can tackle representation learning on spatiotemporal decision-making tasks. These models are typically represented by continuous differential equations. However, their expressive power when they are deployed on computers is bottlenecked by numerical differential equation solvers. This limitation has notably slowed down the scaling and understanding of numerous natural physical phenomena such as the dynamics of nervous systems. Ideally, we would circumvent this bottleneck by solving the given dynamical system in closed form. This is known to be intractable in general. Here, we show that it is possible to closely approximate the interaction between neurons and synapses—the building blocks of natural and artificial neural networks—constructed by liquid time-constant networks efficiently in closed form. To this end, we compute a tightly bounded approximation of the solution of an integral appearing in liquid time-constant dynamics that has had no known closed-form solution so far. This closed-form solution impacts the design of continuous-time and continuous-depth neural models. For instance, since time appears explicitly in closed form, the formulation relaxes the need for complex numerical solvers. Consequently, we obtain models that are between one and five orders of magnitude faster in training and inference compared with differential equation-based counterparts. More importantly, in contrast to ordinary differential equation-based continuous networks, closed-form networks can scale remarkably well compared with other deep learning instances. Lastly, as these models are derived from liquid networks, they show good performance in time-series modelling compared with advanced recurrent neural network models.","lang":"eng"}],"article_processing_charge":"No","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","file_date_updated":"2023-01-24T09:49:44Z","language":[{"iso":"eng"}],"ddc":["000"],"oa":1,"year":"2022","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"publication_identifier":{"issn":["2522-5839"]},"oa_version":"Published Version","status":"public","page":"992-1003","author":[{"first_name":"Ramin","last_name":"Hasani","full_name":"Hasani, Ramin"},{"id":"3DC22916-F248-11E8-B48F-1D18A9856A87","first_name":"Mathias","full_name":"Lechner, Mathias","last_name":"Lechner"},{"last_name":"Amini","full_name":"Amini, Alexander","first_name":"Alexander"},{"last_name":"Liebenwein","full_name":"Liebenwein, Lucas","first_name":"Lucas"},{"full_name":"Ray, Aaron","last_name":"Ray","first_name":"Aaron"},{"full_name":"Tschaikowski, Max","last_name":"Tschaikowski","first_name":"Max"},{"last_name":"Teschl","full_name":"Teschl, Gerald","first_name":"Gerald"},{"full_name":"Rus, Daniela","last_name":"Rus","first_name":"Daniela"}],"related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1038/s42256-022-00597-y"}]}},{"publication":"Forum of Mathematics, Sigma","isi":1,"day":"27","keyword":["Computational Mathematics","Discrete Mathematics and Combinatorics","Geometry and Topology","Mathematical Physics","Statistics and Probability","Algebra and Number Theory","Theoretical Computer Science","Analysis"],"title":"Rank-uniform local law for Wigner matrices","date_published":"2022-10-27T00:00:00Z","has_accepted_license":"1","publisher":"Cambridge University Press","publication_status":"published","scopus_import":"1","quality_controlled":"1","type":"journal_article","citation":{"chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Rank-Uniform Local Law for Wigner Matrices.” <i>Forum of Mathematics, Sigma</i>. Cambridge University Press, 2022. <a href=\"https://doi.org/10.1017/fms.2022.86\">https://doi.org/10.1017/fms.2022.86</a>.","mla":"Cipolloni, Giorgio, et al. “Rank-Uniform Local Law for Wigner Matrices.” <i>Forum of Mathematics, Sigma</i>, vol. 10, e96, Cambridge University Press, 2022, doi:<a href=\"https://doi.org/10.1017/fms.2022.86\">10.1017/fms.2022.86</a>.","short":"G. Cipolloni, L. Erdös, D.J. Schröder, Forum of Mathematics, Sigma 10 (2022).","ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “Rank-uniform local law for Wigner matrices,” <i>Forum of Mathematics, Sigma</i>, vol. 10. Cambridge University Press, 2022.","ama":"Cipolloni G, Erdös L, Schröder DJ. Rank-uniform local law for Wigner matrices. <i>Forum of Mathematics, Sigma</i>. 2022;10. doi:<a href=\"https://doi.org/10.1017/fms.2022.86\">10.1017/fms.2022.86</a>","apa":"Cipolloni, G., Erdös, L., &#38; Schröder, D. J. (2022). Rank-uniform local law for Wigner matrices. <i>Forum of Mathematics, Sigma</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/fms.2022.86\">https://doi.org/10.1017/fms.2022.86</a>","ista":"Cipolloni G, Erdös L, Schröder DJ. 2022. Rank-uniform local law for Wigner matrices. Forum of Mathematics, Sigma. 10, e96."},"acknowledgement":"L.E. acknowledges support by ERC Advanced Grant ‘RMTBeyond’ No. 101020331. D.S. acknowledges the support of Dr. Max Rössler, the Walter Haefner Foundation and the ETH Zürich Foundation.","article_type":"original","month":"10","intvolume":"        10","department":[{"_id":"LaEr"}],"date_updated":"2023-08-04T09:00:35Z","date_created":"2023-01-12T12:07:30Z","doi":"10.1017/fms.2022.86","project":[{"call_identifier":"H2020","name":"Random matrices beyond Wigner-Dyson-Mehta","grant_number":"101020331","_id":"62796744-2b32-11ec-9570-940b20777f1d"}],"file":[{"creator":"dernst","file_size":817089,"file_name":"2022_ForumMath_Cipolloni.pdf","date_created":"2023-01-24T10:02:40Z","date_updated":"2023-01-24T10:02:40Z","access_level":"open_access","relation":"main_file","file_id":"12356","checksum":"94a049aeb1eea5497aa097712a73c400","success":1,"content_type":"application/pdf"}],"volume":10,"_id":"12148","oa":1,"ddc":["510"],"language":[{"iso":"eng"}],"file_date_updated":"2023-01-24T10:02:40Z","article_number":"e96","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","article_processing_charge":"No","abstract":[{"lang":"eng","text":"We prove a general local law for Wigner matrices that optimally handles observables of arbitrary rank and thus unifies the well-known averaged and isotropic local laws. As an application, we prove a central limit theorem in quantum unique ergodicity (QUE): that is, we show that the quadratic forms of a general deterministic matrix A on the bulk eigenvectors of a Wigner matrix have approximately Gaussian fluctuation. For the bulk spectrum, we thus generalise our previous result [17] as valid for test matrices A of large rank as well as the result of Benigni and Lopatto [7] as valid for specific small-rank observables."}],"external_id":{"isi":["000873719200001"]},"author":[{"id":"42198EFA-F248-11E8-B48F-1D18A9856A87","first_name":"Giorgio","orcid":"0000-0002-4901-7992","full_name":"Cipolloni, Giorgio","last_name":"Cipolloni"},{"orcid":"0000-0001-5366-9603","last_name":"Erdös","full_name":"Erdös, László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","first_name":"László"},{"id":"408ED176-F248-11E8-B48F-1D18A9856A87","first_name":"Dominik J","orcid":"0000-0002-2904-1856","last_name":"Schröder","full_name":"Schröder, Dominik J"}],"status":"public","oa_version":"Published Version","publication_identifier":{"issn":["2050-5094"]},"ec_funded":1,"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2022"},{"year":"2022","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"publication_identifier":{"issn":["2079-4991"]},"oa_version":"Published Version","status":"public","author":[{"first_name":"Alexey","last_name":"Shuvaev","full_name":"Shuvaev, Alexey"},{"full_name":"Dziom, Uladzislau","last_name":"Dziom","orcid":"0000-0002-1648-0999","id":"6A9A37C2-8C5C-11E9-AE53-F2FDE5697425","first_name":"Uladzislau"},{"first_name":"Jan","last_name":"Gospodarič","full_name":"Gospodarič, Jan"},{"first_name":"Elena G.","full_name":"Novik, Elena G.","last_name":"Novik"},{"full_name":"Dobretsova, Alena A.","last_name":"Dobretsova","first_name":"Alena A."},{"last_name":"Mikhailov","full_name":"Mikhailov, Nikolay N.","first_name":"Nikolay N."},{"first_name":"Ze Don","last_name":"Kvon","full_name":"Kvon, Ze Don"},{"full_name":"Pimenov, Andrei","last_name":"Pimenov","first_name":"Andrei"}],"external_id":{"isi":["000834401600001"]},"abstract":[{"text":"Mercury telluride (HgTe) thin films with a critical thickness of 6.5 nm are predicted to possess a gapless Dirac-like band structure. We report a comprehensive study on gated and optically doped samples by magnetooptical spectroscopy in the THz range. The quasi-classical analysis of the cyclotron resonance allowed the mapping of the band dispersion of Dirac charge carriers in a broad range of electron and hole doping. A smooth transition through the charge neutrality point between Dirac holes and electrons was observed. An additional peak coming from a second type of holes with an almost density-independent mass of around 0.04m0 was detected in the hole-doping range and attributed to an asymmetric spin splitting of the Dirac cone. Spectroscopic evidence for disorder-induced band energy fluctuations could not be detected in present cyclotron resonance experiments.","lang":"eng"}],"article_processing_charge":"Yes","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"2492","file_date_updated":"2023-01-30T11:16:54Z","language":[{"iso":"eng"}],"ddc":["530"],"oa":1,"issue":"14","_id":"12278","volume":12,"file":[{"creator":"dernst","file_size":464840,"file_name":"2022_Nanomaterials_Shuvaev.pdf","success":1,"file_id":"12459","checksum":"efad6742f89f39a18bec63116dd689a0","date_created":"2023-01-30T11:16:54Z","relation":"main_file","access_level":"open_access","date_updated":"2023-01-30T11:16:54Z","content_type":"application/pdf"}],"doi":"10.3390/nano12142492","date_updated":"2026-07-02T09:51:59Z","date_created":"2023-01-16T10:02:31Z","department":[{"_id":"ZhAl"}],"intvolume":"        12","article_type":"original","month":"07","acknowledgement":"This work was supported by the Austrian Science Funds (W1243, I 3456-N27, I 5539-N).\r\nOpen Access Funding by the Austrian Science Fund (FWF).","citation":{"ieee":"A. Shuvaev <i>et al.</i>, “Band structure near the Dirac Point in HgTe quantum wells with critical thickness,” <i>Nanomaterials</i>, vol. 12, no. 14. MDPI, 2022.","mla":"Shuvaev, Alexey, et al. “Band Structure near the Dirac Point in HgTe Quantum Wells with Critical Thickness.” <i>Nanomaterials</i>, vol. 12, no. 14, 2492, MDPI, 2022, doi:<a href=\"https://doi.org/10.3390/nano12142492\">10.3390/nano12142492</a>.","short":"A. Shuvaev, U. Dziom, J. Gospodarič, E.G. Novik, A.A. Dobretsova, N.N. Mikhailov, Z.D. Kvon, A. Pimenov, Nanomaterials 12 (2022).","chicago":"Shuvaev, Alexey, Uladzislau Dziom, Jan Gospodarič, Elena G. Novik, Alena A. Dobretsova, Nikolay N. Mikhailov, Ze Don Kvon, and Andrei Pimenov. “Band Structure near the Dirac Point in HgTe Quantum Wells with Critical Thickness.” <i>Nanomaterials</i>. MDPI, 2022. <a href=\"https://doi.org/10.3390/nano12142492\">https://doi.org/10.3390/nano12142492</a>.","ista":"Shuvaev A, Dziom U, Gospodarič J, Novik EG, Dobretsova AA, Mikhailov NN, Kvon ZD, Pimenov A. 2022. Band structure near the Dirac Point in HgTe quantum wells with critical thickness. Nanomaterials. 12(14), 2492.","apa":"Shuvaev, A., Dziom, U., Gospodarič, J., Novik, E. G., Dobretsova, A. A., Mikhailov, N. N., … Pimenov, A. (2022). Band structure near the Dirac Point in HgTe quantum wells with critical thickness. <i>Nanomaterials</i>. MDPI. <a href=\"https://doi.org/10.3390/nano12142492\">https://doi.org/10.3390/nano12142492</a>","ama":"Shuvaev A, Dziom U, Gospodarič J, et al. Band structure near the Dirac Point in HgTe quantum wells with critical thickness. <i>Nanomaterials</i>. 2022;12(14). doi:<a href=\"https://doi.org/10.3390/nano12142492\">10.3390/nano12142492</a>"},"scopus_import":"1","type":"journal_article","publication_status":"published","quality_controlled":"1","publisher":"MDPI","has_accepted_license":"1","date_published":"2022-07-20T00:00:00Z","title":"Band structure near the Dirac Point in HgTe quantum wells with critical thickness","day":"20","keyword":["General Materials Science","General Chemical Engineering"],"isi":1,"publication":"Nanomaterials"},{"department":[{"_id":"MaKw"}],"date_updated":"2026-06-18T07:57:21Z","date_created":"2023-01-12T12:07:59Z","intvolume":"       168","month":"11","article_type":"original","citation":{"chicago":"Cooley, Oliver, M. Kang, and O. Pikhurko. “On a Question of Vera T. Sós about Size Forcing of Graphons.” <i>Acta Mathematica Hungarica</i>. Springer Nature, 2022. <a href=\"https://doi.org/10.1007/s10474-022-01265-8\">https://doi.org/10.1007/s10474-022-01265-8</a>.","ieee":"O. Cooley, M. Kang, and O. Pikhurko, “On a question of Vera T. Sós about size forcing of graphons,” <i>Acta Mathematica Hungarica</i>, vol. 168. Springer Nature, pp. 1–26, 2022.","mla":"Cooley, Oliver, et al. “On a Question of Vera T. Sós about Size Forcing of Graphons.” <i>Acta Mathematica Hungarica</i>, vol. 168, Springer Nature, 2022, pp. 1–26, doi:<a href=\"https://doi.org/10.1007/s10474-022-01265-8\">10.1007/s10474-022-01265-8</a>.","short":"O. Cooley, M. Kang, O. Pikhurko, Acta Mathematica Hungarica 168 (2022) 1–26.","apa":"Cooley, O., Kang, M., &#38; Pikhurko, O. (2022). On a question of Vera T. Sós about size forcing of graphons. <i>Acta Mathematica Hungarica</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10474-022-01265-8\">https://doi.org/10.1007/s10474-022-01265-8</a>","ama":"Cooley O, Kang M, Pikhurko O. On a question of Vera T. Sós about size forcing of graphons. <i>Acta Mathematica Hungarica</i>. 2022;168:1-26. doi:<a href=\"https://doi.org/10.1007/s10474-022-01265-8\">10.1007/s10474-022-01265-8</a>","ista":"Cooley O, Kang M, Pikhurko O. 2022. On a question of Vera T. Sós about size forcing of graphons. Acta Mathematica Hungarica. 168, 1–26."},"acknowledgement":"Supported by Austrian Science Fund (FWF) Grant I3747. Supported by ERC Advanced Grant 101020255 and Leverhulme Research Project Grant RPG-2018-424.\r\nAn extended abstract of this paper appeared in the Proceedings of the European Conference\r\non Combinatorics, Graph Theory and Applications (EuroComb 2021), CRM Research Perspectives, Springer.","_id":"12151","main_file_link":[{"url":" https://doi.org/10.48550/arXiv.2103.09114","open_access":"1"}],"volume":168,"doi":"10.1007/s10474-022-01265-8","day":"23","keyword":["graphon","k-sample","graphon forcing","graph container"],"date_published":"2022-11-23T00:00:00Z","title":"On a question of Vera T. Sós about size forcing of graphons","publication":"Acta Mathematica Hungarica","isi":1,"scopus_import":"1","type":"journal_article","quality_controlled":"1","publication_status":"published","publisher":"Springer Nature","arxiv":1,"oa_version":"Preprint","status":"public","author":[{"full_name":"Cooley, Oliver","last_name":"Cooley","first_name":"Oliver","id":"43f4ddd0-a46b-11ec-8df6-ef3703bd721d"},{"first_name":"M.","last_name":"Kang","full_name":"Kang, M."},{"first_name":"O.","full_name":"Pikhurko, O.","last_name":"Pikhurko"}],"page":"1-26","year":"2022","publication_identifier":{"eissn":["1588-2632"],"issn":["0236-5294"]},"language":[{"iso":"eng"}],"ddc":["500"],"das_tickbox":"1","oa":1,"external_id":{"isi":["000886839900006"],"arxiv":["2103.09114"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"The k-sample G(k,W) from a graphon W:[0,1]2→[0,1] is the random graph on {1,…,k}, where we sample x1,…,xk∈[0,1] uniformly at random and make each pair {i,j}⊆{1,…,k} an edge with probability W(xi,xj), with all these choices being mutually independent. Let the random variable Xk(W) be the number of edges in  G(k,W). Vera T. Sós asked in 2012 whether two graphons U, W are necessarily weakly isomorphic if the random variables Xk(U) and Xk(W) have the same distribution for every integer k≥2. This question when one of the graphons W is a constant function was answered positively by Endre Csóka and independently by Jacob Fox, Tomasz Łuczak and Vera T. Sós. Here we investigate the question when W is a 2-step graphon and prove that the answer is positive for a 3-dimensional family of such graphons. We also present some related results."}],"article_processing_charge":"No"},{"doi":"10.1103/PhysRevB.106.045302","volume":106,"file":[{"content_type":"application/pdf","date_created":"2022-08-08T06:58:22Z","relation":"main_file","access_level":"open_access","date_updated":"2022-08-08T06:58:22Z","checksum":"115aff9e0cde2f806cb26953d7262791","file_id":"11743","success":1,"file_size":774455,"file_name":"2022_PhysRevB_Dziom.pdf","creator":"dernst"}],"_id":"11737","issue":"4","acknowledgement":"This work was supported by the Austrian Science Funds (W 1243, I 3456-N27, I 5539-N).","citation":{"ieee":"U. Dziom <i>et al.</i>, “Universal transparency and asymmetric spin splitting near the Dirac point in HgTe quantum wells,” <i>Physical Review B</i>, vol. 106, no. 4. American Physical Society, 2022.","short":"U. Dziom, A. Shuvaev, J. Gospodarič, E.G. Novik, A.A. Dobretsova, N.N. Mikhailov, Z.D. Kvon, Z. Alpichshev, A. Pimenov, Physical Review B 106 (2022).","mla":"Dziom, Uladzislau, et al. “Universal Transparency and Asymmetric Spin Splitting near the Dirac Point in HgTe Quantum Wells.” <i>Physical Review B</i>, vol. 106, no. 4, 045302, American Physical Society, 2022, doi:<a href=\"https://doi.org/10.1103/PhysRevB.106.045302\">10.1103/PhysRevB.106.045302</a>.","chicago":"Dziom, Uladzislau, A. Shuvaev, J. Gospodarič, E. G. Novik, A. A. Dobretsova, N. N. Mikhailov, Z. D. Kvon, Zhanybek Alpichshev, and A. Pimenov. “Universal Transparency and Asymmetric Spin Splitting near the Dirac Point in HgTe Quantum Wells.” <i>Physical Review B</i>. American Physical Society, 2022. <a href=\"https://doi.org/10.1103/PhysRevB.106.045302\">https://doi.org/10.1103/PhysRevB.106.045302</a>.","ista":"Dziom U, Shuvaev A, Gospodarič J, Novik EG, Dobretsova AA, Mikhailov NN, Kvon ZD, Alpichshev Z, Pimenov A. 2022. Universal transparency and asymmetric spin splitting near the Dirac point in HgTe quantum wells. Physical Review B. 106(4), 045302.","apa":"Dziom, U., Shuvaev, A., Gospodarič, J., Novik, E. G., Dobretsova, A. A., Mikhailov, N. N., … Pimenov, A. (2022). Universal transparency and asymmetric spin splitting near the Dirac point in HgTe quantum wells. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.106.045302\">https://doi.org/10.1103/PhysRevB.106.045302</a>","ama":"Dziom U, Shuvaev A, Gospodarič J, et al. Universal transparency and asymmetric spin splitting near the Dirac point in HgTe quantum wells. <i>Physical Review B</i>. 2022;106(4). doi:<a href=\"https://doi.org/10.1103/PhysRevB.106.045302\">10.1103/PhysRevB.106.045302</a>"},"article_type":"original","month":"07","intvolume":"       106","date_created":"2022-08-07T22:01:58Z","date_updated":"2026-07-02T09:51:59Z","department":[{"_id":"ZhAl"}],"has_accepted_license":"1","publisher":"American Physical Society","publication_status":"published","scopus_import":"1","quality_controlled":"1","type":"journal_article","isi":1,"publication":"Physical Review B","date_published":"2022-07-15T00:00:00Z","title":"Universal transparency and asymmetric spin splitting near the Dirac point in HgTe quantum wells","day":"15","publication_identifier":{"issn":["2469-9950"],"eissn":["2469-9969"]},"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2022","author":[{"full_name":"Dziom, Uladzislau","last_name":"Dziom","orcid":"0000-0002-1648-0999","id":"6A9A37C2-8C5C-11E9-AE53-F2FDE5697425","first_name":"Uladzislau"},{"first_name":"A.","full_name":"Shuvaev, A.","last_name":"Shuvaev"},{"first_name":"J.","full_name":"Gospodarič, J.","last_name":"Gospodarič"},{"full_name":"Novik, E. G.","last_name":"Novik","first_name":"E. G."},{"first_name":"A. A.","full_name":"Dobretsova, A. A.","last_name":"Dobretsova"},{"full_name":"Mikhailov, N. N.","last_name":"Mikhailov","first_name":"N. N."},{"first_name":"Z. D.","last_name":"Kvon","full_name":"Kvon, Z. D."},{"first_name":"Zhanybek","id":"45E67A2A-F248-11E8-B48F-1D18A9856A87","full_name":"Alpichshev, Zhanybek","last_name":"Alpichshev","orcid":"0000-0002-7183-5203"},{"first_name":"A.","last_name":"Pimenov","full_name":"Pimenov, A."}],"status":"public","oa_version":"Published Version","file_date_updated":"2022-08-08T06:58:22Z","article_number":"045302","abstract":[{"text":"Spin-orbit coupling in thin HgTe quantum wells results in a relativistic-like electron band structure, making it a versatile solid state platform to observe and control nontrivial electrodynamic phenomena. Here we report an observation of universal terahertz (THz) transparency determined by fine-structure constant α≈1/137 in 6.5-nm-thick HgTe layer, close to the critical thickness separating phases with topologically different electronic band structure. Using THz spectroscopy in a magnetic field we obtain direct evidence of asymmetric spin splitting of the Dirac cone. This particle-hole asymmetry facilitates optical control of edge spin currents in the quantum wells.","lang":"eng"}],"article_processing_charge":"No","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"isi":["000834349200010"]},"oa":1,"ddc":["530"],"language":[{"iso":"eng"}]},{"publication_identifier":{"issn":["2522-0160","2363-9555"]},"year":"2021","author":[{"orcid":"0000-0002-0854-0306","full_name":"Verzobio, Matteo","last_name":"Verzobio","id":"7aa8f170-131e-11ed-88e1-a9efd01027cb","first_name":"Matteo"}],"status":"public","oa_version":"Published Version","article_number":"37","article_processing_charge":"No","abstract":[{"lang":"eng","text":"Let P and Q be two points on an elliptic curve defined over a number field K. For α∈End(E), define Bα to be the OK-integral ideal generated by the denominator of x(α(P)+Q). Let O be a subring of End(E), that is a Dedekind domain. We will study the sequence {Bα}α∈O. We will show that, for all but finitely many α∈O, the ideal Bα has a primitive divisor when P is a non-torsion point and there exist two endomorphisms g≠0 and f so that f(P)=g(Q). This is a generalization of previous results on elliptic divisibility sequences."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"language":[{"iso":"eng"}],"doi":"10.1007/s40993-021-00267-9","volume":7,"main_file_link":[{"url":"https://doi.org/10.1007/s40993-021-00267-9","open_access":"1"}],"extern":"1","_id":"12308","issue":"2","citation":{"ama":"Verzobio M. Primitive divisors of sequences associated to elliptic curves with complex multiplication. <i>Research in Number Theory</i>. 2021;7(2). doi:<a href=\"https://doi.org/10.1007/s40993-021-00267-9\">10.1007/s40993-021-00267-9</a>","apa":"Verzobio, M. (2021). Primitive divisors of sequences associated to elliptic curves with complex multiplication. <i>Research in Number Theory</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s40993-021-00267-9\">https://doi.org/10.1007/s40993-021-00267-9</a>","ista":"Verzobio M. 2021. Primitive divisors of sequences associated to elliptic curves with complex multiplication. Research in Number Theory. 7(2), 37.","chicago":"Verzobio, Matteo. “Primitive Divisors of Sequences Associated to Elliptic Curves with Complex Multiplication.” <i>Research in Number Theory</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1007/s40993-021-00267-9\">https://doi.org/10.1007/s40993-021-00267-9</a>.","short":"M. Verzobio, Research in Number Theory 7 (2021).","mla":"Verzobio, Matteo. “Primitive Divisors of Sequences Associated to Elliptic Curves with Complex Multiplication.” <i>Research in Number Theory</i>, vol. 7, no. 2, 37, Springer Nature, 2021, doi:<a href=\"https://doi.org/10.1007/s40993-021-00267-9\">10.1007/s40993-021-00267-9</a>.","ieee":"M. Verzobio, “Primitive divisors of sequences associated to elliptic curves with complex multiplication,” <i>Research in Number Theory</i>, vol. 7, no. 2. Springer Nature, 2021."},"article_type":"original","month":"05","intvolume":"         7","date_updated":"2023-05-08T12:00:17Z","date_created":"2023-01-16T11:44:39Z","publisher":"Springer Nature","scopus_import":"1","publication_status":"published","type":"journal_article","quality_controlled":"1","publication":"Research in Number Theory","title":"Primitive divisors of sequences associated to elliptic curves with complex multiplication","date_published":"2021-05-20T00:00:00Z","day":"20","keyword":["Algebra and Number Theory"]},{"day":"04","keyword":["Algebra and Number Theory"],"title":"Primitive divisors of elliptic divisibility sequences for elliptic curves with j=1728","date_published":"2021-01-04T00:00:00Z","publication":"Acta Arithmetica","publication_status":"published","quality_controlled":"1","type":"journal_article","scopus_import":"1","publisher":"Institute of Mathematics, Polish Academy of Sciences","arxiv":1,"date_updated":"2023-05-08T11:58:14Z","date_created":"2023-01-16T11:44:54Z","intvolume":"       198","month":"01","article_type":"original","citation":{"chicago":"Verzobio, Matteo. “Primitive Divisors of Elliptic Divisibility Sequences for Elliptic Curves with J=1728.” <i>Acta Arithmetica</i>. Institute of Mathematics, Polish Academy of Sciences, 2021. <a href=\"https://doi.org/10.4064/aa191016-30-7\">https://doi.org/10.4064/aa191016-30-7</a>.","short":"M. Verzobio, Acta Arithmetica 198 (2021) 129–168.","mla":"Verzobio, Matteo. “Primitive Divisors of Elliptic Divisibility Sequences for Elliptic Curves with J=1728.” <i>Acta Arithmetica</i>, vol. 198, no. 2, Institute of Mathematics, Polish Academy of Sciences, 2021, pp. 129–68, doi:<a href=\"https://doi.org/10.4064/aa191016-30-7\">10.4064/aa191016-30-7</a>.","ieee":"M. Verzobio, “Primitive divisors of elliptic divisibility sequences for elliptic curves with j=1728,” <i>Acta Arithmetica</i>, vol. 198, no. 2. Institute of Mathematics, Polish Academy of Sciences, pp. 129–168, 2021.","ama":"Verzobio M. Primitive divisors of elliptic divisibility sequences for elliptic curves with j=1728. <i>Acta Arithmetica</i>. 2021;198(2):129-168. doi:<a href=\"https://doi.org/10.4064/aa191016-30-7\">10.4064/aa191016-30-7</a>","apa":"Verzobio, M. (2021). Primitive divisors of elliptic divisibility sequences for elliptic curves with j=1728. <i>Acta Arithmetica</i>. Institute of Mathematics, Polish Academy of Sciences. <a href=\"https://doi.org/10.4064/aa191016-30-7\">https://doi.org/10.4064/aa191016-30-7</a>","ista":"Verzobio M. 2021. Primitive divisors of elliptic divisibility sequences for elliptic curves with j=1728. Acta Arithmetica. 198(2), 129–168."},"issue":"2","extern":"1","_id":"12309","volume":198,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2001.09634"}],"doi":"10.4064/aa191016-30-7","language":[{"iso":"eng"}],"oa":1,"external_id":{"arxiv":["2001.09634"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","abstract":[{"text":"Take a rational elliptic curve defined by the equation y2=x3+ax in minimal form and consider the sequence Bn of the denominators of the abscissas of the iterate of a non-torsion point. We show that B5m has a primitive divisor for every m. Then, we show how to generalize this method to the terms of the form Bmp with p a prime congruent to 1 modulo 4.","lang":"eng"}],"oa_version":"Preprint","status":"public","author":[{"id":"7aa8f170-131e-11ed-88e1-a9efd01027cb","first_name":"Matteo","last_name":"Verzobio","full_name":"Verzobio, Matteo","orcid":"0000-0002-0854-0306"}],"page":"129-168","year":"2021","publication_identifier":{"issn":["0065-1036","1730-6264"]}},{"language":[{"iso":"eng"}],"publication":"arXiv","day":"15","title":"A recurrence relation for elliptic divisibility sequences","date_published":"2021-02-15T00:00:00Z","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"In literature, there are two different definitions of elliptic divisibility\r\nsequences. The first one says that a sequence of integers $\\{h_n\\}_{n\\geq 0}$\r\nis an elliptic divisibility sequence if it verifies the recurrence relation\r\n$h_{m+n}h_{m-n}h_{r}^2=h_{m+r}h_{m-r}h_{n}^2-h_{n+r}h_{n-r}h_{m}^2$ for every\r\nnatural number $m\\geq n\\geq r$. The second definition says that a sequence of\r\nintegers $\\{\\beta_n\\}_{n\\geq 0}$ is an elliptic divisibility sequence if it is\r\nthe sequence of the square roots (chosen with an appropriate sign) of the\r\ndenominators of the abscissas of the iterates of a point on a rational elliptic\r\ncurve. It is well-known that the two sequences are not equivalent. Hence, given\r\na sequence of the denominators $\\{\\beta_n\\}_{n\\geq 0}$, in general does not\r\nhold\r\n$\\beta_{m+n}\\beta_{m-n}\\beta_{r}^2=\\beta_{m+r}\\beta_{m-r}\\beta_{n}^2-\\beta_{n+r}\\beta_{n-r}\\beta_{m}^2$\r\nfor $m\\geq n\\geq r$. We will prove that the recurrence relation above holds for\r\n$\\{\\beta_n\\}_{n\\geq 0}$ under some conditions on the indexes $m$, $n$, and $r$."}],"article_processing_charge":"No","type":"preprint","publication_status":"submitted","external_id":{"arxiv":["2102.07573"]},"arxiv":1,"article_number":"2102.07573","status":"public","oa_version":"Preprint","date_created":"2023-01-16T11:46:36Z","date_updated":"2023-02-21T10:22:57Z","citation":{"chicago":"Verzobio, Matteo. “A Recurrence Relation for Elliptic Divisibility Sequences.” <i>ArXiv</i>, n.d. <a href=\"https://doi.org/10.48550/arXiv.2102.07573\">https://doi.org/10.48550/arXiv.2102.07573</a>.","ieee":"M. Verzobio, “A recurrence relation for elliptic divisibility sequences,” <i>arXiv</i>. .","short":"M. Verzobio, ArXiv (n.d.).","mla":"Verzobio, Matteo. “A Recurrence Relation for Elliptic Divisibility Sequences.” <i>ArXiv</i>, 2102.07573, doi:<a href=\"https://doi.org/10.48550/arXiv.2102.07573\">10.48550/arXiv.2102.07573</a>.","apa":"Verzobio, M. (n.d.). A recurrence relation for elliptic divisibility sequences. <i>arXiv</i>. <a href=\"https://doi.org/10.48550/arXiv.2102.07573\">https://doi.org/10.48550/arXiv.2102.07573</a>","ama":"Verzobio M. A recurrence relation for elliptic divisibility sequences. <i>arXiv</i>. doi:<a href=\"https://doi.org/10.48550/arXiv.2102.07573\">10.48550/arXiv.2102.07573</a>","ista":"Verzobio M. A recurrence relation for elliptic divisibility sequences. arXiv, 2102.07573."},"author":[{"full_name":"Verzobio, Matteo","last_name":"Verzobio","orcid":"0000-0002-0854-0306","first_name":"Matteo","id":"7aa8f170-131e-11ed-88e1-a9efd01027cb"}],"month":"02","extern":"1","_id":"12314","year":"2021","doi":"10.48550/arXiv.2102.07573","main_file_link":[{"url":" https://doi.org/10.48550/arXiv.2102.07573","open_access":"1"}]},{"volume":126,"main_file_link":[{"url":"https://doi.org/10.1029/2021JD034911","open_access":"1"}],"doi":"10.1029/2021jd034911","issue":"23","extern":"1","_id":"12583","month":"12","article_type":"original","citation":{"ama":"Fyffe CL, Potter E, Fugger S, et al. The energy and mass balance of Peruvian Glaciers. <i>Journal of Geophysical Research: Atmospheres</i>. 2021;126(23). doi:<a href=\"https://doi.org/10.1029/2021jd034911\">10.1029/2021jd034911</a>","apa":"Fyffe, C. L., Potter, E., Fugger, S., Orr, A., Fatichi, S., Loarte, E., … Pellicciotti, F. (2021). The energy and mass balance of Peruvian Glaciers. <i>Journal of Geophysical Research: Atmospheres</i>. American Geophysical Union. <a href=\"https://doi.org/10.1029/2021jd034911\">https://doi.org/10.1029/2021jd034911</a>","ista":"Fyffe CL, Potter E, Fugger S, Orr A, Fatichi S, Loarte E, Medina K, Hellström RÅ, Bernat M, Aubry‐Wake C, Gurgiser W, Perry LB, Suarez W, Quincey DJ, Pellicciotti F. 2021. The energy and mass balance of Peruvian Glaciers. Journal of Geophysical Research: Atmospheres. 126(23), e2021JD034911.","chicago":"Fyffe, Catriona L., Emily Potter, Stefan Fugger, Andrew Orr, Simone Fatichi, Edwin Loarte, Katy Medina, et al. “The Energy and Mass Balance of Peruvian Glaciers.” <i>Journal of Geophysical Research: Atmospheres</i>. American Geophysical Union, 2021. <a href=\"https://doi.org/10.1029/2021jd034911\">https://doi.org/10.1029/2021jd034911</a>.","mla":"Fyffe, Catriona L., et al. “The Energy and Mass Balance of Peruvian Glaciers.” <i>Journal of Geophysical Research: Atmospheres</i>, vol. 126, no. 23, e2021JD034911, American Geophysical Union, 2021, doi:<a href=\"https://doi.org/10.1029/2021jd034911\">10.1029/2021jd034911</a>.","short":"C.L. Fyffe, E. Potter, S. Fugger, A. Orr, S. Fatichi, E. Loarte, K. Medina, R.Å. Hellström, M. Bernat, C. Aubry‐Wake, W. Gurgiser, L.B. Perry, W. Suarez, D.J. Quincey, F. Pellicciotti, Journal of Geophysical Research: Atmospheres 126 (2021).","ieee":"C. L. Fyffe <i>et al.</i>, “The energy and mass balance of Peruvian Glaciers,” <i>Journal of Geophysical Research: Atmospheres</i>, vol. 126, no. 23. American Geophysical Union, 2021."},"date_created":"2023-02-20T08:10:43Z","date_updated":"2023-02-28T13:31:08Z","intvolume":"       126","type":"journal_article","publication_status":"published","quality_controlled":"1","scopus_import":"1","publisher":"American Geophysical Union","title":"The energy and mass balance of Peruvian Glaciers","date_published":"2021-12-16T00:00:00Z","keyword":["Space and Planetary Science","Earth and Planetary Sciences (miscellaneous)","Atmospheric Science","Geophysics"],"day":"16","publication":"Journal of Geophysical Research: Atmospheres","publication_identifier":{"issn":["2169-897X"],"eissn":["2169-8996"]},"year":"2021","author":[{"first_name":"Catriona L.","last_name":"Fyffe","full_name":"Fyffe, Catriona L."},{"last_name":"Potter","full_name":"Potter, Emily","first_name":"Emily"},{"first_name":"Stefan","full_name":"Fugger, Stefan","last_name":"Fugger"},{"first_name":"Andrew","last_name":"Orr","full_name":"Orr, Andrew"},{"last_name":"Fatichi","full_name":"Fatichi, Simone","first_name":"Simone"},{"first_name":"Edwin","last_name":"Loarte","full_name":"Loarte, Edwin"},{"last_name":"Medina","full_name":"Medina, Katy","first_name":"Katy"},{"first_name":"Robert Å.","last_name":"Hellström","full_name":"Hellström, Robert Å."},{"first_name":"Maud","last_name":"Bernat","full_name":"Bernat, Maud"},{"full_name":"Aubry‐Wake, Caroline","last_name":"Aubry‐Wake","first_name":"Caroline"},{"full_name":"Gurgiser, Wolfgang","last_name":"Gurgiser","first_name":"Wolfgang"},{"first_name":"L. Baker","full_name":"Perry, L. Baker","last_name":"Perry"},{"full_name":"Suarez, Wilson","last_name":"Suarez","first_name":"Wilson"},{"first_name":"Duncan J.","full_name":"Quincey, Duncan J.","last_name":"Quincey"},{"first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti"}],"oa_version":"Published Version","status":"public","article_number":"e2021JD034911","abstract":[{"lang":"eng","text":"Peruvian glaciers are important contributors to dry season runoff for agriculture and hydropower, but they are at risk of disappearing due to climate change. We applied a physically based, energy balance melt model at five on-glacier sites within the Peruvian Cordilleras Blanca and Vilcanota. Net shortwave radiation dominates the energy balance, and despite this flux being higher in the dry season, melt rates are lower due to losses from net longwave radiation and the latent heat flux. The sensible heat flux is a relatively small contributor to melt energy. At three of the sites the wet season snowpack was discontinuous, forming and melting within a daily to weekly timescale, and resulting in highly variable melt rates closely related to precipitation dynamics. Cold air temperatures due to a strong La Niña year at Shallap Glacier (Cordillera Blanca) resulted in a continuous wet season snowpack, significantly reducing wet season ablation. Sublimation was most important at the highest site in the accumulation zone of the Quelccaya Ice Cap (Cordillera Vilcanota), accounting for 81% of ablation, compared to 2%–4% for the other sites. Air temperature and precipitation inputs were perturbed to investigate the climate sensitivity of the five glaciers. At the lower sites warmer air temperatures resulted in a switch from snowfall to rain, so that ablation was increased via the decrease in albedo and increase in net shortwave radiation. At the top of Quelccaya Ice Cap warming caused melting to replace sublimation so that ablation increased nonlinearly with air temperature."}],"article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"language":[{"iso":"eng"}]},{"article_processing_charge":"No","abstract":[{"lang":"eng","text":"This project explored the integrated use of satellite, ground observations and hydrological distributed models to support water resources assessment and monitoring in High Mountain Asia (HMA). Hydrological data products were generated taking advantage of the synergies of European and Chinese data assets and space-borne observation systems. Energy-budget-based glacier mass balance and hydrological models driven by satellite observations were developed. These models can be applied to describe glacier-melt contribution to river flow. Satellite hydrological data products were used for forcing, calibration, validation and data assimilation in distributed river basin models. A pilot study was carried out on the Red River basin. Multiple hydrological data products were generated using the data collected by Chinese satellites. A new Evapo-Transpiration (ET) dataset from 2000 to 2018 was generated, including plant transpiration, soil evaporation, rainfall interception loss, snow/ice sublimation and open water evaporation. Higher resolution data were used to characterize glaciers and their response to environmental forcing. These studies focused on the Parlung Zangbo Basin, where glacier facies were mapped with GaoFeng (GF), Sentinal-2/Multi-Spectral Imager (S2/MSI) and Landsat8/Operational Land Imager (L8/OLI) data. The geodetic mass balance was estimated between 2000 and 2017 with Zi-Yuan (ZY)-3 Stereo Images and the SRTM DEM. Surface velocity was studied with Landsat5/Thematic Mapper (L5/TM), L8/OLI and S2/MSI data over the period 2013–2019. An updated method was developed to improve the retrieval of glacier albedo by correcting glacier reflectance for anisotropy, and a new dataset on glacier albedo was generated for the period 2001–2020. A detailed glacier energy and mass balance model was developed with the support of field experiments at the Parlung No. 4 Glacier and the 24 K Glacier, both in the Tibetan Plateau. Besides meteorological measurements, the field experiments included glaciological and hydrological measurements. The energy balance model was formulated in terms of enthalpy for easier treatment of water phase transitions. The model was applied to assess the spatial variability in glacier melt. In the Parlung No. 4 Glacier, the accumulated glacier melt was between 1.5 and 2.5 m w.e. in the accumulation zone and between 4.5 and 6.0 m w.e. in the ablation zone, reaching 6.5 m w.e. at the terminus. The seasonality in the glacier mass balance was observed by combining intensive field campaigns with continuous automatic observations. The linkage of the glacier and snowpack mass balance with water resources in a river basin was analyzed in the Chiese (Italy) and Heihe (China) basins by developing and applying integrated hydrological models using satellite retrievals in multiple ways. The model FEST-WEB was calibrated using retrievals of Land Surface Temperature (LST) to map soil hydrological properties. A watershed model was developed by coupling ecohydrological and socioeconomic systems. Integrated modeling is supported by an updated and parallelized data assimilation system. The latter exploits retrievals of brightness temperature (Advanced Microwave Scanning Radiometer, AMSR), LST (Moderate Resolution Imaging Spectroradiometer, MODIS), precipitation (Tropical Rainfall Measuring Mission (TRMM) and FengYun (FY)-2D) and in-situ measurements. In the case study on the Red River Basin, a new algorithm has been applied to disaggregate the SMOS (Soil Moisture and Ocean Salinity) soil moisture retrievals by making use of the correlation between evaporative fraction and soil moisture."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"5122","language":[{"iso":"eng"}],"oa":1,"year":"2021","publication_identifier":{"issn":["2072-4292"]},"status":"public","oa_version":"Published Version","author":[{"last_name":"Menenti","full_name":"Menenti, Massimo","first_name":"Massimo"},{"first_name":"Xin","full_name":"Li, Xin","last_name":"Li"},{"last_name":"Jia","full_name":"Jia, Li","first_name":"Li"},{"first_name":"Kun","last_name":"Yang","full_name":"Yang, Kun"},{"last_name":"Pellicciotti","full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca"},{"first_name":"Marco","full_name":"Mancini, Marco","last_name":"Mancini"},{"first_name":"Jiancheng","last_name":"Shi","full_name":"Shi, Jiancheng"},{"first_name":"Maria José","full_name":"Escorihuela, Maria José","last_name":"Escorihuela"},{"first_name":"Chaolei","last_name":"Zheng","full_name":"Zheng, Chaolei"},{"full_name":"Chen, Qiting","last_name":"Chen","first_name":"Qiting"},{"full_name":"Lu, Jing","last_name":"Lu","first_name":"Jing"},{"first_name":"Jie","full_name":"Zhou, Jie","last_name":"Zhou"},{"first_name":"Guangcheng","last_name":"Hu","full_name":"Hu, Guangcheng"},{"last_name":"Ren","full_name":"Ren, Shaoting","first_name":"Shaoting"},{"last_name":"Zhang","full_name":"Zhang, Jing","first_name":"Jing"},{"first_name":"Qinhuo","last_name":"Liu","full_name":"Liu, Qinhuo"},{"first_name":"Yubao","full_name":"Qiu, Yubao","last_name":"Qiu"},{"first_name":"Chunlin","last_name":"Huang","full_name":"Huang, Chunlin"},{"last_name":"Zhou","full_name":"Zhou, Ji","first_name":"Ji"},{"full_name":"Han, Xujun","last_name":"Han","first_name":"Xujun"},{"full_name":"Pan, Xiaoduo","last_name":"Pan","first_name":"Xiaoduo"},{"full_name":"Li, Hongyi","last_name":"Li","first_name":"Hongyi"},{"last_name":"Wu","full_name":"Wu, Yerong","first_name":"Yerong"},{"last_name":"Ding","full_name":"Ding, Baohong","first_name":"Baohong"},{"first_name":"Wei","full_name":"Yang, Wei","last_name":"Yang"},{"last_name":"Buri","full_name":"Buri, Pascal","first_name":"Pascal"},{"first_name":"Michael J.","full_name":"McCarthy, Michael J.","last_name":"McCarthy"},{"full_name":"Miles, Evan S.","last_name":"Miles","first_name":"Evan S."},{"full_name":"Shaw, Thomas E.","last_name":"Shaw","first_name":"Thomas E."},{"full_name":"Ma, Chunfeng","last_name":"Ma","first_name":"Chunfeng"},{"full_name":"Zhou, Yanzhao","last_name":"Zhou","first_name":"Yanzhao"},{"first_name":"Chiara","last_name":"Corbari","full_name":"Corbari, Chiara"},{"first_name":"Rui","full_name":"Li, Rui","last_name":"Li"},{"first_name":"Tianjie","last_name":"Zhao","full_name":"Zhao, Tianjie"},{"first_name":"Vivien","full_name":"Stefan, Vivien","last_name":"Stefan"},{"first_name":"Qi","last_name":"Gao","full_name":"Gao, Qi"},{"last_name":"Zhang","full_name":"Zhang, Jingxiao","first_name":"Jingxiao"},{"full_name":"Xie, Qiuxia","last_name":"Xie","first_name":"Qiuxia"},{"last_name":"Wang","full_name":"Wang, Ning","first_name":"Ning"},{"first_name":"Yibo","full_name":"Sun, Yibo","last_name":"Sun"},{"first_name":"Xinyu","last_name":"Mo","full_name":"Mo, Xinyu"},{"first_name":"Junru","full_name":"Jia, Junru","last_name":"Jia"},{"first_name":"Achille Pierre","full_name":"Jouberton, Achille Pierre","last_name":"Jouberton"},{"full_name":"Kneib, Marin","last_name":"Kneib","first_name":"Marin"},{"full_name":"Fugger, Stefan","last_name":"Fugger","first_name":"Stefan"},{"full_name":"Paciolla, Nicola","last_name":"Paciolla","first_name":"Nicola"},{"first_name":"Giovanni","last_name":"Paolini","full_name":"Paolini, Giovanni"}],"publisher":"MDPI","quality_controlled":"1","publication_status":"published","scopus_import":"1","type":"journal_article","publication":"Remote Sensing","title":"Multi-source hydrological data products to monitor High Asian river basins and regional water security","date_published":"2021-12-16T00:00:00Z","day":"16","keyword":["General Earth and Planetary Sciences"],"extern":"1","_id":"12584","issue":"24","doi":"10.3390/rs13245122","volume":13,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.3390/rs13245122"}],"intvolume":"        13","date_created":"2023-02-20T08:10:49Z","date_updated":"2023-02-28T13:26:53Z","citation":{"chicago":"Menenti, Massimo, Xin Li, Li Jia, Kun Yang, Francesca Pellicciotti, Marco Mancini, Jiancheng Shi, et al. “Multi-Source Hydrological Data Products to Monitor High Asian River Basins and Regional Water Security.” <i>Remote Sensing</i>. MDPI, 2021. <a href=\"https://doi.org/10.3390/rs13245122\">https://doi.org/10.3390/rs13245122</a>.","short":"M. Menenti, X. Li, L. Jia, K. Yang, F. Pellicciotti, M. Mancini, J. Shi, M.J. Escorihuela, C. Zheng, Q. Chen, J. Lu, J. Zhou, G. Hu, S. Ren, J. Zhang, Q. Liu, Y. Qiu, C. Huang, J. Zhou, X. Han, X. Pan, H. Li, Y. Wu, B. Ding, W. Yang, P. Buri, M.J. McCarthy, E.S. Miles, T.E. Shaw, C. Ma, Y. Zhou, C. Corbari, R. Li, T. Zhao, V. Stefan, Q. Gao, J. Zhang, Q. Xie, N. Wang, Y. Sun, X. Mo, J. Jia, A.P. Jouberton, M. Kneib, S. Fugger, N. Paciolla, G. Paolini, Remote Sensing 13 (2021).","mla":"Menenti, Massimo, et al. “Multi-Source Hydrological Data Products to Monitor High Asian River Basins and Regional Water Security.” <i>Remote Sensing</i>, vol. 13, no. 24, 5122, MDPI, 2021, doi:<a href=\"https://doi.org/10.3390/rs13245122\">10.3390/rs13245122</a>.","ieee":"M. Menenti <i>et al.</i>, “Multi-source hydrological data products to monitor High Asian river basins and regional water security,” <i>Remote Sensing</i>, vol. 13, no. 24. MDPI, 2021.","ama":"Menenti M, Li X, Jia L, et al. Multi-source hydrological data products to monitor High Asian river basins and regional water security. <i>Remote Sensing</i>. 2021;13(24). doi:<a href=\"https://doi.org/10.3390/rs13245122\">10.3390/rs13245122</a>","apa":"Menenti, M., Li, X., Jia, L., Yang, K., Pellicciotti, F., Mancini, M., … Paolini, G. (2021). Multi-source hydrological data products to monitor High Asian river basins and regional water security. <i>Remote Sensing</i>. MDPI. <a href=\"https://doi.org/10.3390/rs13245122\">https://doi.org/10.3390/rs13245122</a>","ista":"Menenti M, Li X, Jia L, Yang K, Pellicciotti F, Mancini M, Shi J, Escorihuela MJ, Zheng C, Chen Q, Lu J, Zhou J, Hu G, Ren S, Zhang J, Liu Q, Qiu Y, Huang C, Zhou J, Han X, Pan X, Li H, Wu Y, Ding B, Yang W, Buri P, McCarthy MJ, Miles ES, Shaw TE, Ma C, Zhou Y, Corbari C, Li R, Zhao T, Stefan V, Gao Q, Zhang J, Xie Q, Wang N, Sun Y, Mo X, Jia J, Jouberton AP, Kneib M, Fugger S, Paciolla N, Paolini G. 2021. Multi-source hydrological data products to monitor High Asian river basins and regional water security. Remote Sensing. 13(24), 5122."},"month":"12","article_type":"letter_note"},{"extern":"1","_id":"12585","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1038/s41467-021-23073-4"}],"volume":12,"doi":"10.1038/s41467-021-23073-4","date_created":"2023-02-20T08:11:29Z","date_updated":"2023-02-28T13:21:51Z","intvolume":"        12","month":"05","article_type":"original","citation":{"ista":"Miles E, McCarthy M, Dehecq A, Kneib M, Fugger S, Pellicciotti F. 2021. Health and sustainability of glaciers in High Mountain Asia. Nature Communications. 12, 2868.","ama":"Miles E, McCarthy M, Dehecq A, Kneib M, Fugger S, Pellicciotti F. Health and sustainability of glaciers in High Mountain Asia. <i>Nature Communications</i>. 2021;12. doi:<a href=\"https://doi.org/10.1038/s41467-021-23073-4\">10.1038/s41467-021-23073-4</a>","apa":"Miles, E., McCarthy, M., Dehecq, A., Kneib, M., Fugger, S., &#38; Pellicciotti, F. (2021). Health and sustainability of glaciers in High Mountain Asia. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-021-23073-4\">https://doi.org/10.1038/s41467-021-23073-4</a>","mla":"Miles, Evan, et al. “Health and Sustainability of Glaciers in High Mountain Asia.” <i>Nature Communications</i>, vol. 12, 2868, Springer Nature, 2021, doi:<a href=\"https://doi.org/10.1038/s41467-021-23073-4\">10.1038/s41467-021-23073-4</a>.","short":"E. Miles, M. McCarthy, A. Dehecq, M. Kneib, S. Fugger, F. Pellicciotti, Nature Communications 12 (2021).","ieee":"E. Miles, M. McCarthy, A. Dehecq, M. Kneib, S. Fugger, and F. Pellicciotti, “Health and sustainability of glaciers in High Mountain Asia,” <i>Nature Communications</i>, vol. 12. Springer Nature, 2021.","chicago":"Miles, Evan, Michael McCarthy, Amaury Dehecq, Marin Kneib, Stefan Fugger, and Francesca Pellicciotti. “Health and Sustainability of Glaciers in High Mountain Asia.” <i>Nature Communications</i>. Springer Nature, 2021. <a href=\"https://doi.org/10.1038/s41467-021-23073-4\">https://doi.org/10.1038/s41467-021-23073-4</a>."},"type":"journal_article","publication_status":"published","quality_controlled":"1","scopus_import":"1","publisher":"Springer Nature","day":"17","keyword":["General Physics and Astronomy","General Biochemistry","Genetics and Molecular Biology","General Chemistry","Multidisciplinary"],"title":"Health and sustainability of glaciers in High Mountain Asia","date_published":"2021-05-17T00:00:00Z","publication":"Nature Communications","year":"2021","publication_identifier":{"issn":["2041-1723"]},"oa_version":"Published Version","status":"public","author":[{"last_name":"Miles","full_name":"Miles, Evan","first_name":"Evan"},{"first_name":"Michael","full_name":"McCarthy, Michael","last_name":"McCarthy"},{"full_name":"Dehecq, Amaury","last_name":"Dehecq","first_name":"Amaury"},{"first_name":"Marin","last_name":"Kneib","full_name":"Kneib, Marin"},{"first_name":"Stefan","last_name":"Fugger","full_name":"Fugger, Stefan"},{"last_name":"Pellicciotti","full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Glaciers in High Mountain Asia generate meltwater that supports the water needs of 250 million people, but current knowledge of annual accumulation and ablation is limited to sparse field measurements biased in location and glacier size. Here, we present altitudinally-resolved specific mass balances (surface, internal, and basal combined) for 5527 glaciers in High Mountain Asia for 2000–2016, derived by correcting observed glacier thinning patterns for mass redistribution due to ice flow. We find that 41% of glaciers accumulated mass over less than 20% of their area, and only 60% ± 10% of regional annual ablation was compensated by accumulation. Even without 21st century warming, 21% ± 1% of ice volume will be lost by 2100 due to current climatic-geometric imbalance, representing a reduction in glacier ablation into rivers of 28% ± 1%. The ablation of glaciers in the Himalayas and Tien Shan was mostly unsustainable and ice volume in these regions will reduce by at least 30% by 2100. The most important and vulnerable glacier-fed river basins (Amu Darya, Indus, Syr Darya, Tarim Interior) were supplied with >50% sustainable glacier ablation but will see long-term reductions in ice mass and glacier meltwater supply regardless of the Karakoram Anomaly."}],"article_processing_charge":"No","article_number":"2868","language":[{"iso":"eng"}],"oa":1}]