---
_id: '11067'
abstract:
- lang: eng
  text: Neural progenitor cells (NeuPCs) possess a unique nuclear architecture that
    changes during differentiation. Nucleoporins are linked with cell-type-specific
    gene regulation, coupling physical changes in nuclear structure to transcriptional
    output; but, whether and how they coordinate with key fate-determining transcription
    factors is unclear. Here we show that the nucleoporin Nup153 interacts with Sox2
    in adult NeuPCs, where it is indispensable for their maintenance and controls
    neuronal differentiation. Genome-wide analyses show that Nup153 and Sox2 bind
    and co-regulate hundreds of genes. Binding of Nup153 to gene promoters or transcriptional
    end sites correlates with increased or decreased gene expression, respectively,
    and inhibiting Nup153 expression alters open chromatin configurations at its target
    genes, disrupts genomic localization of Sox2, and promotes differentiation in
    vitro and a gliogenic fate switch in vivo. Together, these findings reveal that
    nuclear structural proteins may exert bimodal transcriptional effects to control
    cell fate.
article_processing_charge: No
article_type: original
author:
- first_name: Tomohisa
  full_name: Toda, Tomohisa
  last_name: Toda
- first_name: Jonathan Y.
  full_name: Hsu, Jonathan Y.
  last_name: Hsu
- first_name: Sara B.
  full_name: Linker, Sara B.
  last_name: Linker
- first_name: Lauren
  full_name: Hu, Lauren
  last_name: Hu
- first_name: Simon T.
  full_name: Schafer, Simon T.
  last_name: Schafer
- first_name: Jerome
  full_name: Mertens, Jerome
  last_name: Mertens
- first_name: Filipe V.
  full_name: Jacinto, Filipe V.
  last_name: Jacinto
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
- first_name: Fred H.
  full_name: Gage, Fred H.
  last_name: Gage
citation:
  ama: Toda T, Hsu JY, Linker SB, et al. Nup153 interacts with Sox2 to enable bimodal
    gene regulation and maintenance of neural progenitor cells. <i>Cell Stem Cell</i>.
    2017;21(5):618-634.e7. doi:<a href="https://doi.org/10.1016/j.stem.2017.08.012">10.1016/j.stem.2017.08.012</a>
  apa: Toda, T., Hsu, J. Y., Linker, S. B., Hu, L., Schafer, S. T., Mertens, J., …
    Gage, F. H. (2017). Nup153 interacts with Sox2 to enable bimodal gene regulation
    and maintenance of neural progenitor cells. <i>Cell Stem Cell</i>. Elsevier. <a
    href="https://doi.org/10.1016/j.stem.2017.08.012">https://doi.org/10.1016/j.stem.2017.08.012</a>
  chicago: Toda, Tomohisa, Jonathan Y. Hsu, Sara B. Linker, Lauren Hu, Simon T. Schafer,
    Jerome Mertens, Filipe V. Jacinto, Martin Hetzer, and Fred H. Gage. “Nup153 Interacts
    with Sox2 to Enable Bimodal Gene Regulation and Maintenance of Neural Progenitor
    Cells.” <i>Cell Stem Cell</i>. Elsevier, 2017. <a href="https://doi.org/10.1016/j.stem.2017.08.012">https://doi.org/10.1016/j.stem.2017.08.012</a>.
  ieee: T. Toda <i>et al.</i>, “Nup153 interacts with Sox2 to enable bimodal gene
    regulation and maintenance of neural progenitor cells,” <i>Cell Stem Cell</i>,
    vol. 21, no. 5. Elsevier, p. 618–634.e7, 2017.
  ista: Toda T, Hsu JY, Linker SB, Hu L, Schafer ST, Mertens J, Jacinto FV, Hetzer
    M, Gage FH. 2017. Nup153 interacts with Sox2 to enable bimodal gene regulation
    and maintenance of neural progenitor cells. Cell Stem Cell. 21(5), 618–634.e7.
  mla: Toda, Tomohisa, et al. “Nup153 Interacts with Sox2 to Enable Bimodal Gene Regulation
    and Maintenance of Neural Progenitor Cells.” <i>Cell Stem Cell</i>, vol. 21, no.
    5, Elsevier, 2017, p. 618–634.e7, doi:<a href="https://doi.org/10.1016/j.stem.2017.08.012">10.1016/j.stem.2017.08.012</a>.
  short: T. Toda, J.Y. Hsu, S.B. Linker, L. Hu, S.T. Schafer, J. Mertens, F.V. Jacinto,
    M. Hetzer, F.H. Gage, Cell Stem Cell 21 (2017) 618–634.e7.
date_created: 2022-04-07T07:46:12Z
date_published: 2017-11-02T00:00:00Z
date_updated: 2022-07-18T08:33:07Z
day: '02'
doi: 10.1016/j.stem.2017.08.012
extern: '1'
external_id:
  pmid:
  - '28919367'
intvolume: '        21'
issue: '5'
keyword:
- Cell Biology
- Genetics
- Molecular Medicine
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.stem.2017.08.012
month: '11'
oa: 1
oa_version: Published Version
page: 618-634.e7
pmid: 1
publication: Cell Stem Cell
publication_identifier:
  issn:
  - 1934-5909
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nup153 interacts with Sox2 to enable bimodal gene regulation and maintenance
  of neural progenitor cells
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 21
year: '2017'
...
---
_id: '5560'
abstract:
- lang: eng
  text: "This repository contains the data collected for the manuscript \"Biased partitioning
    of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity\".\r\nThe
    data is compressed into a single archive. Within the archive, different folders
    correspond to figures of the main text and the SI of the related publication.\r\nData
    is saved as plain text, with each folder containing a separate readme file describing
    the format. Typically, the data is from fluorescence microscopy measurements of
    single cells growing in a microfluidic \"mother machine\" device, and consists
    of relevant values (primarily arbitrary unit or normalized fluorescence measurements,
    and division times / growth rates) after raw microscopy images have been processed,
    segmented, and their features extracted, as described in the methods section of
    the related publication."
article_processing_charge: No
author:
- first_name: Tobias
  full_name: Bergmiller, Tobias
  id: 2C471CFA-F248-11E8-B48F-1D18A9856A87
  last_name: Bergmiller
  orcid: 0000-0001-5396-4346
- first_name: Anna M
  full_name: Andersson, Anna M
  id: 2B8A40DA-F248-11E8-B48F-1D18A9856A87
  last_name: Andersson
  orcid: 0000-0003-2912-6769
- first_name: Kathrin
  full_name: Tomasek, Kathrin
  id: 3AEC8556-F248-11E8-B48F-1D18A9856A87
  last_name: Tomasek
  orcid: 0000-0003-3768-877X
- first_name: Enrique
  full_name: Balleza, Enrique
  last_name: Balleza
- first_name: Daniel
  full_name: Kiviet, Daniel
  last_name: Kiviet
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
- first_name: Gasper
  full_name: Tkacik, Gasper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkacik
  orcid: 0000-0002-6699-1455
- first_name: Calin C
  full_name: Guet, Calin C
  id: 47F8433E-F248-11E8-B48F-1D18A9856A87
  last_name: Guet
  orcid: 0000-0001-6220-2052
citation:
  ama: Bergmiller T, Andersson AM, Tomasek K, et al. Biased partitioning of the multi-drug
    efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity. 2017. doi:<a
    href="https://doi.org/10.15479/AT:ISTA:53">10.15479/AT:ISTA:53</a>
  apa: Bergmiller, T., Andersson, A. M., Tomasek, K., Balleza, E., Kiviet, D., Hauschild,
    R., … Guet, C. C. (2017). Biased partitioning of the multi-drug efflux pump AcrAB-TolC
    underlies long-lived phenotypic heterogeneity. Institute of Science and Technology
    Austria. <a href="https://doi.org/10.15479/AT:ISTA:53">https://doi.org/10.15479/AT:ISTA:53</a>
  chicago: Bergmiller, Tobias, Anna M Andersson, Kathrin Tomasek, Enrique Balleza,
    Daniel Kiviet, Robert Hauschild, Gašper Tkačik, and Calin C Guet. “Biased Partitioning
    of the Multi-Drug Efflux Pump AcrAB-TolC Underlies Long-Lived Phenotypic Heterogeneity.”
    Institute of Science and Technology Austria, 2017. <a href="https://doi.org/10.15479/AT:ISTA:53">https://doi.org/10.15479/AT:ISTA:53</a>.
  ieee: T. Bergmiller <i>et al.</i>, “Biased partitioning of the multi-drug efflux
    pump AcrAB-TolC underlies long-lived phenotypic heterogeneity.” Institute of Science
    and Technology Austria, 2017.
  ista: Bergmiller T, Andersson AM, Tomasek K, Balleza E, Kiviet D, Hauschild R, Tkačik
    G, Guet CC. 2017. Biased partitioning of the multi-drug efflux pump AcrAB-TolC
    underlies long-lived phenotypic heterogeneity, Institute of Science and Technology
    Austria, <a href="https://doi.org/10.15479/AT:ISTA:53">10.15479/AT:ISTA:53</a>.
  mla: Bergmiller, Tobias, et al. <i>Biased Partitioning of the Multi-Drug Efflux
    Pump AcrAB-TolC Underlies Long-Lived Phenotypic Heterogeneity</i>. Institute of
    Science and Technology Austria, 2017, doi:<a href="https://doi.org/10.15479/AT:ISTA:53">10.15479/AT:ISTA:53</a>.
  short: T. Bergmiller, A.M. Andersson, K. Tomasek, E. Balleza, D. Kiviet, R. Hauschild,
    G. Tkačik, C.C. Guet, (2017).
datarep_id: '53'
date_created: 2018-12-12T12:31:32Z
date_published: 2017-03-10T00:00:00Z
date_updated: 2024-02-21T13:49:00Z
day: '10'
ddc:
- '571'
department:
- _id: CaGu
- _id: GaTk
- _id: Bio
doi: 10.15479/AT:ISTA:53
file:
- access_level: open_access
  checksum: d77859af757ac8025c50c7b12b52eaf3
  content_type: application/zip
  creator: system
  date_created: 2018-12-12T13:02:38Z
  date_updated: 2020-07-14T12:47:03Z
  file_id: '5603'
  file_name: IST-2017-53-v1+1_Data_MDE.zip
  file_size: 6773204
  relation: main_file
file_date_updated: 2020-07-14T12:47:03Z
has_accepted_license: '1'
keyword:
- single cell microscopy
- mother machine microfluidic device
- AcrAB-TolC pump
- multi-drug efflux
- Escherichia coli
month: '03'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '665'
    relation: research_paper
    status: public
status: public
title: Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived
  phenotypic heterogeneity
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2017'
...
---
_id: '5570'
abstract:
- lang: eng
  text: Matlab script to calculate the forward migration indexes (<d_y>/<L>) from
    TrackMate spot-statistics files.
article_processing_charge: No
author:
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
citation:
  ama: Hauschild R. Forward migration indexes. 2017. doi:<a href="https://doi.org/10.15479/AT:ISTA:75">10.15479/AT:ISTA:75</a>
  apa: Hauschild, R. (2017). Forward migration indexes. Institute of Science and Technology
    Austria. <a href="https://doi.org/10.15479/AT:ISTA:75">https://doi.org/10.15479/AT:ISTA:75</a>
  chicago: Hauschild, Robert. “Forward Migration Indexes.” Institute of Science and
    Technology Austria, 2017. <a href="https://doi.org/10.15479/AT:ISTA:75">https://doi.org/10.15479/AT:ISTA:75</a>.
  ieee: R. Hauschild, “Forward migration indexes.” Institute of Science and Technology
    Austria, 2017.
  ista: Hauschild R. 2017. Forward migration indexes, Institute of Science and Technology
    Austria, <a href="https://doi.org/10.15479/AT:ISTA:75">10.15479/AT:ISTA:75</a>.
  mla: Hauschild, Robert. <i>Forward Migration Indexes</i>. Institute of Science and
    Technology Austria, 2017, doi:<a href="https://doi.org/10.15479/AT:ISTA:75">10.15479/AT:ISTA:75</a>.
  short: R. Hauschild, (2017).
datarep_id: '75'
date_created: 2018-12-12T12:31:35Z
date_published: 2017-10-04T00:00:00Z
date_updated: 2024-02-21T13:47:14Z
day: '04'
ddc:
- '570'
department:
- _id: Bio
doi: 10.15479/AT:ISTA:75
file:
- access_level: open_access
  checksum: cb7a2fa622460eca6231d659ce590e32
  content_type: application/octet-stream
  creator: system
  date_created: 2018-12-12T13:02:29Z
  date_updated: 2020-07-14T12:47:04Z
  file_id: '5596'
  file_name: IST-2017-75-v1+1_FMI.m
  file_size: 799
  relation: main_file
file_date_updated: 2020-07-14T12:47:04Z
has_accepted_license: '1'
keyword:
- Cell migration
- tracking
- forward migration index
- FMI
month: '10'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
status: public
title: Forward migration indexes
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2017'
...
---
_id: '11069'
abstract:
- lang: eng
  text: Repeated rounds of nuclear envelope (NE) rupture and repair have been observed
    in laminopathy and cancer cells and result in intermittent loss of nucleus compartmentalization.
    Currently, the causes of NE rupture are unclear. Here, we show that NE rupture
    in cancer cells relies on the assembly of contractile actin bundles that interact
    with the nucleus via the linker of nucleoskeleton and cytoskeleton (LINC) complex.
    We found that the loss of actin bundles or the LINC complex did not rescue nuclear
    lamina defects, a previously identified determinant of nuclear membrane stability,
    but did decrease the number and size of chromatin hernias. Finally, NE rupture
    inhibition could be rescued in cells treated with actin-depolymerizing drugs by
    mechanically constraining nucleus height. These data suggest a model of NE rupture
    where weak membrane areas, caused by defects in lamina organization, rupture because
    of an increase in intranuclear pressure from actin-based nucleus confinement.
article_processing_charge: No
article_type: original
author:
- first_name: Emily M.
  full_name: Hatch, Emily M.
  last_name: Hatch
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Hatch EM, Hetzer M. Nuclear envelope rupture is induced by actin-based nucleus
    confinement. <i>Journal of Cell Biology</i>. 2016;215(1):27-36. doi:<a href="https://doi.org/10.1083/jcb.201603053">10.1083/jcb.201603053</a>
  apa: Hatch, E. M., &#38; Hetzer, M. (2016). Nuclear envelope rupture is induced
    by actin-based nucleus confinement. <i>Journal of Cell Biology</i>. Rockefeller
    University Press. <a href="https://doi.org/10.1083/jcb.201603053">https://doi.org/10.1083/jcb.201603053</a>
  chicago: Hatch, Emily M., and Martin Hetzer. “Nuclear Envelope Rupture Is Induced
    by Actin-Based Nucleus Confinement.” <i>Journal of Cell Biology</i>. Rockefeller
    University Press, 2016. <a href="https://doi.org/10.1083/jcb.201603053">https://doi.org/10.1083/jcb.201603053</a>.
  ieee: E. M. Hatch and M. Hetzer, “Nuclear envelope rupture is induced by actin-based
    nucleus confinement,” <i>Journal of Cell Biology</i>, vol. 215, no. 1. Rockefeller
    University Press, pp. 27–36, 2016.
  ista: Hatch EM, Hetzer M. 2016. Nuclear envelope rupture is induced by actin-based
    nucleus confinement. Journal of Cell Biology. 215(1), 27–36.
  mla: Hatch, Emily M., and Martin Hetzer. “Nuclear Envelope Rupture Is Induced by
    Actin-Based Nucleus Confinement.” <i>Journal of Cell Biology</i>, vol. 215, no.
    1, Rockefeller University Press, 2016, pp. 27–36, doi:<a href="https://doi.org/10.1083/jcb.201603053">10.1083/jcb.201603053</a>.
  short: E.M. Hatch, M. Hetzer, Journal of Cell Biology 215 (2016) 27–36.
date_created: 2022-04-07T07:47:42Z
date_published: 2016-10-03T00:00:00Z
date_updated: 2022-07-18T08:33:47Z
day: '03'
doi: 10.1083/jcb.201603053
extern: '1'
external_id:
  pmid:
  - '27697922'
intvolume: '       215'
issue: '1'
keyword:
- Cell Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1083/jcb.201603053
month: '10'
oa: 1
oa_version: Published Version
page: 27-36
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  issn:
  - 0021-9525
  - 1540-8140
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nuclear envelope rupture is induced by actin-based nucleus confinement
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 215
year: '2016'
...
---
_id: '5555'
abstract:
- lang: eng
  text: This FIJI script calculates the population average of the migration speed
    as a function of time of all cells from wide field microscopy movies.
article_processing_charge: No
author:
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
citation:
  ama: Hauschild R. Fiji script to determine average speed and direction of migration
    of cells. 2016. doi:<a href="https://doi.org/10.15479/AT:ISTA:44">10.15479/AT:ISTA:44</a>
  apa: Hauschild, R. (2016). Fiji script to determine average speed and direction
    of migration of cells. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:44">https://doi.org/10.15479/AT:ISTA:44</a>
  chicago: Hauschild, Robert. “Fiji Script to Determine Average Speed and Direction
    of Migration of Cells.” Institute of Science and Technology Austria, 2016. <a
    href="https://doi.org/10.15479/AT:ISTA:44">https://doi.org/10.15479/AT:ISTA:44</a>.
  ieee: R. Hauschild, “Fiji script to determine average speed and direction of migration
    of cells.” Institute of Science and Technology Austria, 2016.
  ista: Hauschild R. 2016. Fiji script to determine average speed and direction of
    migration of cells, Institute of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:44">10.15479/AT:ISTA:44</a>.
  mla: Hauschild, Robert. <i>Fiji Script to Determine Average Speed and Direction
    of Migration of Cells</i>. Institute of Science and Technology Austria, 2016,
    doi:<a href="https://doi.org/10.15479/AT:ISTA:44">10.15479/AT:ISTA:44</a>.
  short: R. Hauschild, (2016).
datarep_id: '44'
date_created: 2018-12-12T12:31:31Z
date_published: 2016-07-08T00:00:00Z
date_updated: 2024-02-21T13:50:06Z
day: '08'
ddc:
- '570'
department:
- _id: Bio
doi: 10.15479/AT:ISTA:44
file:
- access_level: open_access
  checksum: 9f96cddbcd4ed689f48712ffe234d5e5
  content_type: application/zip
  creator: system
  date_created: 2018-12-12T13:03:03Z
  date_updated: 2020-07-14T12:47:02Z
  file_id: '5621'
  file_name: IST-2016-44-v1+1_migrationAnalyzer.zip
  file_size: 20692
  relation: main_file
file_date_updated: 2020-07-14T12:47:02Z
has_accepted_license: '1'
keyword:
- cell migration
- wide field microscopy
- FIJI
month: '07'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
status: public
title: Fiji script to determine average speed and direction of migration of cells
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '11075'
abstract:
- lang: eng
  text: Previously, we identified the nucleoporin gp210/Nup210 as a critical regulator
    of muscle and neuronal differentiation, but how this nucleoporin exerts its function
    and whether it modulates nuclear pore complex (NPC) activity remain unknown. Here,
    we show that gp210/Nup210 mediates muscle cell differentiation in vitro via its
    conserved N-terminal domain that extends into the perinuclear space. Removal of
    the C-terminal domain, which partially mislocalizes gp210/Nup210 away from NPCs,
    efficiently rescues the differentiation defect caused by the knockdown of endogenous
    gp210/Nup210. Unexpectedly, a gp210/Nup210 mutant lacking the NPC-targeting transmembrane
    and C-terminal domains is sufficient for C2C12 myoblast differentiation. We demonstrate
    that the endoplasmic reticulum (ER) stress-specific caspase cascade is exacerbated
    during Nup210 depletion and that blocking ER stress-mediated apoptosis rescues
    differentiation of Nup210-deficient cells. Our results suggest that the role of
    gp210/Nup210 in cell differentiation is mediated by its large luminal domain,
    which can act independently of NPC association and appears to play a pivotal role
    in the maintenance of nuclear envelope/ER homeostasis.
article_processing_charge: No
article_type: original
author:
- first_name: J. Sebastian
  full_name: Gomez-Cavazos, J. Sebastian
  last_name: Gomez-Cavazos
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Gomez-Cavazos JS, Hetzer M. The nucleoporin gp210/Nup210 controls muscle differentiation
    by regulating nuclear envelope/ER homeostasis. <i>Journal of Cell Biology</i>.
    2015;208(6):671-681. doi:<a href="https://doi.org/10.1083/jcb.201410047">10.1083/jcb.201410047</a>
  apa: Gomez-Cavazos, J. S., &#38; Hetzer, M. (2015). The nucleoporin gp210/Nup210
    controls muscle differentiation by regulating nuclear envelope/ER homeostasis.
    <i>Journal of Cell Biology</i>. Rockefeller University Press. <a href="https://doi.org/10.1083/jcb.201410047">https://doi.org/10.1083/jcb.201410047</a>
  chicago: Gomez-Cavazos, J. Sebastian, and Martin Hetzer. “The Nucleoporin Gp210/Nup210
    Controls Muscle Differentiation by Regulating Nuclear Envelope/ER Homeostasis.”
    <i>Journal of Cell Biology</i>. Rockefeller University Press, 2015. <a href="https://doi.org/10.1083/jcb.201410047">https://doi.org/10.1083/jcb.201410047</a>.
  ieee: J. S. Gomez-Cavazos and M. Hetzer, “The nucleoporin gp210/Nup210 controls
    muscle differentiation by regulating nuclear envelope/ER homeostasis,” <i>Journal
    of Cell Biology</i>, vol. 208, no. 6. Rockefeller University Press, pp. 671–681,
    2015.
  ista: Gomez-Cavazos JS, Hetzer M. 2015. The nucleoporin gp210/Nup210 controls muscle
    differentiation by regulating nuclear envelope/ER homeostasis. Journal of Cell
    Biology. 208(6), 671–681.
  mla: Gomez-Cavazos, J. Sebastian, and Martin Hetzer. “The Nucleoporin Gp210/Nup210
    Controls Muscle Differentiation by Regulating Nuclear Envelope/ER Homeostasis.”
    <i>Journal of Cell Biology</i>, vol. 208, no. 6, Rockefeller University Press,
    2015, pp. 671–81, doi:<a href="https://doi.org/10.1083/jcb.201410047">10.1083/jcb.201410047</a>.
  short: J.S. Gomez-Cavazos, M. Hetzer, Journal of Cell Biology 208 (2015) 671–681.
date_created: 2022-04-07T07:49:10Z
date_published: 2015-03-16T00:00:00Z
date_updated: 2022-07-18T08:43:00Z
day: '16'
doi: 10.1083/jcb.201410047
extern: '1'
external_id:
  pmid:
  - '25778917'
intvolume: '       208'
issue: '6'
keyword:
- Cell Biology
language:
- iso: eng
month: '03'
oa_version: Published Version
page: 671-681
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: The nucleoporin gp210/Nup210 controls muscle differentiation by regulating
  nuclear envelope/ER homeostasis
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 208
year: '2015'
...
---
_id: '11078'
abstract:
- lang: eng
  text: Aging is associated with the decline of protein, cell, and organ function.
    Here, we use an integrated approach to characterize gene expression, bulk translation,
    and cell biology in the brains and livers of young and old rats. We identify 468
    differences in protein abundance between young and old animals. The majority are
    a consequence of altered translation output, that is, the combined effect of changes
    in transcript abundance and translation efficiency. In addition, we identify 130
    proteins whose overall abundance remains unchanged but whose sub-cellular localization,
    phosphorylation state, or splice-form varies. While some protein-level differences
    appear to be a generic property of the rats’ chronological age, the majority are
    specific to one organ. These may be a consequence of the organ’s physiology or
    the chronological age of the cells within the tissue. Taken together, our study
    provides an initial view of the proteome at the molecular, sub-cellular, and organ
    level in young and old rats.
article_processing_charge: No
article_type: original
author:
- first_name: Alessandro
  full_name: Ori, Alessandro
  last_name: Ori
- first_name: Brandon H.
  full_name: Toyama, Brandon H.
  last_name: Toyama
- first_name: Michael S.
  full_name: Harris, Michael S.
  last_name: Harris
- first_name: Thomas
  full_name: Bock, Thomas
  last_name: Bock
- first_name: Murat
  full_name: Iskar, Murat
  last_name: Iskar
- first_name: Peer
  full_name: Bork, Peer
  last_name: Bork
- first_name: Nicholas T.
  full_name: Ingolia, Nicholas T.
  last_name: Ingolia
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
- first_name: Martin
  full_name: Beck, Martin
  last_name: Beck
citation:
  ama: Ori A, Toyama BH, Harris MS, et al. Integrated transcriptome and proteome analyses
    reveal organ-specific proteome deterioration in old rats. <i>Cell Systems</i>.
    2015;1(3):P224-237. doi:<a href="https://doi.org/10.1016/j.cels.2015.08.012">10.1016/j.cels.2015.08.012</a>
  apa: Ori, A., Toyama, B. H., Harris, M. S., Bock, T., Iskar, M., Bork, P., … Beck,
    M. (2015). Integrated transcriptome and proteome analyses reveal organ-specific
    proteome deterioration in old rats. <i>Cell Systems</i>. Elsevier. <a href="https://doi.org/10.1016/j.cels.2015.08.012">https://doi.org/10.1016/j.cels.2015.08.012</a>
  chicago: Ori, Alessandro, Brandon H. Toyama, Michael S. Harris, Thomas Bock, Murat
    Iskar, Peer Bork, Nicholas T. Ingolia, Martin Hetzer, and Martin Beck. “Integrated
    Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration
    in Old Rats.” <i>Cell Systems</i>. Elsevier, 2015. <a href="https://doi.org/10.1016/j.cels.2015.08.012">https://doi.org/10.1016/j.cels.2015.08.012</a>.
  ieee: A. Ori <i>et al.</i>, “Integrated transcriptome and proteome analyses reveal
    organ-specific proteome deterioration in old rats,” <i>Cell Systems</i>, vol.
    1, no. 3. Elsevier, pp. P224-237, 2015.
  ista: Ori A, Toyama BH, Harris MS, Bock T, Iskar M, Bork P, Ingolia NT, Hetzer M,
    Beck M. 2015. Integrated transcriptome and proteome analyses reveal organ-specific
    proteome deterioration in old rats. Cell Systems. 1(3), P224-237.
  mla: Ori, Alessandro, et al. “Integrated Transcriptome and Proteome Analyses Reveal
    Organ-Specific Proteome Deterioration in Old Rats.” <i>Cell Systems</i>, vol.
    1, no. 3, Elsevier, 2015, pp. P224-237, doi:<a href="https://doi.org/10.1016/j.cels.2015.08.012">10.1016/j.cels.2015.08.012</a>.
  short: A. Ori, B.H. Toyama, M.S. Harris, T. Bock, M. Iskar, P. Bork, N.T. Ingolia,
    M. Hetzer, M. Beck, Cell Systems 1 (2015) P224-237.
date_created: 2022-04-07T07:49:39Z
date_published: 2015-09-23T00:00:00Z
date_updated: 2022-07-18T08:44:07Z
day: '23'
doi: 10.1016/j.cels.2015.08.012
extern: '1'
external_id:
  pmid:
  - '27135913'
intvolume: '         1'
issue: '3'
keyword:
- Cell Biology
- Histology
- Pathology and Forensic Medicine
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.cels.2015.08.012
month: '09'
oa: 1
oa_version: Published Version
page: P224-237
pmid: 1
publication: Cell Systems
publication_identifier:
  issn:
  - 2405-4712
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Integrated transcriptome and proteome analyses reveal organ-specific proteome
  deterioration in old rats
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 1
year: '2015'
...
---
_id: '11079'
abstract:
- lang: eng
  text: Aging is a major risk factor for many human diseases, and in vitro generation
    of human neurons is an attractive approach for modeling aging-related brain disorders.
    However, modeling aging in differentiated human neurons has proved challenging.
    We generated neurons from human donors across a broad range of ages, either by
    iPSC-based reprogramming and differentiation or by direct conversion into induced
    neurons (iNs). While iPSCs and derived neurons did not retain aging-associated
    gene signatures, iNs displayed age-specific transcriptional profiles and revealed
    age-associated decreases in the nuclear transport receptor RanBP17. We detected
    an age-dependent loss of nucleocytoplasmic compartmentalization (NCC) in donor
    fibroblasts and corresponding iNs and found that reduced RanBP17 impaired NCC
    in young cells, while iPSC rejuvenation restored NCC in aged cells. These results
    show that iNs retain important aging-related signatures, thus allowing modeling
    of the aging process in vitro, and they identify impaired NCC as an important
    factor in human aging.
article_processing_charge: No
article_type: original
author:
- first_name: Jerome
  full_name: Mertens, Jerome
  last_name: Mertens
- first_name: Apuã C.M.
  full_name: Paquola, Apuã C.M.
  last_name: Paquola
- first_name: Manching
  full_name: Ku, Manching
  last_name: Ku
- first_name: Emily
  full_name: Hatch, Emily
  last_name: Hatch
- first_name: Lena
  full_name: Böhnke, Lena
  last_name: Böhnke
- first_name: Shauheen
  full_name: Ladjevardi, Shauheen
  last_name: Ladjevardi
- first_name: Sean
  full_name: McGrath, Sean
  last_name: McGrath
- first_name: Benjamin
  full_name: Campbell, Benjamin
  last_name: Campbell
- first_name: Hyungjun
  full_name: Lee, Hyungjun
  last_name: Lee
- first_name: Joseph R.
  full_name: Herdy, Joseph R.
  last_name: Herdy
- first_name: J. Tiago
  full_name: Gonçalves, J. Tiago
  last_name: Gonçalves
- first_name: Tomohisa
  full_name: Toda, Tomohisa
  last_name: Toda
- first_name: Yongsung
  full_name: Kim, Yongsung
  last_name: Kim
- first_name: Jürgen
  full_name: Winkler, Jürgen
  last_name: Winkler
- first_name: Jun
  full_name: Yao, Jun
  last_name: Yao
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
- first_name: Fred H.
  full_name: Gage, Fred H.
  last_name: Gage
citation:
  ama: Mertens J, Paquola ACM, Ku M, et al. Directly reprogrammed human neurons retain
    aging-associated transcriptomic signatures and reveal age-related nucleocytoplasmic
    defects. <i>Cell Stem Cell</i>. 2015;17(6):705-718. doi:<a href="https://doi.org/10.1016/j.stem.2015.09.001">10.1016/j.stem.2015.09.001</a>
  apa: Mertens, J., Paquola, A. C. M., Ku, M., Hatch, E., Böhnke, L., Ladjevardi,
    S., … Gage, F. H. (2015). Directly reprogrammed human neurons retain aging-associated
    transcriptomic signatures and reveal age-related nucleocytoplasmic defects. <i>Cell
    Stem Cell</i>. Elsevier. <a href="https://doi.org/10.1016/j.stem.2015.09.001">https://doi.org/10.1016/j.stem.2015.09.001</a>
  chicago: Mertens, Jerome, Apuã C.M. Paquola, Manching Ku, Emily Hatch, Lena Böhnke,
    Shauheen Ladjevardi, Sean McGrath, et al. “Directly Reprogrammed Human Neurons
    Retain Aging-Associated Transcriptomic Signatures and Reveal Age-Related Nucleocytoplasmic
    Defects.” <i>Cell Stem Cell</i>. Elsevier, 2015. <a href="https://doi.org/10.1016/j.stem.2015.09.001">https://doi.org/10.1016/j.stem.2015.09.001</a>.
  ieee: J. Mertens <i>et al.</i>, “Directly reprogrammed human neurons retain aging-associated
    transcriptomic signatures and reveal age-related nucleocytoplasmic defects,” <i>Cell
    Stem Cell</i>, vol. 17, no. 6. Elsevier, pp. 705–718, 2015.
  ista: Mertens J, Paquola ACM, Ku M, Hatch E, Böhnke L, Ladjevardi S, McGrath S,
    Campbell B, Lee H, Herdy JR, Gonçalves JT, Toda T, Kim Y, Winkler J, Yao J, Hetzer
    M, Gage FH. 2015. Directly reprogrammed human neurons retain aging-associated
    transcriptomic signatures and reveal age-related nucleocytoplasmic defects. Cell
    Stem Cell. 17(6), 705–718.
  mla: Mertens, Jerome, et al. “Directly Reprogrammed Human Neurons Retain Aging-Associated
    Transcriptomic Signatures and Reveal Age-Related Nucleocytoplasmic Defects.” <i>Cell
    Stem Cell</i>, vol. 17, no. 6, Elsevier, 2015, pp. 705–18, doi:<a href="https://doi.org/10.1016/j.stem.2015.09.001">10.1016/j.stem.2015.09.001</a>.
  short: J. Mertens, A.C.M. Paquola, M. Ku, E. Hatch, L. Böhnke, S. Ladjevardi, S.
    McGrath, B. Campbell, H. Lee, J.R. Herdy, J.T. Gonçalves, T. Toda, Y. Kim, J.
    Winkler, J. Yao, M. Hetzer, F.H. Gage, Cell Stem Cell 17 (2015) 705–718.
date_created: 2022-04-07T07:49:51Z
date_published: 2015-12-03T00:00:00Z
date_updated: 2022-07-18T08:44:21Z
day: '03'
doi: 10.1016/j.stem.2015.09.001
extern: '1'
external_id:
  pmid:
  - '26456686'
intvolume: '        17'
issue: '6'
keyword:
- Cell Biology
- Genetics
- Molecular Medicine
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.stem.2015.09.001
month: '12'
oa: 1
oa_version: Published Version
page: 705-718
pmid: 1
publication: Cell Stem Cell
publication_identifier:
  issn:
  - 1934-5909
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Directly reprogrammed human neurons retain aging-associated transcriptomic
  signatures and reveal age-related nucleocytoplasmic defects
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 17
year: '2015'
...
---
_id: '12196'
abstract:
- lang: eng
  text: SNC1 (SUPPRESSOR OF NPR1, CONSTITUTIVE 1) is one of a suite of intracellular
    Arabidopsis NOD-like receptor (NLR) proteins which, upon activation, result in
    the induction of defense responses. However, the molecular mechanisms underlying
    NLR activation and the subsequent provocation of immune responses are only partially
    characterized. To identify negative regulators of NLR-mediated immunity, a forward
    genetic screen was undertaken to search for enhancers of the dwarf, autoimmune
    gain-of-function snc1 mutant. To avoid lethality resulting from severe dwarfism,
    the screen was conducted using mos4 (modifier of snc1, 4) snc1 plants, which display
    wild-type-like morphology and resistance. M2 progeny were screened for mutant,
    snc1-enhancing (muse) mutants displaying a reversion to snc1-like phenotypes.
    The muse9 mos4 snc1 triple mutant was found to exhibit dwarf morphology, elevated
    expression of the pPR2-GUS defense marker reporter gene and enhanced resistance
    to the oomycete pathogen Hyaloperonospora arabidopsidis Noco2. Via map-based cloning
    and Illumina sequencing, it was determined that the muse9 mutation is in the gene
    encoding the SWI/SNF chromatin remodeler SYD (SPLAYED), and was thus renamed syd-10.
    The syd-10 single mutant has no observable alteration from wild-type-like resistance,
    although the syd-4 T-DNA insertion allele displays enhanced resistance to the
    bacterial pathogen Pseudomonas syringae pv. maculicola ES4326. Transcription of
    SNC1 is increased in both syd-4 and syd-10. These data suggest that SYD plays
    a subtle, specific role in the regulation of SNC1 expression and SNC1-mediated
    immunity. SYD may work with other proteins at the chromatin level to repress SNC1
    transcription; such regulation is important for fine-tuning the expression of
    NLR-encoding genes to prevent unpropitious autoimmunity.
acknowledgement: "This work was supported by the National Sciences and Engineering
  Research Council of Canada [Canada Graduate\r\nScholarship–Doctoral to K.J.; Discovery
  Grant to X.L.]; the department of Botany at the University of f British Columbia\r\n[the
  Dewar Cooper Memorial Fund to X.L.].The authors would like to thank Dr. Yuelin Zhang
  and Ms. Yan Li for their assistance with next-generation sequencing, and Mr. Charles
  Copeland for critical reading of the manuscript."
article_processing_charge: No
article_type: original
author:
- first_name: Kaeli C.M.
  full_name: Johnson, Kaeli C.M.
  last_name: Johnson
- first_name: Shitou
  full_name: Xia, Shitou
  last_name: Xia
- first_name: Xiaoqi
  full_name: Feng, Xiaoqi
  id: e0164712-22ee-11ed-b12a-d80fcdf35958
  last_name: Feng
  orcid: 0000-0002-4008-1234
- first_name: Xin
  full_name: Li, Xin
  last_name: Li
citation:
  ama: Johnson KCM, Xia S, Feng X, Li X. The chromatin remodeler SPLAYED negatively
    regulates SNC1-mediated immunity. <i>Plant and Cell Physiology</i>. 2015;56(8):1616-1623.
    doi:<a href="https://doi.org/10.1093/pcp/pcv087">10.1093/pcp/pcv087</a>
  apa: Johnson, K. C. M., Xia, S., Feng, X., &#38; Li, X. (2015). The chromatin remodeler
    SPLAYED negatively regulates SNC1-mediated immunity. <i>Plant and Cell Physiology</i>.
    Oxford University Press. <a href="https://doi.org/10.1093/pcp/pcv087">https://doi.org/10.1093/pcp/pcv087</a>
  chicago: Johnson, Kaeli C.M., Shitou Xia, Xiaoqi Feng, and Xin Li. “The Chromatin
    Remodeler SPLAYED Negatively Regulates SNC1-Mediated Immunity.” <i>Plant and Cell
    Physiology</i>. Oxford University Press, 2015. <a href="https://doi.org/10.1093/pcp/pcv087">https://doi.org/10.1093/pcp/pcv087</a>.
  ieee: K. C. M. Johnson, S. Xia, X. Feng, and X. Li, “The chromatin remodeler SPLAYED
    negatively regulates SNC1-mediated immunity,” <i>Plant and Cell Physiology</i>,
    vol. 56, no. 8. Oxford University Press, pp. 1616–1623, 2015.
  ista: Johnson KCM, Xia S, Feng X, Li X. 2015. The chromatin remodeler SPLAYED negatively
    regulates SNC1-mediated immunity. Plant and Cell Physiology. 56(8), 1616–1623.
  mla: Johnson, Kaeli C. M., et al. “The Chromatin Remodeler SPLAYED Negatively Regulates
    SNC1-Mediated Immunity.” <i>Plant and Cell Physiology</i>, vol. 56, no. 8, Oxford
    University Press, 2015, pp. 1616–23, doi:<a href="https://doi.org/10.1093/pcp/pcv087">10.1093/pcp/pcv087</a>.
  short: K.C.M. Johnson, S. Xia, X. Feng, X. Li, Plant and Cell Physiology 56 (2015)
    1616–1623.
date_created: 2023-01-16T09:20:22Z
date_published: 2015-08-01T00:00:00Z
date_updated: 2023-05-08T11:03:23Z
department:
- _id: XiFe
doi: 10.1093/pcp/pcv087
extern: '1'
external_id:
  pmid:
  - '26063389'
intvolume: '        56'
issue: '8'
keyword:
- Cell Biology
- Plant Science
- Physiology
- General Medicine
language:
- iso: eng
month: '08'
oa_version: None
page: 1616-1623
pmid: 1
publication: Plant and Cell Physiology
publication_identifier:
  issn:
  - 0032-0781
  - 1471-9053
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: The chromatin remodeler SPLAYED negatively regulates SNC1-mediated immunity
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 56
year: '2015'
...
---
_id: '11081'
abstract:
- lang: eng
  text: In eukaryotic cells the nuclear genome is enclosed by the nuclear envelope
    (NE). In metazoans, the NE breaks down in mitosis and it has been assumed that
    the physical barrier separating nucleoplasm and cytoplasm remains intact during
    the rest of the cell cycle and cell differentiation. However, recent studies suggest
    that nonmitotic NE remodeling plays a critical role in development, virus infection,
    laminopathies, and cancer. Although the mechanisms underlying these NE restructuring
    events are currently being defined, one common theme is activation of protein
    kinase C family members in the interphase nucleus to disrupt the nuclear lamina,
    demonstrating the importance of the lamina in maintaining nuclear integrity.
article_processing_charge: No
article_type: review
author:
- first_name: Emily
  full_name: Hatch, Emily
  last_name: Hatch
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Hatch E, Hetzer M. Breaching the nuclear envelope in development and disease.
    <i>Journal of Cell Biology</i>. 2014;205(2):133-141. doi:<a href="https://doi.org/10.1083/jcb.201402003">10.1083/jcb.201402003</a>
  apa: Hatch, E., &#38; Hetzer, M. (2014). Breaching the nuclear envelope in development
    and disease. <i>Journal of Cell Biology</i>. Rockefeller University Press. <a
    href="https://doi.org/10.1083/jcb.201402003">https://doi.org/10.1083/jcb.201402003</a>
  chicago: Hatch, Emily, and Martin Hetzer. “Breaching the Nuclear Envelope in Development
    and Disease.” <i>Journal of Cell Biology</i>. Rockefeller University Press, 2014.
    <a href="https://doi.org/10.1083/jcb.201402003">https://doi.org/10.1083/jcb.201402003</a>.
  ieee: E. Hatch and M. Hetzer, “Breaching the nuclear envelope in development and
    disease,” <i>Journal of Cell Biology</i>, vol. 205, no. 2. Rockefeller University
    Press, pp. 133–141, 2014.
  ista: Hatch E, Hetzer M. 2014. Breaching the nuclear envelope in development and
    disease. Journal of Cell Biology. 205(2), 133–141.
  mla: Hatch, Emily, and Martin Hetzer. “Breaching the Nuclear Envelope in Development
    and Disease.” <i>Journal of Cell Biology</i>, vol. 205, no. 2, Rockefeller University
    Press, 2014, pp. 133–41, doi:<a href="https://doi.org/10.1083/jcb.201402003">10.1083/jcb.201402003</a>.
  short: E. Hatch, M. Hetzer, Journal of Cell Biology 205 (2014) 133–141.
date_created: 2022-04-07T07:50:13Z
date_published: 2014-04-21T00:00:00Z
date_updated: 2022-07-18T08:45:09Z
day: '21'
doi: 10.1083/jcb.201402003
extern: '1'
external_id:
  pmid:
  - '24751535'
intvolume: '       205'
issue: '2'
keyword:
- Cell Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1083/jcb.201402003
month: '04'
oa: 1
oa_version: Published Version
page: 133-141
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  issn:
  - 1540-8140
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Breaching the nuclear envelope in development and disease
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 205
year: '2014'
...
---
_id: '11082'
abstract:
- lang: eng
  text: The nuclear pore complex (NPC) plays a critical role in gene expression by
    mediating import of transcription regulators into the nucleus and export of RNA
    transcripts to the cytoplasm. Emerging evidence suggests that in addition to mediating
    transport, a subset of nucleoporins (Nups) engage in transcriptional activation
    and elongation at genomic loci that are not associated with NPCs. The underlying
    mechanism and regulation of Nup mobility on and off nuclear pores remain unclear.
    Here we show that Nup50 is a mobile Nup with a pronounced presence both at the
    NPC and in the nucleoplasm that can move between these different localizations.
    Strikingly, the dynamic behavior of Nup50 in both locations is dependent on active
    transcription by RNA polymerase II and requires the N-terminal half of the protein,
    which contains importin α– and Nup153-binding domains. However, Nup50 dynamics
    are independent of importin α, Nup153, and Nup98, even though the latter two proteins
    also exhibit transcription-dependent mobility. Of interest, depletion of Nup50
    from C2C12 myoblasts does not affect cell proliferation but inhibits differentiation
    into myotubes. Taken together, our results suggest a transport-independent role
    for Nup50 in chromatin biology that occurs away from the NPC.
article_processing_charge: No
article_type: original
author:
- first_name: Abigail L.
  full_name: Buchwalter, Abigail L.
  last_name: Buchwalter
- first_name: Yun
  full_name: Liang, Yun
  last_name: Liang
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Buchwalter AL, Liang Y, Hetzer M. Nup50 is required for cell differentiation
    and exhibits transcription-dependent dynamics. <i>Molecular Biology of the Cell</i>.
    2014;25(16):2472-2484. doi:<a href="https://doi.org/10.1091/mbc.e14-04-0865">10.1091/mbc.e14-04-0865</a>
  apa: Buchwalter, A. L., Liang, Y., &#38; Hetzer, M. (2014). Nup50 is required for
    cell differentiation and exhibits transcription-dependent dynamics. <i>Molecular
    Biology of the Cell</i>. American Society for Cell Biology. <a href="https://doi.org/10.1091/mbc.e14-04-0865">https://doi.org/10.1091/mbc.e14-04-0865</a>
  chicago: Buchwalter, Abigail L., Yun Liang, and Martin Hetzer. “Nup50 Is Required
    for Cell Differentiation and Exhibits Transcription-Dependent Dynamics.” <i>Molecular
    Biology of the Cell</i>. American Society for Cell Biology, 2014. <a href="https://doi.org/10.1091/mbc.e14-04-0865">https://doi.org/10.1091/mbc.e14-04-0865</a>.
  ieee: A. L. Buchwalter, Y. Liang, and M. Hetzer, “Nup50 is required for cell differentiation
    and exhibits transcription-dependent dynamics,” <i>Molecular Biology of the Cell</i>,
    vol. 25, no. 16. American Society for Cell Biology, pp. 2472–2484, 2014.
  ista: Buchwalter AL, Liang Y, Hetzer M. 2014. Nup50 is required for cell differentiation
    and exhibits transcription-dependent dynamics. Molecular Biology of the Cell.
    25(16), 2472–2484.
  mla: Buchwalter, Abigail L., et al. “Nup50 Is Required for Cell Differentiation
    and Exhibits Transcription-Dependent Dynamics.” <i>Molecular Biology of the Cell</i>,
    vol. 25, no. 16, American Society for Cell Biology, 2014, pp. 2472–84, doi:<a
    href="https://doi.org/10.1091/mbc.e14-04-0865">10.1091/mbc.e14-04-0865</a>.
  short: A.L. Buchwalter, Y. Liang, M. Hetzer, Molecular Biology of the Cell 25 (2014)
    2472–2484.
date_created: 2022-04-07T07:50:24Z
date_published: 2014-08-15T00:00:00Z
date_updated: 2022-07-18T08:45:20Z
day: '15'
doi: 10.1091/mbc.e14-04-0865
extern: '1'
intvolume: '        25'
issue: '16'
keyword:
- Cell Biology
- Molecular Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1091/mbc.e14-04-0865
month: '08'
oa: 1
oa_version: Published Version
page: 2472-2484
publication: Molecular Biology of the Cell
publication_identifier:
  issn:
  - 1059-1524
  - 1939-4586
publication_status: published
publisher: American Society for Cell Biology
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nup50 is required for cell differentiation and exhibits transcription-dependent
  dynamics
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 25
year: '2014'
...
---
_id: '11083'
abstract:
- lang: eng
  text: Nuclear pore complex (NPC) proteins are known for their critical roles in
    regulating nucleocytoplasmic traffic of macromolecules across the nuclear envelope.
    However, recent findings suggest that some nucleoporins (Nups), including Nup98,
    have additional functions in developmental gene regulation. Nup98, which exhibits
    transcription-dependent mobility at the NPC but can also bind chromatin away from
    the nuclear envelope, is frequently involved in chromosomal translocations in
    a subset of patients suffering from acute myeloid leukemia (AML). A common paradigm
    suggests that Nup98 translocations cause aberrant transcription when they are
    recuited to aberrant genomic loci. Importantly, this model fails to account for
    the potential loss of wild type (WT) Nup98 function in the presence of Nup98 translocation
    mutants. Here we examine how the cell might regulate Nup98 nucleoplasmic protein
    levels to control transcription in healthy cells. In addition, we discuss the
    possibility that dominant negative Nup98 fusion proteins disrupt the transcriptional
    activity of WT Nup98 in the nucleoplasm to drive AML.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Tobias M.
  full_name: Franks, Tobias M.
  last_name: Franks
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Franks TM, Hetzer M. The role of Nup98 in transcription regulation in healthy
    and diseased cells. <i>Trends in Cell Biology</i>. 2013;23(3):112-117. doi:<a
    href="https://doi.org/10.1016/j.tcb.2012.10.013">10.1016/j.tcb.2012.10.013</a>
  apa: Franks, T. M., &#38; Hetzer, M. (2013). The role of Nup98 in transcription
    regulation in healthy and diseased cells. <i>Trends in Cell Biology</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.tcb.2012.10.013">https://doi.org/10.1016/j.tcb.2012.10.013</a>
  chicago: Franks, Tobias M., and Martin Hetzer. “The Role of Nup98 in Transcription
    Regulation in Healthy and Diseased Cells.” <i>Trends in Cell Biology</i>. Elsevier,
    2013. <a href="https://doi.org/10.1016/j.tcb.2012.10.013">https://doi.org/10.1016/j.tcb.2012.10.013</a>.
  ieee: T. M. Franks and M. Hetzer, “The role of Nup98 in transcription regulation
    in healthy and diseased cells,” <i>Trends in Cell Biology</i>, vol. 23, no. 3.
    Elsevier, pp. 112–117, 2013.
  ista: Franks TM, Hetzer M. 2013. The role of Nup98 in transcription regulation in
    healthy and diseased cells. Trends in Cell Biology. 23(3), 112–117.
  mla: Franks, Tobias M., and Martin Hetzer. “The Role of Nup98 in Transcription Regulation
    in Healthy and Diseased Cells.” <i>Trends in Cell Biology</i>, vol. 23, no. 3,
    Elsevier, 2013, pp. 112–17, doi:<a href="https://doi.org/10.1016/j.tcb.2012.10.013">10.1016/j.tcb.2012.10.013</a>.
  short: T.M. Franks, M. Hetzer, Trends in Cell Biology 23 (2013) 112–117.
date_created: 2022-04-07T07:50:33Z
date_published: 2013-03-01T00:00:00Z
date_updated: 2022-07-18T08:45:34Z
day: '01'
doi: 10.1016/j.tcb.2012.10.013
extern: '1'
external_id:
  pmid:
  - '23246429'
intvolume: '        23'
issue: '3'
keyword:
- Cell Biology
language:
- iso: eng
month: '03'
oa_version: None
page: 112-117
pmid: 1
publication: Trends in Cell Biology
publication_identifier:
  issn:
  - 0962-8924
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: The role of Nup98 in transcription regulation in healthy and diseased cells
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 23
year: '2013'
...
---
_id: '11084'
abstract:
- lang: eng
  text: Protein turnover is an effective way of maintaining a functional proteome,
    as old and potentially damaged polypeptides are destroyed and replaced by newly
    synthesized copies. An increasing number of intracellular proteins, however, have
    been identified that evade this turnover process and instead are maintained over
    a cell's lifetime. This diverse group of long-lived proteins might be particularly
    prone to accumulation of damage and thus have a crucial role in the functional
    deterioration of key regulatory processes during ageing.
article_processing_charge: No
article_type: original
author:
- first_name: Brandon H.
  full_name: Toyama, Brandon H.
  last_name: Toyama
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: 'Toyama BH, Hetzer M. Protein homeostasis: Live long, won’t prosper. <i>Nature
    Reviews Molecular Cell Biology</i>. 2013;14:55-61. doi:<a href="https://doi.org/10.1038/nrm3496">10.1038/nrm3496</a>'
  apa: 'Toyama, B. H., &#38; Hetzer, M. (2013). Protein homeostasis: Live long, won’t
    prosper. <i>Nature Reviews Molecular Cell Biology</i>. Springer Nature. <a href="https://doi.org/10.1038/nrm3496">https://doi.org/10.1038/nrm3496</a>'
  chicago: 'Toyama, Brandon H., and Martin Hetzer. “Protein Homeostasis: Live Long,
    Won’t Prosper.” <i>Nature Reviews Molecular Cell Biology</i>. Springer Nature,
    2013. <a href="https://doi.org/10.1038/nrm3496">https://doi.org/10.1038/nrm3496</a>.'
  ieee: 'B. H. Toyama and M. Hetzer, “Protein homeostasis: Live long, won’t prosper,”
    <i>Nature Reviews Molecular Cell Biology</i>, vol. 14. Springer Nature, pp. 55–61,
    2013.'
  ista: 'Toyama BH, Hetzer M. 2013. Protein homeostasis: Live long, won’t prosper.
    Nature Reviews Molecular Cell Biology. 14, 55–61.'
  mla: 'Toyama, Brandon H., and Martin Hetzer. “Protein Homeostasis: Live Long, Won’t
    Prosper.” <i>Nature Reviews Molecular Cell Biology</i>, vol. 14, Springer Nature,
    2013, pp. 55–61, doi:<a href="https://doi.org/10.1038/nrm3496">10.1038/nrm3496</a>.'
  short: B.H. Toyama, M. Hetzer, Nature Reviews Molecular Cell Biology 14 (2013) 55–61.
date_created: 2022-04-07T07:50:43Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2022-07-18T08:37:53Z
day: '01'
doi: 10.1038/nrm3496
extern: '1'
external_id:
  pmid:
  - '23258296'
intvolume: '        14'
keyword:
- Cell Biology
- Molecular Biology
language:
- iso: eng
month: '01'
oa_version: None
page: 55-61
pmid: 1
publication: Nature Reviews Molecular Cell Biology
publication_identifier:
  issn:
  - 1471-0072
  - 1471-0080
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Protein homeostasis: Live long, won''t prosper'
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 14
year: '2013'
...
---
_id: '11089'
abstract:
- lang: eng
  text: The Nuclear Envelope (NE) contains over 100 different proteins that associate
    with nuclear components such as chromatin, the lamina and the transcription machinery.
    Mutations in genes encoding NE proteins have been shown to result in tissue-specific
    defects and disease, suggesting cell-type specific differences in NE composition
    and function. Consistent with these observations, recent studies have revealed
    unexpected functions for numerous NE associated proteins during cell differentiation
    and development. Here we review the latest insights into the roles played by the
    NE in cell differentiation, development, disease and aging, focusing primarily
    on inner nuclear membrane (INM) proteins and nuclear pore components.
article_processing_charge: No
article_type: original
author:
- first_name: J Sebastian
  full_name: Gomez-Cavazos, J Sebastian
  last_name: Gomez-Cavazos
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: 'Gomez-Cavazos JS, Hetzer M. Outfits for different occasions: tissue-specific
    roles of Nuclear Envelope proteins. <i>Current Opinion in Cell Biology</i>. 2012;24(6):775-783.
    doi:<a href="https://doi.org/10.1016/j.ceb.2012.08.008">10.1016/j.ceb.2012.08.008</a>'
  apa: 'Gomez-Cavazos, J. S., &#38; Hetzer, M. (2012). Outfits for different occasions:
    tissue-specific roles of Nuclear Envelope proteins. <i>Current Opinion in Cell
    Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.ceb.2012.08.008">https://doi.org/10.1016/j.ceb.2012.08.008</a>'
  chicago: 'Gomez-Cavazos, J Sebastian, and Martin Hetzer. “Outfits for Different
    Occasions: Tissue-Specific Roles of Nuclear Envelope Proteins.” <i>Current Opinion
    in Cell Biology</i>. Elsevier, 2012. <a href="https://doi.org/10.1016/j.ceb.2012.08.008">https://doi.org/10.1016/j.ceb.2012.08.008</a>.'
  ieee: 'J. S. Gomez-Cavazos and M. Hetzer, “Outfits for different occasions: tissue-specific
    roles of Nuclear Envelope proteins,” <i>Current Opinion in Cell Biology</i>, vol.
    24, no. 6. Elsevier, pp. 775–783, 2012.'
  ista: 'Gomez-Cavazos JS, Hetzer M. 2012. Outfits for different occasions: tissue-specific
    roles of Nuclear Envelope proteins. Current Opinion in Cell Biology. 24(6), 775–783.'
  mla: 'Gomez-Cavazos, J. Sebastian, and Martin Hetzer. “Outfits for Different Occasions:
    Tissue-Specific Roles of Nuclear Envelope Proteins.” <i>Current Opinion in Cell
    Biology</i>, vol. 24, no. 6, Elsevier, 2012, pp. 775–83, doi:<a href="https://doi.org/10.1016/j.ceb.2012.08.008">10.1016/j.ceb.2012.08.008</a>.'
  short: J.S. Gomez-Cavazos, M. Hetzer, Current Opinion in Cell Biology 24 (2012)
    775–783.
date_created: 2022-04-07T07:51:37Z
date_published: 2012-12-01T00:00:00Z
date_updated: 2022-07-18T08:38:47Z
day: '01'
doi: 10.1016/j.ceb.2012.08.008
extern: '1'
external_id:
  pmid:
  - '22995343'
intvolume: '        24'
issue: '6'
keyword:
- Cell Biology
language:
- iso: eng
month: '12'
oa_version: None
page: 775-783
pmid: 1
publication: Current Opinion in Cell Biology
publication_identifier:
  issn:
  - 0955-0674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Outfits for different occasions: tissue-specific roles of Nuclear Envelope
  proteins'
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 24
year: '2012'
...
---
_id: '11091'
abstract:
- lang: eng
  text: Neoplastic cells are often characterized by specific morphological abnormalities
    of the nuclear envelope (NE), which have been used for cancer diagnosis for more
    than a century. The NE is a double phospholipid bilayer that encapsulates the
    nuclear genome, regulates all nuclear trafficking of RNAs and proteins and prevents
    the passive diffusion of macromolecules between the nucleoplasm and the cytoplasm.
    Whether there is a consequence to the proper functioning of the cell and loss
    of structural integrity of the nucleus remains unclear. Using live cell imaging,
    we characterize a phenomenon wherein nuclei of several proliferating human cancer
    cell lines become temporarily ruptured during interphase. Strikingly, NE rupturing
    was associated with the mislocalization of nucleoplasmic and cytoplasmic proteins
    and, in the most extreme cases, the entrapment of cytoplasmic organelles in the
    nuclear interior. In addition, we observed the formation of micronuclei-like structures
    during interphase and the movement of chromatin out of the nuclear space. The
    frequency of these NE rupturing events was higher in cells in which the nuclear
    lamina, a network of intermediate filaments providing mechanical support to the
    NE, was not properly formed. Our data uncover the existence of a NE instability
    that has the potential to change the genomic landscape of cancer cells.
article_processing_charge: No
article_type: original
author:
- first_name: Jesse D.
  full_name: Vargas, Jesse D.
  last_name: Vargas
- first_name: Emily M.
  full_name: Hatch, Emily M.
  last_name: Hatch
- first_name: Daniel J.
  full_name: Anderson, Daniel J.
  last_name: Anderson
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Vargas JD, Hatch EM, Anderson DJ, Hetzer M. Transient nuclear envelope rupturing
    during interphase in human cancer cells. <i>Nucleus</i>. 2012;3(1):88-100. doi:<a
    href="https://doi.org/10.4161/nucl.18954">10.4161/nucl.18954</a>
  apa: Vargas, J. D., Hatch, E. M., Anderson, D. J., &#38; Hetzer, M. (2012). Transient
    nuclear envelope rupturing during interphase in human cancer cells. <i>Nucleus</i>.
    Taylor &#38; Francis. <a href="https://doi.org/10.4161/nucl.18954">https://doi.org/10.4161/nucl.18954</a>
  chicago: Vargas, Jesse D., Emily M. Hatch, Daniel J. Anderson, and Martin Hetzer.
    “Transient Nuclear Envelope Rupturing during Interphase in Human Cancer Cells.”
    <i>Nucleus</i>. Taylor &#38; Francis, 2012. <a href="https://doi.org/10.4161/nucl.18954">https://doi.org/10.4161/nucl.18954</a>.
  ieee: J. D. Vargas, E. M. Hatch, D. J. Anderson, and M. Hetzer, “Transient nuclear
    envelope rupturing during interphase in human cancer cells,” <i>Nucleus</i>, vol.
    3, no. 1. Taylor &#38; Francis, pp. 88–100, 2012.
  ista: Vargas JD, Hatch EM, Anderson DJ, Hetzer M. 2012. Transient nuclear envelope
    rupturing during interphase in human cancer cells. Nucleus. 3(1), 88–100.
  mla: Vargas, Jesse D., et al. “Transient Nuclear Envelope Rupturing during Interphase
    in Human Cancer Cells.” <i>Nucleus</i>, vol. 3, no. 1, Taylor &#38; Francis, 2012,
    pp. 88–100, doi:<a href="https://doi.org/10.4161/nucl.18954">10.4161/nucl.18954</a>.
  short: J.D. Vargas, E.M. Hatch, D.J. Anderson, M. Hetzer, Nucleus 3 (2012) 88–100.
date_created: 2022-04-07T07:51:53Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2022-07-18T08:52:53Z
day: '01'
doi: 10.4161/nucl.18954
extern: '1'
external_id:
  pmid:
  - '22567193'
intvolume: '         3'
issue: '1'
keyword:
- Cell Biology
language:
- iso: eng
month: '01'
oa_version: None
page: 88-100
pmid: 1
publication: Nucleus
publication_identifier:
  eissn:
  - 1949-1042
  issn:
  - 1949-1034
publication_status: published
publisher: Taylor & Francis
quality_controlled: '1'
scopus_import: '1'
status: public
title: Transient nuclear envelope rupturing during interphase in human cancer cells
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 3
year: '2012'
...
---
_id: '11093'
abstract:
- lang: eng
  text: Nuclear pore complexes (NPCs) are built from ∼30 different proteins called
    nucleoporins or Nups. Previous studies have shown that several Nups exhibit cell-type-specific
    expression and that mutations in NPC components result in tissue-specific diseases.
    Here we show that a specific change in NPC composition is required for both myogenic
    and neuronal differentiation. The transmembrane nucleoporin Nup210 is absent in
    proliferating myoblasts and embryonic stem cells (ESCs) but becomes expressed
    and incorporated into NPCs during cell differentiation. Preventing Nup210 production
    by RNAi blocks myogenesis and the differentiation of ESCs into neuroprogenitors.
    We found that the addition of Nup210 to NPCs does not affect nuclear transport
    but is required for the induction of genes that are essential for cell differentiation.
    Our results identify a single change in NPC composition as an essential step in
    cell differentiation and establish a role for Nup210 in gene expression regulation
    and cell fate determination.
article_processing_charge: No
article_type: original
author:
- first_name: Maximiliano A.
  full_name: D'Angelo, Maximiliano A.
  last_name: D'Angelo
- first_name: J. Sebastian
  full_name: Gomez-Cavazos, J. Sebastian
  last_name: Gomez-Cavazos
- first_name: Arianna
  full_name: Mei, Arianna
  last_name: Mei
- first_name: Daniel H.
  full_name: Lackner, Daniel H.
  last_name: Lackner
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: D’Angelo MA, Gomez-Cavazos JS, Mei A, Lackner DH, Hetzer M. A change in nuclear
    pore complex composition regulates cell differentiation. <i>Developmental Cell</i>.
    2012;22(2):446-458. doi:<a href="https://doi.org/10.1016/j.devcel.2011.11.021">10.1016/j.devcel.2011.11.021</a>
  apa: D’Angelo, M. A., Gomez-Cavazos, J. S., Mei, A., Lackner, D. H., &#38; Hetzer,
    M. (2012). A change in nuclear pore complex composition regulates cell differentiation.
    <i>Developmental Cell</i>. Elsevier. <a href="https://doi.org/10.1016/j.devcel.2011.11.021">https://doi.org/10.1016/j.devcel.2011.11.021</a>
  chicago: D’Angelo, Maximiliano A., J. Sebastian Gomez-Cavazos, Arianna Mei, Daniel H.
    Lackner, and Martin Hetzer. “A Change in Nuclear Pore Complex Composition Regulates
    Cell Differentiation.” <i>Developmental Cell</i>. Elsevier, 2012. <a href="https://doi.org/10.1016/j.devcel.2011.11.021">https://doi.org/10.1016/j.devcel.2011.11.021</a>.
  ieee: M. A. D’Angelo, J. S. Gomez-Cavazos, A. Mei, D. H. Lackner, and M. Hetzer,
    “A change in nuclear pore complex composition regulates cell differentiation,”
    <i>Developmental Cell</i>, vol. 22, no. 2. Elsevier, pp. 446–458, 2012.
  ista: D’Angelo MA, Gomez-Cavazos JS, Mei A, Lackner DH, Hetzer M. 2012. A change
    in nuclear pore complex composition regulates cell differentiation. Developmental
    Cell. 22(2), 446–458.
  mla: D’Angelo, Maximiliano A., et al. “A Change in Nuclear Pore Complex Composition
    Regulates Cell Differentiation.” <i>Developmental Cell</i>, vol. 22, no. 2, Elsevier,
    2012, pp. 446–58, doi:<a href="https://doi.org/10.1016/j.devcel.2011.11.021">10.1016/j.devcel.2011.11.021</a>.
  short: M.A. D’Angelo, J.S. Gomez-Cavazos, A. Mei, D.H. Lackner, M. Hetzer, Developmental
    Cell 22 (2012) 446–458.
date_created: 2022-04-07T07:52:10Z
date_published: 2012-01-19T00:00:00Z
date_updated: 2022-07-18T08:53:16Z
day: '19'
doi: 10.1016/j.devcel.2011.11.021
extern: '1'
external_id:
  pmid:
  - '22264802'
intvolume: '        22'
issue: '2'
keyword:
- Developmental Biology
- Cell Biology
- General Biochemistry
- Genetics and Molecular Biology
- Molecular Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.devcel.2011.11.021
month: '01'
oa: 1
oa_version: Published Version
page: 446-458
pmid: 1
publication: Developmental Cell
publication_identifier:
  issn:
  - 1534-5807
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: A change in nuclear pore complex composition regulates cell differentiation
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 22
year: '2012'
...
---
_id: '11094'
abstract:
- lang: eng
  text: Nuclear pore complexes (NPCs) assemble at the end of mitosis during nuclear
    envelope (NE) reformation and into an intact NE as cells progress through interphase.
    Although recent studies have shown that NPC formation occurs by two different
    molecular mechanisms at two distinct cell cycle stages, little is known about
    the molecular players that mediate the fusion of the outer and inner nuclear membranes
    to form pores. In this paper, we provide evidence that the transmembrane nucleoporin
    (Nup), POM121, but not the Nup107–160 complex, is present at new pore assembly
    sites at a time that coincides with inner nuclear membrane (INM) and outer nuclear
    membrane (ONM) fusion. Overexpression of POM121 resulted in juxtaposition of the
    INM and ONM. Additionally, Sun1, an INM protein that is known to interact with
    the cytoskeleton, was specifically required for interphase assembly and localized
    with POM121 at forming pores. We propose a model in which POM121 and Sun1 interact
    transiently to promote early steps of interphase NPC assembly.
article_processing_charge: No
article_type: original
author:
- first_name: Jessica A.
  full_name: Talamas, Jessica A.
  last_name: Talamas
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Talamas JA, Hetzer M. POM121 and Sun1 play a role in early steps of interphase
    NPC assembly. <i>Journal of Cell Biology</i>. 2011;194(1):27-37. doi:<a href="https://doi.org/10.1083/jcb.201012154">10.1083/jcb.201012154</a>
  apa: Talamas, J. A., &#38; Hetzer, M. (2011). POM121 and Sun1 play a role in early
    steps of interphase NPC assembly. <i>Journal of Cell Biology</i>. Rockefeller
    University Press. <a href="https://doi.org/10.1083/jcb.201012154">https://doi.org/10.1083/jcb.201012154</a>
  chicago: Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in
    Early Steps of Interphase NPC Assembly.” <i>Journal of Cell Biology</i>. Rockefeller
    University Press, 2011. <a href="https://doi.org/10.1083/jcb.201012154">https://doi.org/10.1083/jcb.201012154</a>.
  ieee: J. A. Talamas and M. Hetzer, “POM121 and Sun1 play a role in early steps of
    interphase NPC assembly,” <i>Journal of Cell Biology</i>, vol. 194, no. 1. Rockefeller
    University Press, pp. 27–37, 2011.
  ista: Talamas JA, Hetzer M. 2011. POM121 and Sun1 play a role in early steps of
    interphase NPC assembly. Journal of Cell Biology. 194(1), 27–37.
  mla: Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in Early
    Steps of Interphase NPC Assembly.” <i>Journal of Cell Biology</i>, vol. 194, no.
    1, Rockefeller University Press, 2011, pp. 27–37, doi:<a href="https://doi.org/10.1083/jcb.201012154">10.1083/jcb.201012154</a>.
  short: J.A. Talamas, M. Hetzer, Journal of Cell Biology 194 (2011) 27–37.
date_created: 2022-04-07T07:52:18Z
date_published: 2011-07-04T00:00:00Z
date_updated: 2022-07-18T08:53:46Z
day: '04'
doi: 10.1083/jcb.201012154
extern: '1'
external_id:
  pmid:
  - '21727197'
intvolume: '       194'
issue: '1'
keyword:
- Cell Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1083/jcb.201012154
month: '07'
oa: 1
oa_version: Published Version
page: 27-37
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
  issn:
  - 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: POM121 and Sun1 play a role in early steps of interphase NPC assembly
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 194
year: '2011'
...
---
_id: '11095'
article_processing_charge: No
article_type: letter_note
author:
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
- first_name: Giacomo
  full_name: Cavalli, Giacomo
  last_name: Cavalli
citation:
  ama: Hetzer M, Cavalli G. Editorial overview. <i>Current Opinion in Cell Biology</i>.
    2011;23(3):255-257. doi:<a href="https://doi.org/10.1016/j.ceb.2011.04.013">10.1016/j.ceb.2011.04.013</a>
  apa: Hetzer, M., &#38; Cavalli, G. (2011). Editorial overview. <i>Current Opinion
    in Cell Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.ceb.2011.04.013">https://doi.org/10.1016/j.ceb.2011.04.013</a>
  chicago: Hetzer, Martin, and Giacomo Cavalli. “Editorial Overview.” <i>Current Opinion
    in Cell Biology</i>. Elsevier, 2011. <a href="https://doi.org/10.1016/j.ceb.2011.04.013">https://doi.org/10.1016/j.ceb.2011.04.013</a>.
  ieee: M. Hetzer and G. Cavalli, “Editorial overview,” <i>Current Opinion in Cell
    Biology</i>, vol. 23, no. 3. Elsevier, pp. 255–257, 2011.
  ista: Hetzer M, Cavalli G. 2011. Editorial overview. Current Opinion in Cell Biology.
    23(3), 255–257.
  mla: Hetzer, Martin, and Giacomo Cavalli. “Editorial Overview.” <i>Current Opinion
    in Cell Biology</i>, vol. 23, no. 3, Elsevier, 2011, pp. 255–57, doi:<a href="https://doi.org/10.1016/j.ceb.2011.04.013">10.1016/j.ceb.2011.04.013</a>.
  short: M. Hetzer, G. Cavalli, Current Opinion in Cell Biology 23 (2011) 255–257.
date_created: 2022-04-07T07:52:27Z
date_published: 2011-06-01T00:00:00Z
date_updated: 2022-07-18T08:39:40Z
day: '01'
doi: 10.1016/j.ceb.2011.04.013
extern: '1'
external_id:
  pmid:
  - '21592757'
intvolume: '        23'
issue: '3'
keyword:
- Cell Biology
language:
- iso: eng
month: '06'
oa_version: None
page: 255-257
pmid: 1
publication: Current Opinion in Cell Biology
publication_identifier:
  issn:
  - 0955-0674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Editorial overview
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 23
year: '2011'
...
---
_id: '11096'
abstract:
- lang: eng
  text: As the gatekeepers of the eukaryotic cell nucleus, nuclear pore complexes
    (NPCs) mediate all molecular trafficking between the nucleoplasm and the cytoplasm.
    In recent years, transport-independent functions of NPC components, nucleoporins,
    have been identified including roles in chromatin organization and gene regulation.
    Here, we summarize our current view of the NPC as a dynamic hub for the integration
    of chromatin regulation and nuclear trafficking and discuss the functional interplay
    between nucleoporins and the nuclear genome.
article_processing_charge: No
article_type: original
author:
- first_name: Yun
  full_name: Liang, Yun
  last_name: Liang
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Liang Y, Hetzer M. Functional interactions between nucleoporins and chromatin.
    <i>Current Opinion in Cell Biology</i>. 2011;23(1):65-70. doi:<a href="https://doi.org/10.1016/j.ceb.2010.09.008">10.1016/j.ceb.2010.09.008</a>
  apa: Liang, Y., &#38; Hetzer, M. (2011). Functional interactions between nucleoporins
    and chromatin. <i>Current Opinion in Cell Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.ceb.2010.09.008">https://doi.org/10.1016/j.ceb.2010.09.008</a>
  chicago: Liang, Yun, and Martin Hetzer. “Functional Interactions between Nucleoporins
    and Chromatin.” <i>Current Opinion in Cell Biology</i>. Elsevier, 2011. <a href="https://doi.org/10.1016/j.ceb.2010.09.008">https://doi.org/10.1016/j.ceb.2010.09.008</a>.
  ieee: Y. Liang and M. Hetzer, “Functional interactions between nucleoporins and
    chromatin,” <i>Current Opinion in Cell Biology</i>, vol. 23, no. 1. Elsevier,
    pp. 65–70, 2011.
  ista: Liang Y, Hetzer M. 2011. Functional interactions between nucleoporins and
    chromatin. Current Opinion in Cell Biology. 23(1), 65–70.
  mla: Liang, Yun, and Martin Hetzer. “Functional Interactions between Nucleoporins
    and Chromatin.” <i>Current Opinion in Cell Biology</i>, vol. 23, no. 1, Elsevier,
    2011, pp. 65–70, doi:<a href="https://doi.org/10.1016/j.ceb.2010.09.008">10.1016/j.ceb.2010.09.008</a>.
  short: Y. Liang, M. Hetzer, Current Opinion in Cell Biology 23 (2011) 65–70.
date_created: 2022-04-07T07:52:37Z
date_published: 2011-02-01T00:00:00Z
date_updated: 2022-07-18T08:53:48Z
day: '01'
doi: 10.1016/j.ceb.2010.09.008
extern: '1'
external_id:
  pmid:
  - '21030234'
intvolume: '        23'
issue: '1'
keyword:
- Cell Biology
language:
- iso: eng
month: '02'
oa_version: None
page: 65-70
pmid: 1
publication: Current Opinion in Cell Biology
publication_identifier:
  issn:
  - 0955-0674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Functional interactions between nucleoporins and chromatin
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 23
year: '2011'
...
---
_id: '11098'
article_processing_charge: No
article_type: original
author:
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Hetzer M. The role of the nuclear pore complex in aging of post-mitotic cells.
    <i>Aging</i>. 2010;2(2):74-75. doi:<a href="https://doi.org/10.18632/aging.100125">10.18632/aging.100125</a>
  apa: Hetzer, M. (2010). The role of the nuclear pore complex in aging of post-mitotic
    cells. <i>Aging</i>. Impact Journals. <a href="https://doi.org/10.18632/aging.100125">https://doi.org/10.18632/aging.100125</a>
  chicago: Hetzer, Martin. “The Role of the Nuclear Pore Complex in Aging of Post-Mitotic
    Cells.” <i>Aging</i>. Impact Journals, 2010. <a href="https://doi.org/10.18632/aging.100125">https://doi.org/10.18632/aging.100125</a>.
  ieee: M. Hetzer, “The role of the nuclear pore complex in aging of post-mitotic
    cells,” <i>Aging</i>, vol. 2, no. 2. Impact Journals, pp. 74–75, 2010.
  ista: Hetzer M. 2010. The role of the nuclear pore complex in aging of post-mitotic
    cells. Aging. 2(2), 74–75.
  mla: Hetzer, Martin. “The Role of the Nuclear Pore Complex in Aging of Post-Mitotic
    Cells.” <i>Aging</i>, vol. 2, no. 2, Impact Journals, 2010, pp. 74–75, doi:<a
    href="https://doi.org/10.18632/aging.100125">10.18632/aging.100125</a>.
  short: M. Hetzer, Aging 2 (2010) 74–75.
date_created: 2022-04-07T07:52:58Z
date_published: 2010-02-01T00:00:00Z
date_updated: 2022-07-18T08:54:15Z
day: '01'
doi: 10.18632/aging.100125
extern: '1'
external_id:
  pmid:
  - '20354266'
intvolume: '         2'
issue: '2'
keyword:
- Cell Biology
- Aging
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.18632/aging.100125
month: '02'
oa: 1
oa_version: Published Version
page: 74-75
pmid: 1
publication: Aging
publication_identifier:
  issn:
  - 1945-4589
publication_status: published
publisher: Impact Journals
quality_controlled: '1'
scopus_import: '1'
status: public
title: The role of the nuclear pore complex in aging of post-mitotic cells
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 2
year: '2010'
...
