---
_id: '14610'
abstract:
- lang: eng
  text: <jats:title>Abstract</jats:title><jats:p>Endomembrane damage represents a
    form of stress that is detrimental for eukaryotic cells<jats:sup>1,2</jats:sup>.
    To cope with this threat, cells possess mechanisms that repair the damage and
    restore cellular homeostasis<jats:sup>3–7</jats:sup>. Endomembrane damage also
    results in organelle instability and the mechanisms by which cells stabilize damaged
    endomembranes to enable membrane repair remains unknown. Here, by combining in
    vitro and in cellulo studies with computational modelling we uncover a biological
    function for stress granules whereby these biomolecular condensates form rapidly
    at endomembrane damage sites and act as a plug that stabilizes the ruptured membrane.
    Functionally, we demonstrate that stress granule formation and membrane stabilization
    enable efficient repair of damaged endolysosomes, through both ESCRT (endosomal
    sorting complex required for transport)-dependent and independent mechanisms.
    We also show that blocking stress granule formation in human macrophages creates
    a permissive environment for <jats:italic>Mycobacterium tuberculosis</jats:italic>,
    a human pathogen that exploits endomembrane damage to survive within the host.</jats:p>
acknowledgement: "We thank the Human Embryonic Stem Cell Unit, Advanced Light Microscopy
  and High-throughput Screening facilities at the Crick for their support in various
  aspects of the work. We thank the laboratory of P. Anderson for providing the G3BP-DKO
  U2OS cells. The authors thank N. Chen for providing the purified glycinin protein;
  Z. Zhao for providing the microfluidic chip wafers; and M. Amaral and F. Frey for
  helpful discussions and valuable input regarding analysis methods. This work was
  supported by the Francis Crick Institute (to M.G.G.), which receives its core funding
  from Cancer Research UK (FC001092), the UK Medical Research Council (FC001092) and
  the Wellcome Trust (FC001092). This project has received funding from the European
  Research Council (ERC) under the European Union’s Horizon 2020 research and innovation
  programme (grant agreement no. 772022 to M.G.G.). C.B. has received funding from
  the European Respiratory Society and the European Union’s H2020 research and innovation
  programme under the Marie Sklodowska-Curie grant agreement no. 713406. A.M. acknowledges
  support from Alexander von Humboldt Foundation and C.V.-C. acknowledges funding
  by the Royal Society and the European Research Council under the European Union’s
  Horizon 2020 Research and Innovation Programme (grant no. 802960 to A.S.). All simulations
  were carried out on the high-performance computing cluster at the Institute of Science
  and Technology Austria. For the purpose of Open Access, the author has applied a
  CC BY public copyright licence to any Author Accepted Manuscript version arising
  from this submission.\r\nOpen Access funding provided by The Francis Crick Institute."
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Claudio
  full_name: Bussi, Claudio
  last_name: Bussi
- first_name: Agustín
  full_name: Mangiarotti, Agustín
  last_name: Mangiarotti
- first_name: Christian Eduardo
  full_name: Vanhille-Campos, Christian Eduardo
  id: 3adeca52-9313-11ed-b1ac-c170b2505714
  last_name: Vanhille-Campos
- first_name: Beren
  full_name: Aylan, Beren
  last_name: Aylan
- first_name: Enrica
  full_name: Pellegrino, Enrica
  last_name: Pellegrino
- first_name: Natalia
  full_name: Athanasiadi, Natalia
  last_name: Athanasiadi
- first_name: Antony
  full_name: Fearns, Antony
  last_name: Fearns
- first_name: Angela
  full_name: Rodgers, Angela
  last_name: Rodgers
- first_name: Titus M.
  full_name: Franzmann, Titus M.
  last_name: Franzmann
- first_name: Anđela
  full_name: Šarić, Anđela
  id: bf63d406-f056-11eb-b41d-f263a6566d8b
  last_name: Šarić
  orcid: 0000-0002-7854-2139
- first_name: Rumiana
  full_name: Dimova, Rumiana
  last_name: Dimova
- first_name: Maximiliano G.
  full_name: Gutierrez, Maximiliano G.
  last_name: Gutierrez
citation:
  ama: Bussi C, Mangiarotti A, Vanhille-Campos CE, et al. Stress granules plug and
    stabilize damaged endolysosomal membranes. <i>Nature</i>. 2023. doi:<a href="https://doi.org/10.1038/s41586-023-06726-w">10.1038/s41586-023-06726-w</a>
  apa: Bussi, C., Mangiarotti, A., Vanhille-Campos, C. E., Aylan, B., Pellegrino,
    E., Athanasiadi, N., … Gutierrez, M. G. (2023). Stress granules plug and stabilize
    damaged endolysosomal membranes. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-023-06726-w">https://doi.org/10.1038/s41586-023-06726-w</a>
  chicago: Bussi, Claudio, Agustín Mangiarotti, Christian Eduardo Vanhille-Campos,
    Beren Aylan, Enrica Pellegrino, Natalia Athanasiadi, Antony Fearns, et al. “Stress
    Granules Plug and Stabilize Damaged Endolysosomal Membranes.” <i>Nature</i>. Springer
    Nature, 2023. <a href="https://doi.org/10.1038/s41586-023-06726-w">https://doi.org/10.1038/s41586-023-06726-w</a>.
  ieee: C. Bussi <i>et al.</i>, “Stress granules plug and stabilize damaged endolysosomal
    membranes,” <i>Nature</i>. Springer Nature, 2023.
  ista: Bussi C, Mangiarotti A, Vanhille-Campos CE, Aylan B, Pellegrino E, Athanasiadi
    N, Fearns A, Rodgers A, Franzmann TM, Šarić A, Dimova R, Gutierrez MG. 2023. Stress
    granules plug and stabilize damaged endolysosomal membranes. Nature.
  mla: Bussi, Claudio, et al. “Stress Granules Plug and Stabilize Damaged Endolysosomal
    Membranes.” <i>Nature</i>, Springer Nature, 2023, doi:<a href="https://doi.org/10.1038/s41586-023-06726-w">10.1038/s41586-023-06726-w</a>.
  short: C. Bussi, A. Mangiarotti, C.E. Vanhille-Campos, B. Aylan, E. Pellegrino,
    N. Athanasiadi, A. Fearns, A. Rodgers, T.M. Franzmann, A. Šarić, R. Dimova, M.G.
    Gutierrez, Nature (2023).
date_created: 2023-11-27T07:56:37Z
date_published: 2023-11-15T00:00:00Z
date_updated: 2023-11-27T09:05:08Z
day: '15'
department:
- _id: AnSa
doi: 10.1038/s41586-023-06726-w
external_id:
  pmid:
  - '37968398'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/s41586-023-06726-w
month: '11'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: epub_ahead
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1038/s41586-023-06882-z
  record:
  - id: '14472'
    relation: research_data
    status: public
status: public
title: Stress granules plug and stabilize damaged endolysosomal membranes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '14784'
abstract:
- lang: eng
  text: The next steps of deep space exploration are manned missions to Moon and Mars.
    For safe space missions for crew members, it is important to understand the impact
    of space flight on the immune system. We studied the effects of 21 days dry immersion
    (DI) exposure on the transcriptomes of T cells isolated from blood samples of
    eight healthy volunteers. Samples were collected 7 days before DI, at day 7, 14,
    and 21 during DI, and 7 days after DI. RNA sequencing of CD3+T cells revealed
    transcriptional alterations across all time points, with most changes occurring
    14 days after DI exposure. At day 21, T cells showed evidence of adaptation with
    a transcriptional profile resembling that of 7 days before DI. At 7 days after
    DI, T cells again changed their transcriptional profile. These data suggest that
    T cells adapt by rewiring their transcriptomes in response to simulated weightlessness
    and that remodeling cues persist when reexposed to normal gravity.
acknowledgement: This work was supported by a postdoctoral fellowship from the Swedish
  Society for Medical Research to J.R., a CAPES-STINT joint grant to R.G.G. and L.S.W.,
  a PhD fellowship from Karolinska Institutet (KID) to E.D., a PhD fellowship from
  Fundação para a Ciência e a Tecnologia and European Social Fund to M.M.S.O., the
  program of fundamental research (theme 65.1) of the Institute for Biomedical Problems
  of the Russian Academy of Sciences (IBMP RAS) to A.A.S., S.M.S., V.A.S., O.V.K.,
  D.D.V., K.D.O., M.P.R., and S.A.P., the Tamkeen under the NYU Abu Dhabi Research
  Institute Award to the NYUAD Center for Genomics and Systems Biology (ADHPG-CGSB)
  to P.P., the Knut and Alice Wallenberg foundation to C.K., the Swedish National
  Space Agency to N.V.K. and L.S.W., Swedish Research Council, Gösta Fraenckel Foundation,
  and Karolinska Institutet to L.S.W.
article_number: adg1610
article_processing_charge: Yes
article_type: original
author:
- first_name: Carlos J.
  full_name: Gallardo-Dodd, Carlos J.
  last_name: Gallardo-Dodd
- first_name: Christian
  full_name: Oertlin, Christian
  last_name: Oertlin
- first_name: Julien
  full_name: Record, Julien
  last_name: Record
- first_name: Rômulo G.
  full_name: Galvani, Rômulo G.
  last_name: Galvani
- first_name: Christian
  full_name: Sommerauer, Christian
  last_name: Sommerauer
- first_name: Nikolai V.
  full_name: Kuznetsov, Nikolai V.
  last_name: Kuznetsov
- first_name: Evangelos
  full_name: Doukoumopoulos, Evangelos
  last_name: Doukoumopoulos
- first_name: Liaqat
  full_name: Ali, Liaqat
  last_name: Ali
- first_name: Mariana M. S.
  full_name: Oliveira, Mariana M. S.
  last_name: Oliveira
- first_name: Christina
  full_name: Seitz, Christina
  last_name: Seitz
- first_name: Mathias
  full_name: Percipalle, Mathias
  id: 45adb726-eb97-11eb-a6c2-c7c3d3caabe9
  last_name: Percipalle
- first_name: Tijana
  full_name: Nikić, Tijana
  last_name: Nikić
- first_name: Anastasia A.
  full_name: Sadova, Anastasia A.
  last_name: Sadova
- first_name: Sofia M.
  full_name: Shulgina, Sofia M.
  last_name: Shulgina
- first_name: Vjacheslav A.
  full_name: Shmarov, Vjacheslav A.
  last_name: Shmarov
- first_name: Olga V.
  full_name: Kutko, Olga V.
  last_name: Kutko
- first_name: Daria D.
  full_name: Vlasova, Daria D.
  last_name: Vlasova
- first_name: Kseniya D.
  full_name: Orlova, Kseniya D.
  last_name: Orlova
- first_name: Marina P.
  full_name: Rykova, Marina P.
  last_name: Rykova
- first_name: John
  full_name: Andersson, John
  last_name: Andersson
- first_name: Piergiorgio
  full_name: Percipalle, Piergiorgio
  last_name: Percipalle
- first_name: Claudia
  full_name: Kutter, Claudia
  last_name: Kutter
- first_name: Sergey A.
  full_name: Ponomarev, Sergey A.
  last_name: Ponomarev
- first_name: Lisa S.
  full_name: Westerberg, Lisa S.
  last_name: Westerberg
citation:
  ama: Gallardo-Dodd CJ, Oertlin C, Record J, et al. Exposure of volunteers to microgravity
    by dry immersion bed over 21 days results in gene expression changes and adaptation
    of T cells. <i>Science Advances</i>. 2023;9(34). doi:<a href="https://doi.org/10.1126/sciadv.adg1610">10.1126/sciadv.adg1610</a>
  apa: Gallardo-Dodd, C. J., Oertlin, C., Record, J., Galvani, R. G., Sommerauer,
    C., Kuznetsov, N. V., … Westerberg, L. S. (2023). Exposure of volunteers to microgravity
    by dry immersion bed over 21 days results in gene expression changes and adaptation
    of T cells. <i>Science Advances</i>. American Association for the Advancement
    of Science. <a href="https://doi.org/10.1126/sciadv.adg1610">https://doi.org/10.1126/sciadv.adg1610</a>
  chicago: Gallardo-Dodd, Carlos J., Christian Oertlin, Julien Record, Rômulo G. Galvani,
    Christian Sommerauer, Nikolai V. Kuznetsov, Evangelos Doukoumopoulos, et al. “Exposure
    of Volunteers to Microgravity by Dry Immersion Bed over 21 Days Results in Gene
    Expression Changes and Adaptation of T Cells.” <i>Science Advances</i>. American
    Association for the Advancement of Science, 2023. <a href="https://doi.org/10.1126/sciadv.adg1610">https://doi.org/10.1126/sciadv.adg1610</a>.
  ieee: C. J. Gallardo-Dodd <i>et al.</i>, “Exposure of volunteers to microgravity
    by dry immersion bed over 21 days results in gene expression changes and adaptation
    of T cells,” <i>Science Advances</i>, vol. 9, no. 34. American Association for
    the Advancement of Science, 2023.
  ista: Gallardo-Dodd CJ, Oertlin C, Record J, Galvani RG, Sommerauer C, Kuznetsov
    NV, Doukoumopoulos E, Ali L, Oliveira MMS, Seitz C, Percipalle M, Nikić T, Sadova
    AA, Shulgina SM, Shmarov VA, Kutko OV, Vlasova DD, Orlova KD, Rykova MP, Andersson
    J, Percipalle P, Kutter C, Ponomarev SA, Westerberg LS. 2023. Exposure of volunteers
    to microgravity by dry immersion bed over 21 days results in gene expression changes
    and adaptation of T cells. Science Advances. 9(34), adg1610.
  mla: Gallardo-Dodd, Carlos J., et al. “Exposure of Volunteers to Microgravity by
    Dry Immersion Bed over 21 Days Results in Gene Expression Changes and Adaptation
    of T Cells.” <i>Science Advances</i>, vol. 9, no. 34, adg1610, American Association
    for the Advancement of Science, 2023, doi:<a href="https://doi.org/10.1126/sciadv.adg1610">10.1126/sciadv.adg1610</a>.
  short: C.J. Gallardo-Dodd, C. Oertlin, J. Record, R.G. Galvani, C. Sommerauer, N.V.
    Kuznetsov, E. Doukoumopoulos, L. Ali, M.M.S. Oliveira, C. Seitz, M. Percipalle,
    T. Nikić, A.A. Sadova, S.M. Shulgina, V.A. Shmarov, O.V. Kutko, D.D. Vlasova,
    K.D. Orlova, M.P. Rykova, J. Andersson, P. Percipalle, C. Kutter, S.A. Ponomarev,
    L.S. Westerberg, Science Advances 9 (2023).
date_created: 2024-01-10T09:48:01Z
date_published: 2023-08-25T00:00:00Z
date_updated: 2024-01-16T09:38:58Z
day: '25'
ddc:
- '570'
department:
- _id: FlSc
doi: 10.1126/sciadv.adg1610
external_id:
  isi:
  - '001054596800007'
  pmid:
  - '37624890'
file:
- access_level: open_access
  checksum: b9072e20e2d5d9d34d2c53319bafee41
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-16T09:35:28Z
  date_updated: 2024-01-16T09:35:28Z
  file_id: '14809'
  file_name: 2023_ScienceAdvances_GallardoDodd.pdf
  file_size: 1596639
  relation: main_file
  success: 1
file_date_updated: 2024-01-16T09:35:28Z
has_accepted_license: '1'
intvolume: '         9'
isi: 1
issue: '34'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: Science Advances
publication_identifier:
  issn:
  - 2375-2548
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
status: public
title: Exposure of volunteers to microgravity by dry immersion bed over 21 days results
  in gene expression changes and adaptation of T cells
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2023'
...
---
_id: '13106'
abstract:
- lang: eng
  text: Quantum entanglement is a key resource in currently developed quantum technologies.
    Sharing this fragile property between superconducting microwave circuits and optical
    or atomic systems would enable new functionalities, but this has been hindered
    by an energy scale mismatch of >104 and the resulting mutually imposed loss and
    noise. In this work, we created and verified entanglement between microwave and
    optical fields in a millikelvin environment. Using an optically pulsed superconducting
    electro-optical device, we show entanglement between propagating microwave and
    optical fields in the continuous variable domain. This achievement not only paves
    the way for entanglement between superconducting circuits and telecom wavelength
    light, but also has wide-ranging implications for hybrid quantum networks in the
    context of modularization, scaling, sensing, and cross-platform verification.
acknowledgement: This work was supported by the European Research Council (grant no.
  758053, ERC StG QUNNECT) and the European Union’s Horizon 2020 Research and Innovation
  Program (grant no. 899354, FETopen SuperQuLAN). L.Q. acknowledges generous support
  from the ISTFELLOW program. W.H. is the recipient of an ISTplus postdoctoral fellowship
  with funding from the European Union’s Horizon 2020 Research and Innovation Program
  (Marie Sklodowska-Curie grant no. 754411). G.A. is the recipient of a DOC fellowship
  of the Austrian Academy of Sciences at IST Austria. J.M.F. acknowledges support
  from the Austrian Science Fund (FWF) through BeyondC (grant no. F7105) and the European
  Union’s Horizon 2020 Research and Innovation Program (grant no. 862644, FETopen
  QUARTET).
article_processing_charge: No
arxiv: 1
author:
- first_name: Rishabh
  full_name: Sahu, Rishabh
  id: 47D26E34-F248-11E8-B48F-1D18A9856A87
  last_name: Sahu
  orcid: 0000-0001-6264-2162
- first_name: Liu
  full_name: Qiu, Liu
  id: 45e99c0d-1eb1-11eb-9b96-ed8ab2983cac
  last_name: Qiu
  orcid: 0000-0003-4345-4267
- first_name: William J
  full_name: Hease, William J
  id: 29705398-F248-11E8-B48F-1D18A9856A87
  last_name: Hease
  orcid: 0000-0001-9868-2166
- first_name: Georg M
  full_name: Arnold, Georg M
  id: 3770C838-F248-11E8-B48F-1D18A9856A87
  last_name: Arnold
  orcid: 0000-0003-1397-7876
- first_name: Y.
  full_name: Minoguchi, Y.
  last_name: Minoguchi
- first_name: P.
  full_name: Rabl, P.
  last_name: Rabl
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
citation:
  ama: Sahu R, Qiu L, Hease WJ, et al. Entangling microwaves with light. 2023;380:718-721.
    doi:<a href="https://doi.org/10.1126/science.adg3812">10.1126/science.adg3812</a>
  apa: Sahu, R., Qiu, L., Hease, W. J., Arnold, G. M., Minoguchi, Y., Rabl, P., &#38;
    Fink, J. M. (2023). <i>Entangling microwaves with light</i>. American Association
    for the Advancement of Science. <a href="https://doi.org/10.1126/science.adg3812">https://doi.org/10.1126/science.adg3812</a>
  chicago: Sahu, Rishabh, Liu Qiu, William J Hease, Georg M Arnold, Y. Minoguchi,
    P. Rabl, and Johannes M Fink. “Entangling Microwaves with Light.” American Association
    for the Advancement of Science, 2023. <a href="https://doi.org/10.1126/science.adg3812">https://doi.org/10.1126/science.adg3812</a>.
  ieee: R. Sahu <i>et al.</i>, “Entangling microwaves with light,” American Association
    for the Advancement of Science, 2023.
  ista: Sahu R, Qiu L, Hease WJ, Arnold GM, Minoguchi Y, Rabl P, Fink JM. 2023. Entangling
    microwaves with light. American Association for the Advancement of Science.
  mla: Sahu, Rishabh, et al. <i>Entangling Microwaves with Light</i>. Vol. 380, American
    Association for the Advancement of Science, 2023, pp. 718–21, doi:<a href="https://doi.org/10.1126/science.adg3812">10.1126/science.adg3812</a>.
  short: R. Sahu, L. Qiu, W.J. Hease, G.M. Arnold, Y. Minoguchi, P. Rabl, J.M. Fink,
    Entangling Microwaves with Light, American Association for the Advancement of
    Science, 2023.
date_created: 2023-05-31T11:39:24Z
date_published: 2023-05-18T00:00:00Z
date_updated: 2025-07-15T09:17:40Z
day: '18'
degree_awarded: PhD
department:
- _id: JoFi
doi: 10.1126/science.adg3812
ec_funded: 1
external_id:
  arxiv:
  - '2301.03315'
  isi:
  - '000996515200004'
intvolume: '       380'
isi: 1
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2301.03315
month: '05'
oa: 1
oa_version: Preprint
page: 718-721
project:
- _id: 26336814-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '758053'
  name: A Fiber Optic Transceiver for Superconducting Qubits
- _id: 9B868D20-BA93-11EA-9121-9846C619BF3A
  call_identifier: H2020
  grant_number: '899354'
  name: Quantum Local Area Networks with Superconducting Qubits
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: 26927A52-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: F07105
  name: Integrating superconducting quantum circuits
- _id: 237CBA6C-32DE-11EA-91FC-C7463DDC885E
  call_identifier: H2020
  grant_number: '862644'
  name: Quantum readout techniques and technologies
- _id: 2671EB66-B435-11E9-9278-68D0E5697425
  name: Coherent on-chip conversion of superconducting qubit signals from microwaves
    to optical frequencies
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
related_material:
  link:
  - description: News on ISTA Website
    relation: press_release
    url: https://ista.ac.at/en/news/wiring-up-quantum-circuits-with-light/
  record:
  - id: '13122'
    relation: research_data
    status: public
status: public
title: Entangling microwaves with light
type: dissertation
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 380
year: '2023'
...
---
_id: '13989'
abstract:
- lang: eng
  text: Characterizing and controlling entanglement in quantum materials is crucial
    for the development of next-generation quantum technologies. However, defining
    a quantifiable figure of merit for entanglement in macroscopic solids is theoretically
    and experimentally challenging. At equilibrium the presence of entanglement can
    be diagnosed by extracting entanglement witnesses from spectroscopic observables
    and a nonequilibrium extension of this method could lead to the discovery of novel
    dynamical phenomena. Here, we propose a systematic approach to quantify the time-dependent
    quantum Fisher information and entanglement depth of transient states of quantum
    materials with time-resolved resonant inelastic x-ray scattering. Using a quarter-filled
    extended Hubbard model as an example, we benchmark the efficiency of this approach
    and predict a light-enhanced many-body entanglement due to the proximity to a
    phase boundary. Our work sets the stage for experimentally witnessing and controlling
    entanglement in light-driven quantum materials via ultrafast spectroscopic measurements.
article_number: '3512'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jordyn
  full_name: Hales, Jordyn
  last_name: Hales
- first_name: Utkarsh
  full_name: Bajpai, Utkarsh
  last_name: Bajpai
- first_name: Tongtong
  full_name: Liu, Tongtong
  last_name: Liu
- first_name: Denitsa Rangelova
  full_name: Baykusheva, Denitsa Rangelova
  id: 71b4d059-2a03-11ee-914d-dfa3beed6530
  last_name: Baykusheva
- first_name: Mingda
  full_name: Li, Mingda
  last_name: Li
- first_name: Matteo
  full_name: Mitrano, Matteo
  last_name: Mitrano
- first_name: Yao
  full_name: Wang, Yao
  last_name: Wang
citation:
  ama: Hales J, Bajpai U, Liu T, et al. Witnessing light-driven entanglement using
    time-resolved resonant inelastic X-ray scattering. <i>Nature Communications</i>.
    2023;14. doi:<a href="https://doi.org/10.1038/s41467-023-38540-3">10.1038/s41467-023-38540-3</a>
  apa: Hales, J., Bajpai, U., Liu, T., Baykusheva, D. R., Li, M., Mitrano, M., &#38;
    Wang, Y. (2023). Witnessing light-driven entanglement using time-resolved resonant
    inelastic X-ray scattering. <i>Nature Communications</i>. Springer Nature. <a
    href="https://doi.org/10.1038/s41467-023-38540-3">https://doi.org/10.1038/s41467-023-38540-3</a>
  chicago: Hales, Jordyn, Utkarsh Bajpai, Tongtong Liu, Denitsa Rangelova Baykusheva,
    Mingda Li, Matteo Mitrano, and Yao Wang. “Witnessing Light-Driven Entanglement
    Using Time-Resolved Resonant Inelastic X-Ray Scattering.” <i>Nature Communications</i>.
    Springer Nature, 2023. <a href="https://doi.org/10.1038/s41467-023-38540-3">https://doi.org/10.1038/s41467-023-38540-3</a>.
  ieee: J. Hales <i>et al.</i>, “Witnessing light-driven entanglement using time-resolved
    resonant inelastic X-ray scattering,” <i>Nature Communications</i>, vol. 14. Springer
    Nature, 2023.
  ista: Hales J, Bajpai U, Liu T, Baykusheva DR, Li M, Mitrano M, Wang Y. 2023. Witnessing
    light-driven entanglement using time-resolved resonant inelastic X-ray scattering.
    Nature Communications. 14, 3512.
  mla: Hales, Jordyn, et al. “Witnessing Light-Driven Entanglement Using Time-Resolved
    Resonant Inelastic X-Ray Scattering.” <i>Nature Communications</i>, vol. 14, 3512,
    Springer Nature, 2023, doi:<a href="https://doi.org/10.1038/s41467-023-38540-3">10.1038/s41467-023-38540-3</a>.
  short: J. Hales, U. Bajpai, T. Liu, D.R. Baykusheva, M. Li, M. Mitrano, Y. Wang,
    Nature Communications 14 (2023).
date_created: 2023-08-09T13:06:59Z
date_published: 2023-06-14T00:00:00Z
date_updated: 2023-08-22T06:50:04Z
day: '14'
doi: 10.1038/s41467-023-38540-3
extern: '1'
external_id:
  arxiv:
  - '2209.02283'
  pmid:
  - '37316515'
intvolume: '        14'
keyword:
- General Physics and Astronomy
- General Biochemistry
- Genetics and Molecular Biology
- General Chemistry
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/s41467-023-38540-3
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Witnessing light-driven entanglement using time-resolved resonant inelastic
  X-ray scattering
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2023'
...
---
_id: '12334'
abstract:
- lang: eng
  text: Regulation of the Arp2/3 complex is required for productive nucleation of
    branched actin networks. An emerging aspect of regulation is the incorporation
    of subunit isoforms into the Arp2/3 complex. Specifically, both ArpC5 subunit
    isoforms, ArpC5 and ArpC5L, have been reported to fine-tune nucleation activity
    and branch junction stability. We have combined reverse genetics and cellular
    structural biology to describe how ArpC5 and ArpC5L differentially affect cell
    migration. Both define the structural stability of ArpC1 in branch junctions and,
    in turn, by determining protrusion characteristics, affect protein dynamics and
    actin network ultrastructure. ArpC5 isoforms also affect the positioning of members
    of the Ena/Vasodilator-stimulated phosphoprotein (VASP) family of actin filament
    elongators, which mediate ArpC5 isoform–specific effects on the actin assembly
    level. Our results suggest that ArpC5 and Ena/VASP proteins are part of a signaling
    pathway enhancing cell migration.</jats:p>
acknowledged_ssus:
- _id: ScienComp
- _id: LifeSc
- _id: Bio
- _id: EM-Fac
acknowledgement: "We would like to thank K. von Peinen and B. Denker (Helmholtz Centre
  for Infection Research, Braunschweig, Germany) for experimental and technical assistance,
  respectively.\r\nThis research was supported by the Scientific Service Units (SSUs)
  of ISTA through resources provided by Scientific Computing (SciComp), the Life Science
  Facility (LSF), the Imaging and Optics facility (IOF), and the Electron Microscopy
  Facility (EMF). We acknowledge support from ISTA and from the Austrian Science Fund
  (FWF) (P33367) to F.K.M.S., from the Research Training Group GRK2223 and the Helmholtz
  Society to K.R,. and from the Deutsche Forschungsgemeinschaft (DFG) to J.F. and
  K.R."
article_number: add6495
article_processing_charge: No
article_type: original
author:
- first_name: Florian
  full_name: Fäßler, Florian
  id: 404F5528-F248-11E8-B48F-1D18A9856A87
  last_name: Fäßler
  orcid: 0000-0001-7149-769X
- first_name: Manjunath
  full_name: Javoor, Manjunath
  id: 305ab18b-dc7d-11ea-9b2f-b58195228ea2
  last_name: Javoor
- first_name: Julia
  full_name: Datler, Julia
  id: 3B12E2E6-F248-11E8-B48F-1D18A9856A87
  last_name: Datler
  orcid: 0000-0002-3616-8580
- first_name: Hermann
  full_name: Döring, Hermann
  last_name: Döring
- first_name: Florian
  full_name: Hofer, Florian
  id: b9d234ba-9e33-11ed-95b6-cd561df280e6
  last_name: Hofer
- first_name: Georgi A
  full_name: Dimchev, Georgi A
  id: 38C393BE-F248-11E8-B48F-1D18A9856A87
  last_name: Dimchev
  orcid: 0000-0001-8370-6161
- first_name: Victor-Valentin
  full_name: Hodirnau, Victor-Valentin
  id: 3661B498-F248-11E8-B48F-1D18A9856A87
  last_name: Hodirnau
- first_name: Jan
  full_name: Faix, Jan
  last_name: Faix
- first_name: Klemens
  full_name: Rottner, Klemens
  last_name: Rottner
- first_name: Florian KM
  full_name: Schur, Florian KM
  id: 48AD8942-F248-11E8-B48F-1D18A9856A87
  last_name: Schur
  orcid: 0000-0003-4790-8078
citation:
  ama: Fäßler F, Javoor M, Datler J, et al. ArpC5 isoforms regulate Arp2/3 complex–dependent
    protrusion through differential Ena/VASP positioning. <i>Science Advances</i>.
    2023;9(3). doi:<a href="https://doi.org/10.1126/sciadv.add6495">10.1126/sciadv.add6495</a>
  apa: Fäßler, F., Javoor, M., Datler, J., Döring, H., Hofer, F., Dimchev, G. A.,
    … Schur, F. K. (2023). ArpC5 isoforms regulate Arp2/3 complex–dependent protrusion
    through differential Ena/VASP positioning. <i>Science Advances</i>. American Association
    for the Advancement of Science. <a href="https://doi.org/10.1126/sciadv.add6495">https://doi.org/10.1126/sciadv.add6495</a>
  chicago: Fäßler, Florian, Manjunath Javoor, Julia Datler, Hermann Döring, Florian
    Hofer, Georgi A Dimchev, Victor-Valentin Hodirnau, Jan Faix, Klemens Rottner,
    and Florian KM Schur. “ArpC5 Isoforms Regulate Arp2/3 Complex–Dependent Protrusion
    through Differential Ena/VASP Positioning.” <i>Science Advances</i>. American
    Association for the Advancement of Science, 2023. <a href="https://doi.org/10.1126/sciadv.add6495">https://doi.org/10.1126/sciadv.add6495</a>.
  ieee: F. Fäßler <i>et al.</i>, “ArpC5 isoforms regulate Arp2/3 complex–dependent
    protrusion through differential Ena/VASP positioning,” <i>Science Advances</i>,
    vol. 9, no. 3. American Association for the Advancement of Science, 2023.
  ista: Fäßler F, Javoor M, Datler J, Döring H, Hofer F, Dimchev GA, Hodirnau V-V,
    Faix J, Rottner K, Schur FK. 2023. ArpC5 isoforms regulate Arp2/3 complex–dependent
    protrusion through differential Ena/VASP positioning. Science Advances. 9(3),
    add6495.
  mla: Fäßler, Florian, et al. “ArpC5 Isoforms Regulate Arp2/3 Complex–Dependent Protrusion
    through Differential Ena/VASP Positioning.” <i>Science Advances</i>, vol. 9, no.
    3, add6495, American Association for the Advancement of Science, 2023, doi:<a
    href="https://doi.org/10.1126/sciadv.add6495">10.1126/sciadv.add6495</a>.
  short: F. Fäßler, M. Javoor, J. Datler, H. Döring, F. Hofer, G.A. Dimchev, V.-V.
    Hodirnau, J. Faix, K. Rottner, F.K. Schur, Science Advances 9 (2023).
date_created: 2023-01-23T07:26:42Z
date_published: 2023-01-20T00:00:00Z
date_updated: 2023-11-21T08:05:35Z
day: '20'
ddc:
- '570'
department:
- _id: FlSc
- _id: EM-Fac
doi: 10.1126/sciadv.add6495
external_id:
  isi:
  - '000964550100015'
file:
- access_level: open_access
  checksum: ce81a6d0b84170e5e8c62f6acfa15d9e
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-23T07:45:54Z
  date_updated: 2023-01-23T07:45:54Z
  file_id: '12335'
  file_name: 2023_ScienceAdvances_Faessler.pdf
  file_size: 1756234
  relation: main_file
  success: 1
file_date_updated: 2023-01-23T07:45:54Z
has_accepted_license: '1'
intvolume: '         9'
isi: 1
issue: '3'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 9B954C5C-BA93-11EA-9121-9846C619BF3A
  grant_number: P33367
  name: Structure and isoform diversity of the Arp2/3 complex
publication: Science Advances
publication_identifier:
  issn:
  - 2375-2548
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
related_material:
  record:
  - id: '14562'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: ArpC5 isoforms regulate Arp2/3 complex–dependent protrusion through differential
  Ena/VASP positioning
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2023'
...
---
_id: '13033'
abstract:
- lang: eng
  text: Current methods for assessing cell proliferation in 3D scaffolds rely on changes
    in metabolic activity or total DNA, however, direct quantification of cell number
    in 3D scaffolds remains a challenge. To address this issue, we developed an unbiased
    stereology approach that uses systematic-random sampling and thin focal-plane
    optical sectioning of the scaffolds followed by estimation of total cell number
    (StereoCount). This approach was validated against an indirect method for measuring
    the total DNA (DNA content); and the Bürker counting chamber, the current reference
    method for quantifying cell number. We assessed the total cell number for cell
    seeding density (cells per unit volume) across four values and compared the methods
    in terms of accuracy, ease-of-use and time demands. The accuracy of StereoCount
    markedly outperformed the DNA content for cases with ~ 10,000 and ~ 125,000 cells/scaffold.
    For cases with ~ 250,000 and ~ 375,000 cells/scaffold both StereoCount and DNA
    content showed lower accuracy than the Bürker but did not differ from each other.
    In terms of ease-of-use, there was a strong advantage for the StereoCount due
    to output in terms of absolute cell numbers along with the possibility for an
    overview of cell distribution and future use of automation for high throughput
    analysis. Taking together, the StereoCount method is an efficient approach for
    direct cell quantification in 3D collagen scaffolds. Its major benefit is that
    automated StereoCount could accelerate research using 3D scaffolds focused on
    drug discovery for a wide variety of human diseases.
acknowledgement: The study was supported by Project No. CZ.02.1.01/0.0/0.0/16_019/0000787
  “Fighting INfectious Diseases”, awarded by the MEYS CR, financed from EFRR, by the
  Cooperatio Program, research area DIAG and research area MED/DIAG, by the profiBONE
  project (TO01000309) benefitting from a € (1.433.000) grant from Iceland, Liechtenstein
  and Norway through the EEA Grants and the Technology Agency of the Czech Republic
  and by a Grant (#1926990) to PRM and SRC Biosciences from the National Science Foundation
  (U.S. Public Health Service). The authors acknowledge the invaluable assistance
  provided by Iveta Paurova via her support in terms of the provision of laboratory
  services.
article_number: '7959'
article_processing_charge: No
article_type: original
author:
- first_name: Anna
  full_name: Zavadakova, Anna
  last_name: Zavadakova
- first_name: Lucie
  full_name: Vistejnova, Lucie
  last_name: Vistejnova
- first_name: Tereza
  full_name: Belinova, Tereza
  id: 0bf89b6a-d28b-11eb-8bd6-f43768e4d368
  last_name: Belinova
- first_name: Filip
  full_name: Tichanek, Filip
  last_name: Tichanek
- first_name: Dagmar
  full_name: Bilikova, Dagmar
  last_name: Bilikova
- first_name: Peter R.
  full_name: Mouton, Peter R.
  last_name: Mouton
citation:
  ama: Zavadakova A, Vistejnova L, Belinova T, Tichanek F, Bilikova D, Mouton PR.
    Novel stereological method for estimation of cell counts in 3D collagen scaffolds.
    <i>Scientific Reports</i>. 2023;13(1). doi:<a href="https://doi.org/10.1038/s41598-023-35162-z">10.1038/s41598-023-35162-z</a>
  apa: Zavadakova, A., Vistejnova, L., Belinova, T., Tichanek, F., Bilikova, D., &#38;
    Mouton, P. R. (2023). Novel stereological method for estimation of cell counts
    in 3D collagen scaffolds. <i>Scientific Reports</i>. Springer Nature. <a href="https://doi.org/10.1038/s41598-023-35162-z">https://doi.org/10.1038/s41598-023-35162-z</a>
  chicago: Zavadakova, Anna, Lucie Vistejnova, Tereza Belinova, Filip Tichanek, Dagmar
    Bilikova, and Peter R. Mouton. “Novel Stereological Method for Estimation of Cell
    Counts in 3D Collagen Scaffolds.” <i>Scientific Reports</i>. Springer Nature,
    2023. <a href="https://doi.org/10.1038/s41598-023-35162-z">https://doi.org/10.1038/s41598-023-35162-z</a>.
  ieee: A. Zavadakova, L. Vistejnova, T. Belinova, F. Tichanek, D. Bilikova, and P.
    R. Mouton, “Novel stereological method for estimation of cell counts in 3D collagen
    scaffolds,” <i>Scientific Reports</i>, vol. 13, no. 1. Springer Nature, 2023.
  ista: Zavadakova A, Vistejnova L, Belinova T, Tichanek F, Bilikova D, Mouton PR.
    2023. Novel stereological method for estimation of cell counts in 3D collagen
    scaffolds. Scientific Reports. 13(1), 7959.
  mla: Zavadakova, Anna, et al. “Novel Stereological Method for Estimation of Cell
    Counts in 3D Collagen Scaffolds.” <i>Scientific Reports</i>, vol. 13, no. 1, 7959,
    Springer Nature, 2023, doi:<a href="https://doi.org/10.1038/s41598-023-35162-z">10.1038/s41598-023-35162-z</a>.
  short: A. Zavadakova, L. Vistejnova, T. Belinova, F. Tichanek, D. Bilikova, P.R.
    Mouton, Scientific Reports 13 (2023).
date_created: 2023-05-19T11:12:25Z
date_published: 2023-05-17T00:00:00Z
date_updated: 2023-08-01T14:46:06Z
day: '17'
ddc:
- '570'
department:
- _id: Bio
doi: 10.1038/s41598-023-35162-z
external_id:
  isi:
  - '000995271600104'
file:
- access_level: open_access
  checksum: 8c1b769693ff4288df8376e59ad1176d
  content_type: application/pdf
  creator: dernst
  date_created: 2023-05-22T07:57:37Z
  date_updated: 2023-05-22T07:57:37Z
  file_id: '13047'
  file_name: 2023_ScientificReports_Zavadakova.pdf
  file_size: 3055077
  relation: main_file
  success: 1
file_date_updated: 2023-05-22T07:57:37Z
has_accepted_license: '1'
intvolume: '        13'
isi: 1
issue: '1'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
publication: Scientific Reports
publication_identifier:
  issn:
  - 2045-2322
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1038/s41598-023-37265-z
scopus_import: '1'
status: public
title: Novel stereological method for estimation of cell counts in 3D collagen scaffolds
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13
year: '2023'
...
---
_id: '11723'
abstract:
- lang: eng
  text: Plant cell growth responds rapidly to various stimuli, adapting architecture
    to environmental changes. Two major endogenous signals regulating growth are the
    phytohormone auxin and the secreted peptides rapid alkalinization factors (RALFs).
    Both trigger very rapid cellular responses and also exert long-term effects [Du
    et al., Annu. Rev. Plant Biol. 71, 379–402 (2020); Blackburn et al., Plant Physiol.
    182, 1657–1666 (2020)]. However, the way, in which these distinct signaling pathways
    converge to regulate growth, remains unknown. Here, using vertical confocal microscopy
    combined with a microfluidic chip, we addressed the mechanism of RALF action on
    growth. We observed correlation between RALF1-induced rapid Arabidopsis thaliana
    root growth inhibition and apoplast alkalinization during the initial phase of
    the response, and revealed that RALF1 reversibly inhibits primary root growth
    through apoplast alkalinization faster than within 1 min. This rapid apoplast
    alkalinization was the result of RALF1-induced net H+ influx and was mediated
    by the receptor FERONIA (FER). Furthermore, we investigated the cross-talk between
    RALF1 and the auxin signaling pathways during root growth regulation. The results
    showed that RALF-FER signaling triggered auxin signaling with a delay of approximately
    1 h by up-regulating auxin biosynthesis, thus contributing to sustained RALF1-induced
    growth inhibition. This biphasic RALF1 action on growth allows plants to respond
    rapidly to environmental stimuli and also reprogram growth and development in
    the long term.
acknowledgement: We thank Sarah M. Assmann, Kris Vissenberg, and Nadine Paris for
  kindly sharing seeds; Matyáš Fendrych for initiating this project and providing
  constant support; Lukas Fiedler for revising the manuscript; and Huibin Han and
  Arseny Savin for contributing to genotyping. This work was supported by the Austrian
  Science Fund (FWF) I 3630-B25 (to J.F.) and the Doctoral Fellowship Progrmme of
  the Austrian Academy of Sciences (to L.L.) We also acknowledge Taif University Researchers
  Supporting Project TURSP-HC2021/02 and funding “Plants as a tool for sustainable
  global development (no. CZ.02.1.01/0.0/0.0/16_019/0000827).”
article_number: e2121058119
article_processing_charge: No
article_type: original
author:
- first_name: Lanxin
  full_name: Li, Lanxin
  id: 367EF8FA-F248-11E8-B48F-1D18A9856A87
  last_name: Li
  orcid: 0000-0002-5607-272X
- first_name: Huihuang
  full_name: Chen, Huihuang
  id: 83c96512-15b2-11ec-abd3-b7eede36184f
  last_name: Chen
- first_name: Saqer S.
  full_name: Alotaibi, Saqer S.
  last_name: Alotaibi
- first_name: Aleš
  full_name: Pěnčík, Aleš
  last_name: Pěnčík
- first_name: Maciek
  full_name: Adamowski, Maciek
  id: 45F536D2-F248-11E8-B48F-1D18A9856A87
  last_name: Adamowski
  orcid: 0000-0001-6463-5257
- first_name: Ondřej
  full_name: Novák, Ondřej
  last_name: Novák
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Li L, Chen H, Alotaibi SS, et al. RALF1 peptide triggers biphasic root growth
    inhibition upstream of auxin biosynthesis. <i>Proceedings of the National Academy
    of Sciences</i>. 2022;119(31). doi:<a href="https://doi.org/10.1073/pnas.2121058119">10.1073/pnas.2121058119</a>
  apa: Li, L., Chen, H., Alotaibi, S. S., Pěnčík, A., Adamowski, M., Novák, O., &#38;
    Friml, J. (2022). RALF1 peptide triggers biphasic root growth inhibition upstream
    of auxin biosynthesis. <i>Proceedings of the National Academy of Sciences</i>.
    Proceedings of the National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.2121058119">https://doi.org/10.1073/pnas.2121058119</a>
  chicago: Li, Lanxin, Huihuang Chen, Saqer S. Alotaibi, Aleš Pěnčík, Maciek Adamowski,
    Ondřej Novák, and Jiří Friml. “RALF1 Peptide Triggers Biphasic Root Growth Inhibition
    Upstream of Auxin Biosynthesis.” <i>Proceedings of the National Academy of Sciences</i>.
    Proceedings of the National Academy of Sciences, 2022. <a href="https://doi.org/10.1073/pnas.2121058119">https://doi.org/10.1073/pnas.2121058119</a>.
  ieee: L. Li <i>et al.</i>, “RALF1 peptide triggers biphasic root growth inhibition
    upstream of auxin biosynthesis,” <i>Proceedings of the National Academy of Sciences</i>,
    vol. 119, no. 31. Proceedings of the National Academy of Sciences, 2022.
  ista: Li L, Chen H, Alotaibi SS, Pěnčík A, Adamowski M, Novák O, Friml J. 2022.
    RALF1 peptide triggers biphasic root growth inhibition upstream of auxin biosynthesis.
    Proceedings of the National Academy of Sciences. 119(31), e2121058119.
  mla: Li, Lanxin, et al. “RALF1 Peptide Triggers Biphasic Root Growth Inhibition
    Upstream of Auxin Biosynthesis.” <i>Proceedings of the National Academy of Sciences</i>,
    vol. 119, no. 31, e2121058119, Proceedings of the National Academy of Sciences,
    2022, doi:<a href="https://doi.org/10.1073/pnas.2121058119">10.1073/pnas.2121058119</a>.
  short: L. Li, H. Chen, S.S. Alotaibi, A. Pěnčík, M. Adamowski, O. Novák, J. Friml,
    Proceedings of the National Academy of Sciences 119 (2022).
date_created: 2022-08-04T20:06:49Z
date_published: 2022-07-25T00:00:00Z
date_updated: 2024-10-29T10:12:30Z
day: '25'
ddc:
- '580'
department:
- _id: GradSch
- _id: JiFr
doi: 10.1073/pnas.2121058119
external_id:
  isi:
  - '000881496900002'
  pmid:
  - '35878023'
file:
- access_level: open_access
  checksum: ae6f19b0d9efba6687f9e4dc1bab1d6e
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-08T07:42:09Z
  date_updated: 2022-08-08T07:42:09Z
  file_id: '11747'
  file_name: 2022_PNAS_Li.pdf
  file_size: 2506262
  relation: main_file
  success: 1
file_date_updated: 2022-08-08T07:42:09Z
has_accepted_license: '1'
intvolume: '       119'
isi: 1
issue: '31'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
- _id: 26B4D67E-B435-11E9-9278-68D0E5697425
  grant_number: '25351'
  name: 'A Case Study of Plant Growth Regulation: Molecular Mechanism of Auxin-mediated
    Rapid Growth Inhibition in Arabidopsis Root'
publication: Proceedings of the National Academy of Sciences
publication_identifier:
  eissn:
  - 1091-6490
  issn:
  - 0027-8424
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: RALF1 peptide triggers biphasic root growth inhibition upstream of auxin biosynthesis
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 119
year: '2022'
...
---
_id: '14437'
abstract:
- lang: eng
  text: Future LEDs could be based on lead halide perovskites. A breakthrough in preparing
    device-compatible solids composed of nanoscale perovskite crystals overcomes a
    long-standing hurdle in making blue perovskite LEDs.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Hendrik
  full_name: Utzat, Hendrik
  last_name: Utzat
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
citation:
  ama: Utzat H, Ibáñez M. Molecular engineering enables bright blue LEDs. <i>Nature</i>.
    2022;612(7941):638-639. doi:<a href="https://doi.org/10.1038/d41586-022-04447-0">10.1038/d41586-022-04447-0</a>
  apa: Utzat, H., &#38; Ibáñez, M. (2022). Molecular engineering enables bright blue
    LEDs. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/d41586-022-04447-0">https://doi.org/10.1038/d41586-022-04447-0</a>
  chicago: Utzat, Hendrik, and Maria Ibáñez. “Molecular Engineering Enables Bright
    Blue LEDs.” <i>Nature</i>. Springer Nature, 2022. <a href="https://doi.org/10.1038/d41586-022-04447-0">https://doi.org/10.1038/d41586-022-04447-0</a>.
  ieee: H. Utzat and M. Ibáñez, “Molecular engineering enables bright blue LEDs,”
    <i>Nature</i>, vol. 612, no. 7941. Springer Nature, pp. 638–639, 2022.
  ista: Utzat H, Ibáñez M. 2022. Molecular engineering enables bright blue LEDs. Nature.
    612(7941), 638–639.
  mla: Utzat, Hendrik, and Maria Ibáñez. “Molecular Engineering Enables Bright Blue
    LEDs.” <i>Nature</i>, vol. 612, no. 7941, Springer Nature, 2022, pp. 638–39, doi:<a
    href="https://doi.org/10.1038/d41586-022-04447-0">10.1038/d41586-022-04447-0</a>.
  short: H. Utzat, M. Ibáñez, Nature 612 (2022) 638–639.
date_created: 2023-10-17T11:14:43Z
date_published: 2022-12-21T00:00:00Z
date_updated: 2023-10-18T06:26:30Z
day: '21'
department:
- _id: MaIb
doi: 10.1038/d41586-022-04447-0
external_id:
  pmid:
  - '36543947'
intvolume: '       612'
issue: '7941'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '12'
oa_version: None
page: 638-639
pmid: 1
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Molecular engineering enables bright blue LEDs
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 612
year: '2022'
...
---
_id: '13992'
abstract:
- lang: eng
  text: Understanding the chirality of molecular reaction pathways is essential for
    a broad range of fundamental and applied sciences. However, the current ability
    to probe chirality on the time scale of primary processes underlying chemical
    reactions remains very limited. Here, we demonstrate time-resolved photoelectron
    circular dichroism (TRPECD) with ultrashort circularly polarized vacuum-ultraviolet
    (VUV) pulses from a tabletop source. We demonstrate the capabilities of VUV-TRPECD
    by resolving the chirality changes in time during the photodissociation of atomic
    iodine from two chiral molecules. We identify several general key features of
    TRPECD, which include the ability to probe dynamical chirality along the complete
    photochemical reaction path, the sensitivity to the local chirality of the evolving
    scattering potential, and the influence of electron scattering off dissociating
    photofragments. Our results are interpreted by comparison with high-level ab-initio
    calculations of transient PECDs from molecular photoionization calculations. Our
    experimental and theoretical techniques define a general approach to femtochirality.
article_number: abq2811
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Vít
  full_name: Svoboda, Vít
  last_name: Svoboda
- first_name: Niraghatam Bhargava
  full_name: Ram, Niraghatam Bhargava
  last_name: Ram
- first_name: Denitsa Rangelova
  full_name: Baykusheva, Denitsa Rangelova
  id: 71b4d059-2a03-11ee-914d-dfa3beed6530
  last_name: Baykusheva
- first_name: Daniel
  full_name: Zindel, Daniel
  last_name: Zindel
- first_name: Max D. J.
  full_name: Waters, Max D. J.
  last_name: Waters
- first_name: Benjamin
  full_name: Spenger, Benjamin
  last_name: Spenger
- first_name: Manuel
  full_name: Ochsner, Manuel
  last_name: Ochsner
- first_name: Holger
  full_name: Herburger, Holger
  last_name: Herburger
- first_name: Jürgen
  full_name: Stohner, Jürgen
  last_name: Stohner
- first_name: Hans Jakob
  full_name: Wörner, Hans Jakob
  last_name: Wörner
citation:
  ama: Svoboda V, Ram NB, Baykusheva DR, et al. Femtosecond photoelectron circular
    dichroism of chemical reactions. <i>Science Advances</i>. 2022;8(28). doi:<a href="https://doi.org/10.1126/sciadv.abq2811">10.1126/sciadv.abq2811</a>
  apa: Svoboda, V., Ram, N. B., Baykusheva, D. R., Zindel, D., Waters, M. D. J., Spenger,
    B., … Wörner, H. J. (2022). Femtosecond photoelectron circular dichroism of chemical
    reactions. <i>Science Advances</i>. American Association for the Advancement of
    Science. <a href="https://doi.org/10.1126/sciadv.abq2811">https://doi.org/10.1126/sciadv.abq2811</a>
  chicago: Svoboda, Vít, Niraghatam Bhargava Ram, Denitsa Rangelova Baykusheva, Daniel
    Zindel, Max D. J. Waters, Benjamin Spenger, Manuel Ochsner, Holger Herburger,
    Jürgen Stohner, and Hans Jakob Wörner. “Femtosecond Photoelectron Circular Dichroism
    of Chemical Reactions.” <i>Science Advances</i>. American Association for the
    Advancement of Science, 2022. <a href="https://doi.org/10.1126/sciadv.abq2811">https://doi.org/10.1126/sciadv.abq2811</a>.
  ieee: V. Svoboda <i>et al.</i>, “Femtosecond photoelectron circular dichroism of
    chemical reactions,” <i>Science Advances</i>, vol. 8, no. 28. American Association
    for the Advancement of Science, 2022.
  ista: Svoboda V, Ram NB, Baykusheva DR, Zindel D, Waters MDJ, Spenger B, Ochsner
    M, Herburger H, Stohner J, Wörner HJ. 2022. Femtosecond photoelectron circular
    dichroism of chemical reactions. Science Advances. 8(28), abq2811.
  mla: Svoboda, Vít, et al. “Femtosecond Photoelectron Circular Dichroism of Chemical
    Reactions.” <i>Science Advances</i>, vol. 8, no. 28, abq2811, American Association
    for the Advancement of Science, 2022, doi:<a href="https://doi.org/10.1126/sciadv.abq2811">10.1126/sciadv.abq2811</a>.
  short: V. Svoboda, N.B. Ram, D.R. Baykusheva, D. Zindel, M.D.J. Waters, B. Spenger,
    M. Ochsner, H. Herburger, J. Stohner, H.J. Wörner, Science Advances 8 (2022).
date_created: 2023-08-09T13:08:04Z
date_published: 2022-07-15T00:00:00Z
date_updated: 2023-08-22T07:24:01Z
day: '15'
doi: 10.1126/sciadv.abq2811
extern: '1'
external_id:
  arxiv:
  - '2206.04099'
  pmid:
  - '35857523'
intvolume: '         8'
issue: '28'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1126/sciadv.abq2811
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: Science Advances
publication_identifier:
  eissn:
  - 2375-2548
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Femtosecond photoelectron circular dichroism of chemical reactions
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2022'
...
---
_id: '11951'
abstract:
- lang: eng
  text: The mammalian hippocampal formation (HF) plays a key role in several higher
    brain functions, such as spatial coding, learning and memory. Its simple circuit
    architecture is often viewed as a trisynaptic loop, processing input originating
    from the superficial layers of the entorhinal cortex (EC) and sending it back
    to its deeper layers. Here, we show that excitatory neurons in layer 6b of the
    mouse EC project to all sub-regions comprising the HF and receive input from the
    CA1, thalamus and claustrum. Furthermore, their output is characterized by unique
    slow-decaying excitatory postsynaptic currents capable of driving plateau-like
    potentials in their postsynaptic targets. Optogenetic inhibition of the EC-6b
    pathway affects spatial coding in CA1 pyramidal neurons, while cell ablation impairs
    not only acquisition of new spatial memories, but also degradation of previously
    acquired ones. Our results provide evidence of a functional role for cortical
    layer 6b neurons in the adult brain.
acknowledged_ssus:
- _id: Bio
- _id: SSU
acknowledgement: We thank F. Marr and A. Schlögl for technical assistance, E. Kralli-Beller
  for manuscript editing, as well as C. Sommer and the Imaging and Optics Facility
  of the Institute of Science and Technology Austria (ISTA) for image analysis scripts
  and microscopy support. We extend our gratitude to J. Wallenschus and D. Rangel
  Guerrero for technical assistance acquiring single-unit data and I. Gridchyn for
  help with single-unit clustering. Finally, we also thank B. Suter for discussions,
  A. Saunders, M. Jösch, and H. Monyer for critically reading earlier versions of
  the manuscript, C. Petersen for sharing clearing protocols, and the Scientific Service
  Units of ISTA for efficient support. This project was funded by the European Research
  Council (ERC) under the European Union’s Horizon 2020 research and innovation programme
  (ERC advanced grant No 692692 to P.J.) and the Fond zur Förderung der Wissenschaftlichen
  Forschung (Z 312-B27, Wittgenstein award for P.J. and I3600-B27 for J.G.D. and P.V.).
article_number: '4826'
article_processing_charge: No
article_type: original
author:
- first_name: Yoav
  full_name: Ben Simon, Yoav
  id: 43DF3136-F248-11E8-B48F-1D18A9856A87
  last_name: Ben Simon
- first_name: Karola
  full_name: Käfer, Karola
  id: 2DAA49AA-F248-11E8-B48F-1D18A9856A87
  last_name: Käfer
- first_name: Philipp
  full_name: Velicky, Philipp
  id: 39BDC62C-F248-11E8-B48F-1D18A9856A87
  last_name: Velicky
  orcid: 0000-0002-2340-7431
- first_name: Jozsef L
  full_name: Csicsvari, Jozsef L
  id: 3FA14672-F248-11E8-B48F-1D18A9856A87
  last_name: Csicsvari
  orcid: 0000-0002-5193-4036
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
citation:
  ama: Ben Simon Y, Käfer K, Velicky P, Csicsvari JL, Danzl JG, Jonas PM. A direct
    excitatory projection from entorhinal layer 6b neurons to the hippocampus contributes
    to spatial coding and memory. <i>Nature Communications</i>. 2022;13. doi:<a href="https://doi.org/10.1038/s41467-022-32559-8">10.1038/s41467-022-32559-8</a>
  apa: Ben Simon, Y., Käfer, K., Velicky, P., Csicsvari, J. L., Danzl, J. G., &#38;
    Jonas, P. M. (2022). A direct excitatory projection from entorhinal layer 6b neurons
    to the hippocampus contributes to spatial coding and memory. <i>Nature Communications</i>.
    Springer Nature. <a href="https://doi.org/10.1038/s41467-022-32559-8">https://doi.org/10.1038/s41467-022-32559-8</a>
  chicago: Ben Simon, Yoav, Karola Käfer, Philipp Velicky, Jozsef L Csicsvari, Johann
    G Danzl, and Peter M Jonas. “A Direct Excitatory Projection from Entorhinal Layer
    6b Neurons to the Hippocampus Contributes to Spatial Coding and Memory.” <i>Nature
    Communications</i>. Springer Nature, 2022. <a href="https://doi.org/10.1038/s41467-022-32559-8">https://doi.org/10.1038/s41467-022-32559-8</a>.
  ieee: Y. Ben Simon, K. Käfer, P. Velicky, J. L. Csicsvari, J. G. Danzl, and P. M.
    Jonas, “A direct excitatory projection from entorhinal layer 6b neurons to the
    hippocampus contributes to spatial coding and memory,” <i>Nature Communications</i>,
    vol. 13. Springer Nature, 2022.
  ista: Ben Simon Y, Käfer K, Velicky P, Csicsvari JL, Danzl JG, Jonas PM. 2022. A
    direct excitatory projection from entorhinal layer 6b neurons to the hippocampus
    contributes to spatial coding and memory. Nature Communications. 13, 4826.
  mla: Ben Simon, Yoav, et al. “A Direct Excitatory Projection from Entorhinal Layer
    6b Neurons to the Hippocampus Contributes to Spatial Coding and Memory.” <i>Nature
    Communications</i>, vol. 13, 4826, Springer Nature, 2022, doi:<a href="https://doi.org/10.1038/s41467-022-32559-8">10.1038/s41467-022-32559-8</a>.
  short: Y. Ben Simon, K. Käfer, P. Velicky, J.L. Csicsvari, J.G. Danzl, P.M. Jonas,
    Nature Communications 13 (2022).
date_created: 2022-08-24T08:25:50Z
date_published: 2022-08-16T00:00:00Z
date_updated: 2023-08-03T13:01:19Z
day: '16'
ddc:
- '570'
department:
- _id: JoCs
- _id: PeJo
- _id: JoDa
doi: 10.1038/s41467-022-32559-8
ec_funded: 1
external_id:
  isi:
  - '000841396400008'
file:
- access_level: open_access
  checksum: 405936d9e4d33625d80c093c9713a91f
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-26T11:51:40Z
  date_updated: 2022-08-26T11:51:40Z
  file_id: '11990'
  file_name: 2022_NatureCommunications_BenSimon.pdf
  file_size: 5910357
  relation: main_file
  success: 1
file_date_updated: 2022-08-26T11:51:40Z
has_accepted_license: '1'
intvolume: '        13'
isi: 1
keyword:
- General Physics and Astronomy
- General Biochemistry
- Genetics and Molecular Biology
- General Chemistry
- Multidisciplinary
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 25B7EB9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '692692'
  name: Biophysics and circuit function of a giant cortical glumatergic synapse
- _id: 265CB4D0-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03600
  name: Optical control of synaptic function via adhesion molecules
- _id: 25C5A090-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00312
  name: The Wittgenstein Prize
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: A direct excitatory projection from entorhinal layer 6b neurons to the hippocampus
  contributes to spatial coding and memory
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13
year: '2022'
...
---
_id: '12118'
abstract:
- lang: eng
  text: Hybrid semiconductor–superconductor devices hold great promise for realizing
    topological quantum computing with Majorana zero modes1,2,3,4,5. However, multiple
    claims of Majorana detection, based on either tunnelling6,7,8,9,10 or Coulomb
    blockade (CB) spectroscopy11,12, remain disputed. Here we devise an experimental
    protocol that allows us to perform both types of measurement on the same hybrid
    island by adjusting its charging energy via tunable junctions to the normal leads.
    This method reduces ambiguities of Majorana detections by checking the consistency
    between CB spectroscopy and zero-bias peaks in non-blockaded transport. Specifically,
    we observe junction-dependent, even–odd modulated, single-electron CB peaks in
    InAs/Al hybrid nanowires without concomitant low-bias peaks in tunnelling spectroscopy.
    We provide a theoretical interpretation of the experimental observations in terms
    of low-energy, longitudinally confined island states rather than overlapping Majorana
    modes. Our results highlight the importance of combined measurements on the same
    device for the identification of topological Majorana zero modes.
acknowledged_ssus:
- _id: M-Shop
- _id: NanoFab
acknowledgement: We thank P. Krogstrup for providing us with the NW materials. We
  thank A. Higginbotham, E. J. H. Lee, C. Marcus and S. Vaitiekėnas for helpful discussions
  and G. Steffensen for his input on the diffusive Little-Parks theory. This research
  was supported by the Scientific Service Units of ISTA through resources provided
  by the MIBA Machine Shop and the nanofabrication facility; the NOMIS Foundation;
  the CSIC Interdisciplinary Thematic Platform (PTI+) on Quantum Technologies (PTI-QTEP+).
  A.H. acknowledges support from H2020-MSCA-IF-2018/844511. ICN2 also acknowledges
  funding from Generalitat de Catalunya 2017 SGR 327. ICN2 is supported by the Severo
  Ochoa Program from Spanish MINECO (Grant no. SEV-2017-0706) and is funded by the
  CERCA Programme/Generalitat de Catalunya. Part of the present work has been performed
  in the framework of Universitat Autònoma de Barcelona Materials Science PhD programme.
  Authors acknowledge the use of instrumentation as well as the technical advice provided
  by the National Facility ELECMI ICTS, node ‘Laboratorio de Microscopías Avanzadas’
  at University of Zaragoza. This project has received funding from the European Union’s
  Horizon 2020 research and innovation programme under grant agreement no. 823717-ESTEEM3.
  This study was supported by MCIN with funding from European Union NextGenerationEU
  (PRTR-C17.I1) and Generalitat de Catalunya. This research is part of the CSIC programme
  for the Spanish Recovery, Transformation and Resilience Plan funded by the Recovery
  and Resilience Facility of the European Union, established by the Regulation (EU)
  2020/2094. We thank support from Grant PGC2018-097018-BI00, project FlagERA TOPOGRAPH
  (PCI2018-093026) and project NANOGEN (PID2020-116093RB-C43), funded by MCIN/AEI/10.13039/501100011033/
  and by ‘ERDF A way of making Europe’, by the European Union. M. Botifoll acknowledges
  support from SUR Generalitat de Catalunya and the EU Social Fund (project ref. 2020
  FI 00103).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Marco
  full_name: Valentini, Marco
  id: C0BB2FAC-D767-11E9-B658-BC13E6697425
  last_name: Valentini
- first_name: Maksim
  full_name: Borovkov, Maksim
  id: 2ac7a0a2-3562-11eb-9256-fbd18ea55087
  last_name: Borovkov
- first_name: Elsa
  full_name: Prada, Elsa
  last_name: Prada
- first_name: Sara
  full_name: Martí-Sánchez, Sara
  last_name: Martí-Sánchez
- first_name: Marc
  full_name: Botifoll, Marc
  last_name: Botifoll
- first_name: Andrea C
  full_name: Hofmann, Andrea C
  id: 340F461A-F248-11E8-B48F-1D18A9856A87
  last_name: Hofmann
- first_name: Jordi
  full_name: Arbiol, Jordi
  last_name: Arbiol
- first_name: Ramón
  full_name: Aguado, Ramón
  last_name: Aguado
- first_name: Pablo
  full_name: San-Jose, Pablo
  last_name: San-Jose
- first_name: Georgios
  full_name: Katsaros, Georgios
  id: 38DB5788-F248-11E8-B48F-1D18A9856A87
  last_name: Katsaros
  orcid: 0000-0001-8342-202X
citation:
  ama: Valentini M, Borovkov M, Prada E, et al. Majorana-like Coulomb spectroscopy
    in the absence of zero-bias peaks. <i>Nature</i>. 2022;612(7940):442-447. doi:<a
    href="https://doi.org/10.1038/s41586-022-05382-w">10.1038/s41586-022-05382-w</a>
  apa: Valentini, M., Borovkov, M., Prada, E., Martí-Sánchez, S., Botifoll, M., Hofmann,
    A. C., … Katsaros, G. (2022). Majorana-like Coulomb spectroscopy in the absence
    of zero-bias peaks. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-022-05382-w">https://doi.org/10.1038/s41586-022-05382-w</a>
  chicago: Valentini, Marco, Maksim Borovkov, Elsa Prada, Sara Martí-Sánchez, Marc
    Botifoll, Andrea C Hofmann, Jordi Arbiol, Ramón Aguado, Pablo San-Jose, and Georgios
    Katsaros. “Majorana-like Coulomb Spectroscopy in the Absence of Zero-Bias Peaks.”
    <i>Nature</i>. Springer Nature, 2022. <a href="https://doi.org/10.1038/s41586-022-05382-w">https://doi.org/10.1038/s41586-022-05382-w</a>.
  ieee: M. Valentini <i>et al.</i>, “Majorana-like Coulomb spectroscopy in the absence
    of zero-bias peaks,” <i>Nature</i>, vol. 612, no. 7940. Springer Nature, pp. 442–447,
    2022.
  ista: Valentini M, Borovkov M, Prada E, Martí-Sánchez S, Botifoll M, Hofmann AC,
    Arbiol J, Aguado R, San-Jose P, Katsaros G. 2022. Majorana-like Coulomb spectroscopy
    in the absence of zero-bias peaks. Nature. 612(7940), 442–447.
  mla: Valentini, Marco, et al. “Majorana-like Coulomb Spectroscopy in the Absence
    of Zero-Bias Peaks.” <i>Nature</i>, vol. 612, no. 7940, Springer Nature, 2022,
    pp. 442–47, doi:<a href="https://doi.org/10.1038/s41586-022-05382-w">10.1038/s41586-022-05382-w</a>.
  short: M. Valentini, M. Borovkov, E. Prada, S. Martí-Sánchez, M. Botifoll, A.C.
    Hofmann, J. Arbiol, R. Aguado, P. San-Jose, G. Katsaros, Nature 612 (2022) 442–447.
date_created: 2023-01-12T11:56:45Z
date_published: 2022-12-15T00:00:00Z
date_updated: 2024-02-21T12:35:33Z
day: '15'
department:
- _id: GeKa
doi: 10.1038/s41586-022-05382-w
ec_funded: 1
external_id:
  arxiv:
  - '2203.07829'
  isi:
  - '000899725400001'
intvolume: '       612'
isi: 1
issue: '7940'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2203.07829'
month: '12'
oa: 1
oa_version: Preprint
page: 442-447
project:
- _id: 26A151DA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '844511'
  name: Majorana bound states in Ge/SiGe heterostructures
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - description: News on ISTA Website
    relation: press_release
    url: https://ista.ac.at/en/news/imposter-particles-revealed-and-explained/
  record:
  - id: '13286'
    relation: dissertation_contains
    status: public
  - id: '12522'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Majorana-like Coulomb spectroscopy in the absence of zero-bias peaks
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 612
year: '2022'
...
---
_id: '12130'
abstract:
- lang: eng
  text: Germline determination is essential for species survival and evolution in
    multicellular organisms. In most flowering plants, formation of the female germline
    is initiated with specification of one megaspore mother cell (MMC) in each ovule;
    however, the molecular mechanism underlying this key event remains unclear. Here
    we report that spatially restricted auxin signaling promotes MMC fate in Arabidopsis.
    Our results show that the microRNA160 (miR160) targeted gene ARF17 (AUXIN RESPONSE
    FACTOR17) is required for promoting MMC specification by genetically interacting
    with the SPL/NZZ (SPOROCYTELESS/NOZZLE) gene. Alterations of auxin signaling cause
    formation of supernumerary MMCs in an ARF17- and SPL/NZZ-dependent manner. Furthermore,
    miR160 and ARF17 are indispensable for attaining a normal auxin maximum at the
    ovule apex via modulating the expression domain of PIN1 (PIN-FORMED1) auxin transporter.
    Our findings elucidate the mechanism by which auxin signaling promotes the acquisition
    of female germline cell fate in plants.
acknowledgement: "We thank A. Cheung,W. Lukowitz, V.Walbot, D.Weijers, and R. Yadegari
  for critically reading the manuscript; E. Xiong and G. Zhang for preparing some
  experiments, T. Schuck, J. Gonnering, and P. Engevold for plant care, the Arabidopsis
  Biological Resource Center (ABRC) for ARF10,ARF16, ARF17, EMS1,MIR160a BAC clones
  and cDNAs, the SALK_090804 seed, T. Nakagawa for pGBW vectors, Y. Zhao for the YUC1
  cDNA, Q. Chen for the pHEE401E vector, R. Yadegari for pAT5G01860::n1GFP, pAT5G45980:n1GFP,
  pAT5G50490::n1GFP, pAT5G56200:n1GFP vectors, and D.Weijers for the pGreenII KAN
  SV40-3×GFP and R2D2 vectors, W. Yang for the splmutant, Y. Qin for the pKNU::KNU-VENUS
  vector and seed, G. Tang for the STTM160/160-48 vector, and L. Colombo for pPIN1::PIN1-GFP
  spl and pin1-5 seeds. This work was supported by the US National Science Foundation
  (NSF)-Israel Binational Science Foundation (BSF) research grant to D.Z. (IOS-1322796)
  and T.A. (2012756). D.Z. also\r\ngratefully acknowledges supports of the Shaw Scientist
  Award from the Greater Milwaukee Foundation, USDA National Institute of Food and
  Agriculture (NIFA, 2022-67013-36294), the UWM Discovery and Innovation Grant, the
  Bradley Catalyst Award from the UWM Research\r\nFoundation, and WiSys and UW System
  Applied Research Funding Programs."
article_number: '6960'
article_processing_charge: No
article_type: original
author:
- first_name: Jian
  full_name: Huang, Jian
  last_name: Huang
- first_name: Lei
  full_name: Zhao, Lei
  last_name: Zhao
- first_name: Shikha
  full_name: Malik, Shikha
  last_name: Malik
- first_name: Benjamin R.
  full_name: Gentile, Benjamin R.
  last_name: Gentile
- first_name: Va
  full_name: Xiong, Va
  last_name: Xiong
- first_name: Tzahi
  full_name: Arazi, Tzahi
  last_name: Arazi
- first_name: Heather A.
  full_name: Owen, Heather A.
  last_name: Owen
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Dazhong
  full_name: Zhao, Dazhong
  last_name: Zhao
citation:
  ama: Huang J, Zhao L, Malik S, et al. Specification of female germline by microRNA
    orchestrated auxin signaling in Arabidopsis. <i>Nature Communications</i>. 2022;13.
    doi:<a href="https://doi.org/10.1038/s41467-022-34723-6">10.1038/s41467-022-34723-6</a>
  apa: Huang, J., Zhao, L., Malik, S., Gentile, B. R., Xiong, V., Arazi, T., … Zhao,
    D. (2022). Specification of female germline by microRNA orchestrated auxin signaling
    in Arabidopsis. <i>Nature Communications</i>. Springer Nature. <a href="https://doi.org/10.1038/s41467-022-34723-6">https://doi.org/10.1038/s41467-022-34723-6</a>
  chicago: Huang, Jian, Lei Zhao, Shikha Malik, Benjamin R. Gentile, Va Xiong, Tzahi
    Arazi, Heather A. Owen, Jiří Friml, and Dazhong Zhao. “Specification of Female
    Germline by MicroRNA Orchestrated Auxin Signaling in Arabidopsis.” <i>Nature Communications</i>.
    Springer Nature, 2022. <a href="https://doi.org/10.1038/s41467-022-34723-6">https://doi.org/10.1038/s41467-022-34723-6</a>.
  ieee: J. Huang <i>et al.</i>, “Specification of female germline by microRNA orchestrated
    auxin signaling in Arabidopsis,” <i>Nature Communications</i>, vol. 13. Springer
    Nature, 2022.
  ista: Huang J, Zhao L, Malik S, Gentile BR, Xiong V, Arazi T, Owen HA, Friml J,
    Zhao D. 2022. Specification of female germline by microRNA orchestrated auxin
    signaling in Arabidopsis. Nature Communications. 13, 6960.
  mla: Huang, Jian, et al. “Specification of Female Germline by MicroRNA Orchestrated
    Auxin Signaling in Arabidopsis.” <i>Nature Communications</i>, vol. 13, 6960,
    Springer Nature, 2022, doi:<a href="https://doi.org/10.1038/s41467-022-34723-6">10.1038/s41467-022-34723-6</a>.
  short: J. Huang, L. Zhao, S. Malik, B.R. Gentile, V. Xiong, T. Arazi, H.A. Owen,
    J. Friml, D. Zhao, Nature Communications 13 (2022).
date_created: 2023-01-12T12:02:41Z
date_published: 2022-11-15T00:00:00Z
date_updated: 2023-08-04T08:52:01Z
day: '15'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1038/s41467-022-34723-6
external_id:
  isi:
  - '000884426700001'
  pmid:
  - '36379956'
file:
- access_level: open_access
  checksum: 233922a7b9507d9d48591e6799e4526e
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-23T11:17:33Z
  date_updated: 2023-01-23T11:17:33Z
  file_id: '12346'
  file_name: 2022_NatureCommunications_Huang.pdf
  file_size: 3375249
  relation: main_file
  success: 1
file_date_updated: 2023-01-23T11:17:33Z
has_accepted_license: '1'
intvolume: '        13'
isi: 1
keyword:
- General Physics and Astronomy
- General Biochemistry
- Genetics and Molecular Biology
- General Chemistry
- Multidisciplinary
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Specification of female germline by microRNA orchestrated auxin signaling in
  Arabidopsis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13
year: '2022'
...
---
_id: '12138'
abstract:
- lang: eng
  text: 'Complex I is the first enzyme in the respiratory chain, which is responsible
    for energy production in mitochondria and bacteria1. Complex I couples the transfer
    of two electrons from NADH to quinone and the translocation of four protons across
    the membrane2, but the coupling mechanism remains contentious. Here we present
    cryo-electron microscopy structures of Escherichia coli complex I (EcCI) in different
    redox states, including catalytic turnover. EcCI exists mostly in the open state,
    in which the quinone cavity is exposed to the cytosol, allowing access for water
    molecules, which enable quinone movements. Unlike the mammalian paralogues3, EcCI
    can convert to the closed state only during turnover, showing that closed and
    open states are genuine turnover intermediates. The open-to-closed transition
    results in the tightly engulfed quinone cavity being connected to the central
    axis of the membrane arm, a source of substrate protons. Consistently, the proportion
    of the closed state increases with increasing pH. We propose a detailed but straightforward
    and robust mechanism comprising a ‘domino effect’ series of proton transfers and
    electrostatic interactions: the forward wave (‘dominoes stacking’) primes the
    pump, and the reverse wave (‘dominoes falling’) results in the ejection of all
    pumped protons from the distal subunit NuoL. This mechanism explains why protons
    exit exclusively from the NuoL subunit and is supported by our mutagenesis data.
    We contend that this is a universal coupling mechanism of complex I and related
    enzymes.'
acknowledged_ssus:
- _id: EM-Fac
- _id: LifeSc
- _id: ScienComp
acknowledgement: This research was supported by the Scientific Service Units (SSU)
  of IST Austria through resources provided by the Electron Microscopy Facility (EMF),
  the Life Science Facility (LSF) and the IST high-performance computing cluster.
  We thank V.-V. Hodirnau from IST Austria EMF, M. Babiak from CEITEC for assistance
  with collecting cryo-EM data and A. Charnagalov for the assistance with protein
  purification. V.K. was a recipient of a DOC Fellowship of the Austrian Academy of
  Sciences at the Institute of Science and Technology, Austria. V.K. and O.P. are
  funded by the ERC Advanced Grant 101020697 RESPICHAIN to L.S. This work was also
  supported by the Medical Research Council (UK).
article_processing_charge: No
article_type: original
author:
- first_name: Vladyslav
  full_name: Kravchuk, Vladyslav
  id: 4D62F2A6-F248-11E8-B48F-1D18A9856A87
  last_name: Kravchuk
- first_name: Olga
  full_name: Petrova, Olga
  id: 5D8C9660-5D49-11EA-8188-567B3DDC885E
  last_name: Petrova
- first_name: Domen
  full_name: Kampjut, Domen
  id: 37233050-F248-11E8-B48F-1D18A9856A87
  last_name: Kampjut
- first_name: Anna
  full_name: Wojciechowska-Bason, Anna
  last_name: Wojciechowska-Bason
- first_name: Zara
  full_name: Breese, Zara
  last_name: Breese
- first_name: Leonid A
  full_name: Sazanov, Leonid A
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
citation:
  ama: Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov
    LA. A universal coupling mechanism of respiratory complex I. <i>Nature</i>. 2022;609(7928):808-814.
    doi:<a href="https://doi.org/10.1038/s41586-022-05199-7">10.1038/s41586-022-05199-7</a>
  apa: Kravchuk, V., Petrova, O., Kampjut, D., Wojciechowska-Bason, A., Breese, Z.,
    &#38; Sazanov, L. A. (2022). A universal coupling mechanism of respiratory complex
    I. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-022-05199-7">https://doi.org/10.1038/s41586-022-05199-7</a>
  chicago: Kravchuk, Vladyslav, Olga Petrova, Domen Kampjut, Anna Wojciechowska-Bason,
    Zara Breese, and Leonid A Sazanov. “A Universal Coupling Mechanism of Respiratory
    Complex I.” <i>Nature</i>. Springer Nature, 2022. <a href="https://doi.org/10.1038/s41586-022-05199-7">https://doi.org/10.1038/s41586-022-05199-7</a>.
  ieee: V. Kravchuk, O. Petrova, D. Kampjut, A. Wojciechowska-Bason, Z. Breese, and
    L. A. Sazanov, “A universal coupling mechanism of respiratory complex I,” <i>Nature</i>,
    vol. 609, no. 7928. Springer Nature, pp. 808–814, 2022.
  ista: Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov
    LA. 2022. A universal coupling mechanism of respiratory complex I. Nature. 609(7928),
    808–814.
  mla: Kravchuk, Vladyslav, et al. “A Universal Coupling Mechanism of Respiratory
    Complex I.” <i>Nature</i>, vol. 609, no. 7928, Springer Nature, 2022, pp. 808–14,
    doi:<a href="https://doi.org/10.1038/s41586-022-05199-7">10.1038/s41586-022-05199-7</a>.
  short: V. Kravchuk, O. Petrova, D. Kampjut, A. Wojciechowska-Bason, Z. Breese, L.A.
    Sazanov, Nature 609 (2022) 808–814.
date_created: 2023-01-12T12:04:33Z
date_published: 2022-09-22T00:00:00Z
date_updated: 2023-08-04T08:54:52Z
day: '22'
ddc:
- '572'
department:
- _id: LeSa
doi: 10.1038/s41586-022-05199-7
ec_funded: 1
external_id:
  isi:
  - '000854788200001'
  pmid:
  - '36104567'
file:
- access_level: open_access
  checksum: d42a93e24f59e883ef0b5429832391d0
  content_type: application/pdf
  creator: lsazanov
  date_created: 2023-05-30T17:05:31Z
  date_updated: 2023-05-30T17:05:31Z
  file_id: '13104'
  file_name: EcCxI_manuscript_rev3_noSI_updated_withFigs_opt.pdf
  file_size: 1425655
  relation: main_file
  success: 1
- access_level: open_access
  checksum: 5422bc0a73b3daadafa262c7ea6deae3
  content_type: application/pdf
  creator: lsazanov
  date_created: 2023-05-30T17:07:05Z
  date_updated: 2023-05-30T17:07:05Z
  file_id: '13105'
  file_name: EcCxI_manuscript_rev3_SI_All_opt_upd.pdf
  file_size: 9842513
  relation: main_file
  success: 1
file_date_updated: 2023-05-30T17:07:05Z
has_accepted_license: '1'
intvolume: '       609'
isi: 1
issue: '7928'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '09'
oa: 1
oa_version: Submitted Version
page: 808-814
pmid: 1
project:
- _id: 238A0A5A-32DE-11EA-91FC-C7463DDC885E
  grant_number: '25541'
  name: 'Structural characterization of E. coli complex I: an important mechanistic
    model'
- _id: 627abdeb-2b32-11ec-9570-ec31a97243d3
  call_identifier: H2020
  grant_number: '101020697'
  name: Structure and mechanism of respiratory chain molecular machines
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1038/s41586-022-05457-8
  - description: News on ISTA website
    relation: press_release
    url: https://ista.ac.at/en/news/proton-dominos-kick-off-life/
  record:
  - id: '12781'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: A universal coupling mechanism of respiratory complex I
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 609
year: '2022'
...
---
_id: '12208'
abstract:
- lang: eng
  text: The inadequate understanding of the mechanisms that reversibly convert molecular
    sulfur (S) into lithium sulfide (Li<jats:sub>2</jats:sub>S) via soluble polysulfides
    (PSs) formation impedes the development of high-performance lithium-sulfur (Li-S)
    batteries with non-aqueous electrolyte solutions. Here, we use operando small
    and wide angle X-ray scattering and operando small angle neutron scattering (SANS)
    measurements to track the nucleation, growth and dissolution of solid deposits
    from atomic to sub-micron scales during real-time Li-S cell operation. In particular,
    stochastic modelling based on the SANS data allows quantifying the nanoscale phase
    evolution during battery cycling. We show that next to nano-crystalline Li<jats:sub>2</jats:sub>S
    the deposit comprises solid short-chain PSs particles. The analysis of the experimental
    data suggests that initially, Li<jats:sub>2</jats:sub>S<jats:sub>2</jats:sub>
    precipitates from the solution and then is partially converted via solid-state
    electroreduction to Li<jats:sub>2</jats:sub>S. We further demonstrate that mass
    transport, rather than electron transport through a thin passivating film, limits
    the discharge capacity and rate performance in Li-S cells.
acknowledgement: "This project has received funding from the European Union’s Horizon
  2020 research and innovation program under the Marie Skłodowska-Curie grant NanoEvolution,
  grant agreement No 894042. The authors acknowledge the CERIC-ERIC Consortium for
  the access to the Austrian SAXS beamline and TU Graz for support through the Lead
  Project LP-03.\r\nLikewise, the use of SOMAPP Lab, a core facility supported by
  the Austrian Federal Ministry of Education, Science and Research, the Graz University
  of Technology, the University of Graz, and Anton Paar GmbH is acknowledged. In addition,
  the authors acknowledge access to the D-22SANS beamline at the ILL neutron source.
  Electron microscopy measurements were performed at the Scientific Scenter for Optical
  and Electron Microscopy (ScopeM) of the Swiss Federal Institute of Technology. C.P.
  and J.M.M. thank A. Senol for her support with the SANS\r\nbeamtime preparation.
  S.D.T, A.V. and R.D. acknowledge the financial support by the Slovenian Research
  Agency (ARRS) research core funding P2-0393 and P2-0423. Furthermore, A.V. acknowledge
  the funding from the Slovenian Research Agency, research project Z2−1863.\r\nS.A.F.
  is indebted to IST Austria for support. "
article_number: '6326'
article_processing_charge: No
article_type: original
author:
- first_name: Christian
  full_name: Prehal, Christian
  last_name: Prehal
- first_name: Jean-Marc
  full_name: von Mentlen, Jean-Marc
  last_name: von Mentlen
- first_name: Sara
  full_name: Drvarič Talian, Sara
  last_name: Drvarič Talian
- first_name: Alen
  full_name: Vizintin, Alen
  last_name: Vizintin
- first_name: Robert
  full_name: Dominko, Robert
  last_name: Dominko
- first_name: Heinz
  full_name: Amenitsch, Heinz
  last_name: Amenitsch
- first_name: Lionel
  full_name: Porcar, Lionel
  last_name: Porcar
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Vanessa
  full_name: Wood, Vanessa
  last_name: Wood
citation:
  ama: Prehal C, von Mentlen J-M, Drvarič Talian S, et al. On the nanoscale structural
    evolution of solid discharge products in lithium-sulfur batteries using operando
    scattering. <i>Nature Communications</i>. 2022;13. doi:<a href="https://doi.org/10.1038/s41467-022-33931-4">10.1038/s41467-022-33931-4</a>
  apa: Prehal, C., von Mentlen, J.-M., Drvarič Talian, S., Vizintin, A., Dominko,
    R., Amenitsch, H., … Wood, V. (2022). On the nanoscale structural evolution of
    solid discharge products in lithium-sulfur batteries using operando scattering.
    <i>Nature Communications</i>. Springer Nature. <a href="https://doi.org/10.1038/s41467-022-33931-4">https://doi.org/10.1038/s41467-022-33931-4</a>
  chicago: Prehal, Christian, Jean-Marc von Mentlen, Sara Drvarič Talian, Alen Vizintin,
    Robert Dominko, Heinz Amenitsch, Lionel Porcar, Stefan Alexander Freunberger,
    and Vanessa Wood. “On the Nanoscale Structural Evolution of Solid Discharge Products
    in Lithium-Sulfur Batteries Using Operando Scattering.” <i>Nature Communications</i>.
    Springer Nature, 2022. <a href="https://doi.org/10.1038/s41467-022-33931-4">https://doi.org/10.1038/s41467-022-33931-4</a>.
  ieee: C. Prehal <i>et al.</i>, “On the nanoscale structural evolution of solid discharge
    products in lithium-sulfur batteries using operando scattering,” <i>Nature Communications</i>,
    vol. 13. Springer Nature, 2022.
  ista: Prehal C, von Mentlen J-M, Drvarič Talian S, Vizintin A, Dominko R, Amenitsch
    H, Porcar L, Freunberger SA, Wood V. 2022. On the nanoscale structural evolution
    of solid discharge products in lithium-sulfur batteries using operando scattering.
    Nature Communications. 13, 6326.
  mla: Prehal, Christian, et al. “On the Nanoscale Structural Evolution of Solid Discharge
    Products in Lithium-Sulfur Batteries Using Operando Scattering.” <i>Nature Communications</i>,
    vol. 13, 6326, Springer Nature, 2022, doi:<a href="https://doi.org/10.1038/s41467-022-33931-4">10.1038/s41467-022-33931-4</a>.
  short: C. Prehal, J.-M. von Mentlen, S. Drvarič Talian, A. Vizintin, R. Dominko,
    H. Amenitsch, L. Porcar, S.A. Freunberger, V. Wood, Nature Communications 13 (2022).
date_created: 2023-01-16T09:45:09Z
date_published: 2022-10-24T00:00:00Z
date_updated: 2023-08-04T09:15:31Z
day: '24'
ddc:
- '540'
department:
- _id: StFr
doi: 10.1038/s41467-022-33931-4
external_id:
  isi:
  - '000871563700006'
  pmid:
  - '36280671'
file:
- access_level: open_access
  checksum: 5034336dbf0f860030ef745c08df9e0e
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-27T07:19:11Z
  date_updated: 2023-01-27T07:19:11Z
  file_id: '12411'
  file_name: 2022_NatureCommunications_Prehal.pdf
  file_size: 4216931
  relation: main_file
  success: 1
file_date_updated: 2023-01-27T07:19:11Z
has_accepted_license: '1'
intvolume: '        13'
isi: 1
keyword:
- General Physics and Astronomy
- General Biochemistry
- Genetics and Molecular Biology
- General Chemistry
- Multidisciplinary
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the nanoscale structural evolution of solid discharge products in lithium-sulfur
  batteries using operando scattering
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13
year: '2022'
...
---
_id: '12217'
abstract:
- lang: eng
  text: The development dynamics and self-organization of glandular branched epithelia
    is of utmost importance for our understanding of diverse processes ranging from
    normal tissue growth to the growth of cancerous tissues. Using single primary
    murine pancreatic ductal adenocarcinoma (PDAC) cells embedded in a collagen matrix
    and adapted media supplementation, we generate organoids that self-organize into
    highly branched structures displaying a seamless lumen connecting terminal end
    buds, replicating in vivo PDAC architecture. We identify distinct morphogenesis
    phases, each characterized by a unique pattern of cell invasion, matrix deformation,
    protein expression, and respective molecular dependencies. We propose a minimal
    theoretical model of a branching and proliferating tissue, capturing the dynamics
    of the first phases. Observing the interaction of morphogenesis, mechanical environment
    and gene expression in vitro sets a benchmark for the understanding of self-organization
    processes governing complex organoid structure formation processes and branching
    morphogenesis.
acknowledgement: "A.R.B. acknowledges the financial support of the European Research
  Council (ERC) through the funding of the grant Principles of Integrin Mechanics
  and Adhesion (PoINT) and the German Research Foundation (DFG, SFB 1032, project
  ID 201269156). E.H. was supported by the European Union (European Research Council
  Starting Grant 851288). D.S., M.R., and R.R. acknowledge the support by the German
  Research Foundation (DFG, SFB1321 Modeling and Targeting Pancreatic Cancer, Project
  S01, project ID 329628492). C.S. and M.R. acknowledge the support by the German
  Research Foundation (DFG, SFB1321 Modeling and Targeting Pancreatic Cancer, Project
  12, project ID 329628492). M.R. was supported by the German Research Foundation
  (DFG RE 3723/4-1). A.P. and M.R. were supported by the German Cancer Aid (Max-Eder
  Program 111273 and 70114328).\r\nOpen Access funding enabled and organized by Projekt
  DEAL."
article_number: '5219'
article_processing_charge: No
article_type: original
author:
- first_name: S.
  full_name: Randriamanantsoa, S.
  last_name: Randriamanantsoa
- first_name: A.
  full_name: Papargyriou, A.
  last_name: Papargyriou
- first_name: H. C.
  full_name: Maurer, H. C.
  last_name: Maurer
- first_name: K.
  full_name: Peschke, K.
  last_name: Peschke
- first_name: M.
  full_name: Schuster, M.
  last_name: Schuster
- first_name: G.
  full_name: Zecchin, G.
  last_name: Zecchin
- first_name: K.
  full_name: Steiger, K.
  last_name: Steiger
- first_name: R.
  full_name: Öllinger, R.
  last_name: Öllinger
- first_name: D.
  full_name: Saur, D.
  last_name: Saur
- first_name: C.
  full_name: Scheel, C.
  last_name: Scheel
- first_name: R.
  full_name: Rad, R.
  last_name: Rad
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
- first_name: M.
  full_name: Reichert, M.
  last_name: Reichert
- first_name: A. R.
  full_name: Bausch, A. R.
  last_name: Bausch
citation:
  ama: Randriamanantsoa S, Papargyriou A, Maurer HC, et al. Spatiotemporal dynamics
    of self-organized branching in pancreas-derived organoids. <i>Nature Communications</i>.
    2022;13. doi:<a href="https://doi.org/10.1038/s41467-022-32806-y">10.1038/s41467-022-32806-y</a>
  apa: Randriamanantsoa, S., Papargyriou, A., Maurer, H. C., Peschke, K., Schuster,
    M., Zecchin, G., … Bausch, A. R. (2022). Spatiotemporal dynamics of self-organized
    branching in pancreas-derived organoids. <i>Nature Communications</i>. Springer
    Nature. <a href="https://doi.org/10.1038/s41467-022-32806-y">https://doi.org/10.1038/s41467-022-32806-y</a>
  chicago: Randriamanantsoa, S., A. Papargyriou, H. C. Maurer, K. Peschke, M. Schuster,
    G. Zecchin, K. Steiger, et al. “Spatiotemporal Dynamics of Self-Organized Branching
    in Pancreas-Derived Organoids.” <i>Nature Communications</i>. Springer Nature,
    2022. <a href="https://doi.org/10.1038/s41467-022-32806-y">https://doi.org/10.1038/s41467-022-32806-y</a>.
  ieee: S. Randriamanantsoa <i>et al.</i>, “Spatiotemporal dynamics of self-organized
    branching in pancreas-derived organoids,” <i>Nature Communications</i>, vol. 13.
    Springer Nature, 2022.
  ista: Randriamanantsoa S, Papargyriou A, Maurer HC, Peschke K, Schuster M, Zecchin
    G, Steiger K, Öllinger R, Saur D, Scheel C, Rad R, Hannezo EB, Reichert M, Bausch
    AR. 2022. Spatiotemporal dynamics of self-organized branching in pancreas-derived
    organoids. Nature Communications. 13, 5219.
  mla: Randriamanantsoa, S., et al. “Spatiotemporal Dynamics of Self-Organized Branching
    in Pancreas-Derived Organoids.” <i>Nature Communications</i>, vol. 13, 5219, Springer
    Nature, 2022, doi:<a href="https://doi.org/10.1038/s41467-022-32806-y">10.1038/s41467-022-32806-y</a>.
  short: S. Randriamanantsoa, A. Papargyriou, H.C. Maurer, K. Peschke, M. Schuster,
    G. Zecchin, K. Steiger, R. Öllinger, D. Saur, C. Scheel, R. Rad, E.B. Hannezo,
    M. Reichert, A.R. Bausch, Nature Communications 13 (2022).
date_created: 2023-01-16T09:46:53Z
date_published: 2022-09-05T00:00:00Z
date_updated: 2023-08-04T09:25:23Z
day: '05'
ddc:
- '570'
department:
- _id: EdHa
doi: 10.1038/s41467-022-32806-y
ec_funded: 1
external_id:
  isi:
  - '000850348400025'
file:
- access_level: open_access
  checksum: 295261b5172274fd5b8f85a6a6058828
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-27T08:14:48Z
  date_updated: 2023-01-27T08:14:48Z
  file_id: '12416'
  file_name: 2022_NatureCommunications_Randriamanantsoa.pdf
  file_size: 22645149
  relation: main_file
  success: 1
file_date_updated: 2023-01-27T08:14:48Z
has_accepted_license: '1'
intvolume: '        13'
isi: 1
keyword:
- General Physics and Astronomy
- General Biochemistry
- Genetics and Molecular Biology
- General Chemistry
- Multidisciplinary
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 05943252-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '851288'
  name: Design Principles of Branching Morphogenesis
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '13068'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Spatiotemporal dynamics of self-organized branching in pancreas-derived organoids
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13
year: '2022'
...
---
_id: '12225'
abstract:
- lang: eng
  text: In social networks, users often engage with like-minded peers. This selective
    exposure to opinions might result in echo chambers, i.e., political fragmentation
    and social polarization of user interactions. When echo chambers form, opinions
    have a bimodal distribution with two peaks on opposite sides. In certain issues,
    where either extreme positions contain a degree of misinformation, neutral consensus
    is preferable for promoting discourse. In this paper, we use an opinion dynamics
    model that naturally forms echo chambers in order to find a feedback mechanism
    that bridges these communities and leads to a neutral consensus. We introduce the
    <jats:italic>random dynamical nudge</jats:italic> (RDN), which presents each agent
    with input from a random selection of other agents’ opinions and does not require
    surveillance of every person’s opinions. Our computational results in two different
    models suggest that the RDN leads to a unimodal distribution of opinions centered
    around the neutral consensus. Furthermore, the RDN is effective both for preventing
    the formation of echo chambers and also for depolarizing existing echo chambers.
    Due to the simple and robust nature of the RDN, social media networks might be
    able to implement a version of this self-feedback mechanism, when appropriate,
    to prevent the segregation of online communities on complex social issues.
acknowledgement: CBC and AKN would like to thank Neuromatch Academy https://www.neuromatchacademy.org
  for introducing the authors to each other. We thank Dr. Krešimir Josic (University
  of Houston) , Fabian Baumann (Humboldt University) and Dr. Igor M. Sokolov (Humboldt
  University) for carefully reading the early versions of the manuscript and providing
  constructive feedback. CBC is supported by the German Deutscher Akademischer Austauschdienst
  (DAAD, https://daad.de), the South African National Research Foundation (NRF, https://nrf.ac.za),
  the University of Cape Town (UCT, https://uct.ac.za), and the NOMIS Foundation through
  the NOMIS Fellowships at IST Austria program (https://nomisfoundation.ch). SVV appreciate
  the generosity of Tecnológico de Monterrey for covering the publication fee.
article_number: '9234'
article_processing_charge: No
article_type: original
author:
- first_name: Christopher
  full_name: Currin, Christopher
  id: e8321fc5-3091-11eb-8a53-83f309a11ac9
  last_name: Currin
  orcid: 0000-0002-4809-5059
- first_name: Sebastián Vallejo
  full_name: Vera, Sebastián Vallejo
  last_name: Vera
- first_name: Ali
  full_name: Khaledi-Nasab, Ali
  last_name: Khaledi-Nasab
citation:
  ama: Currin C, Vera SV, Khaledi-Nasab A. Depolarization of echo chambers by random
    dynamical nudge. <i>Scientific Reports</i>. 2022;12. doi:<a href="https://doi.org/10.1038/s41598-022-12494-w">10.1038/s41598-022-12494-w</a>
  apa: Currin, C., Vera, S. V., &#38; Khaledi-Nasab, A. (2022). Depolarization of
    echo chambers by random dynamical nudge. <i>Scientific Reports</i>. Springer Nature.
    <a href="https://doi.org/10.1038/s41598-022-12494-w">https://doi.org/10.1038/s41598-022-12494-w</a>
  chicago: Currin, Christopher, Sebastián Vallejo Vera, and Ali Khaledi-Nasab. “Depolarization
    of Echo Chambers by Random Dynamical Nudge.” <i>Scientific Reports</i>. Springer
    Nature, 2022. <a href="https://doi.org/10.1038/s41598-022-12494-w">https://doi.org/10.1038/s41598-022-12494-w</a>.
  ieee: C. Currin, S. V. Vera, and A. Khaledi-Nasab, “Depolarization of echo chambers
    by random dynamical nudge,” <i>Scientific Reports</i>, vol. 12. Springer Nature,
    2022.
  ista: Currin C, Vera SV, Khaledi-Nasab A. 2022. Depolarization of echo chambers
    by random dynamical nudge. Scientific Reports. 12, 9234.
  mla: Currin, Christopher, et al. “Depolarization of Echo Chambers by Random Dynamical
    Nudge.” <i>Scientific Reports</i>, vol. 12, 9234, Springer Nature, 2022, doi:<a
    href="https://doi.org/10.1038/s41598-022-12494-w">10.1038/s41598-022-12494-w</a>.
  short: C. Currin, S.V. Vera, A. Khaledi-Nasab, Scientific Reports 12 (2022).
date_created: 2023-01-16T09:48:30Z
date_published: 2022-06-02T00:00:00Z
date_updated: 2023-08-04T09:26:30Z
day: '02'
ddc:
- '570'
department:
- _id: TiVo
doi: 10.1038/s41598-022-12494-w
external_id:
  isi:
  - '000805561200024'
  pmid:
  - '35654942'
file:
- access_level: open_access
  checksum: e024a75f14ce5667795a31e44a259c52
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-27T08:56:18Z
  date_updated: 2023-01-27T08:56:18Z
  file_id: '12418'
  file_name: 2022_ScientificReports_Currin.pdf
  file_size: 3625627
  relation: main_file
  success: 1
file_date_updated: 2023-01-27T08:56:18Z
has_accepted_license: '1'
intvolume: '        12'
isi: 1
keyword:
- Multidisciplinary
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
publication: Scientific Reports
publication_identifier:
  issn:
  - 2045-2322
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Depolarization of echo chambers by random dynamical nudge
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 12
year: '2022'
...
---
_id: '12274'
abstract:
- lang: eng
  text: The morphology and functionality of the epithelial lining differ along the
    intestinal tract, but tissue renewal at all sites is driven by stem cells at the
    base of crypts1,2,3. Whether stem cell numbers and behaviour vary at different
    sites is unknown. Here we show using intravital microscopy that, despite similarities
    in the number and distribution of proliferative cells with an Lgr5 signature in
    mice, small intestinal crypts contain twice as many effective stem cells as large
    intestinal crypts. We find that, although passively displaced by a conveyor-belt-like
    upward movement, small intestinal cells positioned away from the crypt base can
    function as long-term effective stem cells owing to Wnt-dependent retrograde cellular
    movement. By contrast, the near absence of retrograde movement in the large intestine
    restricts cell repositioning, leading to a reduction in effective stem cell number.
    Moreover, after suppression of the retrograde movement in the small intestine,
    the number of effective stem cells is reduced, and the rate of monoclonal conversion
    of crypts is accelerated. Together, these results show that the number of effective
    stem cells is determined by active retrograde movement, revealing a new channel
    of stem cell regulation that can be experimentally and pharmacologically manipulated.
acknowledgement: We thank the members of the van Rheenen laboratory for reading the
  manuscript, and the members of the bioimaging, FACS and animal facility of the NKI
  for experimental support. We acknowledge the staff at the MedH Flow Cytometry core
  facility, Karolinska Institutet, and LCI facility/Nikon Center of Excellence, Karolinska
  Institutet. This work was financially supported by the Netherlands Organization
  of Scientific Research NWO (Veni grant 863.15.011 to S.I.J.E. and Vici grant 09150182110004
  to J.v.R.) and the CancerGenomics.nl (Netherlands Organisation for Scientific Research)
  program (to J.v.R.) the Doctor Josef Steiner Foundation (to J.v.R). B.D.S. acknowledges
  funding from the Royal Society E.P. Abraham Research Professorship (RP\R1\180165)
  and the Wellcome Trust (098357/Z/12/Z and 219478/Z/19/Z). B.C.-M. acknowledges the
  support of the field of excellence ‘Complexity of life in basic research and innovation’
  of the University of Graz. O.J.S. and their laboratory acknowledge CRUK core funding
  to the CRUK Beatson Institute (A17196 and A31287) and CRUK core funding to the Sansom
  laboratory (A21139). P.K. and their laboratory are supported by grants from the
  Swedish Research Council (2018-03078), Cancerfonden (190634), Academy of Finland
  Centre of Excellence (266869, 304591 and 320185) and the Jane and Aatos Erkko Foundation.
  P.L. has received funding from the European Research Council (ERC) under the European
  Union’s Horizon 2020 research and innovation programme (grant agreement no. 758617).
  E.H. acknowledges funding from the European Research Council (ERC) under the European
  Union’s Horizon 2020 research and innovation programme (grant agreement no. 851288).
article_processing_charge: No
article_type: original
author:
- first_name: Maria
  full_name: Azkanaz, Maria
  last_name: Azkanaz
- first_name: Bernat
  full_name: Corominas-Murtra, Bernat
  id: 43BE2298-F248-11E8-B48F-1D18A9856A87
  last_name: Corominas-Murtra
  orcid: 0000-0001-9806-5643
- first_name: Saskia I. J.
  full_name: Ellenbroek, Saskia I. J.
  last_name: Ellenbroek
- first_name: Lotte
  full_name: Bruens, Lotte
  last_name: Bruens
- first_name: Anna T.
  full_name: Webb, Anna T.
  last_name: Webb
- first_name: Dimitrios
  full_name: Laskaris, Dimitrios
  last_name: Laskaris
- first_name: Koen C.
  full_name: Oost, Koen C.
  last_name: Oost
- first_name: Simona J. A.
  full_name: Lafirenze, Simona J. A.
  last_name: Lafirenze
- first_name: Karl
  full_name: Annusver, Karl
  last_name: Annusver
- first_name: Hendrik A.
  full_name: Messal, Hendrik A.
  last_name: Messal
- first_name: Sharif
  full_name: Iqbal, Sharif
  last_name: Iqbal
- first_name: Dustin J.
  full_name: Flanagan, Dustin J.
  last_name: Flanagan
- first_name: David J.
  full_name: Huels, David J.
  last_name: Huels
- first_name: Felipe
  full_name: Rojas-Rodríguez, Felipe
  last_name: Rojas-Rodríguez
- first_name: Miguel
  full_name: Vizoso, Miguel
  last_name: Vizoso
- first_name: Maria
  full_name: Kasper, Maria
  last_name: Kasper
- first_name: Owen J.
  full_name: Sansom, Owen J.
  last_name: Sansom
- first_name: Hugo J.
  full_name: Snippert, Hugo J.
  last_name: Snippert
- first_name: Prisca
  full_name: Liberali, Prisca
  last_name: Liberali
- first_name: Benjamin D.
  full_name: Simons, Benjamin D.
  last_name: Simons
- first_name: Pekka
  full_name: Katajisto, Pekka
  last_name: Katajisto
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
- first_name: Jacco
  full_name: van Rheenen, Jacco
  last_name: van Rheenen
citation:
  ama: Azkanaz M, Corominas-Murtra B, Ellenbroek SIJ, et al. Retrograde movements
    determine effective stem cell numbers in the intestine. <i>Nature</i>. 2022;607(7919):548-554.
    doi:<a href="https://doi.org/10.1038/s41586-022-04962-0">10.1038/s41586-022-04962-0</a>
  apa: Azkanaz, M., Corominas-Murtra, B., Ellenbroek, S. I. J., Bruens, L., Webb,
    A. T., Laskaris, D., … van Rheenen, J. (2022). Retrograde movements determine
    effective stem cell numbers in the intestine. <i>Nature</i>. Springer Nature.
    <a href="https://doi.org/10.1038/s41586-022-04962-0">https://doi.org/10.1038/s41586-022-04962-0</a>
  chicago: Azkanaz, Maria, Bernat Corominas-Murtra, Saskia I. J. Ellenbroek, Lotte
    Bruens, Anna T. Webb, Dimitrios Laskaris, Koen C. Oost, et al. “Retrograde Movements
    Determine Effective Stem Cell Numbers in the Intestine.” <i>Nature</i>. Springer
    Nature, 2022. <a href="https://doi.org/10.1038/s41586-022-04962-0">https://doi.org/10.1038/s41586-022-04962-0</a>.
  ieee: M. Azkanaz <i>et al.</i>, “Retrograde movements determine effective stem cell
    numbers in the intestine,” <i>Nature</i>, vol. 607, no. 7919. Springer Nature,
    pp. 548–554, 2022.
  ista: Azkanaz M, Corominas-Murtra B, Ellenbroek SIJ, Bruens L, Webb AT, Laskaris
    D, Oost KC, Lafirenze SJA, Annusver K, Messal HA, Iqbal S, Flanagan DJ, Huels
    DJ, Rojas-Rodríguez F, Vizoso M, Kasper M, Sansom OJ, Snippert HJ, Liberali P,
    Simons BD, Katajisto P, Hannezo EB, van Rheenen J. 2022. Retrograde movements
    determine effective stem cell numbers in the intestine. Nature. 607(7919), 548–554.
  mla: Azkanaz, Maria, et al. “Retrograde Movements Determine Effective Stem Cell
    Numbers in the Intestine.” <i>Nature</i>, vol. 607, no. 7919, Springer Nature,
    2022, pp. 548–54, doi:<a href="https://doi.org/10.1038/s41586-022-04962-0">10.1038/s41586-022-04962-0</a>.
  short: M. Azkanaz, B. Corominas-Murtra, S.I.J. Ellenbroek, L. Bruens, A.T. Webb,
    D. Laskaris, K.C. Oost, S.J.A. Lafirenze, K. Annusver, H.A. Messal, S. Iqbal,
    D.J. Flanagan, D.J. Huels, F. Rojas-Rodríguez, M. Vizoso, M. Kasper, O.J. Sansom,
    H.J. Snippert, P. Liberali, B.D. Simons, P. Katajisto, E.B. Hannezo, J. van Rheenen,
    Nature 607 (2022) 548–554.
date_created: 2023-01-16T10:01:29Z
date_published: 2022-07-13T00:00:00Z
date_updated: 2023-10-03T11:16:30Z
day: '13'
department:
- _id: EdHa
doi: 10.1038/s41586-022-04962-0
ec_funded: 1
external_id:
  isi:
  - '000824430000004'
  pmid:
  - '35831497'
intvolume: '       607'
isi: 1
issue: '7919'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://helda.helsinki.fi/items/94433455-4854-45c0-9de8-7326caea8780
month: '07'
oa: 1
oa_version: Submitted Version
page: 548-554
pmid: 1
project:
- _id: 05943252-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '851288'
  name: Design Principles of Branching Morphogenesis
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/JaccovanRheenenLab/Retrograde_movement_Azkanaz_Nature_2022
scopus_import: '1'
status: public
title: Retrograde movements determine effective stem cell numbers in the intestine
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 607
year: '2022'
...
---
_id: '12577'
abstract:
- lang: eng
  text: Glaciers are key components of the mountain water towers of Asia and are vital
    for downstream domestic, agricultural, and industrial uses. The glacier mass loss
    rate over the southeastern Tibetan Plateau is among the highest in Asia and has
    accelerated in recent decades. This acceleration has been attributed to increased
    warming, but the mechanisms behind these glaciers’ high sensitivity to warming
    remain unclear, while the influence of changes in precipitation over the past
    decades is poorly quantified. Here, we reconstruct glacier mass changes and catchment
    runoff since 1975 at a benchmark glacier, Parlung No. 4, to shed light on the
    drivers of recent mass losses for the monsoonal, spring-accumulation glaciers
    of the Tibetan Plateau. Our modeling demonstrates how a temperature increase (mean
    of 0.39<jats:sup>∘</jats:sup>C ⋅dec<jats:sup>−1</jats:sup>since 1990) has accelerated
    mass loss rates by altering both the ablation and accumulation regimes in a complex
    manner. The majority of the post-2000 mass loss occurred during the monsoon months,
    caused by simultaneous decreases in the solid precipitation ratio (from 0.70 to
    0.56) and precipitation amount (–10%), leading to reduced monsoon accumulation
    (–26%). Higher solid precipitation in spring (+18%) during the last two decades
    was increasingly important in mitigating glacier mass loss by providing mass to
    the glacier and protecting it from melting in the early monsoon. With bare ice
    exposed to warmer temperatures for longer periods, icemelt and catchment discharge
    have unsustainably intensified since the start of the 21st century, raising concerns
    for long-term water supply and hazard occurrence in the region.
article_number: e2109796119
article_processing_charge: No
article_type: original
author:
- first_name: Achille
  full_name: Jouberton, Achille
  last_name: Jouberton
- first_name: Thomas E.
  full_name: Shaw, Thomas E.
  last_name: Shaw
- first_name: Evan
  full_name: Miles, Evan
  last_name: Miles
- first_name: Michael
  full_name: McCarthy, Michael
  last_name: McCarthy
- first_name: Stefan
  full_name: Fugger, Stefan
  last_name: Fugger
- first_name: Shaoting
  full_name: Ren, Shaoting
  last_name: Ren
- first_name: Amaury
  full_name: Dehecq, Amaury
  last_name: Dehecq
- first_name: Wei
  full_name: Yang, Wei
  last_name: Yang
- first_name: Francesca
  full_name: Pellicciotti, Francesca
  id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
  last_name: Pellicciotti
citation:
  ama: Jouberton A, Shaw TE, Miles E, et al. Warming-induced monsoon precipitation
    phase change intensifies glacier mass loss in the southeastern Tibetan Plateau.
    <i>PNAS</i>. 2022;119(37). doi:<a href="https://doi.org/10.1073/pnas.2109796119">10.1073/pnas.2109796119</a>
  apa: Jouberton, A., Shaw, T. E., Miles, E., McCarthy, M., Fugger, S., Ren, S., …
    Pellicciotti, F. (2022). Warming-induced monsoon precipitation phase change intensifies
    glacier mass loss in the southeastern Tibetan Plateau. <i>PNAS</i>. Proceedings
    of the National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.2109796119">https://doi.org/10.1073/pnas.2109796119</a>
  chicago: Jouberton, Achille, Thomas E. Shaw, Evan Miles, Michael McCarthy, Stefan
    Fugger, Shaoting Ren, Amaury Dehecq, Wei Yang, and Francesca Pellicciotti. “Warming-Induced
    Monsoon Precipitation Phase Change Intensifies Glacier Mass Loss in the Southeastern
    Tibetan Plateau.” <i>PNAS</i>. Proceedings of the National Academy of Sciences,
    2022. <a href="https://doi.org/10.1073/pnas.2109796119">https://doi.org/10.1073/pnas.2109796119</a>.
  ieee: A. Jouberton <i>et al.</i>, “Warming-induced monsoon precipitation phase change
    intensifies glacier mass loss in the southeastern Tibetan Plateau,” <i>PNAS</i>,
    vol. 119, no. 37. Proceedings of the National Academy of Sciences, 2022.
  ista: Jouberton A, Shaw TE, Miles E, McCarthy M, Fugger S, Ren S, Dehecq A, Yang
    W, Pellicciotti F. 2022. Warming-induced monsoon precipitation phase change intensifies
    glacier mass loss in the southeastern Tibetan Plateau. PNAS. 119(37), e2109796119.
  mla: Jouberton, Achille, et al. “Warming-Induced Monsoon Precipitation Phase Change
    Intensifies Glacier Mass Loss in the Southeastern Tibetan Plateau.” <i>PNAS</i>,
    vol. 119, no. 37, e2109796119, Proceedings of the National Academy of Sciences,
    2022, doi:<a href="https://doi.org/10.1073/pnas.2109796119">10.1073/pnas.2109796119</a>.
  short: A. Jouberton, T.E. Shaw, E. Miles, M. McCarthy, S. Fugger, S. Ren, A. Dehecq,
    W. Yang, F. Pellicciotti, PNAS 119 (2022).
date_created: 2023-02-20T08:10:02Z
date_published: 2022-09-06T00:00:00Z
date_updated: 2023-02-28T13:50:37Z
day: '06'
doi: 10.1073/pnas.2109796119
extern: '1'
intvolume: '       119'
issue: '37'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '09'
oa_version: None
publication: PNAS
publication_identifier:
  eissn:
  - 1091-6490
  issn:
  - 0027-8424
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Warming-induced monsoon precipitation phase change intensifies glacier mass
  loss in the southeastern Tibetan Plateau
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 119
year: '2022'
...
---
_id: '10809'
abstract:
- lang: eng
  text: Thermoelectric materials are engines that convert heat into an electrical
    current. Intuitively, the efficiency of this process depends on how many electrons
    (charge carriers) can move and how easily they do so, how much energy those moving
    electrons transport, and how easily the temperature gradient is maintained. In
    terms of material properties, an excellent thermoelectric material requires a
    high electrical conductivity σ, a high Seebeck coefficient S (a measure of the
    induced thermoelectric voltage as a function of temperature gradient), and a low
    thermal conductivity κ. The challenge is that these three properties are strongly
    interrelated in a conflicting manner (1). On page 722 of this issue, Roychowdhury
    et al. (2) have found a way to partially break these ties in silver antimony telluride
    (AgSbTe2) with the addition of cadmium (Cd) cations, which increase the ordering
    in this inherently disordered thermoelectric material.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Yu
  full_name: Liu, Yu
  id: 2A70014E-F248-11E8-B48F-1D18A9856A87
  last_name: Liu
  orcid: 0000-0001-7313-6740
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
citation:
  ama: Liu Y, Ibáñez M. Tidying up the mess. <i>Science</i>. 2021;371(6530):678-679.
    doi:<a href="https://doi.org/10.1126/science.abg0886">10.1126/science.abg0886</a>
  apa: Liu, Y., &#38; Ibáñez, M. (2021). Tidying up the mess. <i>Science</i>. American
    Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.abg0886">https://doi.org/10.1126/science.abg0886</a>
  chicago: Liu, Yu, and Maria Ibáñez. “Tidying up the Mess.” <i>Science</i>. American
    Association for the Advancement of Science, 2021. <a href="https://doi.org/10.1126/science.abg0886">https://doi.org/10.1126/science.abg0886</a>.
  ieee: Y. Liu and M. Ibáñez, “Tidying up the mess,” <i>Science</i>, vol. 371, no.
    6530. American Association for the Advancement of Science, pp. 678–679, 2021.
  ista: Liu Y, Ibáñez M. 2021. Tidying up the mess. Science. 371(6530), 678–679.
  mla: Liu, Yu, and Maria Ibáñez. “Tidying up the Mess.” <i>Science</i>, vol. 371,
    no. 6530, American Association for the Advancement of Science, 2021, pp. 678–79,
    doi:<a href="https://doi.org/10.1126/science.abg0886">10.1126/science.abg0886</a>.
  short: Y. Liu, M. Ibáñez, Science 371 (2021) 678–679.
date_created: 2022-03-03T09:51:48Z
date_published: 2021-02-12T00:00:00Z
date_updated: 2023-08-17T07:00:35Z
day: '12'
department:
- _id: MaIb
doi: 10.1126/science.abg0886
external_id:
  isi:
  - '000617551600027'
  pmid:
  - '33574201'
intvolume: '       371'
isi: 1
issue: '6530'
keyword:
- multidisciplinary
language:
- iso: eng
month: '02'
oa_version: None
page: 678-679
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tidying up the mess
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 371
year: '2021'
...
---
_id: '13995'
abstract:
- lang: eng
  text: Shape resonances play a central role in many areas of science, but the real-time
    measurement of the associated many-body dynamics remains challenging. Here, we
    present measurements of recoil frame angle-resolved photoionization delays in
    the vicinity of shape resonances of CF4. This technique provides insights into
    the spatiotemporal photoionization dynamics of molecular shape resonances. We
    find delays of up to ∼600 as in the ionization out of the highest occupied molecular
    orbital (HOMO) with a strong dependence on the emission direction and a pronounced
    asymmetry along the dissociation axis. Comparison with quantum-scattering calculations
    traces the asymmetries to the interference of a small subset of partial waves
    at low kinetic energies and, additionally, to the interference of two overlapping
    shape resonances in the HOMO-1 channel. Our experimental and theoretical results
    establish a broadly applicable approach to space- and time-resolved photoionization
    dynamics in the molecular frame.
article_number: abj8121
article_processing_charge: No
article_type: original
author:
- first_name: Saijoscha
  full_name: Heck, Saijoscha
  last_name: Heck
- first_name: Denitsa Rangelova
  full_name: Baykusheva, Denitsa Rangelova
  id: 71b4d059-2a03-11ee-914d-dfa3beed6530
  last_name: Baykusheva
- first_name: Meng
  full_name: Han, Meng
  last_name: Han
- first_name: Jia-Bao
  full_name: Ji, Jia-Bao
  last_name: Ji
- first_name: Conaill
  full_name: Perry, Conaill
  last_name: Perry
- first_name: Xiaochun
  full_name: Gong, Xiaochun
  last_name: Gong
- first_name: Hans Jakob
  full_name: Wörner, Hans Jakob
  last_name: Wörner
citation:
  ama: Heck S, Baykusheva DR, Han M, et al. Attosecond interferometry of shape resonances
    in the recoil frame of CF4. <i>Science Advances</i>. 2021;7(49). doi:<a href="https://doi.org/10.1126/sciadv.abj8121">10.1126/sciadv.abj8121</a>
  apa: Heck, S., Baykusheva, D. R., Han, M., Ji, J.-B., Perry, C., Gong, X., &#38;
    Wörner, H. J. (2021). Attosecond interferometry of shape resonances in the recoil
    frame of CF4. <i>Science Advances</i>. American Association for the Advancement
    of Science. <a href="https://doi.org/10.1126/sciadv.abj8121">https://doi.org/10.1126/sciadv.abj8121</a>
  chicago: Heck, Saijoscha, Denitsa Rangelova Baykusheva, Meng Han, Jia-Bao Ji, Conaill
    Perry, Xiaochun Gong, and Hans Jakob Wörner. “Attosecond Interferometry of Shape
    Resonances in the Recoil Frame of CF4.” <i>Science Advances</i>. American Association
    for the Advancement of Science, 2021. <a href="https://doi.org/10.1126/sciadv.abj8121">https://doi.org/10.1126/sciadv.abj8121</a>.
  ieee: S. Heck <i>et al.</i>, “Attosecond interferometry of shape resonances in the
    recoil frame of CF4,” <i>Science Advances</i>, vol. 7, no. 49. American Association
    for the Advancement of Science, 2021.
  ista: Heck S, Baykusheva DR, Han M, Ji J-B, Perry C, Gong X, Wörner HJ. 2021. Attosecond
    interferometry of shape resonances in the recoil frame of CF4. Science Advances.
    7(49), abj8121.
  mla: Heck, Saijoscha, et al. “Attosecond Interferometry of Shape Resonances in the
    Recoil Frame of CF4.” <i>Science Advances</i>, vol. 7, no. 49, abj8121, American
    Association for the Advancement of Science, 2021, doi:<a href="https://doi.org/10.1126/sciadv.abj8121">10.1126/sciadv.abj8121</a>.
  short: S. Heck, D.R. Baykusheva, M. Han, J.-B. Ji, C. Perry, X. Gong, H.J. Wörner,
    Science Advances 7 (2021).
date_created: 2023-08-09T13:09:02Z
date_published: 2021-12-03T00:00:00Z
date_updated: 2023-08-22T07:30:25Z
day: '03'
doi: 10.1126/sciadv.abj8121
extern: '1'
external_id:
  pmid:
  - '34860540'
intvolume: '         7'
issue: '49'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1126/sciadv.abj8121
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
publication: Science Advances
publication_identifier:
  eissn:
  - 2375-2548
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Attosecond interferometry of shape resonances in the recoil frame of CF4
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2021'
...
