---
_id: '13388'
abstract:
- lang: eng
  text: The Inside Cover picture illustrates the fluorescent properties of a gold
    nanocluster functionalized with several copies of a red-emitting merocyanine (image
    by Ella Marushchenko). The red fluorescence can be turned on and off reversibly
    by using an external stimulus.
article_processing_charge: No
author:
- first_name: T.
  full_name: Udayabhaskararao, T.
  last_name: Udayabhaskararao
- first_name: Pintu K.
  full_name: Kundu, Pintu K.
  last_name: Kundu
- first_name: Johannes
  full_name: Ahrens, Johannes
  last_name: Ahrens
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
citation:
  ama: 'Udayabhaskararao T, Kundu PK, Ahrens J, Klajn R. <i>Inside Cover: Reversible
    Photoisomerization of Spiropyran on the Surfaces of Au25 Nanoclusters (ChemPhysChem
    12/2016)</i>. Vol 17. Wiley; 2016:1711-1711. doi:<a href="https://doi.org/10.1002/cphc.201600480">10.1002/cphc.201600480</a>'
  apa: 'Udayabhaskararao, T., Kundu, P. K., Ahrens, J., &#38; Klajn, R. (2016). <i>Inside
    cover: Reversible photoisomerization of spiropyran on the surfaces of Au25 nanoclusters
    (ChemPhysChem 12/2016)</i>. <i>ChemPhysChem</i> (Vol. 17, pp. 1711–1711). Wiley.
    <a href="https://doi.org/10.1002/cphc.201600480">https://doi.org/10.1002/cphc.201600480</a>'
  chicago: 'Udayabhaskararao, T., Pintu K. Kundu, Johannes Ahrens, and Rafal Klajn.
    <i>Inside Cover: Reversible Photoisomerization of Spiropyran on the Surfaces of
    Au25 Nanoclusters (ChemPhysChem 12/2016)</i>. <i>ChemPhysChem</i>. Vol. 17. Wiley,
    2016. <a href="https://doi.org/10.1002/cphc.201600480">https://doi.org/10.1002/cphc.201600480</a>.'
  ieee: 'T. Udayabhaskararao, P. K. Kundu, J. Ahrens, and R. Klajn, <i>Inside cover:
    Reversible photoisomerization of spiropyran on the surfaces of Au25 nanoclusters
    (ChemPhysChem 12/2016)</i>, vol. 17, no. 12. Wiley, 2016, pp. 1711–1711.'
  ista: 'Udayabhaskararao T, Kundu PK, Ahrens J, Klajn R. 2016. Inside cover: Reversible
    photoisomerization of spiropyran on the surfaces of Au25 nanoclusters (ChemPhysChem
    12/2016), Wiley,p.'
  mla: 'Udayabhaskararao, T., et al. “Inside Cover: Reversible Photoisomerization
    of Spiropyran on the Surfaces of Au25 Nanoclusters (ChemPhysChem 12/2016).” <i>ChemPhysChem</i>,
    vol. 17, no. 12, Wiley, 2016, pp. 1711–1711, doi:<a href="https://doi.org/10.1002/cphc.201600480">10.1002/cphc.201600480</a>.'
  short: 'T. Udayabhaskararao, P.K. Kundu, J. Ahrens, R. Klajn, Inside Cover: Reversible
    Photoisomerization of Spiropyran on the Surfaces of Au25 Nanoclusters (ChemPhysChem
    12/2016), Wiley, 2016.'
date_created: 2023-08-01T09:43:07Z
date_published: 2016-06-17T00:00:00Z
date_updated: 2023-08-07T12:43:38Z
day: '17'
doi: 10.1002/cphc.201600480
extern: '1'
intvolume: '        17'
issue: '12'
keyword:
- Physical and Theoretical Chemistry
- Atomic and Molecular Physics
- and Optics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1002/cphc.201600480
month: '06'
oa: 1
oa_version: Published Version
page: 1711-1711
publication: ChemPhysChem
publication_identifier:
  eissn:
  - 1439-7641
  issn:
  - 1439-4235
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: 'Inside cover: Reversible photoisomerization of spiropyran on the surfaces
  of Au25 nanoclusters (ChemPhysChem 12/2016)'
type: other_academic_publication
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2016'
...
---
_id: '13389'
abstract:
- lang: eng
  text: Au25 nanoclusters functionalized with a spiropyran molecular switch are synthesized
    via a ligand-exchange reaction at low temperature. The resulting nanoclusters
    are characterized by optical and NMR spectroscopies as well as by mass spectrometry.
    Spiropyran bound to nanoclusters isomerizes in a reversible fashion when exposed
    to UV and visible light, and its properties are similar to those of free spiropyran
    molecules in solution. The reversible photoisomerization entails the modulation
    of fluorescence as well as the light-controlled self-assembly of nanoclusters.
article_processing_charge: No
article_type: original
author:
- first_name: T.
  full_name: Udayabhaskararao, T.
  last_name: Udayabhaskararao
- first_name: Pintu K.
  full_name: Kundu, Pintu K.
  last_name: Kundu
- first_name: Johannes
  full_name: Ahrens, Johannes
  last_name: Ahrens
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
citation:
  ama: Udayabhaskararao T, Kundu PK, Ahrens J, Klajn R. Reversible photoisomerization
    of spiropyran on the surfaces of Au25 nanoclusters. <i>ChemPhysChem</i>. 2016;17(12):1805-1809.
    doi:<a href="https://doi.org/10.1002/cphc.201500897">10.1002/cphc.201500897</a>
  apa: Udayabhaskararao, T., Kundu, P. K., Ahrens, J., &#38; Klajn, R. (2016). Reversible
    photoisomerization of spiropyran on the surfaces of Au25 nanoclusters. <i>ChemPhysChem</i>.
    Wiley. <a href="https://doi.org/10.1002/cphc.201500897">https://doi.org/10.1002/cphc.201500897</a>
  chicago: Udayabhaskararao, T., Pintu K. Kundu, Johannes Ahrens, and Rafal Klajn.
    “Reversible Photoisomerization of Spiropyran on the Surfaces of Au25 Nanoclusters.”
    <i>ChemPhysChem</i>. Wiley, 2016. <a href="https://doi.org/10.1002/cphc.201500897">https://doi.org/10.1002/cphc.201500897</a>.
  ieee: T. Udayabhaskararao, P. K. Kundu, J. Ahrens, and R. Klajn, “Reversible photoisomerization
    of spiropyran on the surfaces of Au25 nanoclusters,” <i>ChemPhysChem</i>, vol.
    17, no. 12. Wiley, pp. 1805–1809, 2016.
  ista: Udayabhaskararao T, Kundu PK, Ahrens J, Klajn R. 2016. Reversible photoisomerization
    of spiropyran on the surfaces of Au25 nanoclusters. ChemPhysChem. 17(12), 1805–1809.
  mla: Udayabhaskararao, T., et al. “Reversible Photoisomerization of Spiropyran on
    the Surfaces of Au25 Nanoclusters.” <i>ChemPhysChem</i>, vol. 17, no. 12, Wiley,
    2016, pp. 1805–09, doi:<a href="https://doi.org/10.1002/cphc.201500897">10.1002/cphc.201500897</a>.
  short: T. Udayabhaskararao, P.K. Kundu, J. Ahrens, R. Klajn, ChemPhysChem 17 (2016)
    1805–1809.
date_created: 2023-08-01T09:43:18Z
date_published: 2016-06-17T00:00:00Z
date_updated: 2023-08-07T12:46:46Z
day: '17'
doi: 10.1002/cphc.201500897
extern: '1'
external_id:
  pmid:
  - '26593975'
intvolume: '        17'
issue: '12'
keyword:
- Physical and Theoretical Chemistry
- Atomic and Molecular Physics
- and Optics
language:
- iso: eng
month: '06'
oa_version: None
page: 1805-1809
pmid: 1
publication: ChemPhysChem
publication_identifier:
  eissn:
  - 1439-7641
  issn:
  - 1439-4235
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Reversible photoisomerization of spiropyran on the surfaces of Au25 nanoclusters
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2016'
...
---
_id: '10376'
abstract:
- lang: eng
  text: Nucleation processes are at the heart of a large number of phenomena, from
    cloud formation to protein crystallization. A recently emerging area where nucleation
    is highly relevant is the initiation of filamentous protein self-assembly, a process
    that has broad implications in many research areas ranging from medicine to nanotechnology.
    As such, spontaneous nucleation of protein fibrils has received much attention
    in recent years with many theoretical and experimental studies focusing on the
    underlying physical principles. In this paper we make a step forward in this direction
    and explore the early time behaviour of filamentous protein growth in the context
    of nucleation theory. We first provide an overview of the thermodynamics and kinetics
    of spontaneous nucleation of protein filaments in the presence of one relevant
    degree of freedom, namely the cluster size. In this case, we review how key kinetic
    observables, such as the reaction order of spontaneous nucleation, are directly
    related to the physical size of the critical nucleus. We then focus on the increasingly
    prominent case of filament nucleation that includes a conformational conversion
    of the nucleating building-block as an additional slow step in the nucleation
    process. Using computer simulations, we study the concentration dependence of
    the nucleation rate. We find that, under these circumstances, the reaction order
    of spontaneous nucleation with respect to the free monomer does no longer relate
    to the overall physical size of the nucleating aggregate but rather to the portion
    of the aggregate that actively participates in the conformational conversion.
    Our results thus provide a novel interpretation of the common kinetic descriptors
    of protein filament formation, including the reaction order of the nucleation
    step or the scaling exponent of lag times, and put into perspective current theoretical
    descriptions of protein aggregation.
acknowledgement: We acknowledge support from the Human Frontier Science Program and
  Emmanuel College (A.Š.), St John’s and Peterhouse Colleges (T.C.T.M.), the Swiss
  National Science Foundation (T.C.T.M.), the Biotechnology and Biological Sciences
  Research Council (T.P.J.K.), the Frances and Augustus Newman Foundation (T.P.J.K.),
  the European Research Council (T.C.T.M., T.P.J.K., and D.F.), and the Engineering
  and Physical Sciences Research Council (D.F.).
article_number: '211926'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Anđela
  full_name: Šarić, Anđela
  id: bf63d406-f056-11eb-b41d-f263a6566d8b
  last_name: Šarić
  orcid: 0000-0002-7854-2139
- first_name: Thomas C. T.
  full_name: Michaels, Thomas C. T.
  last_name: Michaels
- first_name: Alessio
  full_name: Zaccone, Alessio
  last_name: Zaccone
- first_name: Tuomas P. J.
  full_name: Knowles, Tuomas P. J.
  last_name: Knowles
- first_name: Daan
  full_name: Frenkel, Daan
  last_name: Frenkel
citation:
  ama: 'Šarić A, Michaels TCT, Zaccone A, Knowles TPJ, Frenkel D. Kinetics of spontaneous
    filament nucleation via oligomers: Insights from theory and simulation. <i>The
    Journal of Chemical Physics</i>. 2016;145(21). doi:<a href="https://doi.org/10.1063/1.4965040">10.1063/1.4965040</a>'
  apa: 'Šarić, A., Michaels, T. C. T., Zaccone, A., Knowles, T. P. J., &#38; Frenkel,
    D. (2016). Kinetics of spontaneous filament nucleation via oligomers: Insights
    from theory and simulation. <i>The Journal of Chemical Physics</i>. American Institute
    of Physics. <a href="https://doi.org/10.1063/1.4965040">https://doi.org/10.1063/1.4965040</a>'
  chicago: 'Šarić, Anđela, Thomas C. T. Michaels, Alessio Zaccone, Tuomas P. J. Knowles,
    and Daan Frenkel. “Kinetics of Spontaneous Filament Nucleation via Oligomers:
    Insights from Theory and Simulation.” <i>The Journal of Chemical Physics</i>.
    American Institute of Physics, 2016. <a href="https://doi.org/10.1063/1.4965040">https://doi.org/10.1063/1.4965040</a>.'
  ieee: 'A. Šarić, T. C. T. Michaels, A. Zaccone, T. P. J. Knowles, and D. Frenkel,
    “Kinetics of spontaneous filament nucleation via oligomers: Insights from theory
    and simulation,” <i>The Journal of Chemical Physics</i>, vol. 145, no. 21. American
    Institute of Physics, 2016.'
  ista: 'Šarić A, Michaels TCT, Zaccone A, Knowles TPJ, Frenkel D. 2016. Kinetics
    of spontaneous filament nucleation via oligomers: Insights from theory and simulation.
    The Journal of Chemical Physics. 145(21), 211926.'
  mla: 'Šarić, Anđela, et al. “Kinetics of Spontaneous Filament Nucleation via Oligomers:
    Insights from Theory and Simulation.” <i>The Journal of Chemical Physics</i>,
    vol. 145, no. 21, 211926, American Institute of Physics, 2016, doi:<a href="https://doi.org/10.1063/1.4965040">10.1063/1.4965040</a>.'
  short: A. Šarić, T.C.T. Michaels, A. Zaccone, T.P.J. Knowles, D. Frenkel, The Journal
    of Chemical Physics 145 (2016).
date_created: 2021-11-29T10:01:57Z
date_published: 2016-12-01T00:00:00Z
date_updated: 2021-11-29T10:33:11Z
day: '01'
doi: 10.1063/1.4965040
extern: '1'
external_id:
  arxiv:
  - '1610.02320'
  pmid:
  - '28799382'
intvolume: '       145'
issue: '21'
keyword:
- physical and theoretical chemistry
- general physics and astronomy
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1610.02320
month: '12'
oa: 1
oa_version: Preprint
pmid: 1
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: American Institute of Physics
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Kinetics of spontaneous filament nucleation via oligomers: Insights from theory
  and simulation'
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 145
year: '2016'
...
---
_id: '10380'
abstract:
- lang: eng
  text: Using non-equilibrium molecular dynamics simulations, it has been recently
    demonstrated that water molecules align in response to an imposed temperature
    gradient, resulting in an effective electric field. Here, we investigate how thermally
    induced fields depend on the underlying treatment of long-ranged interactions.
    For the short-ranged Wolf method and Ewald summation, we find the peak strength
    of the field to range between 2 × 107 and 5 × 107 V/m for a temperature gradient
    of 5.2 K/Å. Our value for the Wolf method is therefore an order of magnitude lower
    than the literature value [J. A. Armstrong and F. Bresme, J. Chem. Phys. 139,
    014504 (2013); J. Armstrong et al., J. Chem. Phys. 143, 036101 (2015)]. We show
    that this discrepancy can be traced back to the use of an incorrect kernel in
    the calculation of the electrostatic field. More seriously, we find that the Wolf
    method fails to predict correct molecular orientations, resulting in dipole densities
    with opposite sign to those computed using Ewald summation. By considering two
    different multipole expansions, we show that, for inhomogeneous polarisations,
    the quadrupole contribution can be significant and even outweigh the dipole contribution
    to the field. Finally, we propose a more accurate way of calculating the electrostatic
    potential and the field. In particular, we show that averaging the microscopic
    field analytically to obtain the macroscopic Maxwell field reduces the error bars
    by up to an order of magnitude. As a consequence, the simulation times required
    to reach a given statistical accuracy decrease by up to two orders of magnitude.
acknowledgement: The authors should like to dedicate this paper to the memory of Simon
  de Leeuw, who was a pioneer in the calculation of Coulomb effects in simulations.
  P.W. would like to thank the Austrian Academy of Sciences for financial support
  through a DOC Fellowship, and for covering the travel expenses for the CECAM workshop
  in Zaragoza in May 2015, where these results were first presented. P.W. would also
  like to thank Chao Zhang for pointing out the equivalence of the two expressions
  for the electric field discussed in Sec. VI D, Michiel Sprik for emphasising the
  importance of the quadrupole contribution in experimental studies of interfacial
  systems, as well as Aleks Reinhardt and other members of the Frenkel and Dellago
  groups for their advice. We further acknowledge support from the Federation of Austrian
  Industry (IV) Carinthia (P.W.), the University of Zagreb and Erasmus SMP (D. Fijan),
  the Human Frontier Science Program and Emmanuel College (A.Š.), the Austrian Science
  Fund FWF within the SFB Vicom project F41 (C.D.), and the Engineering and Physical
  Sciences Research Council Programme Grant No. EP/I001352/1 (D.F.). Additional data
  related to this publication are available at the University of Cambridge data repository
  (http://dx.doi.org/10.17863/CAM.118).
article_number: '224102'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: P.
  full_name: Wirnsberger, P.
  last_name: Wirnsberger
- first_name: D.
  full_name: Fijan, D.
  last_name: Fijan
- first_name: Anđela
  full_name: Šarić, Anđela
  id: bf63d406-f056-11eb-b41d-f263a6566d8b
  last_name: Šarić
  orcid: 0000-0002-7854-2139
- first_name: M.
  full_name: Neumann, M.
  last_name: Neumann
- first_name: C.
  full_name: Dellago, C.
  last_name: Dellago
- first_name: D.
  full_name: Frenkel, D.
  last_name: Frenkel
citation:
  ama: Wirnsberger P, Fijan D, Šarić A, Neumann M, Dellago C, Frenkel D. Non-equilibrium
    simulations of thermally induced electric fields in water. <i>The Journal of Chemical
    Physics</i>. 2016;144(22). doi:<a href="https://doi.org/10.1063/1.4953036">10.1063/1.4953036</a>
  apa: Wirnsberger, P., Fijan, D., Šarić, A., Neumann, M., Dellago, C., &#38; Frenkel,
    D. (2016). Non-equilibrium simulations of thermally induced electric fields in
    water. <i>The Journal of Chemical Physics</i>. American Institute of Physics.
    <a href="https://doi.org/10.1063/1.4953036">https://doi.org/10.1063/1.4953036</a>
  chicago: Wirnsberger, P., D. Fijan, Anđela Šarić, M. Neumann, C. Dellago, and D.
    Frenkel. “Non-Equilibrium Simulations of Thermally Induced Electric Fields in
    Water.” <i>The Journal of Chemical Physics</i>. American Institute of Physics,
    2016. <a href="https://doi.org/10.1063/1.4953036">https://doi.org/10.1063/1.4953036</a>.
  ieee: P. Wirnsberger, D. Fijan, A. Šarić, M. Neumann, C. Dellago, and D. Frenkel,
    “Non-equilibrium simulations of thermally induced electric fields in water,” <i>The
    Journal of Chemical Physics</i>, vol. 144, no. 22. American Institute of Physics,
    2016.
  ista: Wirnsberger P, Fijan D, Šarić A, Neumann M, Dellago C, Frenkel D. 2016. Non-equilibrium
    simulations of thermally induced electric fields in water. The Journal of Chemical
    Physics. 144(22), 224102.
  mla: Wirnsberger, P., et al. “Non-Equilibrium Simulations of Thermally Induced Electric
    Fields in Water.” <i>The Journal of Chemical Physics</i>, vol. 144, no. 22, 224102,
    American Institute of Physics, 2016, doi:<a href="https://doi.org/10.1063/1.4953036">10.1063/1.4953036</a>.
  short: P. Wirnsberger, D. Fijan, A. Šarić, M. Neumann, C. Dellago, D. Frenkel, The
    Journal of Chemical Physics 144 (2016).
date_created: 2021-11-29T11:08:52Z
date_published: 2016-06-10T00:00:00Z
date_updated: 2021-11-29T13:09:08Z
day: '10'
doi: 10.1063/1.4953036
extern: '1'
external_id:
  arxiv:
  - '1602.02734'
  pmid:
  - '27305991'
intvolume: '       144'
issue: '22'
keyword:
- physical and theoretical chemistry
- general physics and astronomy
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1602.02734
month: '06'
oa: 1
oa_version: Preprint
pmid: 1
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: American Institute of Physics
quality_controlled: '1'
scopus_import: '1'
status: public
title: Non-equilibrium simulations of thermally induced electric fields in water
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 144
year: '2016'
...
---
_id: '13397'
abstract:
- lang: eng
  text: Self-assembly of inorganic nanoparticles has been studied extensively for
    particles having different sizes and compositions. However, relatively little
    attention has been devoted to how the shape and surface chemistry of magnetic
    nanoparticles affects their self-assembly properties. Here, we undertook a combined
    experiment–theory study aimed at better understanding of the self-assembly of
    cubic magnetite (Fe3O4) particles. We demonstrated that, depending on the experimental
    parameters, such as the direction of the magnetic field and nanoparticle density,
    a variety of superstructures can be obtained, including one-dimensional filaments
    and helices, as well as C-shaped assemblies described here for the first time.
    Furthermore, we functionalized the surfaces of the magnetic nanocubes with light-sensitive
    ligands. Using these modified nanoparticles, we were able to achieve orthogonal
    control of self-assembly using a magnetic field and light.
article_processing_charge: No
article_type: original
author:
- first_name: Gurvinder
  full_name: Singh, Gurvinder
  last_name: Singh
- first_name: Henry
  full_name: Chan, Henry
  last_name: Chan
- first_name: T.
  full_name: Udayabhaskararao, T.
  last_name: Udayabhaskararao
- first_name: Elijah
  full_name: Gelman, Elijah
  last_name: Gelman
- first_name: Davide
  full_name: Peddis, Davide
  last_name: Peddis
- first_name: Artem
  full_name: Baskin, Artem
  last_name: Baskin
- first_name: Gregory
  full_name: Leitus, Gregory
  last_name: Leitus
- first_name: Petr
  full_name: Král, Petr
  last_name: Král
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
citation:
  ama: Singh G, Chan H, Udayabhaskararao T, et al. Magnetic field-induced self-assembly
    of iron oxide nanocubes. <i>Faraday Discussions</i>. 2015;181:403-421. doi:<a
    href="https://doi.org/10.1039/c4fd00265b">10.1039/c4fd00265b</a>
  apa: Singh, G., Chan, H., Udayabhaskararao, T., Gelman, E., Peddis, D., Baskin,
    A., … Klajn, R. (2015). Magnetic field-induced self-assembly of iron oxide nanocubes.
    <i>Faraday Discussions</i>. Royal Society of Chemistry. <a href="https://doi.org/10.1039/c4fd00265b">https://doi.org/10.1039/c4fd00265b</a>
  chicago: Singh, Gurvinder, Henry Chan, T. Udayabhaskararao, Elijah Gelman, Davide
    Peddis, Artem Baskin, Gregory Leitus, Petr Král, and Rafal Klajn. “Magnetic Field-Induced
    Self-Assembly of Iron Oxide Nanocubes.” <i>Faraday Discussions</i>. Royal Society
    of Chemistry, 2015. <a href="https://doi.org/10.1039/c4fd00265b">https://doi.org/10.1039/c4fd00265b</a>.
  ieee: G. Singh <i>et al.</i>, “Magnetic field-induced self-assembly of iron oxide
    nanocubes,” <i>Faraday Discussions</i>, vol. 181. Royal Society of Chemistry,
    pp. 403–421, 2015.
  ista: Singh G, Chan H, Udayabhaskararao T, Gelman E, Peddis D, Baskin A, Leitus
    G, Král P, Klajn R. 2015. Magnetic field-induced self-assembly of iron oxide nanocubes.
    Faraday Discussions. 181, 403–421.
  mla: Singh, Gurvinder, et al. “Magnetic Field-Induced Self-Assembly of Iron Oxide
    Nanocubes.” <i>Faraday Discussions</i>, vol. 181, Royal Society of Chemistry,
    2015, pp. 403–21, doi:<a href="https://doi.org/10.1039/c4fd00265b">10.1039/c4fd00265b</a>.
  short: G. Singh, H. Chan, T. Udayabhaskararao, E. Gelman, D. Peddis, A. Baskin,
    G. Leitus, P. Král, R. Klajn, Faraday Discussions 181 (2015) 403–421.
date_created: 2023-08-01T09:45:17Z
date_published: 2015-01-02T00:00:00Z
date_updated: 2023-08-07T13:06:23Z
day: '02'
doi: 10.1039/c4fd00265b
extern: '1'
external_id:
  pmid:
  - '25920522'
intvolume: '       181'
keyword:
- Physical and Theoretical Chemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1039/C4FD00265B
month: '01'
oa: 1
oa_version: Published Version
page: 403-421
pmid: 1
publication: Faraday Discussions
publication_identifier:
  eissn:
  - 1364-5498
  issn:
  - 1359-6640
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: Magnetic field-induced self-assembly of iron oxide nanocubes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 181
year: '2015'
...
---
_id: '13398'
article_processing_charge: No
article_type: letter_note
author:
- first_name: Yugang
  full_name: Sun, Yugang
  last_name: Sun
- first_name: Leonardo
  full_name: Scarabelli, Leonardo
  last_name: Scarabelli
- first_name: Nicholas
  full_name: Kotov, Nicholas
  last_name: Kotov
- first_name: Moritz
  full_name: Tebbe, Moritz
  last_name: Tebbe
- first_name: Xiao-Min
  full_name: Lin, Xiao-Min
  last_name: Lin
- first_name: Ward
  full_name: Brullot, Ward
  last_name: Brullot
- first_name: Lucio
  full_name: Isa, Lucio
  last_name: Isa
- first_name: Peter
  full_name: Schurtenberger, Peter
  last_name: Schurtenberger
- first_name: Helmuth
  full_name: Moehwald, Helmuth
  last_name: Moehwald
- first_name: Igor
  full_name: Fedin, Igor
  last_name: Fedin
- first_name: Orlin
  full_name: Velev, Orlin
  last_name: Velev
- first_name: Damien
  full_name: Faivre, Damien
  last_name: Faivre
- first_name: Christopher
  full_name: Sorensen, Christopher
  last_name: Sorensen
- first_name: Régine
  full_name: Perzynski, Régine
  last_name: Perzynski
- first_name: Munish
  full_name: Chanana, Munish
  last_name: Chanana
- first_name: Zhihai
  full_name: Li, Zhihai
  last_name: Li
- first_name: Fernando
  full_name: Bresme, Fernando
  last_name: Bresme
- first_name: Petr
  full_name: Král, Petr
  last_name: Král
- first_name: Emre
  full_name: Firlar, Emre
  last_name: Firlar
- first_name: David
  full_name: Schiffrin, David
  last_name: Schiffrin
- first_name: Joao Batista
  full_name: Souza Junior, Joao Batista
  last_name: Souza Junior
- first_name: Andreas
  full_name: Fery, Andreas
  last_name: Fery
- first_name: Elena
  full_name: Shevchenko, Elena
  last_name: Shevchenko
- first_name: Ozgur
  full_name: Tarhan, Ozgur
  last_name: Tarhan
- first_name: Armand Paul
  full_name: Alivisatos, Armand Paul
  last_name: Alivisatos
- first_name: Sabrina
  full_name: Disch, Sabrina
  last_name: Disch
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Suvojit
  full_name: Ghosh, Suvojit
  last_name: Ghosh
citation:
  ama: 'Sun Y, Scarabelli L, Kotov N, et al. Field-assisted self-assembly process:
    General discussion. <i>Faraday Discussions</i>. 2015;181:463-479. doi:<a href="https://doi.org/10.1039/c5fd90041g">10.1039/c5fd90041g</a>'
  apa: 'Sun, Y., Scarabelli, L., Kotov, N., Tebbe, M., Lin, X.-M., Brullot, W., …
    Ghosh, S. (2015). Field-assisted self-assembly process: General discussion. <i>Faraday
    Discussions</i>. Royal Society of Chemistry. <a href="https://doi.org/10.1039/c5fd90041g">https://doi.org/10.1039/c5fd90041g</a>'
  chicago: 'Sun, Yugang, Leonardo Scarabelli, Nicholas Kotov, Moritz Tebbe, Xiao-Min
    Lin, Ward Brullot, Lucio Isa, et al. “Field-Assisted Self-Assembly Process: General
    Discussion.” <i>Faraday Discussions</i>. Royal Society of Chemistry, 2015. <a
    href="https://doi.org/10.1039/c5fd90041g">https://doi.org/10.1039/c5fd90041g</a>.'
  ieee: 'Y. Sun <i>et al.</i>, “Field-assisted self-assembly process: General discussion,”
    <i>Faraday Discussions</i>, vol. 181. Royal Society of Chemistry, pp. 463–479,
    2015.'
  ista: 'Sun Y, Scarabelli L, Kotov N, Tebbe M, Lin X-M, Brullot W, Isa L, Schurtenberger
    P, Moehwald H, Fedin I, Velev O, Faivre D, Sorensen C, Perzynski R, Chanana M,
    Li Z, Bresme F, Král P, Firlar E, Schiffrin D, Souza Junior JB, Fery A, Shevchenko
    E, Tarhan O, Alivisatos AP, Disch S, Klajn R, Ghosh S. 2015. Field-assisted self-assembly
    process: General discussion. Faraday Discussions. 181, 463–479.'
  mla: 'Sun, Yugang, et al. “Field-Assisted Self-Assembly Process: General Discussion.”
    <i>Faraday Discussions</i>, vol. 181, Royal Society of Chemistry, 2015, pp. 463–79,
    doi:<a href="https://doi.org/10.1039/c5fd90041g">10.1039/c5fd90041g</a>.'
  short: Y. Sun, L. Scarabelli, N. Kotov, M. Tebbe, X.-M. Lin, W. Brullot, L. Isa,
    P. Schurtenberger, H. Moehwald, I. Fedin, O. Velev, D. Faivre, C. Sorensen, R.
    Perzynski, M. Chanana, Z. Li, F. Bresme, P. Král, E. Firlar, D. Schiffrin, J.B.
    Souza Junior, A. Fery, E. Shevchenko, O. Tarhan, A.P. Alivisatos, S. Disch, R.
    Klajn, S. Ghosh, Faraday Discussions 181 (2015) 463–479.
date_created: 2023-08-01T09:45:29Z
date_published: 2015-07-07T00:00:00Z
date_updated: 2023-08-08T07:16:20Z
day: '07'
doi: 10.1039/c5fd90041g
extern: '1'
external_id:
  pmid:
  - '26149295'
intvolume: '       181'
keyword:
- Physical and Theoretical Chemistry
language:
- iso: eng
month: '07'
oa_version: None
page: 463-479
pmid: 1
publication: Faraday Discussions
publication_identifier:
  eissn:
  - 1364-5498
  issn:
  - 1359-6640
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Field-assisted self-assembly process: General discussion'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 181
year: '2015'
...
---
_id: '14018'
abstract:
- lang: eng
  text: The sensitivities of high-harmonic generation (HHG) and strong-field ionization
    (SFI) to coupled electronic and nuclear dynamics are studied, using the nitric
    oxide (NO) molecule as an example. A coherent superposition of electronic and
    rotational states of NO is prepared by impulsive stimulated Raman scattering and
    probed by simultaneous detection of HHG and SFI yields. We observe a fourfold
    higher sensitivity of high-harmonic generation to electronic dynamics and attribute
    it to the presence of inelastic quantum paths connecting coherently related electronic
    states [Kraus et al., Phys. Rev. Lett.111, 243005 (2013)]. Whereas different harmonic
    orders display very different sensitivities to rotational or electronic dynamics,
    strong-field ionization is found to be most sensitive to electronic motion. We
    introduce a general theoretical formalism for high-harmonic generation from coupled
    nuclear-electronic wave packets. We show that the unequal sensitivities of different
    harmonic orders to electronic or rotational dynamics result from the angle dependence
    of the photorecombination matrix elements which encode several autoionizing and
    shape resonances in the photoionization continuum of NO. We further study the
    dependence of rotational and electronic coherences on the intensity of the excitation
    pulse and support the observations with calculations.
article_processing_charge: No
article_type: original
author:
- first_name: Denitsa Rangelova
  full_name: Baykusheva, Denitsa Rangelova
  id: 71b4d059-2a03-11ee-914d-dfa3beed6530
  last_name: Baykusheva
- first_name: Peter M.
  full_name: Kraus, Peter M.
  last_name: Kraus
- first_name: Song Bin
  full_name: Zhang, Song Bin
  last_name: Zhang
- first_name: Nina
  full_name: Rohringer, Nina
  last_name: Rohringer
- first_name: Hans Jakob
  full_name: Wörner, Hans Jakob
  last_name: Wörner
citation:
  ama: Baykusheva DR, Kraus PM, Zhang SB, Rohringer N, Wörner HJ. The sensitivities
    of high-harmonic generation and strong-field ionization to coupled electronic
    and nuclear dynamics. <i>Faraday Discussions</i>. 2014;171:113-132. doi:<a href="https://doi.org/10.1039/c4fd00018h">10.1039/c4fd00018h</a>
  apa: Baykusheva, D. R., Kraus, P. M., Zhang, S. B., Rohringer, N., &#38; Wörner,
    H. J. (2014). The sensitivities of high-harmonic generation and strong-field ionization
    to coupled electronic and nuclear dynamics. <i>Faraday Discussions</i>. Royal
    Society of Chemistry. <a href="https://doi.org/10.1039/c4fd00018h">https://doi.org/10.1039/c4fd00018h</a>
  chicago: Baykusheva, Denitsa Rangelova, Peter M. Kraus, Song Bin Zhang, Nina Rohringer,
    and Hans Jakob Wörner. “The Sensitivities of High-Harmonic Generation and Strong-Field
    Ionization to Coupled Electronic and Nuclear Dynamics.” <i>Faraday Discussions</i>.
    Royal Society of Chemistry, 2014. <a href="https://doi.org/10.1039/c4fd00018h">https://doi.org/10.1039/c4fd00018h</a>.
  ieee: D. R. Baykusheva, P. M. Kraus, S. B. Zhang, N. Rohringer, and H. J. Wörner,
    “The sensitivities of high-harmonic generation and strong-field ionization to
    coupled electronic and nuclear dynamics,” <i>Faraday Discussions</i>, vol. 171.
    Royal Society of Chemistry, pp. 113–132, 2014.
  ista: Baykusheva DR, Kraus PM, Zhang SB, Rohringer N, Wörner HJ. 2014. The sensitivities
    of high-harmonic generation and strong-field ionization to coupled electronic
    and nuclear dynamics. Faraday Discussions. 171, 113–132.
  mla: Baykusheva, Denitsa Rangelova, et al. “The Sensitivities of High-Harmonic Generation
    and Strong-Field Ionization to Coupled Electronic and Nuclear Dynamics.” <i>Faraday
    Discussions</i>, vol. 171, Royal Society of Chemistry, 2014, pp. 113–32, doi:<a
    href="https://doi.org/10.1039/c4fd00018h">10.1039/c4fd00018h</a>.
  short: D.R. Baykusheva, P.M. Kraus, S.B. Zhang, N. Rohringer, H.J. Wörner, Faraday
    Discussions 171 (2014) 113–132.
date_created: 2023-08-10T06:38:19Z
date_published: 2014-04-14T00:00:00Z
date_updated: 2023-08-22T08:58:12Z
day: '14'
doi: 10.1039/c4fd00018h
extern: '1'
external_id:
  pmid:
  - '25415558'
intvolume: '       171'
keyword:
- Physical and Theoretical Chemistry
language:
- iso: eng
month: '04'
oa_version: None
page: 113-132
pmid: 1
publication: Faraday Discussions
publication_identifier:
  eissn:
  - 1364-5498
  issn:
  - 1359-6640
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: The sensitivities of high-harmonic generation and strong-field ionization to
  coupled electronic and nuclear dynamics
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 171
year: '2014'
...
---
_id: '14019'
abstract:
- lang: eng
  text: The cyclopropene radical cation (c-C3H₄⁺) is an important but poorly characterized
    three-membered-ring hydrocarbon. We report on a measurement of the high-resolution
    photoelectron and photoionization spectra of cyclopropene and several deuterated
    isotopomers, from which we have determined the rovibrational energy level structure
    of the X⁺ (2)B2 ground electronic state of c-C3H₄⁺ at low energies for the first
    time. The synthesis of the partially deuterated isotopomers always resulted in
    mixtures of several isotopomers, differing in their number of D atoms and in the
    location of these atoms, so that the photoelectron spectra of deuterated samples
    are superpositions of the spectra of several isotopomers. The rotationally resolved
    spectra indicate a C(2v)-symmetric R0 structure for the ground electronic state
    of c-C3H₄⁺. Two vibrational modes of c-C3H₄⁺ are found to have vibrational wave
    numbers below 300 cm(-1), which is surprising for such a small cyclic hydrocarbon.
    The analysis of the isotopic shifts of the vibrational levels enabled the assignment
    of the lowest-frequency mode (fundamental wave number of ≈110 cm(-1) in c-C3H₄⁺)
    to the CH2 torsional mode (ν₈⁺, A2 symmetry) and of the second-lowest-frequency
    mode (≈210 cm(-1) in c-C3H₄⁺) to a mode combining a CH out-of-plane with a CH2
    rocking motion (ν₁₅⁺, B2 symmetry). The potential energy along the CH2 torsional
    coordinate is flat near the equilibrium structure and leads to a pronounced anharmonicity.
article_number: '064317'
article_processing_charge: No
article_type: original
author:
- first_name: K.
  full_name: Vasilatou, K.
  last_name: Vasilatou
- first_name: J. M.
  full_name: Michaud, J. M.
  last_name: Michaud
- first_name: Denitsa Rangelova
  full_name: Baykusheva, Denitsa Rangelova
  id: 71b4d059-2a03-11ee-914d-dfa3beed6530
  last_name: Baykusheva
- first_name: G.
  full_name: Grassi, G.
  last_name: Grassi
- first_name: F.
  full_name: Merkt, F.
  last_name: Merkt
citation:
  ama: 'Vasilatou K, Michaud JM, Baykusheva DR, Grassi G, Merkt F. The cyclopropene
    radical cation: Rovibrational level structure at low energies from high-resolution
    photoelectron spectra. <i>The Journal of Chemical Physics</i>. 2014;141(6). doi:<a
    href="https://doi.org/10.1063/1.4890744">10.1063/1.4890744</a>'
  apa: 'Vasilatou, K., Michaud, J. M., Baykusheva, D. R., Grassi, G., &#38; Merkt,
    F. (2014). The cyclopropene radical cation: Rovibrational level structure at low
    energies from high-resolution photoelectron spectra. <i>The Journal of Chemical
    Physics</i>. AIP Publishing. <a href="https://doi.org/10.1063/1.4890744">https://doi.org/10.1063/1.4890744</a>'
  chicago: 'Vasilatou, K., J. M. Michaud, Denitsa Rangelova Baykusheva, G. Grassi,
    and F. Merkt. “The Cyclopropene Radical Cation: Rovibrational Level Structure
    at Low Energies from High-Resolution Photoelectron Spectra.” <i>The Journal of
    Chemical Physics</i>. AIP Publishing, 2014. <a href="https://doi.org/10.1063/1.4890744">https://doi.org/10.1063/1.4890744</a>.'
  ieee: 'K. Vasilatou, J. M. Michaud, D. R. Baykusheva, G. Grassi, and F. Merkt, “The
    cyclopropene radical cation: Rovibrational level structure at low energies from
    high-resolution photoelectron spectra,” <i>The Journal of Chemical Physics</i>,
    vol. 141, no. 6. AIP Publishing, 2014.'
  ista: 'Vasilatou K, Michaud JM, Baykusheva DR, Grassi G, Merkt F. 2014. The cyclopropene
    radical cation: Rovibrational level structure at low energies from high-resolution
    photoelectron spectra. The Journal of Chemical Physics. 141(6), 064317.'
  mla: 'Vasilatou, K., et al. “The Cyclopropene Radical Cation: Rovibrational Level
    Structure at Low Energies from High-Resolution Photoelectron Spectra.” <i>The
    Journal of Chemical Physics</i>, vol. 141, no. 6, 064317, AIP Publishing, 2014,
    doi:<a href="https://doi.org/10.1063/1.4890744">10.1063/1.4890744</a>.'
  short: K. Vasilatou, J.M. Michaud, D.R. Baykusheva, G. Grassi, F. Merkt, The Journal
    of Chemical Physics 141 (2014).
date_created: 2023-08-10T06:38:30Z
date_published: 2014-08-14T00:00:00Z
date_updated: 2023-08-22T09:01:31Z
day: '14'
doi: 10.1063/1.4890744
extern: '1'
external_id:
  pmid:
  - '25134581'
intvolume: '       141'
issue: '6'
keyword:
- Physical and Theoretical Chemistry
- General Physics and Astronomy
language:
- iso: eng
month: '08'
oa_version: None
pmid: 1
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The cyclopropene radical cation: Rovibrational level structure at low energies
  from high-resolution photoelectron spectra'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 141
year: '2014'
...
---
_id: '8470'
abstract:
- lang: eng
  text: 'Adding a new dimension: 4D or 3D proton‐detected spectra of perdeuterated
    protein samples with 1H labelled amides and methyl groups permit collecting unambiguous
    distance restraints with high sensitivity and determining protein structure by
    solid‐state NMR (see picture).'
article_processing_charge: No
article_type: original
author:
- first_name: Matthias
  full_name: Huber, Matthias
  last_name: Huber
- first_name: Sebastian
  full_name: Hiller, Sebastian
  last_name: Hiller
- first_name: Paul
  full_name: Schanda, Paul
  id: 7B541462-FAF6-11E9-A490-E8DFE5697425
  last_name: Schanda
  orcid: 0000-0002-9350-7606
- first_name: Matthias
  full_name: Ernst, Matthias
  last_name: Ernst
- first_name: Anja
  full_name: Böckmann, Anja
  last_name: Böckmann
- first_name: René
  full_name: Verel, René
  last_name: Verel
- first_name: Beat H.
  full_name: Meier, Beat H.
  last_name: Meier
citation:
  ama: Huber M, Hiller S, Schanda P, et al. A proton-detected 4D solid-state NMR experiment
    for protein structure determination. <i>ChemPhysChem</i>. 2011;12(5):915-918.
    doi:<a href="https://doi.org/10.1002/cphc.201100062">10.1002/cphc.201100062</a>
  apa: Huber, M., Hiller, S., Schanda, P., Ernst, M., Böckmann, A., Verel, R., &#38;
    Meier, B. H. (2011). A proton-detected 4D solid-state NMR experiment for protein
    structure determination. <i>ChemPhysChem</i>. Wiley. <a href="https://doi.org/10.1002/cphc.201100062">https://doi.org/10.1002/cphc.201100062</a>
  chicago: Huber, Matthias, Sebastian Hiller, Paul Schanda, Matthias Ernst, Anja Böckmann,
    René Verel, and Beat H. Meier. “A Proton-Detected 4D Solid-State NMR Experiment
    for Protein Structure Determination.” <i>ChemPhysChem</i>. Wiley, 2011. <a href="https://doi.org/10.1002/cphc.201100062">https://doi.org/10.1002/cphc.201100062</a>.
  ieee: M. Huber <i>et al.</i>, “A proton-detected 4D solid-state NMR experiment for
    protein structure determination,” <i>ChemPhysChem</i>, vol. 12, no. 5. Wiley,
    pp. 915–918, 2011.
  ista: Huber M, Hiller S, Schanda P, Ernst M, Böckmann A, Verel R, Meier BH. 2011.
    A proton-detected 4D solid-state NMR experiment for protein structure determination.
    ChemPhysChem. 12(5), 915–918.
  mla: Huber, Matthias, et al. “A Proton-Detected 4D Solid-State NMR Experiment for
    Protein Structure Determination.” <i>ChemPhysChem</i>, vol. 12, no. 5, Wiley,
    2011, pp. 915–18, doi:<a href="https://doi.org/10.1002/cphc.201100062">10.1002/cphc.201100062</a>.
  short: M. Huber, S. Hiller, P. Schanda, M. Ernst, A. Böckmann, R. Verel, B.H. Meier,
    ChemPhysChem 12 (2011) 915–918.
date_created: 2020-09-18T10:10:56Z
date_published: 2011-02-15T00:00:00Z
date_updated: 2021-01-12T08:19:30Z
day: '15'
doi: 10.1002/cphc.201100062
extern: '1'
intvolume: '        12'
issue: '5'
keyword:
- Physical and Theoretical Chemistry
- Atomic and Molecular Physics
- and Optics
language:
- iso: eng
month: '02'
oa_version: None
page: 915-918
publication: ChemPhysChem
publication_identifier:
  issn:
  - 1439-4235
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: A proton-detected 4D solid-state NMR experiment for protein structure determination
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2011'
...
---
_id: '10128'
abstract:
- lang: eng
  text: 'An extensive computational study of the conformational preferences of three
    capped dipeptides: Ac-Xxx-Phe-NH2, Xxx = Gly, Ala, Val is reported. On the basis
    of local second-order Møller–Plesset perturbation theory (LMP2) and DFT computations
    we were able to identify the experimentally observed conformers as γL–γL(g−) and
    β-turn I(g+) in Ac-Gly-Phe-NH2, and Ac-Ala-Phe-NH2, and as the closely related
    γL(g+)–γL(g−) and β-turn I(a,g+) in Ac-Val-Phe-NH2. In contrast to the experimental
    observation that peptides with bulky side chain have a propensity for β-turns,
    we show that in Ac-Val-Phe-NH2 the minimum energy structure corresponds to the
    experimentally non detected β-strand.'
acknowledgement: This work has been supported by the MZOŠ projects 098-0352851-2921
  and 119-1191342-2959.
article_processing_charge: No
article_type: original
author:
- first_name: Anđela
  full_name: Šarić, Anđela
  id: bf63d406-f056-11eb-b41d-f263a6566d8b
  last_name: Šarić
  orcid: 0000-0002-7854-2139
- first_name: T.
  full_name: Hrenar, T.
  last_name: Hrenar
- first_name: M.
  full_name: Mališ, M.
  last_name: Mališ
- first_name: N.
  full_name: Došlić, N.
  last_name: Došlić
citation:
  ama: Šarić A, Hrenar T, Mališ M, Došlić N. Quantum mechanical study of secondary
    structure formation in protected dipeptides. <i>Physical Chemistry Chemical Physics</i>.
    2010;12(18):4678-4685. doi:<a href="https://doi.org/10.1039/b923041f">10.1039/b923041f</a>
  apa: Šarić, A., Hrenar, T., Mališ, M., &#38; Došlić, N. (2010). Quantum mechanical
    study of secondary structure formation in protected dipeptides. <i>Physical Chemistry
    Chemical Physics</i>. Royal Society of Chemistry . <a href="https://doi.org/10.1039/b923041f">https://doi.org/10.1039/b923041f</a>
  chicago: Šarić, Anđela, T. Hrenar, M. Mališ, and N. Došlić. “Quantum Mechanical
    Study of Secondary Structure Formation in Protected Dipeptides.” <i>Physical Chemistry
    Chemical Physics</i>. Royal Society of Chemistry , 2010. <a href="https://doi.org/10.1039/b923041f">https://doi.org/10.1039/b923041f</a>.
  ieee: A. Šarić, T. Hrenar, M. Mališ, and N. Došlić, “Quantum mechanical study of
    secondary structure formation in protected dipeptides,” <i>Physical Chemistry
    Chemical Physics</i>, vol. 12, no. 18. Royal Society of Chemistry , pp. 4678–4685,
    2010.
  ista: Šarić A, Hrenar T, Mališ M, Došlić N. 2010. Quantum mechanical study of secondary
    structure formation in protected dipeptides. Physical Chemistry Chemical Physics.
    12(18), 4678–4685.
  mla: Šarić, Anđela, et al. “Quantum Mechanical Study of Secondary Structure Formation
    in Protected Dipeptides.” <i>Physical Chemistry Chemical Physics</i>, vol. 12,
    no. 18, Royal Society of Chemistry , 2010, pp. 4678–85, doi:<a href="https://doi.org/10.1039/b923041f">10.1039/b923041f</a>.
  short: A. Šarić, T. Hrenar, M. Mališ, N. Došlić, Physical Chemistry Chemical Physics
    12 (2010) 4678–4685.
date_created: 2021-10-12T08:44:34Z
date_published: 2010-03-16T00:00:00Z
date_updated: 2021-10-12T09:49:22Z
day: '16'
doi: 10.1039/b923041f
extern: '1'
external_id:
  pmid:
  - '20428547'
intvolume: '        12'
issue: '18'
keyword:
- Physical and Theoretical Chemistry
- General Physics and Astronomy
language:
- iso: eng
main_file_link:
- url: https://europepmc.org/article/med/20428547
month: '03'
oa_version: None
page: 4678-4685
pmid: 1
publication: Physical Chemistry Chemical Physics
publication_identifier:
  issn:
  - 1463-9076
  - 1463-9084
publication_status: published
publisher: 'Royal Society of Chemistry '
quality_controlled: '1'
status: public
title: Quantum mechanical study of secondary structure formation in protected dipeptides
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 12
year: '2010'
...
---
_id: '10392'
abstract:
- lang: eng
  text: Protonated formylmetallocenes [M(C5H5)(C5H4-CHOH)]+ (M = Fe, Ru) and their
    isomers have been studied at the BP86 and B3LYP levels of density functional theory.
    Oxygen-protonated isomers are the most stable forms in each case, with a plethora
    of ring- or metal-protonated species at least ca. 14 and 10 kcal/mol higher in
    energy for M = Fe and Ru, respectively. The computed rotational barriers around
    the C−C bond connecting the cyclopentadienyl and protonated formyl moieties, ca.
    18 kcal/mol, are indicative of substantial conjugation between these moieties.
    Some of the ring- and iron-protonated species are models for possible intermediates
    in Friedel–Crafts acylation of ferrocene, and the computations provide further
    evidence that exo attack is clearly favored over endo attack of the electrophile
    in this reaction. The structures of the most stable mono- and diprotonated formylferrocenes
    are corroborated by the good agreement between GIAO-B3LYP-computed and experimental
    NMR chemical shifts.
acknowledgement: M.B. wishes to thank Prof. W. Thiel and the Max-Planck-Institut für
  Kohlenforschung for continuing support. A Humboldt fellowship for V.V. is gratefully
  acknowledged. Computations were performed on Compaq XP1000 and ES40 workstations
  as well as on an Intel Xeon PC cluster at the MPI Mülheim. A.S. thanks the Computing
  Center of the University of Zagreb SRCE for allocating computer time on the Isabella
  cluster.
article_processing_charge: No
article_type: original
author:
- first_name: Anđela
  full_name: Šarić, Anđela
  id: bf63d406-f056-11eb-b41d-f263a6566d8b
  last_name: Šarić
  orcid: 0000-0002-7854-2139
- first_name: Valerije
  full_name: Vrček, Valerije
  last_name: Vrček
- first_name: Michael
  full_name: Bühl, Michael
  last_name: Bühl
citation:
  ama: Šarić A, Vrček V, Bühl M. Density functional study of protonated formylmetallocenes.
    <i>Organometallics</i>. 2008;27(3):394-401. doi:<a href="https://doi.org/10.1021/om700916f">10.1021/om700916f</a>
  apa: Šarić, A., Vrček, V., &#38; Bühl, M. (2008). Density functional study of protonated
    formylmetallocenes. <i>Organometallics</i>. American Chemical Society. <a href="https://doi.org/10.1021/om700916f">https://doi.org/10.1021/om700916f</a>
  chicago: Šarić, Anđela, Valerije Vrček, and Michael Bühl. “Density Functional Study
    of Protonated Formylmetallocenes.” <i>Organometallics</i>. American Chemical Society,
    2008. <a href="https://doi.org/10.1021/om700916f">https://doi.org/10.1021/om700916f</a>.
  ieee: A. Šarić, V. Vrček, and M. Bühl, “Density functional study of protonated formylmetallocenes,”
    <i>Organometallics</i>, vol. 27, no. 3. American Chemical Society, pp. 394–401,
    2008.
  ista: Šarić A, Vrček V, Bühl M. 2008. Density functional study of protonated formylmetallocenes.
    Organometallics. 27(3), 394–401.
  mla: Šarić, Anđela, et al. “Density Functional Study of Protonated Formylmetallocenes.”
    <i>Organometallics</i>, vol. 27, no. 3, American Chemical Society, 2008, pp. 394–401,
    doi:<a href="https://doi.org/10.1021/om700916f">10.1021/om700916f</a>.
  short: A. Šarić, V. Vrček, M. Bühl, Organometallics 27 (2008) 394–401.
date_created: 2021-11-29T15:31:06Z
date_published: 2008-01-15T00:00:00Z
date_updated: 2021-11-30T08:04:44Z
day: '15'
doi: 10.1021/om700916f
extern: '1'
intvolume: '        27'
issue: '3'
keyword:
- Inorganic Chemistry
- Organic Chemistry
- Physical and Theoretical Chemistry
language:
- iso: eng
main_file_link:
- url: https://pubs.acs.org/doi/10.1021/om700916f
month: '01'
oa_version: None
page: 394-401
publication: Organometallics
publication_identifier:
  eissn:
  - 1520-6041
  issn:
  - 0276-7333
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Density functional study of protonated formylmetallocenes
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 27
year: '2008'
...
---
_id: '13430'
abstract:
- lang: eng
  text: Dynamic self-assembly (DySA) processes occurring outside of thermodynamic
    equilibrium underlie many forms of adaptive and intellligent behaviors in natural
    systems. Relatively little, however, is known about the principles that govern
    DySA and the ways in which it can be extended to artificial ensembles. This article
    discusses recent advances in both the theory and the practice of nonequilibrium
    self-assembly. It is argued that a union of ideas from thermodynamics and dynamic
    systems' theory can provide a general description of DySA. In parallel, heuristic
    design rules can be used to construct DySA systems of increasing complexities
    based on a variety of suitable interactions/potentials on length scales from nanoscopic
    to macroscopic. Applications of these rules to magnetohydrodynamic DySA are also
    discussed.
article_processing_charge: No
article_type: original
author:
- first_name: Marcin
  full_name: Fialkowski, Marcin
  last_name: Fialkowski
- first_name: Kyle J. M.
  full_name: Bishop, Kyle J. M.
  last_name: Bishop
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Stoyan K.
  full_name: Smoukov, Stoyan K.
  last_name: Smoukov
- first_name: Christopher J.
  full_name: Campbell, Christopher J.
  last_name: Campbell
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: Fialkowski M, Bishop KJM, Klajn R, Smoukov SK, Campbell CJ, Grzybowski BA.
    Principles and implementations of dissipative (dynamic) self-assembly. <i>The
    Journal of Physical Chemistry B</i>. 2006;110(6):2482-2496. doi:<a href="https://doi.org/10.1021/jp054153q">10.1021/jp054153q</a>
  apa: Fialkowski, M., Bishop, K. J. M., Klajn, R., Smoukov, S. K., Campbell, C. J.,
    &#38; Grzybowski, B. A. (2006). Principles and implementations of dissipative
    (dynamic) self-assembly. <i>The Journal of Physical Chemistry B</i>. American
    Chemical Society. <a href="https://doi.org/10.1021/jp054153q">https://doi.org/10.1021/jp054153q</a>
  chicago: Fialkowski, Marcin, Kyle J. M. Bishop, Rafal Klajn, Stoyan K. Smoukov,
    Christopher J. Campbell, and Bartosz A. Grzybowski. “Principles and Implementations
    of Dissipative (Dynamic) Self-Assembly.” <i>The Journal of Physical Chemistry
    B</i>. American Chemical Society, 2006. <a href="https://doi.org/10.1021/jp054153q">https://doi.org/10.1021/jp054153q</a>.
  ieee: M. Fialkowski, K. J. M. Bishop, R. Klajn, S. K. Smoukov, C. J. Campbell, and
    B. A. Grzybowski, “Principles and implementations of dissipative (dynamic) self-assembly,”
    <i>The Journal of Physical Chemistry B</i>, vol. 110, no. 6. American Chemical
    Society, pp. 2482–2496, 2006.
  ista: Fialkowski M, Bishop KJM, Klajn R, Smoukov SK, Campbell CJ, Grzybowski BA.
    2006. Principles and implementations of dissipative (dynamic) self-assembly. The
    Journal of Physical Chemistry B. 110(6), 2482–2496.
  mla: Fialkowski, Marcin, et al. “Principles and Implementations of Dissipative (Dynamic)
    Self-Assembly.” <i>The Journal of Physical Chemistry B</i>, vol. 110, no. 6, American
    Chemical Society, 2006, pp. 2482–96, doi:<a href="https://doi.org/10.1021/jp054153q">10.1021/jp054153q</a>.
  short: M. Fialkowski, K.J.M. Bishop, R. Klajn, S.K. Smoukov, C.J. Campbell, B.A.
    Grzybowski, The Journal of Physical Chemistry B 110 (2006) 2482–2496.
date_created: 2023-08-01T10:37:35Z
date_published: 2006-01-25T00:00:00Z
date_updated: 2023-08-08T11:33:08Z
day: '25'
doi: 10.1021/jp054153q
extern: '1'
external_id:
  pmid:
  - '16471845'
intvolume: '       110'
issue: '6'
keyword:
- Materials Chemistry
- Surfaces
- Coatings and Films
- Physical and Theoretical Chemistry
language:
- iso: eng
month: '01'
oa_version: None
page: 2482-2496
pmid: 1
publication: The Journal of Physical Chemistry B
publication_identifier:
  issn:
  - 1520-6106
  - 1520-5207
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Principles and implementations of dissipative (dynamic) self-assembly
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 110
year: '2006'
...
