---
_id: '11585'
abstract:
- lang: eng
  text: "Observations show that star-forming galaxies reside on a tight three-dimensional
    plane between mass, gas-phase metallicity and star formation rate (SFR), which
    can be explained by the interplay between metal-poor gas inflows, SFR and outflows.
    However, different metals are released on different time-scales, which may affect
    the slope of this relation. Here, we use central, star-forming galaxies with Mstar
    = 109.0−10.5 M\f from the EAGLE hydrodynamical simulation to examine three-dimensional
    relations between mass, SFR and chemical enrichment using absolute and relative
    C, N, O and Fe abundances. We show that the scatter is smaller when gas-phase
    α-enhancement is used rather than metallicity. A similar plane also exists for
    stellar α-enhancement, implying that present-day specific SFRs are correlated
    with long time-scale star formation histories. Between z = 0 and 1, the α-enhancement
    plane is even more insensitive to redshift than the plane using metallicity. However,
    it evolves at z > 1 due to lagging iron yields. At fixed mass, galaxies with higher
    SFRs have star formation histories shifted toward late times, are more α-enhanced
    and this α-enhancement increases with redshift as observed. These findings suggest
    that relations between physical properties inferred from observations may be affected
    by systematic variations in α-enhancements."
acknowledgement: We thank the anonymous referee for their constructive comments. JM
  acknowledges the support of a Huygens PhD fellowship from Leiden University. We
  thank Jarle Brinchmann, Rob Crain and David Sobral for discussions. We acknowledge
  the use of the Topcat software (Taylor 2013) for assisting in rapid exploration
  of multi-dimensional datasets and the use of Python and its numpy, matplotlib and
  pandas packages.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
citation:
  ama: Matthee JJ. Differences in galaxy colours are not just about the mass. <i>Nature
    Astronomy</i>. 2021;5:984-985. doi:<a href="https://doi.org/10.1038/s41550-021-01415-y">10.1038/s41550-021-01415-y</a>
  apa: Matthee, J. J. (2021). Differences in galaxy colours are not just about the
    mass. <i>Nature Astronomy</i>. Springer Nature. <a href="https://doi.org/10.1038/s41550-021-01415-y">https://doi.org/10.1038/s41550-021-01415-y</a>
  chicago: Matthee, Jorryt J. “Differences in Galaxy Colours Are Not Just about the
    Mass.” <i>Nature Astronomy</i>. Springer Nature, 2021. <a href="https://doi.org/10.1038/s41550-021-01415-y">https://doi.org/10.1038/s41550-021-01415-y</a>.
  ieee: J. J. Matthee, “Differences in galaxy colours are not just about the mass,”
    <i>Nature Astronomy</i>, vol. 5. Springer Nature, pp. 984–985, 2021.
  ista: Matthee JJ. 2021. Differences in galaxy colours are not just about the mass.
    Nature Astronomy. 5, 984–985.
  mla: Matthee, Jorryt J. “Differences in Galaxy Colours Are Not Just about the Mass.”
    <i>Nature Astronomy</i>, vol. 5, Springer Nature, 2021, pp. 984–85, doi:<a href="https://doi.org/10.1038/s41550-021-01415-y">10.1038/s41550-021-01415-y</a>.
  short: J.J. Matthee, Nature Astronomy 5 (2021) 984–985.
date_created: 2022-07-14T13:13:39Z
date_published: 2021-07-05T00:00:00Z
date_updated: 2022-08-19T08:37:58Z
day: '05'
doi: 10.1038/s41550-021-01415-y
extern: '1'
external_id:
  arxiv:
  - '1802.06786'
intvolume: '         5'
keyword:
- Astronomy and Astrophysics
- galaxies
- formation - galaxies
- evolution - galaxies
- star formation - galaxies
- abundances
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1802.06786
month: '07'
oa: 1
oa_version: Preprint
page: 984-985
publication: Nature Astronomy
publication_identifier:
  eissn:
  - 2397-3366
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Differences in galaxy colours are not just about the mass
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2021'
...
---
_id: '11605'
abstract:
- lang: eng
  text: "Context. The discovery of moderate differential rotation between the core
    and the envelope of evolved solar-like stars could be the signature of a strong
    magnetic field trapped inside the radiative interior. The population of intermediate-mass
    red giants presenting surprisingly low-amplitude mixed modes (i.e. oscillation
    modes that behave as acoustic modes in their external envelope and as gravity
    modes in their core) could also arise from the effect of an internal magnetic
    field. Indeed, stars more massive than about 1.1 solar masses are known to develop
    a convective core during their main sequence. The field generated by the dynamo
    triggered by this convection could be the progenitor of a strong fossil magnetic
    field trapped inside the core of the star for the remainder of its evolution.\r\n\r\nAims.
    Observations of mixed modes can constitute an excellent probe of the deepest layers
    of evolved solar-like stars, and magnetic fields in those regions can impact their
    propagation. The magnetic perturbation on mixed modes may therefore be visible
    in asteroseismic data. To unravel which constraints can be obtained from observations,
    we theoretically investigate the effects of a plausible mixed axisymmetric magnetic
    field with various amplitudes on the mixed-mode frequencies of evolved solar-like
    stars.\r\n\r\nMethods. First-order frequency perturbations due to an axisymmetric
    magnetic field were computed for dipolar and quadrupolar mixed modes. These computations
    were carried out for a range of stellar ages, masses, and metallicities.\r\n\r\nConclusions.
    We show that typical fossil-field strengths of 0.1 − 1 MG, consistent with the
    presence of a dynamo in the convective core during the main sequence, provoke
    significant asymmetries on mixed-mode frequency multiplets during the red giant
    branch. We provide constraints and methods for the detectability of such magnetic
    signatures. We show that these signatures may be detectable in asteroseismic data
    for field amplitudes small enough for the amplitude of the modes not to be affected
    by the conversion of gravity into Alfvén waves inside the magnetised interior.
    Finally, we infer an upper limit for the strength of the field and the associated
    lower limit for the timescale of its action in order to redistribute angular momentum
    in stellar interiors."
article_number: A53
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Lisa Annabelle
  full_name: Bugnet, Lisa Annabelle
  id: d9edb345-f866-11ec-9b37-d119b5234501
  last_name: Bugnet
  orcid: 0000-0003-0142-4000
- first_name: V.
  full_name: Prat, V.
  last_name: Prat
- first_name: S.
  full_name: Mathis, S.
  last_name: Mathis
- first_name: A.
  full_name: Astoul, A.
  last_name: Astoul
- first_name: K.
  full_name: Augustson, K.
  last_name: Augustson
- first_name: R. A.
  full_name: García, R. A.
  last_name: García
- first_name: S.
  full_name: Mathur, S.
  last_name: Mathur
- first_name: L.
  full_name: Amard, L.
  last_name: Amard
- first_name: C.
  full_name: Neiner, C.
  last_name: Neiner
citation:
  ama: 'Bugnet LA, Prat V, Mathis S, et al. Magnetic signatures on mixed-mode frequencies:
    I. An axisymmetric fossil field inside the core of red giants. <i>Astronomy &#38;
    Astrophysics</i>. 2021;650. doi:<a href="https://doi.org/10.1051/0004-6361/202039159">10.1051/0004-6361/202039159</a>'
  apa: 'Bugnet, L. A., Prat, V., Mathis, S., Astoul, A., Augustson, K., García, R.
    A., … Neiner, C. (2021). Magnetic signatures on mixed-mode frequencies: I. An
    axisymmetric fossil field inside the core of red giants. <i>Astronomy &#38; Astrophysics</i>.
    EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/202039159">https://doi.org/10.1051/0004-6361/202039159</a>'
  chicago: 'Bugnet, Lisa Annabelle, V. Prat, S. Mathis, A. Astoul, K. Augustson, R.
    A. García, S. Mathur, L. Amard, and C. Neiner. “Magnetic Signatures on Mixed-Mode
    Frequencies: I. An Axisymmetric Fossil Field inside the Core of Red Giants.” <i>Astronomy
    &#38; Astrophysics</i>. EDP Sciences, 2021. <a href="https://doi.org/10.1051/0004-6361/202039159">https://doi.org/10.1051/0004-6361/202039159</a>.'
  ieee: 'L. A. Bugnet <i>et al.</i>, “Magnetic signatures on mixed-mode frequencies:
    I. An axisymmetric fossil field inside the core of red giants,” <i>Astronomy &#38;
    Astrophysics</i>, vol. 650. EDP Sciences, 2021.'
  ista: 'Bugnet LA, Prat V, Mathis S, Astoul A, Augustson K, García RA, Mathur S,
    Amard L, Neiner C. 2021. Magnetic signatures on mixed-mode frequencies: I. An
    axisymmetric fossil field inside the core of red giants. Astronomy &#38; Astrophysics.
    650, A53.'
  mla: 'Bugnet, Lisa Annabelle, et al. “Magnetic Signatures on Mixed-Mode Frequencies:
    I. An Axisymmetric Fossil Field inside the Core of Red Giants.” <i>Astronomy &#38;
    Astrophysics</i>, vol. 650, A53, EDP Sciences, 2021, doi:<a href="https://doi.org/10.1051/0004-6361/202039159">10.1051/0004-6361/202039159</a>.'
  short: L.A. Bugnet, V. Prat, S. Mathis, A. Astoul, K. Augustson, R.A. García, S.
    Mathur, L. Amard, C. Neiner, Astronomy &#38; Astrophysics 650 (2021).
date_created: 2022-07-18T12:10:59Z
date_published: 2021-06-07T00:00:00Z
date_updated: 2022-08-19T10:06:33Z
day: '07'
doi: 10.1051/0004-6361/202039159
extern: '1'
external_id:
  arxiv:
  - '2102.01216'
intvolume: '       650'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- stars
- oscillations / stars
- magnetic field / stars
- interiors / stars
- evolution / stars
- rotation
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2102.01216
month: '06'
oa: 1
oa_version: Preprint
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Magnetic signatures on mixed-mode frequencies: I. An axisymmetric fossil field
  inside the core of red giants'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 650
year: '2021'
...
---
_id: '11609'
abstract:
- lang: eng
  text: "Context. Stellar interiors are the seat of efficient transport of angular
    momentum all along their evolution. In this context, understanding the dependence
    of the turbulent transport triggered by the instabilities of the vertical and
    horizontal shears of the differential rotation in stellar radiation zones as a
    function of their rotation, stratification, and thermal diffusivity is mandatory.
    Indeed, it constitutes one of the cornerstones of the rotational transport and
    mixing theory, which is implemented in stellar evolution codes to predict the
    rotational and chemical evolutions of stars.\r\n\r\nAims. We investigate horizontal
    shear instabilities in rotating stellar radiation zones by considering the full
    Coriolis acceleration with both the dimensionless horizontal Coriolis component
    f̃ and the vertical component f.\r\n\r\nMethods. We performed a linear stability
    analysis using linearized equations derived from the Navier-Stokes and heat transport
    equations in the rotating nontraditional f-plane. We considered a horizontal shear
    flow with a hyperbolic tangent profile as the base flow. The linear stability
    was analyzed numerically in wide ranges of parameters, and we performed an asymptotic
    analysis for large vertical wavenumbers using the Wentzel-Kramers-Brillouin-Jeffreys
    (WKBJ) approximation for nondiffusive and highly-diffusive fluids.\r\n\r\nResults.
    As in the traditional f-plane approximation, we identify two types of instabilities:
    the inflectional and inertial instabilities. The inflectional instability is destabilized
    as f̃ increases and its maximum growth rate increases significantly, while the
    thermal diffusivity stabilizes the inflectional instability similarly to the traditional
    case. The inertial instability is also strongly affected; for instance, the inertially
    unstable regime is also extended in the nondiffusive limit as 0 < f < 1 + f̃ 2/N2,
    where N is the dimensionless Brunt-Väisälä frequency. More strikingly, in the
    high thermal diffusivity limit, it is always inertially unstable at any colatitude
    θ except at the poles (i.e., 0° < θ <  180°). We also derived the critical Reynolds
    numbers for the inertial instability using the asymptotic dispersion relations
    obtained from the WKBJ analysis. Using the asymptotic and numerical results, we
    propose a prescription for the effective turbulent viscosities induced by the
    inertial and inflectional instabilities that can be possibly used in stellar evolution
    models. The characteristic time of this turbulence is short enough so that it
    is efficient to redistribute angular momentum and to mix chemicals in stellar
    radiation zones."
acknowledgement: The authors acknowledge support from the European Research Council
  through ERC grant SPIRE 647383 and from GOLF and PLATO CNES grants at the Department
  of Astrophysics at CEA Paris-Saclay. We thank the referee, Prof. A. J. Barker, for
  his constructive comments that allow us to improve the article.
article_number: A64
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: J.
  full_name: Park, J.
  last_name: Park
- first_name: V.
  full_name: Prat, V.
  last_name: Prat
- first_name: S.
  full_name: Mathis, S.
  last_name: Mathis
- first_name: Lisa Annabelle
  full_name: Bugnet, Lisa Annabelle
  id: d9edb345-f866-11ec-9b37-d119b5234501
  last_name: Bugnet
  orcid: 0000-0003-0142-4000
citation:
  ama: 'Park J, Prat V, Mathis S, Bugnet LA. Horizontal shear instabilities in rotating
    stellar radiation zones: II. Effects of the full Coriolis acceleration. <i>Astronomy
    &#38; Astrophysics</i>. 2021;646. doi:<a href="https://doi.org/10.1051/0004-6361/202038654">10.1051/0004-6361/202038654</a>'
  apa: 'Park, J., Prat, V., Mathis, S., &#38; Bugnet, L. A. (2021). Horizontal shear
    instabilities in rotating stellar radiation zones: II. Effects of the full Coriolis
    acceleration. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/202038654">https://doi.org/10.1051/0004-6361/202038654</a>'
  chicago: 'Park, J., V. Prat, S. Mathis, and Lisa Annabelle Bugnet. “Horizontal Shear
    Instabilities in Rotating Stellar Radiation Zones: II. Effects of the Full Coriolis
    Acceleration.” <i>Astronomy &#38; Astrophysics</i>. EDP Sciences, 2021. <a href="https://doi.org/10.1051/0004-6361/202038654">https://doi.org/10.1051/0004-6361/202038654</a>.'
  ieee: 'J. Park, V. Prat, S. Mathis, and L. A. Bugnet, “Horizontal shear instabilities
    in rotating stellar radiation zones: II. Effects of the full Coriolis acceleration,”
    <i>Astronomy &#38; Astrophysics</i>, vol. 646. EDP Sciences, 2021.'
  ista: 'Park J, Prat V, Mathis S, Bugnet LA. 2021. Horizontal shear instabilities
    in rotating stellar radiation zones: II. Effects of the full Coriolis acceleration.
    Astronomy &#38; Astrophysics. 646, A64.'
  mla: 'Park, J., et al. “Horizontal Shear Instabilities in Rotating Stellar Radiation
    Zones: II. Effects of the Full Coriolis Acceleration.” <i>Astronomy &#38; Astrophysics</i>,
    vol. 646, A64, EDP Sciences, 2021, doi:<a href="https://doi.org/10.1051/0004-6361/202038654">10.1051/0004-6361/202038654</a>.'
  short: J. Park, V. Prat, S. Mathis, L.A. Bugnet, Astronomy &#38; Astrophysics 646
    (2021).
date_created: 2022-07-18T13:24:32Z
date_published: 2021-02-08T00:00:00Z
date_updated: 2022-08-19T10:18:03Z
day: '08'
doi: 10.1051/0004-6361/202038654
extern: '1'
external_id:
  arxiv:
  - '2006.10660'
intvolume: '       646'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- hydrodynamics / turbulence / stars
- rotation / stars
- evolution
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2006.10660
month: '02'
oa: 1
oa_version: Preprint
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Horizontal shear instabilities in rotating stellar radiation zones: II. Effects
  of the full Coriolis acceleration'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 646
year: '2021'
...
---
_id: '9252'
abstract:
- lang: eng
  text: 'This paper analyses the conditions for local adaptation in a metapopulation
    with infinitely many islands under a model of hard selection, where population
    size depends on local fitness. Each island belongs to one of two distinct ecological
    niches or habitats. Fitness is influenced by an additive trait which is under
    habitat‐dependent directional selection. Our analysis is based on the diffusion
    approximation and accounts for both genetic drift and demographic stochasticity.
    By neglecting linkage disequilibria, it yields the joint distribution of allele
    frequencies and population size on each island. We find that under hard selection,
    the conditions for local adaptation in a rare habitat are more restrictive for
    more polygenic traits: even moderate migration load per locus at very many loci
    is sufficient for population sizes to decline. This further reduces the efficacy
    of selection at individual loci due to increased drift and because smaller populations
    are more prone to swamping due to migration, causing a positive feedback between
    increasing maladaptation and declining population sizes. Our analysis also highlights
    the importance of demographic stochasticity, which exacerbates the decline in
    numbers of maladapted populations, leading to population collapse in the rare
    habitat at significantly lower migration than predicted by deterministic arguments.'
acknowledgement: We thank the reviewers for their helpful comments, and also our colleagues,
  for illuminating discussions over the long gestation of this paper.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Eniko
  full_name: Szep, Eniko
  id: 485BB5A4-F248-11E8-B48F-1D18A9856A87
  last_name: Szep
- first_name: Himani
  full_name: Sachdeva, Himani
  id: 42377A0A-F248-11E8-B48F-1D18A9856A87
  last_name: Sachdeva
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: 'Szep E, Sachdeva H, Barton NH. Polygenic local adaptation in metapopulations:
    A stochastic eco‐evolutionary model. <i>Evolution</i>. 2021;75(5):1030-1045. doi:<a
    href="https://doi.org/10.1111/evo.14210">10.1111/evo.14210</a>'
  apa: 'Szep, E., Sachdeva, H., &#38; Barton, N. H. (2021). Polygenic local adaptation
    in metapopulations: A stochastic eco‐evolutionary model. <i>Evolution</i>. Wiley.
    <a href="https://doi.org/10.1111/evo.14210">https://doi.org/10.1111/evo.14210</a>'
  chicago: 'Szep, Eniko, Himani Sachdeva, and Nicholas H Barton. “Polygenic Local
    Adaptation in Metapopulations: A Stochastic Eco‐evolutionary Model.” <i>Evolution</i>.
    Wiley, 2021. <a href="https://doi.org/10.1111/evo.14210">https://doi.org/10.1111/evo.14210</a>.'
  ieee: 'E. Szep, H. Sachdeva, and N. H. Barton, “Polygenic local adaptation in metapopulations:
    A stochastic eco‐evolutionary model,” <i>Evolution</i>, vol. 75, no. 5. Wiley,
    pp. 1030–1045, 2021.'
  ista: 'Szep E, Sachdeva H, Barton NH. 2021. Polygenic local adaptation in metapopulations:
    A stochastic eco‐evolutionary model. Evolution. 75(5), 1030–1045.'
  mla: 'Szep, Eniko, et al. “Polygenic Local Adaptation in Metapopulations: A Stochastic
    Eco‐evolutionary Model.” <i>Evolution</i>, vol. 75, no. 5, Wiley, 2021, pp. 1030–45,
    doi:<a href="https://doi.org/10.1111/evo.14210">10.1111/evo.14210</a>.'
  short: E. Szep, H. Sachdeva, N.H. Barton, Evolution 75 (2021) 1030–1045.
date_created: 2021-03-20T08:22:10Z
date_published: 2021-05-01T00:00:00Z
date_updated: 2023-09-05T15:44:06Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1111/evo.14210
external_id:
  isi:
  - '000636966300001'
file:
- access_level: open_access
  checksum: b90fb5767d623602046fed03725e16ca
  content_type: application/pdf
  creator: kschuh
  date_created: 2021-08-11T13:39:19Z
  date_updated: 2021-08-11T13:39:19Z
  file_id: '9886'
  file_name: 2021_Evolution_Szep.pdf
  file_size: 734102
  relation: main_file
  success: 1
file_date_updated: 2021-08-11T13:39:19Z
has_accepted_license: '1'
intvolume: '        75'
isi: 1
issue: '5'
keyword:
- Genetics
- Ecology
- Evolution
- Behavior and Systematics
- General Agricultural and Biological Sciences
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '05'
oa: 1
oa_version: Published Version
page: 1030-1045
publication: Evolution
publication_identifier:
  eissn:
  - 1558-5646
  issn:
  - 0014-3820
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
  record:
  - id: '13062'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: 'Polygenic local adaptation in metapopulations: A stochastic eco‐evolutionary
  model'
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 75
year: '2021'
...
---
_id: '9374'
abstract:
- lang: eng
  text: If there are no constraints on the process of speciation, then the number
    of species might be expected to match the number of available niches and this
    number might be indefinitely large. One possible constraint is the opportunity
    for allopatric divergence. In 1981, Felsenstein used a simple and elegant model
    to ask if there might also be genetic constraints. He showed that progress towards
    speciation could be described by the build‐up of linkage disequilibrium among
    divergently selected loci and between these loci and those contributing to other
    forms of reproductive isolation. Therefore, speciation is opposed by recombination,
    because it tends to break down linkage disequilibria. Felsenstein then introduced
    a crucial distinction between “two‐allele” models, which are subject to this effect,
    and “one‐allele” models, which are free from the recombination constraint. These
    fundamentally important insights have been the foundation for both empirical and
    theoretical studies of speciation ever since.
acknowledgement: RKB was funded by the Natural Environment Research Council (NE/P012272/1
  & NE/P001610/1), the European Research Council (693030 BARRIERS), and the Swedish
  Research Council (VR) (2018‐03695). MRS was funded by the National Science Foundation
  (Grant No. DEB1939290).
article_processing_charge: No
article_type: original
author:
- first_name: Roger K.
  full_name: Butlin, Roger K.
  last_name: Butlin
- first_name: Maria R.
  full_name: Servedio, Maria R.
  last_name: Servedio
- first_name: Carole M.
  full_name: Smadja, Carole M.
  last_name: Smadja
- first_name: Claudia
  full_name: Bank, Claudia
  last_name: Bank
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
- first_name: Samuel M.
  full_name: Flaxman, Samuel M.
  last_name: Flaxman
- first_name: Tatiana
  full_name: Giraud, Tatiana
  last_name: Giraud
- first_name: Robin
  full_name: Hopkins, Robin
  last_name: Hopkins
- first_name: Erica L.
  full_name: Larson, Erica L.
  last_name: Larson
- first_name: Martine E.
  full_name: Maan, Martine E.
  last_name: Maan
- first_name: Joana
  full_name: Meier, Joana
  last_name: Meier
- first_name: Richard
  full_name: Merrill, Richard
  last_name: Merrill
- first_name: Mohamed A. F.
  full_name: Noor, Mohamed A. F.
  last_name: Noor
- first_name: Daniel
  full_name: Ortiz‐Barrientos, Daniel
  last_name: Ortiz‐Barrientos
- first_name: Anna
  full_name: Qvarnström, Anna
  last_name: Qvarnström
citation:
  ama: Butlin RK, Servedio MR, Smadja CM, et al. Homage to Felsenstein 1981, or why
    are there so few/many species? <i>Evolution</i>. 2021;75(5):978-988. doi:<a href="https://doi.org/10.1111/evo.14235">10.1111/evo.14235</a>
  apa: Butlin, R. K., Servedio, M. R., Smadja, C. M., Bank, C., Barton, N. H., Flaxman,
    S. M., … Qvarnström, A. (2021). Homage to Felsenstein 1981, or why are there so
    few/many species? <i>Evolution</i>. Wiley. <a href="https://doi.org/10.1111/evo.14235">https://doi.org/10.1111/evo.14235</a>
  chicago: Butlin, Roger K., Maria R. Servedio, Carole M. Smadja, Claudia Bank, Nicholas
    H Barton, Samuel M. Flaxman, Tatiana Giraud, et al. “Homage to Felsenstein 1981,
    or Why Are There so Few/Many Species?” <i>Evolution</i>. Wiley, 2021. <a href="https://doi.org/10.1111/evo.14235">https://doi.org/10.1111/evo.14235</a>.
  ieee: R. K. Butlin <i>et al.</i>, “Homage to Felsenstein 1981, or why are there
    so few/many species?,” <i>Evolution</i>, vol. 75, no. 5. Wiley, pp. 978–988, 2021.
  ista: Butlin RK, Servedio MR, Smadja CM, Bank C, Barton NH, Flaxman SM, Giraud T,
    Hopkins R, Larson EL, Maan ME, Meier J, Merrill R, Noor MAF, Ortiz‐Barrientos
    D, Qvarnström A. 2021. Homage to Felsenstein 1981, or why are there so few/many
    species? Evolution. 75(5), 978–988.
  mla: Butlin, Roger K., et al. “Homage to Felsenstein 1981, or Why Are There so Few/Many
    Species?” <i>Evolution</i>, vol. 75, no. 5, Wiley, 2021, pp. 978–88, doi:<a href="https://doi.org/10.1111/evo.14235">10.1111/evo.14235</a>.
  short: R.K. Butlin, M.R. Servedio, C.M. Smadja, C. Bank, N.H. Barton, S.M. Flaxman,
    T. Giraud, R. Hopkins, E.L. Larson, M.E. Maan, J. Meier, R. Merrill, M.A.F. Noor,
    D. Ortiz‐Barrientos, A. Qvarnström, Evolution 75 (2021) 978–988.
date_created: 2021-05-06T04:34:47Z
date_published: 2021-04-19T00:00:00Z
date_updated: 2023-09-05T15:44:33Z
day: '19'
department:
- _id: NiBa
doi: 10.1111/evo.14235
external_id:
  isi:
  - '000647224000001'
intvolume: '        75'
isi: 1
issue: '5'
keyword:
- Genetics
- Ecology
- Evolution
- Behavior and Systematics
- General Agricultural and Biological Sciences
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
main_file_link:
- open_access: '1'
  url: https://onlinelibrary.wiley.com/doi/10.1111/evo.14235
month: '04'
oa: 1
oa_version: Published Version
page: 978-988
publication: Evolution
publication_identifier:
  eissn:
  - 1558-5646
  issn:
  - 0014-3820
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Homage to Felsenstein 1981, or why are there so few/many species?
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 75
year: '2021'
...
---
_id: '10568'
abstract:
- lang: eng
  text: Genetic adaptation and phenotypic plasticity facilitate the migration into
    new habitats and enable organisms to cope with a rapidly changing environment.
    In contrast to genetic adaptation that spans multiple generations as an evolutionary
    process, phenotypic plasticity allows acclimation within the life-time of an organism.
    Genetic adaptation and phenotypic plasticity are usually studied in isolation,
    however, only by including their interactive impact, we can understand acclimation
    and adaptation in nature. We aimed to explore the contribution of adaptation and
    plasticity in coping with an abiotic (salinity) and a biotic (Vibrio bacteria)
    stressor using six different populations of the broad-nosed pipefish Syngnathus
    typhle that originated from either high [14–17 Practical Salinity Unit (PSU)]
    or low (7–11 PSU) saline environments along the German coastline of the Baltic
    Sea. We exposed wild caught animals, to either high (15 PSU) or low (7 PSU) salinity,
    representing native and novel salinity conditions and allowed animals to mate.
    After male pregnancy, offspring was split and each half was exposed to one of
    the two salinities and infected with Vibrio alginolyticus bacteria that were evolved
    at either of the two salinities in a fully reciprocal design. We investigated
    life-history traits of fathers and expression of 47 target genes in mothers and
    offspring. Pregnant males originating from high salinity exposed to low salinity
    were highly susceptible to opportunistic fungi infections resulting in decreased
    offspring size and number. In contrast, no signs of fungal infection were identified
    in fathers originating from low saline conditions suggesting that genetic adaptation
    has the potential to overcome the challenges encountered at low salinity. Offspring
    from parents with low saline origin survived better at low salinity suggesting
    genetic adaptation to low salinity. In addition, gene expression analyses of juveniles
    indicated patterns of local adaptation, trans-generational plasticity and developmental
    plasticity. In conclusion, our study suggests that pipefish are locally adapted
    to the low salinity in their environment, however, they are retaining phenotypic
    plasticity, which allows them to also cope with ancestral salinity levels and
    prevailing pathogens.
acknowledgement: We are grateful for the help of Kristina Dauven, Andreas Ebner, Janina
  Röckner, and Paulina Urban for fish collection in the field and fish maintenance.
  Furthermore, we thank Fabian Wendt for setting up the aquaria system and Tatjana
  Liese, Paulina Urban, Jakob Gismann, and Thorsten Reusch for support with DNA extraction
  and analysis of pipefish population structure. The authors acknowledge support of
  Isabel Tanger, Agnes Piecyk, Jonas Müller, Grace Walls, Sebastian Albrecht, Julia
  Böge, and Julia Stefanschitz for their support in preparing cDNA and running of
  Fluidigm chips. A special thank goes to Diana Gill for general lab support, ordering
  materials and just being the good spirit of our molecular lab, to Till Bayer for
  bioinformatics support and to Melanie Heckwolf for fruitful discussion and feedback
  on the manuscript. HG is very grateful for inspirational office space with ocean
  view provided by Lisa Hentschel and family. This manuscript has been released as
  a pre-print at BIORXIV.
article_number: '626442'
article_processing_charge: No
article_type: original
author:
- first_name: Henry
  full_name: Goehlich, Henry
  last_name: Goehlich
- first_name: Linda
  full_name: Sartoris, Linda
  id: 2B9284CA-F248-11E8-B48F-1D18A9856A87
  last_name: Sartoris
- first_name: Kim-Sara
  full_name: Wagner, Kim-Sara
  last_name: Wagner
- first_name: Carolin C.
  full_name: Wendling, Carolin C.
  last_name: Wendling
- first_name: Olivia
  full_name: Roth, Olivia
  last_name: Roth
citation:
  ama: Goehlich H, Sartoris L, Wagner K-S, Wendling CC, Roth O. Pipefish locally adapted
    to low salinity in the Baltic Sea retain phenotypic plasticity to cope with ancestral
    salinity levels. <i>Frontiers in Ecology and Evolution</i>. 2021;9. doi:<a href="https://doi.org/10.3389/fevo.2021.626442">10.3389/fevo.2021.626442</a>
  apa: Goehlich, H., Sartoris, L., Wagner, K.-S., Wendling, C. C., &#38; Roth, O.
    (2021). Pipefish locally adapted to low salinity in the Baltic Sea retain phenotypic
    plasticity to cope with ancestral salinity levels. <i>Frontiers in Ecology and
    Evolution</i>. Frontiers Media. <a href="https://doi.org/10.3389/fevo.2021.626442">https://doi.org/10.3389/fevo.2021.626442</a>
  chicago: Goehlich, Henry, Linda Sartoris, Kim-Sara Wagner, Carolin C. Wendling,
    and Olivia Roth. “Pipefish Locally Adapted to Low Salinity in the Baltic Sea Retain
    Phenotypic Plasticity to Cope with Ancestral Salinity Levels.” <i>Frontiers in
    Ecology and Evolution</i>. Frontiers Media, 2021. <a href="https://doi.org/10.3389/fevo.2021.626442">https://doi.org/10.3389/fevo.2021.626442</a>.
  ieee: H. Goehlich, L. Sartoris, K.-S. Wagner, C. C. Wendling, and O. Roth, “Pipefish
    locally adapted to low salinity in the Baltic Sea retain phenotypic plasticity
    to cope with ancestral salinity levels,” <i>Frontiers in Ecology and Evolution</i>,
    vol. 9. Frontiers Media, 2021.
  ista: Goehlich H, Sartoris L, Wagner K-S, Wendling CC, Roth O. 2021. Pipefish locally
    adapted to low salinity in the Baltic Sea retain phenotypic plasticity to cope
    with ancestral salinity levels. Frontiers in Ecology and Evolution. 9, 626442.
  mla: Goehlich, Henry, et al. “Pipefish Locally Adapted to Low Salinity in the Baltic
    Sea Retain Phenotypic Plasticity to Cope with Ancestral Salinity Levels.” <i>Frontiers
    in Ecology and Evolution</i>, vol. 9, 626442, Frontiers Media, 2021, doi:<a href="https://doi.org/10.3389/fevo.2021.626442">10.3389/fevo.2021.626442</a>.
  short: H. Goehlich, L. Sartoris, K.-S. Wagner, C.C. Wendling, O. Roth, Frontiers
    in Ecology and Evolution 9 (2021).
date_created: 2021-12-20T07:53:19Z
date_published: 2021-03-25T00:00:00Z
date_updated: 2023-08-17T06:27:22Z
day: '25'
ddc:
- '597'
department:
- _id: SyCr
doi: 10.3389/fevo.2021.626442
external_id:
  isi:
  - '000637736300001'
file:
- access_level: open_access
  checksum: 8d6e2b767bb0240a9b5a3a3555be51fd
  content_type: application/pdf
  creator: alisjak
  date_created: 2021-12-20T10:44:20Z
  date_updated: 2021-12-20T10:44:20Z
  file_id: '10572'
  file_name: 2021_Frontiers_Goehlich.pdf
  file_size: 3175085
  relation: main_file
  success: 1
file_date_updated: 2021-12-20T10:44:20Z
has_accepted_license: '1'
intvolume: '         9'
isi: 1
keyword:
- ecology
- evolution
- behavior and systematics
- trans-generational plasticity
- genetic adaptation
- local adaptation
- phenotypic plasticity
- Baltic Sea
- climate change
- salinity
- syngnathids
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Frontiers in Ecology and Evolution
publication_identifier:
  issn:
  - 2296-701X
publication_status: published
publisher: Frontiers Media
quality_controlled: '1'
scopus_import: '1'
status: public
title: Pipefish locally adapted to low salinity in the Baltic Sea retain phenotypic
  plasticity to cope with ancestral salinity levels
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 9
year: '2021'
...
---
_id: '11501'
abstract:
- lang: eng
  text: We investigated the ultraviolet (UV) spectral properties of faint Lyman-α
    emitters (LAEs) in the redshift range 2.9 ≤ z ≤ 4.6, and we provide material to
    prepare future observations of the faint Universe. We used data from the MUSE
    Hubble Ultra Deep Survey to construct mean rest-frame spectra of continuum-faint
    (median MUV of −18 and down to MUV of −16), low stellar mass (median value of
    108.4 M⊙ and down to 107 M⊙) LAEs at redshift z ≳ 3. We computed various averaged
    spectra of LAEs, subsampled on the basis of their observational (e.g., Lyα strength,
    UV magnitude and spectral slope) and physical (e.g., stellar mass and star-formation
    rate) properties. We searched for UV spectral features other than Lyα, such as
    higher ionization nebular emission lines and absorption features. We successfully
    observed the O III]λ1666 and [C III]λ1907+C III]λ1909 collisionally excited emission
    lines and the He IIλ1640 recombination feature, as well as the resonant C IVλλ1548,1551
    doublet either in emission or P-Cygni. We compared the observed spectral properties
    of the different mean spectra and find the emission lines to vary with the observational
    and physical properties of the LAEs. In particular, the mean spectra of LAEs with
    larger Lyα equivalent widths, fainter UV magnitudes, bluer UV spectral slopes,
    and lower stellar masses show the strongest nebular emission. The line ratios
    of these lines are similar to those measured in the spectra of local metal-poor
    galaxies, while their equivalent widths are weaker compared to the handful of
    extreme values detected in individual spectra of z >  2 galaxies. This suggests
    that weak UV features are likely ubiquitous in high z, low-mass, and faint LAEs.
    We publicly released the stacked spectra, as they can serve as empirical templates
    for the design of future observations, such as those with the James Webb Space
    Telescope and the Extremely Large Telescope.
acknowledgement: 'We thank Margherita Talia, Stéphane Charlot, Adele Plat and Alba
  Vidal-García for helpful discussions. This work is supported by the ERC advanced
  grant 339659-MUSICOS (R. Bacon). AF acknowledges the support from grant PRIN MIUR
  2017 20173ML3WW. MVM and JP would like to thank the Leiden/ESA Astrophysics Program
  for Summer Students (LEAPS) for funding at the outset of this project. FL, HK, and
  AV acknowledge support from the ERC starting grant ERC-757258-TRIPLE. TH was supported
  by Leading Initiative for Excellent Young Researchers, MEXT, Japan. JB acknowledges
  support by FCT/MCTES through national funds by the grant UID/FIS/04434/2019, UIDB/04434/2020
  and UIDP/04434/2020 and through the Investigador FCT Contract No. IF/01654/2014/CP1215/CT0003.
  HI acknowledges support from JSPS KAKENHI Grant Number JP19K23462. We would also
  like to thank the organizers and participants of the Leiden Lorentz Center workshop:
  Revolutionary Spectroscopy of Today as a Springboard to Webb. This work made use
  of several open source python packages: NUMPY (van der Walt et al. 2011), MATPLOTLIB
  (Hunter 2007), ASTROPY (Astropy Collaboration 2013) and MPDAF (MUSE Python Data
  Analysis Framework, Piqueras et al. 2019).'
article_number: A118
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Anna
  full_name: Feltre, Anna
  last_name: Feltre
- first_name: Michael V.
  full_name: Maseda, Michael V.
  last_name: Maseda
- first_name: Roland
  full_name: Bacon, Roland
  last_name: Bacon
- first_name: Jayadev
  full_name: Pradeep, Jayadev
  last_name: Pradeep
- first_name: Floriane
  full_name: Leclercq, Floriane
  last_name: Leclercq
- first_name: Haruka
  full_name: Kusakabe, Haruka
  last_name: Kusakabe
- first_name: Lutz
  full_name: Wisotzki, Lutz
  last_name: Wisotzki
- first_name: Takuya
  full_name: Hashimoto, Takuya
  last_name: Hashimoto
- first_name: Kasper B.
  full_name: Schmidt, Kasper B.
  last_name: Schmidt
- first_name: Jeremy
  full_name: Blaizot, Jeremy
  last_name: Blaizot
- first_name: Jarle
  full_name: Brinchmann, Jarle
  last_name: Brinchmann
- first_name: Leindert
  full_name: Boogaard, Leindert
  last_name: Boogaard
- first_name: Sebastiano
  full_name: Cantalupo, Sebastiano
  last_name: Cantalupo
- first_name: David
  full_name: Carton, David
  last_name: Carton
- first_name: Hanae
  full_name: Inami, Hanae
  last_name: Inami
- first_name: Wolfram
  full_name: Kollatschny, Wolfram
  last_name: Kollatschny
- first_name: Raffaella A.
  full_name: Marino, Raffaella A.
  last_name: Marino
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Themiya
  full_name: Nanayakkara, Themiya
  last_name: Nanayakkara
- first_name: Johan
  full_name: Richard, Johan
  last_name: Richard
- first_name: Joop
  full_name: Schaye, Joop
  last_name: Schaye
- first_name: Laurence
  full_name: Tresse, Laurence
  last_name: Tresse
- first_name: Tanya
  full_name: Urrutia, Tanya
  last_name: Urrutia
- first_name: Anne
  full_name: Verhamme, Anne
  last_name: Verhamme
- first_name: Peter M.
  full_name: Weilbacher, Peter M.
  last_name: Weilbacher
citation:
  ama: 'Feltre A, Maseda MV, Bacon R, et al. The MUSE Hubble Ultra Deep Field Survey:
    XV. The mean rest-UV spectra of Lyα emitters at z &#62; 3. <i>Astronomy &#38;
    Astrophysics</i>. 2020;641. doi:<a href="https://doi.org/10.1051/0004-6361/202038133">10.1051/0004-6361/202038133</a>'
  apa: 'Feltre, A., Maseda, M. V., Bacon, R., Pradeep, J., Leclercq, F., Kusakabe,
    H., … Weilbacher, P. M. (2020). The MUSE Hubble Ultra Deep Field Survey: XV. The
    mean rest-UV spectra of Lyα emitters at z &#62; 3. <i>Astronomy &#38; Astrophysics</i>.
    EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/202038133">https://doi.org/10.1051/0004-6361/202038133</a>'
  chicago: 'Feltre, Anna, Michael V. Maseda, Roland Bacon, Jayadev Pradeep, Floriane
    Leclercq, Haruka Kusakabe, Lutz Wisotzki, et al. “The MUSE Hubble Ultra Deep Field
    Survey: XV. The Mean Rest-UV Spectra of Lyα Emitters at z &#62; 3.” <i>Astronomy
    &#38; Astrophysics</i>. EDP Sciences, 2020. <a href="https://doi.org/10.1051/0004-6361/202038133">https://doi.org/10.1051/0004-6361/202038133</a>.'
  ieee: 'A. Feltre <i>et al.</i>, “The MUSE Hubble Ultra Deep Field Survey: XV. The
    mean rest-UV spectra of Lyα emitters at z &#62; 3,” <i>Astronomy &#38; Astrophysics</i>,
    vol. 641. EDP Sciences, 2020.'
  ista: 'Feltre A, Maseda MV, Bacon R, Pradeep J, Leclercq F, Kusakabe H, Wisotzki
    L, Hashimoto T, Schmidt KB, Blaizot J, Brinchmann J, Boogaard L, Cantalupo S,
    Carton D, Inami H, Kollatschny W, Marino RA, Matthee JJ, Nanayakkara T, Richard
    J, Schaye J, Tresse L, Urrutia T, Verhamme A, Weilbacher PM. 2020. The MUSE Hubble
    Ultra Deep Field Survey: XV. The mean rest-UV spectra of Lyα emitters at z &#62;
    3. Astronomy &#38; Astrophysics. 641, A118.'
  mla: 'Feltre, Anna, et al. “The MUSE Hubble Ultra Deep Field Survey: XV. The Mean
    Rest-UV Spectra of Lyα Emitters at z &#62; 3.” <i>Astronomy &#38; Astrophysics</i>,
    vol. 641, A118, EDP Sciences, 2020, doi:<a href="https://doi.org/10.1051/0004-6361/202038133">10.1051/0004-6361/202038133</a>.'
  short: A. Feltre, M.V. Maseda, R. Bacon, J. Pradeep, F. Leclercq, H. Kusakabe, L.
    Wisotzki, T. Hashimoto, K.B. Schmidt, J. Blaizot, J. Brinchmann, L. Boogaard,
    S. Cantalupo, D. Carton, H. Inami, W. Kollatschny, R.A. Marino, J.J. Matthee,
    T. Nanayakkara, J. Richard, J. Schaye, L. Tresse, T. Urrutia, A. Verhamme, P.M.
    Weilbacher, Astronomy &#38; Astrophysics 641 (2020).
date_created: 2022-07-06T09:38:16Z
date_published: 2020-09-18T00:00:00Z
date_updated: 2022-07-19T09:35:43Z
day: '18'
doi: 10.1051/0004-6361/202038133
extern: '1'
external_id:
  arxiv:
  - '2007.01878'
intvolume: '       641'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- 'galaxies: evolution / galaxies: high-redshift / ISM: lines and bands / ultraviolet:
  ISM / ultraviolet: galaxies'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2007.01878
month: '09'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The MUSE Hubble Ultra Deep Field Survey: XV. The mean rest-UV spectra of Lyα
  emitters at z > 3'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 641
year: '2020'
...
---
_id: '11503'
abstract:
- lang: eng
  text: "Context. The Lyα emitter (LAE) fraction, XLAE, is a potentially powerful
    probe of the evolution of the intergalactic neutral hydrogen gas fraction. However,
    uncertainties in the measurement of XLAE are still under debate.\r\nAims. Thanks
    to deep data obtained with the integral field spectrograph Multi Unit Spectroscopic
    Explorer (MUSE), we can measure the evolution of the LAE fraction homogeneously
    over a wide redshift range of z ≈ 3–6 for UV-faint galaxies (down to UV magnitudes
    of M1500 ≈ −17.75). This is a significantly fainter range than in former studies
    (M1500 ≤ −18.75) and it allows us to probe the bulk of the population of high-redshift
    star-forming galaxies.\r\nMethods. We constructed a UV-complete photometric-redshift
    sample following UV luminosity functions and measured the Lyα emission with MUSE
    using the latest (second) data release from the MUSE Hubble Ultra Deep Field Survey.\r\nResults.
    We derived the redshift evolution of XLAE for M1500 ∈ [ − 21.75; −17.75] for the
    first time with a equivalent width range EW(Lyα) ≥ 65 Å and found low values of
    XLAE ≲ 30% at z ≲ 6. The best-fit linear relation is XLAE = 0.07+0.06−0.03z −
    0.22+0.12−0.24. For M1500 ∈ [ − 20.25; −18.75] and EW(Lyα) ≥ 25 Å, our XLAE values
    are consistent with those in the literature within 1σ at z ≲ 5, but our median
    values are systematically lower than reported values over the whole redshift range.
    In addition, we do not find a significant dependence of XLAE on M1500 for EW(Lyα)
    ≥ 50 Å at z ≈ 3–4, in contrast with previous work. The differences in XLAE mainly
    arise from selection biases for Lyman Break Galaxies (LBGs) in the literature:
    UV-faint LBGs are more easily selected if they have strong Lyα emission, hence
    XLAE is biased towards higher values when those samples are used.\r\nConclusions.
    Our results suggest either a lower increase of XLAE towards z ≈ 6 than previously
    suggested, or even a turnover of XLAE at z ≈ 5.5, which may be the signature of
    a late or patchy reionization process. We compared our results with predictions
    from a cosmological galaxy evolution model. We find that a model with a bursty
    star formation (SF) can reproduce our observed LAE fractions much better than
    models where SF is a smooth function of time."
acknowledgement: We thank the anonymous referee for constructive comments and suggestions.
  We would like to express our gratitude to Stephane De Barros and Pablo Arrabal Haro
  for kindly providing their data plotted in Figs. 1, 2, and 8. We are grateful to
  Kazuhiro Shimasaku, Masami Ouchi, Rieko Momose, Daniel Schaerer, Hidenobu Yajima,
  Taku Okamura, Makoto Ando, and Hinako Goto for giving insightful comments and suggestions.
  This work is based on observations taken by VLT, which is operated by European Southern
  Observatory. This research made use of Astropy (http://www.astropy.org), which is
  a community-developed core Python package for Astronomy (Astropy Collaboration 2013,
  2018), MARZ, MPDAF, and matplotlib (Hunter 2007). H.K. acknowledges support from
  Japan Society for the Promotion of Science (JSPS) through the JSPS Research Fellowship
  for Young Scientists and Overseas Challenge Program for Young Researchers. AV acknowledges
  support from the ERC starting grant 757258-TRIPLE and the SNF Professorship 176808-TRIPLE.
  This work was supported by the project FOGHAR (Agence Nationale de la Recherche,
  ANR-13-BS05-0010-02). JB acknowledges support from the ORAGE project from the Agence
  Nationale de la Recherche under grant ANR-14-CE33-0016-03. JR acknowledges support
  from the ERC starting grant 336736-CALENDS. T. H. acknowledges supports by the Grant-inAid
  for Scientic Research 19J01620.
article_number: A12
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Haruka
  full_name: Kusakabe, Haruka
  last_name: Kusakabe
- first_name: Jérémy
  full_name: Blaizot, Jérémy
  last_name: Blaizot
- first_name: Thibault
  full_name: Garel, Thibault
  last_name: Garel
- first_name: Anne
  full_name: Verhamme, Anne
  last_name: Verhamme
- first_name: Roland
  full_name: Bacon, Roland
  last_name: Bacon
- first_name: Johan
  full_name: Richard, Johan
  last_name: Richard
- first_name: Takuya
  full_name: Hashimoto, Takuya
  last_name: Hashimoto
- first_name: Hanae
  full_name: Inami, Hanae
  last_name: Inami
- first_name: Simon
  full_name: Conseil, Simon
  last_name: Conseil
- first_name: Bruno
  full_name: Guiderdoni, Bruno
  last_name: Guiderdoni
- first_name: Alyssa B.
  full_name: Drake, Alyssa B.
  last_name: Drake
- first_name: Edmund
  full_name: Christian Herenz, Edmund
  last_name: Christian Herenz
- first_name: Joop
  full_name: Schaye, Joop
  last_name: Schaye
- first_name: Pascal
  full_name: Oesch, Pascal
  last_name: Oesch
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Raffaella
  full_name: Anna Marino, Raffaella
  last_name: Anna Marino
- first_name: Kasper
  full_name: Borello Schmidt, Kasper
  last_name: Borello Schmidt
- first_name: Roser
  full_name: Pelló, Roser
  last_name: Pelló
- first_name: Michael
  full_name: Maseda, Michael
  last_name: Maseda
- first_name: Floriane
  full_name: Leclercq, Floriane
  last_name: Leclercq
- first_name: Josephine
  full_name: Kerutt, Josephine
  last_name: Kerutt
- first_name: Guillaume
  full_name: Mahler, Guillaume
  last_name: Mahler
citation:
  ama: 'Kusakabe H, Blaizot J, Garel T, et al. The MUSE Hubble Ultra Deep Field Survey:
    XIV. Evolution of the Lyα emitter fraction from z = 3 to z = 6. <i>Astronomy &#38;
    Astrophysics</i>. 2020;638. doi:<a href="https://doi.org/10.1051/0004-6361/201937340">10.1051/0004-6361/201937340</a>'
  apa: 'Kusakabe, H., Blaizot, J., Garel, T., Verhamme, A., Bacon, R., Richard, J.,
    … Mahler, G. (2020). The MUSE Hubble Ultra Deep Field Survey: XIV. Evolution of
    the Lyα emitter fraction from z = 3 to z = 6. <i>Astronomy &#38; Astrophysics</i>.
    EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/201937340">https://doi.org/10.1051/0004-6361/201937340</a>'
  chicago: 'Kusakabe, Haruka, Jérémy Blaizot, Thibault Garel, Anne Verhamme, Roland
    Bacon, Johan Richard, Takuya Hashimoto, et al. “The MUSE Hubble Ultra Deep Field
    Survey: XIV. Evolution of the Lyα Emitter Fraction from z = 3 to z = 6.” <i>Astronomy
    &#38; Astrophysics</i>. EDP Sciences, 2020. <a href="https://doi.org/10.1051/0004-6361/201937340">https://doi.org/10.1051/0004-6361/201937340</a>.'
  ieee: 'H. Kusakabe <i>et al.</i>, “The MUSE Hubble Ultra Deep Field Survey: XIV.
    Evolution of the Lyα emitter fraction from z = 3 to z = 6,” <i>Astronomy &#38;
    Astrophysics</i>, vol. 638. EDP Sciences, 2020.'
  ista: 'Kusakabe H, Blaizot J, Garel T, Verhamme A, Bacon R, Richard J, Hashimoto
    T, Inami H, Conseil S, Guiderdoni B, Drake AB, Christian Herenz E, Schaye J, Oesch
    P, Matthee JJ, Anna Marino R, Borello Schmidt K, Pelló R, Maseda M, Leclercq F,
    Kerutt J, Mahler G. 2020. The MUSE Hubble Ultra Deep Field Survey: XIV. Evolution
    of the Lyα emitter fraction from z = 3 to z = 6. Astronomy &#38; Astrophysics.
    638, A12.'
  mla: 'Kusakabe, Haruka, et al. “The MUSE Hubble Ultra Deep Field Survey: XIV. Evolution
    of the Lyα Emitter Fraction from z = 3 to z = 6.” <i>Astronomy &#38; Astrophysics</i>,
    vol. 638, A12, EDP Sciences, 2020, doi:<a href="https://doi.org/10.1051/0004-6361/201937340">10.1051/0004-6361/201937340</a>.'
  short: H. Kusakabe, J. Blaizot, T. Garel, A. Verhamme, R. Bacon, J. Richard, T.
    Hashimoto, H. Inami, S. Conseil, B. Guiderdoni, A.B. Drake, E. Christian Herenz,
    J. Schaye, P. Oesch, J.J. Matthee, R. Anna Marino, K. Borello Schmidt, R. Pelló,
    M. Maseda, F. Leclercq, J. Kerutt, G. Mahler, Astronomy &#38; Astrophysics 638
    (2020).
date_created: 2022-07-06T09:50:48Z
date_published: 2020-06-03T00:00:00Z
date_updated: 2022-07-19T09:35:20Z
day: '03'
doi: 10.1051/0004-6361/201937340
extern: '1'
external_id:
  arxiv:
  - '2003.12083'
intvolume: '       638'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- 'dark ages / reionization / first stars / early Universe / cosmology: observations
  / galaxies: evolution / galaxies: high-redshift / intergalactic medium'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2003.12083
month: '06'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The MUSE Hubble Ultra Deep Field Survey: XIV. Evolution of the Lyα emitter
  fraction from z = 3 to z = 6'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 638
year: '2020'
...
---
_id: '11504'
abstract:
- lang: eng
  text: We present spatially resolved maps of six individually-detected Lyman α haloes
    (LAHs) as well as a first statistical analysis of the Lyman α (Lyα) spectral signature
    in the circum-galactic medium of high-redshift star-forming galaxies (−17.5 >
     MUV >  −21.5) using the Multi-Unit Spectroscopic Explorer. Our resolved spectroscopic
    analysis of the LAHs reveals significant intrahalo variations of the Lyα line
    profile. Using a three-dimensional two-component model for the Lyα emission, we
    measured the full width at half maximum (FWHM), the peak velocity shift, and the
    asymmetry of the Lyα line in the core and in the halo of 19 galaxies. We find
    that the Lyα line shape is statistically different in the halo compared to the
    core (in terms of width, peak wavelength, and asymmetry) for ≈40% of our galaxies.
    Similarly to object-by-object based studies and a recent resolved study using
    lensing, we find a correlation between the peak velocity shift and the width of
    the Lyα line both at the interstellar and circum-galactic scales. This trend has
    been predicted by radiative transfer simulations of galactic winds as a result
    of resonant scattering in outflows. While there is a lack of correlation between
    the spectral properties and the spatial scale lengths of our LAHs, we find a correlation
    between the width of the line in the LAH and the halo flux fraction. Interestingly,
    UV bright galaxies (MUV <  −20) show broader, more redshifted, and less asymmetric
    Lyα lines in their haloes. The most significant correlation found is for the FWHM
    of the line and the UV continuum slope of the galaxy, suggesting that the redder
    galaxies have broader Lyα lines. The generally broad and red line shapes found
    in the halo component suggest that the Lyα haloes are powered either by scattering
    processes through an outflowing medium, fluorescent emission from outflowing cold
    clumps of gas, or a mix of both. Considering the large diversity of the Lyα line
    profiles observed in our sample and the lack of strong correlation, the interpretation
    of our results is still broadly open and underlines the need for realistic spatially
    resolved models of the LAHs.
acknowledgement: F.L., R.B., and S.C. acknowledge support from the ERC advanced grant
  339659-MUSICOS. F.L., T.G., H.K., and A.V. acknowledge support from the ERC starting
  grant ERC-757258-TRIPLE. A.C. and J.R. acknowledge support from the ERC starting
  grant 336736-CALENDS. J.B. acknowledges support by FCT/MCTES through national funds
  (PID-DAC) by grant UID/FIS/04434/2019 and through Investigador FCT Contract No.IF/01654/2014/CP1215/CT0003.
  T.H. was supported by Leading Initiative for Excellent Young Researchers, MEXT,
  Japan.
article_number: A82
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Floriane
  full_name: Leclercq, Floriane
  last_name: Leclercq
- first_name: Roland
  full_name: Bacon, Roland
  last_name: Bacon
- first_name: Anne
  full_name: Verhamme, Anne
  last_name: Verhamme
- first_name: Thibault
  full_name: Garel, Thibault
  last_name: Garel
- first_name: Jérémy
  full_name: Blaizot, Jérémy
  last_name: Blaizot
- first_name: Jarle
  full_name: Brinchmann, Jarle
  last_name: Brinchmann
- first_name: Sebastiano
  full_name: Cantalupo, Sebastiano
  last_name: Cantalupo
- first_name: Adélaïde
  full_name: Claeyssens, Adélaïde
  last_name: Claeyssens
- first_name: Simon
  full_name: Conseil, Simon
  last_name: Conseil
- first_name: Thierry
  full_name: Contini, Thierry
  last_name: Contini
- first_name: Takuya
  full_name: Hashimoto, Takuya
  last_name: Hashimoto
- first_name: Edmund Christian
  full_name: Herenz, Edmund Christian
  last_name: Herenz
- first_name: Haruka
  full_name: Kusakabe, Haruka
  last_name: Kusakabe
- first_name: Raffaella Anna
  full_name: Marino, Raffaella Anna
  last_name: Marino
- first_name: Michael
  full_name: Maseda, Michael
  last_name: Maseda
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Peter
  full_name: Mitchell, Peter
  last_name: Mitchell
- first_name: Gabriele
  full_name: Pezzulli, Gabriele
  last_name: Pezzulli
- first_name: Johan
  full_name: Richard, Johan
  last_name: Richard
- first_name: Kasper Borello
  full_name: Schmidt, Kasper Borello
  last_name: Schmidt
- first_name: Lutz
  full_name: Wisotzki, Lutz
  last_name: Wisotzki
citation:
  ama: 'Leclercq F, Bacon R, Verhamme A, et al. The MUSE Hubble Ultra Deep field survey:
    XIII. Spatially resolved spectral properties of Lyman α haloes around star-forming
    galaxies at z &#62; 3. <i>Astronomy &#38; Astrophysics</i>. 2020;635. doi:<a href="https://doi.org/10.1051/0004-6361/201937339">10.1051/0004-6361/201937339</a>'
  apa: 'Leclercq, F., Bacon, R., Verhamme, A., Garel, T., Blaizot, J., Brinchmann,
    J., … Wisotzki, L. (2020). The MUSE Hubble Ultra Deep field survey: XIII. Spatially
    resolved spectral properties of Lyman α haloes around star-forming galaxies at
    z &#62; 3. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/201937339">https://doi.org/10.1051/0004-6361/201937339</a>'
  chicago: 'Leclercq, Floriane, Roland Bacon, Anne Verhamme, Thibault Garel, Jérémy
    Blaizot, Jarle Brinchmann, Sebastiano Cantalupo, et al. “The MUSE Hubble Ultra
    Deep Field Survey: XIII. Spatially Resolved Spectral Properties of Lyman α Haloes
    around Star-Forming Galaxies at z &#62; 3.” <i>Astronomy &#38; Astrophysics</i>.
    EDP Sciences, 2020. <a href="https://doi.org/10.1051/0004-6361/201937339">https://doi.org/10.1051/0004-6361/201937339</a>.'
  ieee: 'F. Leclercq <i>et al.</i>, “The MUSE Hubble Ultra Deep field survey: XIII.
    Spatially resolved spectral properties of Lyman α haloes around star-forming galaxies
    at z &#62; 3,” <i>Astronomy &#38; Astrophysics</i>, vol. 635. EDP Sciences, 2020.'
  ista: 'Leclercq F, Bacon R, Verhamme A, Garel T, Blaizot J, Brinchmann J, Cantalupo
    S, Claeyssens A, Conseil S, Contini T, Hashimoto T, Herenz EC, Kusakabe H, Marino
    RA, Maseda M, Matthee JJ, Mitchell P, Pezzulli G, Richard J, Schmidt KB, Wisotzki
    L. 2020. The MUSE Hubble Ultra Deep field survey: XIII. Spatially resolved spectral
    properties of Lyman α haloes around star-forming galaxies at z &#62; 3. Astronomy
    &#38; Astrophysics. 635, A82.'
  mla: 'Leclercq, Floriane, et al. “The MUSE Hubble Ultra Deep Field Survey: XIII.
    Spatially Resolved Spectral Properties of Lyman α Haloes around Star-Forming Galaxies
    at z &#62; 3.” <i>Astronomy &#38; Astrophysics</i>, vol. 635, A82, EDP Sciences,
    2020, doi:<a href="https://doi.org/10.1051/0004-6361/201937339">10.1051/0004-6361/201937339</a>.'
  short: F. Leclercq, R. Bacon, A. Verhamme, T. Garel, J. Blaizot, J. Brinchmann,
    S. Cantalupo, A. Claeyssens, S. Conseil, T. Contini, T. Hashimoto, E.C. Herenz,
    H. Kusakabe, R.A. Marino, M. Maseda, J.J. Matthee, P. Mitchell, G. Pezzulli, J.
    Richard, K.B. Schmidt, L. Wisotzki, Astronomy &#38; Astrophysics 635 (2020).
date_created: 2022-07-06T09:56:20Z
date_published: 2020-03-11T00:00:00Z
date_updated: 2022-07-19T09:36:58Z
day: '11'
doi: 10.1051/0004-6361/201937339
extern: '1'
external_id:
  arxiv:
  - '2002.05731'
intvolume: '       635'
keyword:
- Space and Planetary Science
- 'Astronomy and Astrophysics galaxies: high-redshift / galaxies: formation / galaxies:
  evolution / cosmology: observations'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2002.05731
month: '03'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The MUSE Hubble Ultra Deep field survey: XIII. Spatially resolved spectral
  properties of Lyman α haloes around star-forming galaxies at z > 3'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 635
year: '2020'
...
---
_id: '11529'
abstract:
- lang: eng
  text: CR7 is among the most luminous Ly α emitters (LAEs) known at z = 6.6 and consists
    of at least three UV components that are surrounded by Ly α emission. Previous
    studies have suggested that it may host an extreme ionizing source. Here, we present
    deep integral field spectroscopy of CR7 with VLT/Multi Unit Spectroscopic Explorer
    (MUSE). We measure extended emission with a similar halo scale length as typical
    LAEs at z ≈ 5. CR7’s Ly α halo is clearly elongated along the direction connecting
    the multiple components, likely tracing the underlying gas distribution. The Ly α
    emission originates almost exclusively from the brightest UV component, but we
    also identify a faint kinematically distinct Ly α emitting region nearby a fainter
    component. Combined with new near-infrared data, the MUSE data show that the rest-frame
    Ly α equivalent width (EW) is ≈100 Å. This is a factor 4 higher than the EW measured
    in low-redshift analogues with carefully matched Ly α profiles (and thus arguably
    H I column density), but this EW can plausibly be explained by star formation.
    Alternative scenarios requiring active galactic nucleus (AGN) powering are also
    disfavoured by the narrower and steeper Ly α spectrum and much smaller IR to UV
    ratio compared to obscured AGN in other Ly α blobs. CR7’s Ly α emission, while
    extremely luminous, resembles the emission in more common LAEs at lower redshifts
    very well and is likely powered by a young metal-poor starburst.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Gabriele
  full_name: Pezzulli, Gabriele
  last_name: Pezzulli
- first_name: Ruari
  full_name: Mackenzie, Ruari
  last_name: Mackenzie
- first_name: Sebastiano
  full_name: Cantalupo, Sebastiano
  last_name: Cantalupo
- first_name: Haruka
  full_name: Kusakabe, Haruka
  last_name: Kusakabe
- first_name: Floriane
  full_name: Leclercq, Floriane
  last_name: Leclercq
- first_name: David
  full_name: Sobral, David
  last_name: Sobral
- first_name: Johan
  full_name: Richard, Johan
  last_name: Richard
- first_name: Lutz
  full_name: Wisotzki, Lutz
  last_name: Wisotzki
- first_name: Simon
  full_name: Lilly, Simon
  last_name: Lilly
- first_name: Leindert
  full_name: Boogaard, Leindert
  last_name: Boogaard
- first_name: Raffaella
  full_name: Marino, Raffaella
  last_name: Marino
- first_name: Michael
  full_name: Maseda, Michael
  last_name: Maseda
- first_name: Themiya
  full_name: Nanayakkara, Themiya
  last_name: Nanayakkara
citation:
  ama: 'Matthee JJ, Pezzulli G, Mackenzie R, et al. The nature of CR7 revealed with
    MUSE: A young starburst powering extended Ly α emission at z = 6.6. <i>Monthly
    Notices of the Royal Astronomical Society</i>. 2020;498(2):3043-3059. doi:<a href="https://doi.org/10.1093/mnras/staa2550">10.1093/mnras/staa2550</a>'
  apa: 'Matthee, J. J., Pezzulli, G., Mackenzie, R., Cantalupo, S., Kusakabe, H.,
    Leclercq, F., … Nanayakkara, T. (2020). The nature of CR7 revealed with MUSE:
    A young starburst powering extended Ly α emission at z = 6.6. <i>Monthly Notices
    of the Royal Astronomical Society</i>. Oxford University Press. <a href="https://doi.org/10.1093/mnras/staa2550">https://doi.org/10.1093/mnras/staa2550</a>'
  chicago: 'Matthee, Jorryt J, Gabriele Pezzulli, Ruari Mackenzie, Sebastiano Cantalupo,
    Haruka Kusakabe, Floriane Leclercq, David Sobral, et al. “The Nature of CR7 Revealed
    with MUSE: A Young Starburst Powering Extended Ly α Emission at z = 6.6.” <i>Monthly
    Notices of the Royal Astronomical Society</i>. Oxford University Press, 2020.
    <a href="https://doi.org/10.1093/mnras/staa2550">https://doi.org/10.1093/mnras/staa2550</a>.'
  ieee: 'J. J. Matthee <i>et al.</i>, “The nature of CR7 revealed with MUSE: A young
    starburst powering extended Ly α emission at z = 6.6,” <i>Monthly Notices of the
    Royal Astronomical Society</i>, vol. 498, no. 2. Oxford University Press, pp.
    3043–3059, 2020.'
  ista: 'Matthee JJ, Pezzulli G, Mackenzie R, Cantalupo S, Kusakabe H, Leclercq F,
    Sobral D, Richard J, Wisotzki L, Lilly S, Boogaard L, Marino R, Maseda M, Nanayakkara
    T. 2020. The nature of CR7 revealed with MUSE: A young starburst powering extended
    Ly α emission at z = 6.6. Monthly Notices of the Royal Astronomical Society. 498(2),
    3043–3059.'
  mla: 'Matthee, Jorryt J., et al. “The Nature of CR7 Revealed with MUSE: A Young
    Starburst Powering Extended Ly α Emission at z = 6.6.” <i>Monthly Notices of the
    Royal Astronomical Society</i>, vol. 498, no. 2, Oxford University Press, 2020,
    pp. 3043–59, doi:<a href="https://doi.org/10.1093/mnras/staa2550">10.1093/mnras/staa2550</a>.'
  short: J.J. Matthee, G. Pezzulli, R. Mackenzie, S. Cantalupo, H. Kusakabe, F. Leclercq,
    D. Sobral, J. Richard, L. Wisotzki, S. Lilly, L. Boogaard, R. Marino, M. Maseda,
    T. Nanayakkara, Monthly Notices of the Royal Astronomical Society 498 (2020) 3043–3059.
date_created: 2022-07-07T10:36:01Z
date_published: 2020-10-01T00:00:00Z
date_updated: 2022-08-18T11:04:05Z
day: '01'
doi: 10.1093/mnras/staa2550
extern: '1'
external_id:
  arxiv:
  - '2008.01731'
intvolume: '       498'
issue: '2'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- 'galaxies: evolution'
- 'galaxies: high-redshift'
- dark ages
- reionization
- first stars
- 'cosmology: observations'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2008.01731
month: '10'
oa: 1
oa_version: Preprint
page: 3043-3059
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  eissn:
  - 1365-2966
  issn:
  - 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The nature of CR7 revealed with MUSE: A young starburst powering extended
  Ly α emission at z = 6.6'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 498
year: '2020'
...
---
_id: '11531'
abstract:
- lang: eng
  text: While low-luminosity galaxies dominate number counts at all redshifts, their
    contribution to cosmic reionization is poorly understood due to a lack of knowledge
    of their physical properties. We isolate a sample of 35 z ≈ 4–5 continuum-faint
    Lyman-α emitters from deep VLT/MUSE spectroscopy and directly measure their H α
    emission using stacked Spitzer/IRAC Ch. 1 photometry. Based on Hubble Space Telescope
    imaging, we determine that the average UV continuum magnitude is fainter than
    −16 (≈ 0.01 L⋆), implying a median Lyman-α equivalent width of 259 Å. By combining
    the H α measurement with the UV magnitude, we determine the ionizing photon production
    efficiency, ξion, a first for such faint galaxies. The measurement of log10 (ξion
    [Hz erg−1]) = 26.28 (⁠+0.28−0.40⁠) is in excess of literature measurements of
    both continuum- and emission line-selected samples, implying a more efficient
    production of ionizing photons in these lower luminosity, Lyman-α-selected systems.
    We conclude that this elevated efficiency can be explained by stellar populations
    with metallicities between 4 × 10−4 and 0.008, with light-weighted ages less than
    3 Myr.
acknowledgement: 'We would like to thank the anonymous referee for a thoughtful report
  and suggestions that have improved this manuscript. We are also grateful to everyone
  involved in the Spitzer Space Telescope mission and everyone at the Spitzer Science
  Center: we are truly fortunate to have been able to use data from this facility.
  J. B. acknowledges support by FCT/MCTES through national funds by this grant UID/FIS/04434/2019
  and through the Investigador FCT contract no. IF/01654/2014/CP1215/CT0003. S. C.
  gratefully acknowledges support from Swiss National Science Foundation grant PP00P2
  163824. We would also like to thank Mauro Stefanon for his assistance with de-blending
  the IRAC photometry, Pieter van Dokkum for a number of useful suggestions, and Daniel
  Schaerer for information regarding the stellar population models. This study is
  based on observations made with ESO telescopes at the La Silla Paranal Observatory
  under programs IDs 094.A-2089(B), 095.A0010(A), 096.A-0045(A), and 096.A-0045(B).'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Michael V
  full_name: Maseda, Michael V
  last_name: Maseda
- first_name: Roland
  full_name: Bacon, Roland
  last_name: Bacon
- first_name: Daniel
  full_name: Lam, Daniel
  last_name: Lam
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Jarle
  full_name: Brinchmann, Jarle
  last_name: Brinchmann
- first_name: Joop
  full_name: Schaye, Joop
  last_name: Schaye
- first_name: Ivo
  full_name: Labbe, Ivo
  last_name: Labbe
- first_name: Kasper B
  full_name: Schmidt, Kasper B
  last_name: Schmidt
- first_name: Leindert
  full_name: Boogaard, Leindert
  last_name: Boogaard
- first_name: Rychard
  full_name: Bouwens, Rychard
  last_name: Bouwens
- first_name: Sebastiano
  full_name: Cantalupo, Sebastiano
  last_name: Cantalupo
- first_name: Marijn
  full_name: Franx, Marijn
  last_name: Franx
- first_name: Takuya
  full_name: Hashimoto, Takuya
  last_name: Hashimoto
- first_name: Hanae
  full_name: Inami, Hanae
  last_name: Inami
- first_name: Haruka
  full_name: Kusakabe, Haruka
  last_name: Kusakabe
- first_name: Guillaume
  full_name: Mahler, Guillaume
  last_name: Mahler
- first_name: Themiya
  full_name: Nanayakkara, Themiya
  last_name: Nanayakkara
- first_name: Johan
  full_name: Richard, Johan
  last_name: Richard
- first_name: Lutz
  full_name: Wisotzki, Lutz
  last_name: Wisotzki
citation:
  ama: Maseda MV, Bacon R, Lam D, et al. Elevated ionizing photon production efficiency
    in faint high-equivalent-width Lyman-α emitters. <i>Monthly Notices of the Royal
    Astronomical Society</i>. 2020;493(4):5120-5130. doi:<a href="https://doi.org/10.1093/mnras/staa622">10.1093/mnras/staa622</a>
  apa: Maseda, M. V., Bacon, R., Lam, D., Matthee, J. J., Brinchmann, J., Schaye,
    J., … Wisotzki, L. (2020). Elevated ionizing photon production efficiency in faint
    high-equivalent-width Lyman-α emitters. <i>Monthly Notices of the Royal Astronomical
    Society</i>. Oxford University Press. <a href="https://doi.org/10.1093/mnras/staa622">https://doi.org/10.1093/mnras/staa622</a>
  chicago: Maseda, Michael V, Roland Bacon, Daniel Lam, Jorryt J Matthee, Jarle Brinchmann,
    Joop Schaye, Ivo Labbe, et al. “Elevated Ionizing Photon Production Efficiency
    in Faint High-Equivalent-Width Lyman-α Emitters.” <i>Monthly Notices of the Royal
    Astronomical Society</i>. Oxford University Press, 2020. <a href="https://doi.org/10.1093/mnras/staa622">https://doi.org/10.1093/mnras/staa622</a>.
  ieee: M. V. Maseda <i>et al.</i>, “Elevated ionizing photon production efficiency
    in faint high-equivalent-width Lyman-α emitters,” <i>Monthly Notices of the Royal
    Astronomical Society</i>, vol. 493, no. 4. Oxford University Press, pp. 5120–5130,
    2020.
  ista: Maseda MV, Bacon R, Lam D, Matthee JJ, Brinchmann J, Schaye J, Labbe I, Schmidt
    KB, Boogaard L, Bouwens R, Cantalupo S, Franx M, Hashimoto T, Inami H, Kusakabe
    H, Mahler G, Nanayakkara T, Richard J, Wisotzki L. 2020. Elevated ionizing photon
    production efficiency in faint high-equivalent-width Lyman-α emitters. Monthly
    Notices of the Royal Astronomical Society. 493(4), 5120–5130.
  mla: Maseda, Michael V., et al. “Elevated Ionizing Photon Production Efficiency
    in Faint High-Equivalent-Width Lyman-α Emitters.” <i>Monthly Notices of the Royal
    Astronomical Society</i>, vol. 493, no. 4, Oxford University Press, 2020, pp.
    5120–30, doi:<a href="https://doi.org/10.1093/mnras/staa622">10.1093/mnras/staa622</a>.
  short: M.V. Maseda, R. Bacon, D. Lam, J.J. Matthee, J. Brinchmann, J. Schaye, I.
    Labbe, K.B. Schmidt, L. Boogaard, R. Bouwens, S. Cantalupo, M. Franx, T. Hashimoto,
    H. Inami, H. Kusakabe, G. Mahler, T. Nanayakkara, J. Richard, L. Wisotzki, Monthly
    Notices of the Royal Astronomical Society 493 (2020) 5120–5130.
date_created: 2022-07-07T10:46:41Z
date_published: 2020-04-01T00:00:00Z
date_updated: 2022-08-18T11:23:27Z
day: '01'
doi: 10.1093/mnras/staa622
extern: '1'
external_id:
  arxiv:
  - '2002.11117'
intvolume: '       493'
issue: '4'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- 'Galaxies: evolution'
- 'Galaxies: high-redshift'
- 'Galaxies: ISM'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1093/mnras/staa622
month: '04'
oa: 1
oa_version: Published Version
page: 5120-5130
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  eissn:
  - 1365-2966
  issn:
  - 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Elevated ionizing photon production efficiency in faint high-equivalent-width
  Lyman-α emitters
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 493
year: '2020'
...
---
_id: '11533'
abstract:
- lang: eng
  text: We explore deep rest-frame UV to FIR data in the COSMOS field to measure the
    individual spectral energy distributions (SED) of the ∼4000 SC4K (Sobral et al.)
    Lyman α (Ly α) emitters (LAEs) at z ∼ 2–6. We find typical stellar masses of 109.3
    ± 0.6 M⊙ and star formation rates (SFR) of SFRSED=4.4+10.5−2.4 M⊙ yr−1 and SFRLyα=5.9+6.3−2.6 M⊙ yr−1,
    combined with very blue UV slopes of β=−2.1+0.5−0.4⁠, but with significant variations
    within the population. MUV and β are correlated in a similar way to UV-selected
    sources, but LAEs are consistently bluer. This suggests that LAEs are the youngest
    and/or most dust-poor subset of the UV-selected population. We also study the
    Ly α rest-frame equivalent width (EW0) and find 45 ‘extreme’ LAEs with EW0 > 240 Å
    (3σ), implying a low number density of (7 ± 1) × 10−7 Mpc−3. Overall, we measure
    little to no evolution of the Ly α EW0 and scale length parameter (w0), which
    are consistently high (EW0=140+280−70 Å, w0=129+11−11 Å) from z ∼ 6 to z ∼ 2 and
    below. However, w0 is anticorrelated with MUV and stellar mass. Our results imply
    that sources selected as LAEs have a high Ly α escape fraction (fesc,Ly α) irrespective
    of cosmic time, but fesc,Ly α is still higher for UV-fainter and lower mass LAEs.
    The least massive LAEs (<109.5 M⊙) are typically located above the star formation
    ‘main sequence’ (MS), but the offset from the MS decreases towards z ∼ 6 and towards
    1010 M⊙. Our results imply a lack of evolution in the properties of LAEs across
    time and reveals the increasing overlap in properties of LAEs and UV-continuum
    selected galaxies as typical star-forming galaxies at high redshift effectively
    become LAEs.
acknowledgement: We thank the anonymous referee for the valuable feedback that significantly
  improved the quality and clarity of this paper. SS and JC acknowledge studentships
  from Lancaster University. APA acknowledges support from Fundação para a Ciência
  e a Tecnologia through the project PTDC/FISAST/31546/2017. The authors would like
  to thank Ali Khostovan, Sara Perez Sanchez, Alex Bennett and Tom Rose for contributions
  and discussions in the early stages of this work. Based on data products from observations
  made with ESO Telescopes at the La Silla Paranal Observatory under ESO programme
  ID 179.A-2005 and on data products produced by CALET and the Cambridge Astronomy
  Survey Unit on behalf of the UltraVISTA consortium. Finally, the authors acknowledge
  the unique value of the publicly available analysis software TOPCAT (Taylor 2005)
  and publicly available programming language Python, including the numpy, pyfits,
  matplotlib, scipy and astropy (Astropy Collaboration et al. 2013) packages. This
  work is based on the public SC4K sample of LAEs (Sobral et al. 2018a) and we release
  the full catalogue with all the photometry and properties derived in this paper,
  in electronic format, along with the relevant tables.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: S
  full_name: Santos, S
  last_name: Santos
- first_name: D
  full_name: Sobral, D
  last_name: Sobral
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: J
  full_name: Calhau, J
  last_name: Calhau
- first_name: E
  full_name: da Cunha, E
  last_name: da Cunha
- first_name: B
  full_name: Ribeiro, B
  last_name: Ribeiro
- first_name: A
  full_name: Paulino-Afonso, A
  last_name: Paulino-Afonso
- first_name: P
  full_name: Arrabal Haro, P
  last_name: Arrabal Haro
- first_name: J
  full_name: Butterworth, J
  last_name: Butterworth
citation:
  ama: Santos S, Sobral D, Matthee JJ, et al. The evolution of rest-frame UV properties,
    Ly α EWs, and the SFR–stellar mass relation at z ∼ 2–6 for SC4K LAEs. <i>Monthly
    Notices of the Royal Astronomical Society</i>. 2020;493(1):141-160. doi:<a href="https://doi.org/10.1093/mnras/staa093">10.1093/mnras/staa093</a>
  apa: Santos, S., Sobral, D., Matthee, J. J., Calhau, J., da Cunha, E., Ribeiro,
    B., … Butterworth, J. (2020). The evolution of rest-frame UV properties, Ly α
    EWs, and the SFR–stellar mass relation at z ∼ 2–6 for SC4K LAEs. <i>Monthly Notices
    of the Royal Astronomical Society</i>. Oxford University Press. <a href="https://doi.org/10.1093/mnras/staa093">https://doi.org/10.1093/mnras/staa093</a>
  chicago: Santos, S, D Sobral, Jorryt J Matthee, J Calhau, E da Cunha, B Ribeiro,
    A Paulino-Afonso, P Arrabal Haro, and J Butterworth. “The Evolution of Rest-Frame
    UV Properties, Ly α EWs, and the SFR–Stellar Mass Relation at z ∼ 2–6 for SC4K
    LAEs.” <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University
    Press, 2020. <a href="https://doi.org/10.1093/mnras/staa093">https://doi.org/10.1093/mnras/staa093</a>.
  ieee: S. Santos <i>et al.</i>, “The evolution of rest-frame UV properties, Ly α
    EWs, and the SFR–stellar mass relation at z ∼ 2–6 for SC4K LAEs,” <i>Monthly Notices
    of the Royal Astronomical Society</i>, vol. 493, no. 1. Oxford University Press,
    pp. 141–160, 2020.
  ista: Santos S, Sobral D, Matthee JJ, Calhau J, da Cunha E, Ribeiro B, Paulino-Afonso
    A, Arrabal Haro P, Butterworth J. 2020. The evolution of rest-frame UV properties,
    Ly α EWs, and the SFR–stellar mass relation at z ∼ 2–6 for SC4K LAEs. Monthly
    Notices of the Royal Astronomical Society. 493(1), 141–160.
  mla: Santos, S., et al. “The Evolution of Rest-Frame UV Properties, Ly α EWs, and
    the SFR–Stellar Mass Relation at z ∼ 2–6 for SC4K LAEs.” <i>Monthly Notices of
    the Royal Astronomical Society</i>, vol. 493, no. 1, Oxford University Press,
    2020, pp. 141–60, doi:<a href="https://doi.org/10.1093/mnras/staa093">10.1093/mnras/staa093</a>.
  short: S. Santos, D. Sobral, J.J. Matthee, J. Calhau, E. da Cunha, B. Ribeiro, A.
    Paulino-Afonso, P. Arrabal Haro, J. Butterworth, Monthly Notices of the Royal
    Astronomical Society 493 (2020) 141–160.
date_created: 2022-07-07T12:05:23Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2022-08-18T11:27:43Z
day: '01'
doi: 10.1093/mnras/staa093
extern: '1'
external_id:
  arxiv:
  - '1910.02959'
intvolume: '       493'
issue: '1'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- 'galaxies: evolution'
- 'galaxies: formation'
- 'galaxies: high-redshift'
- 'galaxies: star formation'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1910.02959
month: '03'
oa: 1
oa_version: Preprint
page: 141-160
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  eissn:
  - 1365-2966
  issn:
  - 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: The evolution of rest-frame UV properties, Ly α EWs, and the SFR–stellar mass
  relation at z ∼ 2–6 for SC4K LAEs
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 493
year: '2020'
...
---
_id: '11534'
abstract:
- lang: eng
  text: The observed properties of the Lyman-α (Ly α) emission line are a powerful
    probe of neutral gas in and around galaxies. We present spatially resolved Ly α
    spectroscopy with VLT/MUSE targeting VR7, a UV-luminous galaxy at z = 6.532 with
    moderate Ly α equivalent width (EW0 ≈ 38 Å). These data are combined with deep
    resolved [CII]158μm spectroscopy obtained with ALMA and UV imaging from HST and
    we also detect UV continuum with MUSE. Ly α emission is clearly detected with
    S/N ≈ 40 and FWHM of 374 km s−1. Ly α and [C II] are similarly extended beyond
    the UV, with effective radius reff = 2.1 ± 0.2 kpc for a single exponential model
    or reff,Lyα,halo=3.45+1.08−0.87 kpc when measured jointly with the UV continuum.
    The Ly α profile is broader and redshifted with respect to the [C II] line (by
    213 km s−1), but there are spatial variations that are qualitatively similar in
    both lines and coincide with resolved UV components. This suggests that the emission
    originates from two components with plausibly different H I column densities.
    We place VR7 in the context of other galaxies at similar and lower redshift. The
    Ly α halo scale length is similar at different redshifts and velocity shifts with
    respect to the systemic are typically smaller. Overall, we find little indications
    of a more neutral vicinity at higher redshift. This means that the local (∼10 kpc)
    neutral gas conditions that determine the observed Ly α properties in VR7 resemble
    the conditions in post-reionization galaxies.
acknowledgement: 'We thank the referee for their suggestions and constructive comments
  that helped to improve the presentation of our results. Based on observations obtained
  with the Very Large Telescope, program 99.A-0462. Based on observations made with
  the NASA/ESA Hubble Space Telescope, obtained at the Space Telescope Science Institute,
  which is operated by the Association of Universities for Research in Astronomy,
  Inc., under NASA contract NAS 5-26555. These observations are associated with program
  #14699. This paper makes use of the following ALMA data: ADS/JAO.ALMA#2017.1.01451.S.
  ALMA is a partnership of ESO (representing its member states), NSF (USA), and NINS
  (Japan), together with NRC (Canada) and NSC and ASIAA (Taiwan) and KASI (Republic
  of Korea), in cooperation with the Republic of Chile. The Joint ALMA Observatory
  is operated by ESO, AUI/NRAO, and NAOJ. MG acknowledges support from NASA grant
  NNX17AK58G. GP and SC gratefully acknowledge support from Swiss National Science
  Foundation grant PP00P2 163824. BD acknowledges financial support from the National
  Science Foundation, grant number 1716907. We have benefited greatly from the public
  available programming language PYTHON, including the NUMPY, MATPLOTLIB, SCIPY (Jones
  et al. 2001; Hunter 2007; van der Walt, Colbert & Varoquaux 2011) and ASTROPY (Astropy
  Collaboration 2013) packages, the astronomical imaging tools SEXTRACTOR, SWARP,
  and SCAMP (Bertin & Arnouts 1996; Bertin 2006, 2010) and the TOPCAT analysis tool
  (Taylor 2013).'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: David
  full_name: Sobral, David
  last_name: Sobral
- first_name: Max
  full_name: Gronke, Max
  last_name: Gronke
- first_name: Gabriele
  full_name: Pezzulli, Gabriele
  last_name: Pezzulli
- first_name: Sebastiano
  full_name: Cantalupo, Sebastiano
  last_name: Cantalupo
- first_name: Huub
  full_name: Röttgering, Huub
  last_name: Röttgering
- first_name: Behnam
  full_name: Darvish, Behnam
  last_name: Darvish
- first_name: Sérgio
  full_name: Santos, Sérgio
  last_name: Santos
citation:
  ama: Matthee JJ, Sobral D, Gronke M, et al. Resolved Lyman-α properties of a luminous
    Lyman-break galaxy in a large ionized bubble at z = 6.53 . <i>Monthly Notices
    of the Royal Astronomical Society</i>. 2020;492(2):1778-1790. doi:<a href="https://doi.org/10.1093/mnras/stz3554">10.1093/mnras/stz3554</a>
  apa: Matthee, J. J., Sobral, D., Gronke, M., Pezzulli, G., Cantalupo, S., Röttgering,
    H., … Santos, S. (2020). Resolved Lyman-α properties of a luminous Lyman-break
    galaxy in a large ionized bubble at z = 6.53 . <i>Monthly Notices of the Royal
    Astronomical Society</i>. Oxford University Press. <a href="https://doi.org/10.1093/mnras/stz3554">https://doi.org/10.1093/mnras/stz3554</a>
  chicago: Matthee, Jorryt J, David Sobral, Max Gronke, Gabriele Pezzulli, Sebastiano
    Cantalupo, Huub Röttgering, Behnam Darvish, and Sérgio Santos. “Resolved Lyman-α
    Properties of a Luminous Lyman-Break Galaxy in a Large Ionized Bubble at z = 6.53
    .” <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University
    Press, 2020. <a href="https://doi.org/10.1093/mnras/stz3554">https://doi.org/10.1093/mnras/stz3554</a>.
  ieee: J. J. Matthee <i>et al.</i>, “Resolved Lyman-α properties of a luminous Lyman-break
    galaxy in a large ionized bubble at z = 6.53 ,” <i>Monthly Notices of the Royal
    Astronomical Society</i>, vol. 492, no. 2. Oxford University Press, pp. 1778–1790,
    2020.
  ista: Matthee JJ, Sobral D, Gronke M, Pezzulli G, Cantalupo S, Röttgering H, Darvish
    B, Santos S. 2020. Resolved Lyman-α properties of a luminous Lyman-break galaxy
    in a large ionized bubble at z = 6.53 . Monthly Notices of the Royal Astronomical
    Society. 492(2), 1778–1790.
  mla: Matthee, Jorryt J., et al. “Resolved Lyman-α Properties of a Luminous Lyman-Break
    Galaxy in a Large Ionized Bubble at z = 6.53 .” <i>Monthly Notices of the Royal
    Astronomical Society</i>, vol. 492, no. 2, Oxford University Press, 2020, pp.
    1778–90, doi:<a href="https://doi.org/10.1093/mnras/stz3554">10.1093/mnras/stz3554</a>.
  short: J.J. Matthee, D. Sobral, M. Gronke, G. Pezzulli, S. Cantalupo, H. Röttgering,
    B. Darvish, S. Santos, Monthly Notices of the Royal Astronomical Society 492 (2020)
    1778–1790.
date_created: 2022-07-07T12:21:36Z
date_published: 2020-02-01T00:00:00Z
date_updated: 2022-08-18T11:29:53Z
day: '01'
doi: 10.1093/mnras/stz3554
extern: '1'
external_id:
  arxiv:
  - '1909.06376'
intvolume: '       492'
issue: '2'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- 'galaxies: evolution'
- 'galaxies: high-redshift'
- dark ages
- reionization
- first stars
- 'cosmology: observations'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1909.06376
month: '02'
oa: 1
oa_version: Preprint
page: 1778-1790
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  eissn:
  - 1365-2966
  issn:
  - 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Resolved Lyman-α properties of a luminous Lyman-break galaxy in a large ionized
  bubble at z = 6.53 '
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 492
year: '2020'
...
---
_id: '11539'
abstract:
- lang: eng
  text: 'Despite recent progress in understanding Ly α emitters (LAEs), relatively
    little is known regarding their typical black hole activity across cosmic time.
    Here, we study the X-ray and radio properties of ∼4000 LAEs at 2.2 < z < 6 from
    the SC4K survey in the COSMOS field. We detect 254 (⁠6.8per cent±0.4per cent⁠)
    LAEs individually in the X-rays (S/N > 3) with an average luminosity of 1044.31±0.01ergs−1
    and average black hole accretion rate (BHAR) of 0.72±0.01 M⊙ yr−1, consistent
    with moderate to high accreting active galactic neuclei (AGNs). We detect 120
    sources in deep radio data (radio AGN fraction of 3.2per cent±0.3per cent⁠). The
    global AGN fraction (⁠8.6per cent±0.4per cent⁠) rises with Ly α luminosity and
    declines with increasing redshift. For X-ray-detected LAEs, Ly α luminosities
    correlate with the BHARs, suggesting that Ly α luminosity becomes a BHAR indicator.
    Most LAEs (⁠93.1per cent±0.6per cent⁠) at 2 < z < 6 have no detectable X-ray emission
    (BHARs < 0.017 M⊙ yr−1). The median star formation rate (SFR) of star-forming
    LAEs from Ly α and radio luminosities is 7.6+6.6−2.8 M⊙ yr−1. The black hole to
    galaxy growth ratio (BHAR/SFR) for LAEs is <0.0022, consistent with typical star-forming
    galaxies and the local BHAR/SFR relation. We conclude that LAEs at 2 < z < 6 include
    two different populations: an AGN population, where Ly α luminosity traces BHAR,
    and another with low SFRs which remain undetected in even the deepest X-ray stacks
    but is detected in the radio stacks.'
acknowledgement: JM acknowledges the support of a Huygens PhD fellowship from Leiden
  University. We thank Camila Correa for help analysing snipshot merger trees. We
  thank the anonymous referee for constructive comments. We also thank Jarle Brinchmann,
  Rob Crain, Antonios Katsianis, Paola Popesso, and David Sobral for discussions and
  suggestions. We also thank the participants of the Lorentz Center workshop ‘A Decade
  of the Star-Forming Main Sequence’ held on 2017 September 4–8, for discussions and
  ideas. We have benefited from the public available programming language PYTHON,
  including the NUMPY, MATPLOTLIB, and SCIPY (Hunter 2007) packages and the TOPCAT
  analysis tool (Taylor 2013).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: João
  full_name: Calhau, João
  last_name: Calhau
- first_name: David
  full_name: Sobral, David
  last_name: Sobral
- first_name: Sérgio
  full_name: Santos, Sérgio
  last_name: Santos
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Ana
  full_name: Paulino-Afonso, Ana
  last_name: Paulino-Afonso
- first_name: Andra
  full_name: Stroe, Andra
  last_name: Stroe
- first_name: Brooke
  full_name: Simmons, Brooke
  last_name: Simmons
- first_name: Cassandra
  full_name: Barlow-Hall, Cassandra
  last_name: Barlow-Hall
- first_name: Benjamin
  full_name: Adams, Benjamin
  last_name: Adams
citation:
  ama: 'Calhau J, Sobral D, Santos S, et al. The X-ray and radio activity of typical
    and luminous Ly α emitters from z ∼ 2 to z ∼ 6: Evidence for a diverse, evolving
    population. <i>Monthly Notices of the Royal Astronomical Society</i>. 2020;493(3):3341-3362.
    doi:<a href="https://doi.org/10.1093/mnras/staa476">10.1093/mnras/staa476</a>'
  apa: 'Calhau, J., Sobral, D., Santos, S., Matthee, J. J., Paulino-Afonso, A., Stroe,
    A., … Adams, B. (2020). The X-ray and radio activity of typical and luminous Ly α
    emitters from z ∼ 2 to z ∼ 6: Evidence for a diverse, evolving population. <i>Monthly
    Notices of the Royal Astronomical Society</i>. Oxford University Press. <a href="https://doi.org/10.1093/mnras/staa476">https://doi.org/10.1093/mnras/staa476</a>'
  chicago: 'Calhau, João, David Sobral, Sérgio Santos, Jorryt J Matthee, Ana Paulino-Afonso,
    Andra Stroe, Brooke Simmons, Cassandra Barlow-Hall, and Benjamin Adams. “The X-Ray
    and Radio Activity of Typical and Luminous Ly α Emitters from z ∼ 2 to z ∼ 6:
    Evidence for a Diverse, Evolving Population.” <i>Monthly Notices of the Royal
    Astronomical Society</i>. Oxford University Press, 2020. <a href="https://doi.org/10.1093/mnras/staa476">https://doi.org/10.1093/mnras/staa476</a>.'
  ieee: 'J. Calhau <i>et al.</i>, “The X-ray and radio activity of typical and luminous
    Ly α emitters from z ∼ 2 to z ∼ 6: Evidence for a diverse, evolving population,”
    <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 493, no. 3. Oxford
    University Press, pp. 3341–3362, 2020.'
  ista: 'Calhau J, Sobral D, Santos S, Matthee JJ, Paulino-Afonso A, Stroe A, Simmons
    B, Barlow-Hall C, Adams B. 2020. The X-ray and radio activity of typical and luminous
    Ly α emitters from z ∼ 2 to z ∼ 6: Evidence for a diverse, evolving population.
    Monthly Notices of the Royal Astronomical Society. 493(3), 3341–3362.'
  mla: 'Calhau, João, et al. “The X-Ray and Radio Activity of Typical and Luminous
    Ly α Emitters from z ∼ 2 to z ∼ 6: Evidence for a Diverse, Evolving Population.”
    <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 493, no. 3, Oxford
    University Press, 2020, pp. 3341–62, doi:<a href="https://doi.org/10.1093/mnras/staa476">10.1093/mnras/staa476</a>.'
  short: J. Calhau, D. Sobral, S. Santos, J.J. Matthee, A. Paulino-Afonso, A. Stroe,
    B. Simmons, C. Barlow-Hall, B. Adams, Monthly Notices of the Royal Astronomical
    Society 493 (2020) 3341–3362.
date_created: 2022-07-08T07:34:10Z
date_published: 2020-04-01T00:00:00Z
date_updated: 2022-08-18T11:25:31Z
day: '01'
doi: 10.1093/mnras/staa476
extern: '1'
external_id:
  arxiv:
  - '1909.11672'
intvolume: '       493'
issue: '3'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- 'galaxies: active'
- 'galaxies: evolution'
- 'galaxies: high-redshift'
- 'quasars: supermassive black holes'
- 'galaxies: star formation'
- 'cosmology: observations'
- 'X-rays: galaxies'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1909.11672
month: '04'
oa: 1
oa_version: Preprint
page: 3341-3362
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  eissn:
  - 1365-2966
  issn:
  - 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The X-ray and radio activity of typical and luminous Ly α emitters from z
  ∼ 2 to z ∼ 6: Evidence for a diverse, evolving population'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 493
year: '2020'
...
---
_id: '11586'
abstract:
- lang: eng
  text: Distant luminous Lyman-α emitters are excellent targets for detailed observations
    of galaxies in the epoch of reionisation. Spatially resolved observations of these
    galaxies allow us to simultaneously probe the emission from young stars, partially
    ionised gas in the interstellar medium and to constrain the properties of the
    surrounding hydrogen in the circumgalactic medium. We review recent results from
    (spectroscopic) follow-up studies of the rest-frame UV, Lyman-α and [CII] emission
    in luminous galaxies observed ∼500 Myr after the Big Bang with ALMA, HST/WFC3
    and VLT/X-SHOOTER. These galaxies likely reside in early ionised bubbles and are
    complex systems, consisting of multiple well separated and resolved components
    where traces of metals are already present.
article_processing_charge: No
arxiv: 1
author:
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: David
  full_name: Sobral, David
  last_name: Sobral
citation:
  ama: 'Matthee JJ, Sobral D. Unveiling the most luminous Lyman-α emitters in the
    epoch of reionisation. In: <i>Proceedings of the International Astronomical Union</i>.
    Vol 15. Cambridge University Press; 2020:21-25. doi:<a href="https://doi.org/10.1017/s1743921319009451">10.1017/s1743921319009451</a>'
  apa: Matthee, J. J., &#38; Sobral, D. (2020). Unveiling the most luminous Lyman-α
    emitters in the epoch of reionisation. In <i>Proceedings of the International
    Astronomical Union</i> (Vol. 15, pp. 21–25). Cambridge University Press. <a href="https://doi.org/10.1017/s1743921319009451">https://doi.org/10.1017/s1743921319009451</a>
  chicago: Matthee, Jorryt J, and David Sobral. “Unveiling the Most Luminous Lyman-α
    Emitters in the Epoch of Reionisation.” In <i>Proceedings of the International
    Astronomical Union</i>, 15:21–25. Cambridge University Press, 2020. <a href="https://doi.org/10.1017/s1743921319009451">https://doi.org/10.1017/s1743921319009451</a>.
  ieee: J. J. Matthee and D. Sobral, “Unveiling the most luminous Lyman-α emitters
    in the epoch of reionisation,” in <i>Proceedings of the International Astronomical
    Union</i>, 2020, vol. 15, no. S352, pp. 21–25.
  ista: Matthee JJ, Sobral D. 2020. Unveiling the most luminous Lyman-α emitters in
    the epoch of reionisation. Proceedings of the International Astronomical Union.
    vol. 15, 21–25.
  mla: Matthee, Jorryt J., and David Sobral. “Unveiling the Most Luminous Lyman-α
    Emitters in the Epoch of Reionisation.” <i>Proceedings of the International Astronomical
    Union</i>, vol. 15, no. S352, Cambridge University Press, 2020, pp. 21–25, doi:<a
    href="https://doi.org/10.1017/s1743921319009451">10.1017/s1743921319009451</a>.
  short: J.J. Matthee, D. Sobral, in:, Proceedings of the International Astronomical
    Union, Cambridge University Press, 2020, pp. 21–25.
date_created: 2022-07-14T14:08:41Z
date_published: 2020-06-04T00:00:00Z
date_updated: 2022-08-19T08:41:12Z
day: '04'
doi: 10.1017/s1743921319009451
extern: '1'
external_id:
  arxiv:
  - '1911.04774'
intvolume: '        15'
issue: S352
keyword:
- Astronomy and Astrophysics
- Space and Planetary Science
- 'galaxies: formation'
- 'galaxies: evolution'
- 'galaxies: high-redshift'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1911.04774
month: '06'
oa: 1
oa_version: Preprint
page: 21-25
publication: Proceedings of the International Astronomical Union
publication_identifier:
  eissn:
  - 1743-9221
  issn:
  - 1743-9213
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Unveiling the most luminous Lyman-α emitters in the epoch of reionisation
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2020'
...
---
_id: '8402'
abstract:
- lang: eng
  text: "Background: The mitochondrial pyruvate carrier (MPC) plays a central role
    in energy metabolism by transporting pyruvate across the inner mitochondrial membrane.
    Its heterodimeric composition and homology to SWEET and semiSWEET transporters
    set the MPC apart from the canonical mitochondrial carrier family (named MCF or
    SLC25). The import of the canonical carriers is mediated by the carrier translocase
    of the inner membrane (TIM22) pathway and is dependent on their structure, which
    features an even number of transmembrane segments and both termini in the intermembrane
    space. The import pathway of MPC proteins has not been elucidated. The odd number
    of transmembrane segments and positioning of the N-terminus in the matrix argues
    against an import via the TIM22 carrier pathway but favors an import via the flexible
    presequence pathway.\r\nResults: Here, we systematically analyzed the import pathways
    of Mpc2 and Mpc3 and report that, contrary to an expected import via the flexible
    presequence pathway, yeast MPC proteins with an odd number of transmembrane segments
    and matrix-exposed N-terminus are imported by the carrier pathway, using the receptor
    Tom70, small TIM chaperones, and the TIM22 complex. The TIM9·10 complex chaperones
    MPC proteins through the mitochondrial intermembrane space using conserved hydrophobic
    motifs that are also required for the interaction with canonical carrier proteins.\r\nConclusions:
    The carrier pathway can import paired and non-paired transmembrane helices and
    translocate N-termini to either side of the mitochondrial inner membrane, revealing
    an unexpected versatility of the mitochondrial import pathway for non-cleavable
    inner membrane proteins."
article_number: '2'
article_processing_charge: No
article_type: original
author:
- first_name: Heike
  full_name: Rampelt, Heike
  last_name: Rampelt
- first_name: Iva
  full_name: Sucec, Iva
  last_name: Sucec
- first_name: Beate
  full_name: Bersch, Beate
  last_name: Bersch
- first_name: Patrick
  full_name: Horten, Patrick
  last_name: Horten
- first_name: Inge
  full_name: Perschil, Inge
  last_name: Perschil
- first_name: Jean-Claude
  full_name: Martinou, Jean-Claude
  last_name: Martinou
- first_name: Martin
  full_name: van der Laan, Martin
  last_name: van der Laan
- first_name: Nils
  full_name: Wiedemann, Nils
  last_name: Wiedemann
- first_name: Paul
  full_name: Schanda, Paul
  id: 7B541462-FAF6-11E9-A490-E8DFE5697425
  last_name: Schanda
  orcid: 0000-0002-9350-7606
- first_name: Nikolaus
  full_name: Pfanner, Nikolaus
  last_name: Pfanner
citation:
  ama: Rampelt H, Sucec I, Bersch B, et al. The mitochondrial carrier pathway transports
    non-canonical substrates with an odd number of transmembrane segments. <i>BMC
    Biology</i>. 2020;18. doi:<a href="https://doi.org/10.1186/s12915-019-0733-6">10.1186/s12915-019-0733-6</a>
  apa: Rampelt, H., Sucec, I., Bersch, B., Horten, P., Perschil, I., Martinou, J.-C.,
    … Pfanner, N. (2020). The mitochondrial carrier pathway transports non-canonical
    substrates with an odd number of transmembrane segments. <i>BMC Biology</i>. Springer
    Nature. <a href="https://doi.org/10.1186/s12915-019-0733-6">https://doi.org/10.1186/s12915-019-0733-6</a>
  chicago: Rampelt, Heike, Iva Sucec, Beate Bersch, Patrick Horten, Inge Perschil,
    Jean-Claude Martinou, Martin van der Laan, Nils Wiedemann, Paul Schanda, and Nikolaus
    Pfanner. “The Mitochondrial Carrier Pathway Transports Non-Canonical Substrates
    with an Odd Number of Transmembrane Segments.” <i>BMC Biology</i>. Springer Nature,
    2020. <a href="https://doi.org/10.1186/s12915-019-0733-6">https://doi.org/10.1186/s12915-019-0733-6</a>.
  ieee: H. Rampelt <i>et al.</i>, “The mitochondrial carrier pathway transports non-canonical
    substrates with an odd number of transmembrane segments,” <i>BMC Biology</i>,
    vol. 18. Springer Nature, 2020.
  ista: Rampelt H, Sucec I, Bersch B, Horten P, Perschil I, Martinou J-C, van der
    Laan M, Wiedemann N, Schanda P, Pfanner N. 2020. The mitochondrial carrier pathway
    transports non-canonical substrates with an odd number of transmembrane segments.
    BMC Biology. 18, 2.
  mla: Rampelt, Heike, et al. “The Mitochondrial Carrier Pathway Transports Non-Canonical
    Substrates with an Odd Number of Transmembrane Segments.” <i>BMC Biology</i>,
    vol. 18, 2, Springer Nature, 2020, doi:<a href="https://doi.org/10.1186/s12915-019-0733-6">10.1186/s12915-019-0733-6</a>.
  short: H. Rampelt, I. Sucec, B. Bersch, P. Horten, I. Perschil, J.-C. Martinou,
    M. van der Laan, N. Wiedemann, P. Schanda, N. Pfanner, BMC Biology 18 (2020).
date_created: 2020-09-17T10:26:53Z
date_published: 2020-01-06T00:00:00Z
date_updated: 2021-01-12T08:19:02Z
day: '06'
doi: 10.1186/s12915-019-0733-6
extern: '1'
external_id:
  pmid:
  - '31907035'
intvolume: '        18'
keyword:
- Biotechnology
- Plant Science
- General Biochemistry
- Genetics and Molecular Biology
- Developmental Biology
- Cell Biology
- Physiology
- Ecology
- Evolution
- Behavior and Systematics
- Structural Biology
- General Agricultural and Biological Sciences
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1186/s12915-019-0733-6
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
publication: BMC Biology
publication_identifier:
  issn:
  - 1741-7007
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: The mitochondrial carrier pathway transports non-canonical substrates with
  an odd number of transmembrane segments
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 18
year: '2020'
...
---
_id: '8653'
abstract:
- lang: eng
  text: "Mutations are the raw material of evolution and come in many different flavors.
    Point mutations change a single letter in the DNA sequence, while copy number
    mutations like duplications or deletions add or remove many letters of the DNA
    sequence simultaneously.  Each type of mutation exhibits specific properties like
    its rate of formation and reversal. \r\nGene expression is a fundamental phenotype
    that can be altered by both, point and copy number mutations. The following thesis
    is concerned with the dynamics of gene expression evolution and how it is affected
    by the properties exhibited by point and copy number mutations. Specifically,
    we are considering i) copy number mutations during adaptation to fluctuating environments
    and ii) the interaction of copy number and point mutations during adaptation to
    constant environments.  "
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Isabella
  full_name: Tomanek, Isabella
  id: 3981F020-F248-11E8-B48F-1D18A9856A87
  last_name: Tomanek
  orcid: 0000-0001-6197-363X
citation:
  ama: Tomanek I. The evolution of gene expression by copy number and point mutations.
    2020. doi:<a href="https://doi.org/10.15479/AT:ISTA:8653">10.15479/AT:ISTA:8653</a>
  apa: Tomanek, I. (2020). <i>The evolution of gene expression by copy number and
    point mutations</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:8653">https://doi.org/10.15479/AT:ISTA:8653</a>
  chicago: Tomanek, Isabella. “The Evolution of Gene Expression by Copy Number and
    Point Mutations.” Institute of Science and Technology Austria, 2020. <a href="https://doi.org/10.15479/AT:ISTA:8653">https://doi.org/10.15479/AT:ISTA:8653</a>.
  ieee: I. Tomanek, “The evolution of gene expression by copy number and point mutations,”
    Institute of Science and Technology Austria, 2020.
  ista: Tomanek I. 2020. The evolution of gene expression by copy number and point
    mutations. Institute of Science and Technology Austria.
  mla: Tomanek, Isabella. <i>The Evolution of Gene Expression by Copy Number and Point
    Mutations</i>. Institute of Science and Technology Austria, 2020, doi:<a href="https://doi.org/10.15479/AT:ISTA:8653">10.15479/AT:ISTA:8653</a>.
  short: I. Tomanek, The Evolution of Gene Expression by Copy Number and Point Mutations,
    Institute of Science and Technology Austria, 2020.
date_created: 2020-10-13T13:02:33Z
date_published: 2020-10-13T00:00:00Z
date_updated: 2023-09-07T13:22:42Z
day: '13'
ddc:
- '576'
degree_awarded: PhD
department:
- _id: CaGu
doi: 10.15479/AT:ISTA:8653
file:
- access_level: closed
  checksum: c01d9f59794b4b70528f37637c17ad02
  content_type: application/vnd.openxmlformats-officedocument.wordprocessingml.document
  creator: itomanek
  date_created: 2020-10-16T12:14:21Z
  date_updated: 2021-10-20T22:30:03Z
  embargo_to: open_access
  file_id: '8666'
  file_name: Thesis_ITomanek_final_201016.docx
  file_size: 25131884
  relation: source_file
- access_level: open_access
  checksum: f8edbc3b0f81a780e13ca1e561d42d8b
  content_type: application/pdf
  creator: itomanek
  date_created: 2020-10-16T12:14:21Z
  date_updated: 2021-10-20T22:30:03Z
  embargo: 2021-10-19
  file_id: '8667'
  file_name: Thesis_ITomanek_final_201016.pdf
  file_size: 15405675
  relation: main_file
file_date_updated: 2021-10-20T22:30:03Z
has_accepted_license: '1'
keyword:
- duplication
- amplification
- promoter
- CNV
- AMGET
- experimental evolution
- Escherichia coli
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: '117'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '7652'
    relation: research_data
    status: public
status: public
supervisor:
- first_name: Calin C
  full_name: Guet, Calin C
  id: 47F8433E-F248-11E8-B48F-1D18A9856A87
  last_name: Guet
  orcid: 0000-0001-6220-2052
title: The evolution of gene expression by copy number and point mutations
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2020'
...
---
_id: '8767'
abstract:
- lang: eng
  text: Resources are rarely distributed uniformly within a population. Heterogeneity
    in the concentration of a drug, the quality of breeding sites, or wealth can all
    affect evolutionary dynamics. In this study, we represent a collection of properties
    affecting the fitness at a given location using a color. A green node is rich
    in resources while a red node is poorer. More colors can represent a broader spectrum
    of resource qualities. For a population evolving according to the birth-death
    Moran model, the first question we address is which structures, identified by
    graph connectivity and graph coloring, are evolutionarily equivalent. We prove
    that all properly two-colored, undirected, regular graphs are evolutionarily equivalent
    (where “properly colored” means that no two neighbors have the same color). We
    then compare the effects of background heterogeneity on properly two-colored graphs
    to those with alternative schemes in which the colors are permuted. Finally, we
    discuss dynamic coloring as a model for spatiotemporal resource fluctuations,
    and we illustrate that random dynamic colorings often diminish the effects of
    background heterogeneity relative to a proper two-coloring.
acknowledgement: 'We thank Igor Erovenko for many helpful comments on an earlier version
  of this paper. : Army Research Laboratory (grant W911NF-18-2-0265) (M.A.N.); the
  Bill & Melinda Gates Foundation (grant OPP1148627) (M.A.N.); the NVIDIA Corporation
  (A.M.). The funders had no role in study design, data collection and analysis, decision
  to publish, or preparation of the manuscript.'
article_number: e1008402
article_processing_charge: No
article_type: original
author:
- first_name: Kamran
  full_name: Kaveh, Kamran
  last_name: Kaveh
- first_name: Alex
  full_name: McAvoy, Alex
  last_name: McAvoy
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin A.
  full_name: Nowak, Martin A.
  last_name: Nowak
citation:
  ama: Kaveh K, McAvoy A, Chatterjee K, Nowak MA. The Moran process on 2-chromatic
    graphs. <i>PLOS Computational Biology</i>. 2020;16(11). doi:<a href="https://doi.org/10.1371/journal.pcbi.1008402">10.1371/journal.pcbi.1008402</a>
  apa: Kaveh, K., McAvoy, A., Chatterjee, K., &#38; Nowak, M. A. (2020). The Moran
    process on 2-chromatic graphs. <i>PLOS Computational Biology</i>. Public Library
    of Science. <a href="https://doi.org/10.1371/journal.pcbi.1008402">https://doi.org/10.1371/journal.pcbi.1008402</a>
  chicago: Kaveh, Kamran, Alex McAvoy, Krishnendu Chatterjee, and Martin A. Nowak.
    “The Moran Process on 2-Chromatic Graphs.” <i>PLOS Computational Biology</i>.
    Public Library of Science, 2020. <a href="https://doi.org/10.1371/journal.pcbi.1008402">https://doi.org/10.1371/journal.pcbi.1008402</a>.
  ieee: K. Kaveh, A. McAvoy, K. Chatterjee, and M. A. Nowak, “The Moran process on
    2-chromatic graphs,” <i>PLOS Computational Biology</i>, vol. 16, no. 11. Public
    Library of Science, 2020.
  ista: Kaveh K, McAvoy A, Chatterjee K, Nowak MA. 2020. The Moran process on 2-chromatic
    graphs. PLOS Computational Biology. 16(11), e1008402.
  mla: Kaveh, Kamran, et al. “The Moran Process on 2-Chromatic Graphs.” <i>PLOS Computational
    Biology</i>, vol. 16, no. 11, e1008402, Public Library of Science, 2020, doi:<a
    href="https://doi.org/10.1371/journal.pcbi.1008402">10.1371/journal.pcbi.1008402</a>.
  short: K. Kaveh, A. McAvoy, K. Chatterjee, M.A. Nowak, PLOS Computational Biology
    16 (2020).
date_created: 2020-11-18T07:20:23Z
date_published: 2020-11-05T00:00:00Z
date_updated: 2023-08-22T12:49:18Z
day: '05'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1371/journal.pcbi.1008402
external_id:
  isi:
  - '000591317200004'
file:
- access_level: open_access
  checksum: 555456dd0e47bcf9e0994bcb95577e88
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-18T07:26:10Z
  date_updated: 2020-11-18T07:26:10Z
  file_id: '8768'
  file_name: 2020_PlosCompBio_Kaveh.pdf
  file_size: 2498594
  relation: main_file
  success: 1
file_date_updated: 2020-11-18T07:26:10Z
has_accepted_license: '1'
intvolume: '        16'
isi: 1
issue: '11'
keyword:
- Ecology
- Modelling and Simulation
- Computational Theory and Mathematics
- Genetics
- Ecology
- Evolution
- Behavior and Systematics
- Molecular Biology
- Cellular and Molecular Neuroscience
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
publication: PLOS Computational Biology
publication_identifier:
  eissn:
  - 1553-7358
  issn:
  - 1553-734X
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: The Moran process on 2-chromatic graphs
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 16
year: '2020'
...
---
_id: '12189'
abstract:
- lang: eng
  text: Meiotic crossovers (COs) are important for reshuffling genetic information
    between homologous chromosomes and they are essential for their correct segregation.
    COs are unevenly distributed along chromosomes and the underlying mechanisms controlling
    CO localization are not well understood. We previously showed that meiotic COs
    are mis-localized in the absence of AXR1, an enzyme involved in the neddylation/rubylation
    protein modification pathway in Arabidopsis thaliana. Here, we report that in
    axr1-/-, male meiocytes show a strong defect in chromosome pairing whereas the
    formation of the telomere bouquet is not affected. COs are also redistributed
    towards subtelomeric chromosomal ends where they frequently form clusters, in
    contrast to large central regions depleted in recombination. The CO suppressed
    regions correlate with DNA hypermethylation of transposable elements (TEs) in
    the CHH context in axr1-/- meiocytes. Through examining somatic methylomes, we
    found axr1-/- affects DNA methylation in a plant, causing hypermethylation in
    all sequence contexts (CG, CHG and CHH) in TEs. Impairment of the main pathways
    involved in DNA methylation is epistatic over axr1-/- for DNA methylation in somatic
    cells but does not restore regular chromosome segregation during meiosis. Collectively,
    our findings reveal that the neddylation pathway not only regulates hormonal perception
    and CO distribution but is also, directly or indirectly, a major limiting pathway
    of TE DNA methylation in somatic cells.
acknowledgement: The authors wish to thank Cécile Raynaud, Eric Jenczewski, Rajeev
  Kumar, Raphaël Mercier and Jean Molinier for critical reading of the manuscript.
article_number: e1008894
article_processing_charge: No
article_type: original
author:
- first_name: Nicolas
  full_name: Christophorou, Nicolas
  last_name: Christophorou
- first_name: Wenjing
  full_name: She, Wenjing
  last_name: She
- first_name: Jincheng
  full_name: Long, Jincheng
  last_name: Long
- first_name: Aurélie
  full_name: Hurel, Aurélie
  last_name: Hurel
- first_name: Sébastien
  full_name: Beaubiat, Sébastien
  last_name: Beaubiat
- first_name: Yassir
  full_name: Idir, Yassir
  last_name: Idir
- first_name: Marina
  full_name: Tagliaro-Jahns, Marina
  last_name: Tagliaro-Jahns
- first_name: Aurélie
  full_name: Chambon, Aurélie
  last_name: Chambon
- first_name: Victor
  full_name: Solier, Victor
  last_name: Solier
- first_name: Daniel
  full_name: Vezon, Daniel
  last_name: Vezon
- first_name: Mathilde
  full_name: Grelon, Mathilde
  last_name: Grelon
- first_name: Xiaoqi
  full_name: Feng, Xiaoqi
  id: e0164712-22ee-11ed-b12a-d80fcdf35958
  last_name: Feng
  orcid: 0000-0002-4008-1234
- first_name: Nicolas
  full_name: Bouché, Nicolas
  last_name: Bouché
- first_name: Christine
  full_name: Mézard, Christine
  last_name: Mézard
citation:
  ama: Christophorou N, She W, Long J, et al. AXR1 affects DNA methylation independently
    of its role in regulating meiotic crossover localization. <i>PLOS Genetics</i>.
    2020;16(6). doi:<a href="https://doi.org/10.1371/journal.pgen.1008894">10.1371/journal.pgen.1008894</a>
  apa: Christophorou, N., She, W., Long, J., Hurel, A., Beaubiat, S., Idir, Y., …
    Mézard, C. (2020). AXR1 affects DNA methylation independently of its role in regulating
    meiotic crossover localization. <i>PLOS Genetics</i>. Public Library of Science
    (PLoS). <a href="https://doi.org/10.1371/journal.pgen.1008894">https://doi.org/10.1371/journal.pgen.1008894</a>
  chicago: Christophorou, Nicolas, Wenjing She, Jincheng Long, Aurélie Hurel, Sébastien
    Beaubiat, Yassir Idir, Marina Tagliaro-Jahns, et al. “AXR1 Affects DNA Methylation
    Independently of Its Role in Regulating Meiotic Crossover Localization.” <i>PLOS
    Genetics</i>. Public Library of Science (PLoS), 2020. <a href="https://doi.org/10.1371/journal.pgen.1008894">https://doi.org/10.1371/journal.pgen.1008894</a>.
  ieee: N. Christophorou <i>et al.</i>, “AXR1 affects DNA methylation independently
    of its role in regulating meiotic crossover localization,” <i>PLOS Genetics</i>,
    vol. 16, no. 6. Public Library of Science (PLoS), 2020.
  ista: Christophorou N, She W, Long J, Hurel A, Beaubiat S, Idir Y, Tagliaro-Jahns
    M, Chambon A, Solier V, Vezon D, Grelon M, Feng X, Bouché N, Mézard C. 2020. AXR1
    affects DNA methylation independently of its role in regulating meiotic crossover
    localization. PLOS Genetics. 16(6), e1008894.
  mla: Christophorou, Nicolas, et al. “AXR1 Affects DNA Methylation Independently
    of Its Role in Regulating Meiotic Crossover Localization.” <i>PLOS Genetics</i>,
    vol. 16, no. 6, e1008894, Public Library of Science (PLoS), 2020, doi:<a href="https://doi.org/10.1371/journal.pgen.1008894">10.1371/journal.pgen.1008894</a>.
  short: N. Christophorou, W. She, J. Long, A. Hurel, S. Beaubiat, Y. Idir, M. Tagliaro-Jahns,
    A. Chambon, V. Solier, D. Vezon, M. Grelon, X. Feng, N. Bouché, C. Mézard, PLOS
    Genetics 16 (2020).
date_created: 2023-01-16T09:16:10Z
date_published: 2020-06-29T00:00:00Z
date_updated: 2023-05-08T10:54:39Z
day: '29'
department:
- _id: XiFe
doi: 10.1371/journal.pgen.1008894
extern: '1'
external_id:
  pmid:
  - '32598340'
intvolume: '        16'
issue: '6'
keyword:
- Cancer Research
- Genetics (clinical)
- Genetics
- Molecular Biology
- Ecology
- Evolution
- Behavior and Systematics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7351236/
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
publication: PLOS Genetics
publication_identifier:
  issn:
  - 1553-7404
publication_status: published
publisher: Public Library of Science (PLoS)
quality_controlled: '1'
scopus_import: '1'
status: public
title: AXR1 affects DNA methylation independently of its role in regulating meiotic
  crossover localization
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2020'
...
---
_id: '11499'
abstract:
- lang: eng
  text: Deep optical spectroscopic surveys of galaxies provide a unique opportunity
    to investigate rest-frame ultra-violet (UV) emission line properties of galaxies
    at z ∼ 2 − 4.5. Here we combine VLT/MUSE Guaranteed Time Observations of the Hubble
    Deep Field South, Ultra Deep Field, COSMOS, and several quasar fields with other
    publicly available data from VLT/VIMOS and VLT/FORS2 to construct a catalogue
    of He II λ1640 emitters at z ≳ 2. The deepest areas of our MUSE pointings reach
    a 3σ line flux limit of 3.1 × 10−19 erg s−1 cm−2. After discarding broad-line
    active galactic nuclei, we find 13 He II λ1640 detections from MUSE with a median
    MUV = −20.1 and 21 tentative He II λ1640 detections from other public surveys.
    Excluding Lyα, all except two galaxies in our sample show at least one other rest-UV
    emission line, with C III] λ1907, λ1909 being the most prominent. We use multi-wavelength
    data available in the Hubble legacy fields to derive basic galaxy properties of
    our sample through spectral energy distribution fitting techniques. Taking advantage
    of the high-quality spectra obtained by MUSE (∼10 − 30 h of exposure time per
    pointing), we use photo-ionisation models to study the rest-UV emission line diagnostics
    of the He II λ1640 emitters. Line ratios of our sample can be reproduced by moderately
    sub-solar photo-ionisation models, however, we find that including effects of
    binary stars lead to degeneracies in most free parameters. Even after considering
    extra ionising photons produced by extreme sub-solar metallicity binary stellar
    models, photo-ionisation models are unable to reproduce rest-frame He II λ1640
    equivalent widths (∼0.2 − 10 Å), thus additional mechanisms are necessary in models
    to match the observed He II λ1640 properties.
acknowledgement: 'The authors wish to thank the referee for constructive comments
  that improved the paper substantially. We thank the BPASS team for making the stellar
  population models available. We thank Elizabeth Stanway, Claus Leitherer, Daniel
  Schaerer, Jorick Vink, and Nell Byler for insightful discussions. We thank the Lorentz
  Centre and the scientific organizers of the Characterizing galaxies with spectroscopy
  with a view for JWST workshop held at the Lorentz Centre in 2017 October, which
  promoted useful discussions in the wider community. TN, JB, and RB acknowledges
  the Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO) top grant TOP1.16.057.
  AF acknowledges support from the ERC via an Advanced Grant under grant agreement
  no. 339659-MUSICOS. JB acknowledges support by Fundação para a Ciência e a Tecnologia
  (FCT) through national funds (UID/FIS/04434/2013) and Investigador FCT contract
  IF/01654/2014/CP1215/CT0003, and by FEDER through COMPETE2020 (POCI-01-0145-FEDER-007672).
  JR acknowledges support from the ERC Starting grant 336736 (CALENDS). This research
  made use of astropy (http://www.astropy.org) a community-developed core Python package
  for Astronomy (Astropy Collaboration 2013, 2018) and pandas (McKinney 2010). Figures
  were generated using matplotlib (Hunter 2007) and seaborn (https://seaborn.pydata.org).
  Facilities: VLT (MUSE).'
article_number: A89
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Themiya
  full_name: Nanayakkara, Themiya
  last_name: Nanayakkara
- first_name: Jarle
  full_name: Brinchmann, Jarle
  last_name: Brinchmann
- first_name: Leindert
  full_name: Boogaard, Leindert
  last_name: Boogaard
- first_name: Rychard
  full_name: Bouwens, Rychard
  last_name: Bouwens
- first_name: Sebastiano
  full_name: Cantalupo, Sebastiano
  last_name: Cantalupo
- first_name: Anna
  full_name: Feltre, Anna
  last_name: Feltre
- first_name: Wolfram
  full_name: Kollatschny, Wolfram
  last_name: Kollatschny
- first_name: Raffaella Anna
  full_name: Marino, Raffaella Anna
  last_name: Marino
- first_name: Michael
  full_name: Maseda, Michael
  last_name: Maseda
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Mieke
  full_name: Paalvast, Mieke
  last_name: Paalvast
- first_name: Johan
  full_name: Richard, Johan
  last_name: Richard
- first_name: Anne
  full_name: Verhamme, Anne
  last_name: Verhamme
citation:
  ama: Nanayakkara T, Brinchmann J, Boogaard L, et al. Exploring He II λ1640 emission
    line properties at z ∼2−4. <i>Astronomy &#38; Astrophysics</i>. 2019;648. doi:<a
    href="https://doi.org/10.1051/0004-6361/201834565">10.1051/0004-6361/201834565</a>
  apa: Nanayakkara, T., Brinchmann, J., Boogaard, L., Bouwens, R., Cantalupo, S.,
    Feltre, A., … Verhamme, A. (2019). Exploring He II λ1640 emission line properties
    at z ∼2−4. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/201834565">https://doi.org/10.1051/0004-6361/201834565</a>
  chicago: Nanayakkara, Themiya, Jarle Brinchmann, Leindert Boogaard, Rychard Bouwens,
    Sebastiano Cantalupo, Anna Feltre, Wolfram Kollatschny, et al. “Exploring He II Λ1640
    Emission Line Properties at z ∼2−4.” <i>Astronomy &#38; Astrophysics</i>. EDP
    Sciences, 2019. <a href="https://doi.org/10.1051/0004-6361/201834565">https://doi.org/10.1051/0004-6361/201834565</a>.
  ieee: T. Nanayakkara <i>et al.</i>, “Exploring He II λ1640 emission line properties
    at z ∼2−4,” <i>Astronomy &#38; Astrophysics</i>, vol. 648. EDP Sciences, 2019.
  ista: Nanayakkara T, Brinchmann J, Boogaard L, Bouwens R, Cantalupo S, Feltre A,
    Kollatschny W, Marino RA, Maseda M, Matthee JJ, Paalvast M, Richard J, Verhamme
    A. 2019. Exploring He II λ1640 emission line properties at z ∼2−4. Astronomy &#38;
    Astrophysics. 648, A89.
  mla: Nanayakkara, Themiya, et al. “Exploring He II Λ1640 Emission Line Properties
    at z ∼2−4.” <i>Astronomy &#38; Astrophysics</i>, vol. 648, A89, EDP Sciences,
    2019, doi:<a href="https://doi.org/10.1051/0004-6361/201834565">10.1051/0004-6361/201834565</a>.
  short: T. Nanayakkara, J. Brinchmann, L. Boogaard, R. Bouwens, S. Cantalupo, A.
    Feltre, W. Kollatschny, R.A. Marino, M. Maseda, J.J. Matthee, M. Paalvast, J.
    Richard, A. Verhamme, Astronomy &#38; Astrophysics 648 (2019).
date_created: 2022-07-06T09:07:06Z
date_published: 2019-04-16T00:00:00Z
date_updated: 2022-07-19T09:36:08Z
day: '16'
doi: 10.1051/0004-6361/201834565
extern: '1'
external_id:
  arxiv:
  - '1902.05960'
intvolume: '       648'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
- 'galaxies: ISM / galaxies: star formation / galaxies: evolution / galaxies: high-redshift'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1902.05960
month: '04'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1051/0004-6361/201834565e
scopus_import: '1'
status: public
title: Exploring He II λ1640 emission line properties at z ∼2−4
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 648
year: '2019'
...
