---
_id: '12224'
abstract:
- lang: eng
  text: Muskelin (Mkln1) is implicated in neuronal function, regulating plasma membrane
    receptor trafficking. However, its influence on intrinsic brain activity and corresponding
    behavioral processes remains unclear. Here we show that murine <jats:italic>Mkln1</jats:italic>
    knockout causes non-habituating locomotor activity, increased exploratory drive,
    and decreased locomotor response to amphetamine. Muskelin deficiency impairs social
    novelty detection while promoting the retention of spatial reference memory and
    fear extinction recall. This is strongly mirrored in either weaker or stronger
    resting-state functional connectivity between critical circuits mediating locomotor
    exploration and cognition. We show that <jats:italic>Mkln1</jats:italic> deletion
    alters dendrite branching and spine structure, coinciding with enhanced AMPAR-mediated
    synaptic transmission but selective impairment in synaptic potentiation maintenance.
    We identify muskelin at excitatory synapses and highlight its role in regulating
    dendritic spine actin stability. Our findings point to aberrant spine actin modulation
    and changes in glutamatergic synaptic function as critical mechanisms that contribute
    to the neurobehavioral phenotype arising from <jats:italic>Mkln1</jats:italic>
    ablation.
acknowledgement: "The authors are grateful to the UKE Animal Facilities (Hamburg)
  for animal husbandry and Dr. Bastian Tiemann for his veterinary expertise and supervision
  of animal care. We thank Dr. Franco Lombino for critically reading the manuscript
  and for helpful discussion. This work was supported by grants from the Deutsche
  Forschungsgemeinschaft (DFG) (FOR2419-KN556/11-1, FOR2419-KN556/11-2, KN556/12-1)
  and the Landesforschungsförderung Hamburg (LFF-FV76) to M.K.\r\nOpen Access funding
  enabled and organized by Projekt DEAL."
article_number: '589'
article_processing_charge: No
article_type: original
author:
- first_name: Mary W
  full_name: Muhia, Mary W
  id: ab7ed20f-09f7-11eb-909c-d5d0b443ee9d
  last_name: Muhia
- first_name: PingAn
  full_name: YuanXiang, PingAn
  last_name: YuanXiang
- first_name: Jan
  full_name: Sedlacik, Jan
  last_name: Sedlacik
- first_name: Jürgen R.
  full_name: Schwarz, Jürgen R.
  last_name: Schwarz
- first_name: Frank F.
  full_name: Heisler, Frank F.
  last_name: Heisler
- first_name: Kira V.
  full_name: Gromova, Kira V.
  last_name: Gromova
- first_name: Edda
  full_name: Thies, Edda
  last_name: Thies
- first_name: Petra
  full_name: Breiden, Petra
  last_name: Breiden
- first_name: Yvonne
  full_name: Pechmann, Yvonne
  last_name: Pechmann
- first_name: Michael R.
  full_name: Kreutz, Michael R.
  last_name: Kreutz
- first_name: Matthias
  full_name: Kneussel, Matthias
  last_name: Kneussel
citation:
  ama: Muhia MW, YuanXiang P, Sedlacik J, et al. Muskelin regulates actin-dependent
    synaptic changes and intrinsic brain activity relevant to behavioral and cognitive
    processes. <i>Communications Biology</i>. 2022;5. doi:<a href="https://doi.org/10.1038/s42003-022-03446-1">10.1038/s42003-022-03446-1</a>
  apa: Muhia, M. W., YuanXiang, P., Sedlacik, J., Schwarz, J. R., Heisler, F. F.,
    Gromova, K. V., … Kneussel, M. (2022). Muskelin regulates actin-dependent synaptic
    changes and intrinsic brain activity relevant to behavioral and cognitive processes.
    <i>Communications Biology</i>. Springer Nature. <a href="https://doi.org/10.1038/s42003-022-03446-1">https://doi.org/10.1038/s42003-022-03446-1</a>
  chicago: Muhia, Mary W, PingAn YuanXiang, Jan Sedlacik, Jürgen R. Schwarz, Frank
    F. Heisler, Kira V. Gromova, Edda Thies, et al. “Muskelin Regulates Actin-Dependent
    Synaptic Changes and Intrinsic Brain Activity Relevant to Behavioral and Cognitive
    Processes.” <i>Communications Biology</i>. Springer Nature, 2022. <a href="https://doi.org/10.1038/s42003-022-03446-1">https://doi.org/10.1038/s42003-022-03446-1</a>.
  ieee: M. W. Muhia <i>et al.</i>, “Muskelin regulates actin-dependent synaptic changes
    and intrinsic brain activity relevant to behavioral and cognitive processes,”
    <i>Communications Biology</i>, vol. 5. Springer Nature, 2022.
  ista: Muhia MW, YuanXiang P, Sedlacik J, Schwarz JR, Heisler FF, Gromova KV, Thies
    E, Breiden P, Pechmann Y, Kreutz MR, Kneussel M. 2022. Muskelin regulates actin-dependent
    synaptic changes and intrinsic brain activity relevant to behavioral and cognitive
    processes. Communications Biology. 5, 589.
  mla: Muhia, Mary W., et al. “Muskelin Regulates Actin-Dependent Synaptic Changes
    and Intrinsic Brain Activity Relevant to Behavioral and Cognitive Processes.”
    <i>Communications Biology</i>, vol. 5, 589, Springer Nature, 2022, doi:<a href="https://doi.org/10.1038/s42003-022-03446-1">10.1038/s42003-022-03446-1</a>.
  short: M.W. Muhia, P. YuanXiang, J. Sedlacik, J.R. Schwarz, F.F. Heisler, K.V. Gromova,
    E. Thies, P. Breiden, Y. Pechmann, M.R. Kreutz, M. Kneussel, Communications Biology
    5 (2022).
date_created: 2023-01-16T09:48:19Z
date_published: 2022-06-15T00:00:00Z
date_updated: 2023-08-04T09:25:59Z
day: '15'
ddc:
- '570'
department:
- _id: PreCl
doi: 10.1038/s42003-022-03446-1
external_id:
  isi:
  - '000811777900003'
file:
- access_level: open_access
  checksum: bd95be1e77090208b79bc45ea8785d0b
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-27T08:23:46Z
  date_updated: 2023-01-27T08:23:46Z
  file_id: '12417'
  file_name: 2022_CommBiology_Muhia.pdf
  file_size: 3968356
  relation: main_file
  success: 1
file_date_updated: 2023-01-27T08:23:46Z
has_accepted_license: '1'
intvolume: '         5'
isi: 1
keyword:
- General Agricultural and Biological Sciences
- General Biochemistry
- Genetics and Molecular Biology
- Medicine (miscellaneous)
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: Communications Biology
publication_identifier:
  issn:
  - 2399-3642
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Muskelin regulates actin-dependent synaptic changes and intrinsic brain activity
  relevant to behavioral and cognitive processes
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 5
year: '2022'
...
---
_id: '10310'
abstract:
- lang: eng
  text: A high-resolution structure of trimeric cyanobacterial Photosystem I (PSI)
    from Thermosynechococcus elongatus was reported as the first atomic model of PSI
    almost 20 years ago. However, the monomeric PSI structure has not yet been reported
    despite long-standing interest in its structure and extensive spectroscopic characterization
    of the loss of red chlorophylls upon monomerization. Here, we describe the structure
    of monomeric PSI from Thermosynechococcus elongatus BP-1. Comparison with the
    trimer structure gave detailed insights into monomerization-induced changes in
    both the central trimerization domain and the peripheral regions of the complex.
    Monomerization-induced loss of red chlorophylls is assigned to a cluster of chlorophylls
    adjacent to PsaX. Based on our findings, we propose a role of PsaX in the stabilization
    of red chlorophylls and that lipids of the surrounding membrane present a major
    source of thermal energy for uphill excitation energy transfer from red chlorophylls
    to P700.
acknowledgement: We are grateful for additional support and valuable scientific input
  for this project by Yuko Misumi, Jiannan Li, Hisako Kubota-Kawai, Takeshi Kawabata,
  Mian Wu, Eiki Yamashita, Atsushi Nakagawa, Volker Hartmann, Melanie Völkel and Matthias
  Rögner. Parts of this research were funded by the German Research Council (DFG)
  within the framework of GRK 2341 (Microbial Substrate Conversion) to M.M.N., the
  Platform Project for Supporting Drug Discovery and Life Science Research [Basis
  for Supporting Innovative Drug Discovery and Life Science Research (BINDS)] from
  AMED under grant number JP20am0101117 (K.N.), JP16K07266 to Atsunori Oshima and
  C.G., a Grants-in-Aid for Scientific Research under grant number JP 25000013 (K.N.),
  17H03647 (C.G.) and 16H06560 (G.K.) from MEXT-KAKENHI, the International Joint Research
  Promotion Program from Osaka University to M.M.N., C.G. and G.K., and the Cyclic
  Innovation for Clinical Empowerment (CiCLE) Grant Number JP17pc0101020 from AMED
  to K.N. and G.K.
article_number: '304'
article_processing_charge: No
article_type: original
author:
- first_name: Mehmet Orkun
  full_name: Çoruh, Mehmet Orkun
  id: d25163e5-8d53-11eb-a251-e6dd8ea1b8ef
  last_name: Çoruh
  orcid: 0000-0002-3219-2022
- first_name: Anna
  full_name: Frank, Anna
  last_name: Frank
- first_name: Hideaki
  full_name: Tanaka, Hideaki
  last_name: Tanaka
- first_name: Akihiro
  full_name: Kawamoto, Akihiro
  last_name: Kawamoto
- first_name: Eithar
  full_name: El-Mohsnawy, Eithar
  last_name: El-Mohsnawy
- first_name: Takayuki
  full_name: Kato, Takayuki
  last_name: Kato
- first_name: Keiichi
  full_name: Namba, Keiichi
  last_name: Namba
- first_name: Christoph
  full_name: Gerle, Christoph
  last_name: Gerle
- first_name: Marc M.
  full_name: Nowaczyk, Marc M.
  last_name: Nowaczyk
- first_name: Genji
  full_name: Kurisu, Genji
  last_name: Kurisu
citation:
  ama: Çoruh MO, Frank A, Tanaka H, et al. Cryo-EM structure of a functional monomeric
    Photosystem I from Thermosynechococcus elongatus reveals red chlorophyll cluster.
    <i>Communications Biology</i>. 2021;4(1). doi:<a href="https://doi.org/10.1038/s42003-021-01808-9">10.1038/s42003-021-01808-9</a>
  apa: Çoruh, M. O., Frank, A., Tanaka, H., Kawamoto, A., El-Mohsnawy, E., Kato, T.,
    … Kurisu, G. (2021). Cryo-EM structure of a functional monomeric Photosystem I
    from Thermosynechococcus elongatus reveals red chlorophyll cluster. <i>Communications
    Biology</i>. Springer . <a href="https://doi.org/10.1038/s42003-021-01808-9">https://doi.org/10.1038/s42003-021-01808-9</a>
  chicago: Çoruh, Mehmet Orkun, Anna Frank, Hideaki Tanaka, Akihiro Kawamoto, Eithar
    El-Mohsnawy, Takayuki Kato, Keiichi Namba, Christoph Gerle, Marc M. Nowaczyk,
    and Genji Kurisu. “Cryo-EM Structure of a Functional Monomeric Photosystem I from
    Thermosynechococcus Elongatus Reveals Red Chlorophyll Cluster.” <i>Communications
    Biology</i>. Springer , 2021. <a href="https://doi.org/10.1038/s42003-021-01808-9">https://doi.org/10.1038/s42003-021-01808-9</a>.
  ieee: M. O. Çoruh <i>et al.</i>, “Cryo-EM structure of a functional monomeric Photosystem
    I from Thermosynechococcus elongatus reveals red chlorophyll cluster,” <i>Communications
    Biology</i>, vol. 4, no. 1. Springer , 2021.
  ista: Çoruh MO, Frank A, Tanaka H, Kawamoto A, El-Mohsnawy E, Kato T, Namba K, Gerle
    C, Nowaczyk MM, Kurisu G. 2021. Cryo-EM structure of a functional monomeric Photosystem
    I from Thermosynechococcus elongatus reveals red chlorophyll cluster. Communications
    Biology. 4(1), 304.
  mla: Çoruh, Mehmet Orkun, et al. “Cryo-EM Structure of a Functional Monomeric Photosystem
    I from Thermosynechococcus Elongatus Reveals Red Chlorophyll Cluster.” <i>Communications
    Biology</i>, vol. 4, no. 1, 304, Springer , 2021, doi:<a href="https://doi.org/10.1038/s42003-021-01808-9">10.1038/s42003-021-01808-9</a>.
  short: M.O. Çoruh, A. Frank, H. Tanaka, A. Kawamoto, E. El-Mohsnawy, T. Kato, K.
    Namba, C. Gerle, M.M. Nowaczyk, G. Kurisu, Communications Biology 4 (2021).
date_created: 2021-11-19T11:37:29Z
date_published: 2021-03-08T00:00:00Z
date_updated: 2023-08-14T11:51:19Z
day: '08'
ddc:
- '570'
department:
- _id: LeSa
doi: 10.1038/s42003-021-01808-9
external_id:
  isi:
  - '000627440700001'
  pmid:
  - '33686186'
file:
- access_level: open_access
  checksum: 8ffd39f2bba7152a2441802ff313bf0b
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-11-19T15:09:18Z
  date_updated: 2021-11-19T15:09:18Z
  file_id: '10318'
  file_name: 2021_CommBio_Çoruh.pdf
  file_size: 6030261
  relation: main_file
  success: 1
file_date_updated: 2021-11-19T15:09:18Z
has_accepted_license: '1'
intvolume: '         4'
isi: 1
issue: '1'
keyword:
- general agricultural and biological Sciences
- general biochemistry
- genetics and molecular biology
- medicine (miscellaneous)
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: Communications Biology
publication_identifier:
  issn:
  - 2399-3642
publication_status: published
publisher: 'Springer '
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cryo-EM structure of a functional monomeric Photosystem I from Thermosynechococcus
  elongatus reveals red chlorophyll cluster
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 4
year: '2021'
...
---
_id: '7097'
abstract:
- lang: eng
  text: Early endosomes, also called sorting endosomes, are known to mature into late
    endosomesvia the Rab5-mediated endolysosomal trafficking pathway. Thus, early
    endosome existence isthought to be maintained by the continual fusion of transport
    vesicles from the plasmamembrane and thetrans-Golgi network (TGN). Here we show
    instead that endocytosis isdispensable and post-Golgi vesicle transport is crucial
    for the formation of endosomes andthe subsequent endolysosomal traffic regulated
    by yeast Rab5 Vps21p. Fittingly, all threeproteins required for endosomal nucleotide
    exchange on Vps21p arefirst recruited to theTGN  before  transport  to  the  endosome,  namely  the  GEF  Vps9p
    and  the  epsin-relatedadaptors Ent3/5p. The TGN recruitment of these components
    is distinctly controlled, withVps9p appearing to require the Arf1p GTPase, and
    the Rab11s, Ypt31p/32p. These resultsprovide a different view of endosome formation
    and identify the TGN as a critical location forregulating progress through the
    endolysosomal trafficking pathway.
article_number: '419'
article_processing_charge: No
article_type: original
author:
- first_name: Makoto
  full_name: Nagano, Makoto
  last_name: Nagano
- first_name: Junko Y.
  full_name: Toshima, Junko Y.
  last_name: Toshima
- first_name: Daria E
  full_name: Siekhaus, Daria E
  id: 3D224B9E-F248-11E8-B48F-1D18A9856A87
  last_name: Siekhaus
  orcid: 0000-0001-8323-8353
- first_name: Jiro
  full_name: Toshima, Jiro
  last_name: Toshima
citation:
  ama: Nagano M, Toshima JY, Siekhaus DE, Toshima J. Rab5-mediated endosome formation
    is regulated at the trans-Golgi network. <i>Communications Biology</i>. 2019;2(1).
    doi:<a href="https://doi.org/10.1038/s42003-019-0670-5">10.1038/s42003-019-0670-5</a>
  apa: Nagano, M., Toshima, J. Y., Siekhaus, D. E., &#38; Toshima, J. (2019). Rab5-mediated
    endosome formation is regulated at the trans-Golgi network. <i>Communications
    Biology</i>. Springer Nature. <a href="https://doi.org/10.1038/s42003-019-0670-5">https://doi.org/10.1038/s42003-019-0670-5</a>
  chicago: Nagano, Makoto, Junko Y. Toshima, Daria E Siekhaus, and Jiro Toshima. “Rab5-Mediated
    Endosome Formation Is Regulated at the Trans-Golgi Network.” <i>Communications
    Biology</i>. Springer Nature, 2019. <a href="https://doi.org/10.1038/s42003-019-0670-5">https://doi.org/10.1038/s42003-019-0670-5</a>.
  ieee: M. Nagano, J. Y. Toshima, D. E. Siekhaus, and J. Toshima, “Rab5-mediated endosome
    formation is regulated at the trans-Golgi network,” <i>Communications Biology</i>,
    vol. 2, no. 1. Springer Nature, 2019.
  ista: Nagano M, Toshima JY, Siekhaus DE, Toshima J. 2019. Rab5-mediated endosome
    formation is regulated at the trans-Golgi network. Communications Biology. 2(1),
    419.
  mla: Nagano, Makoto, et al. “Rab5-Mediated Endosome Formation Is Regulated at the
    Trans-Golgi Network.” <i>Communications Biology</i>, vol. 2, no. 1, 419, Springer
    Nature, 2019, doi:<a href="https://doi.org/10.1038/s42003-019-0670-5">10.1038/s42003-019-0670-5</a>.
  short: M. Nagano, J.Y. Toshima, D.E. Siekhaus, J. Toshima, Communications Biology
    2 (2019).
date_created: 2019-11-25T07:55:01Z
date_published: 2019-11-15T00:00:00Z
date_updated: 2023-08-30T07:27:55Z
day: '15'
ddc:
- '570'
department:
- _id: DaSi
doi: 10.1038/s42003-019-0670-5
external_id:
  isi:
  - '000496767800005'
file:
- access_level: open_access
  checksum: c63c69a264fc8a0e52f2b0d482f3bdae
  content_type: application/pdf
  creator: dernst
  date_created: 2019-11-25T07:58:05Z
  date_updated: 2020-07-14T12:47:49Z
  file_id: '7098'
  file_name: 2019_CommunicBiology_Nagano.pdf
  file_size: 2626069
  relation: main_file
file_date_updated: 2020-07-14T12:47:49Z
has_accepted_license: '1'
intvolume: '         2'
isi: 1
issue: '1'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
publication: Communications Biology
publication_identifier:
  issn:
  - 2399-3642
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Rab5-mediated endosome formation is regulated at the trans-Golgi network
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 2
year: '2019'
...
---
_id: '7210'
abstract:
- lang: eng
  text: The rate of biological evolution depends on the fixation probability and on
    the fixation time of new mutants. Intensive research has focused on identifying
    population structures that augment the fixation probability of advantageous mutants.
    But these amplifiers of natural selection typically increase fixation time. Here
    we study population structures that achieve a tradeoff between fixation probability
    and time. First, we show that no amplifiers can have an asymptotically lower absorption
    time than the well-mixed population. Then we design population structures that
    substantially augment the fixation probability with just a minor increase in fixation
    time. Finally, we show that those structures enable higher effective rate of evolution
    than the well-mixed population provided that the rate of generating advantageous
    mutants is relatively low. Our work sheds light on how population structure affects
    the rate of evolution. Moreover, our structures could be useful for lab-based,
    medical, or industrial applications of evolutionary optimization.
article_number: '138'
article_processing_charge: No
article_type: original
author:
- first_name: Josef
  full_name: Tkadlec, Josef
  id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
  last_name: Tkadlec
  orcid: 0000-0002-1097-9684
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin A.
  full_name: Nowak, Martin A.
  last_name: Nowak
citation:
  ama: Tkadlec J, Pavlogiannis A, Chatterjee K, Nowak MA. Population structure determines
    the tradeoff between fixation probability and fixation time. <i>Communications
    Biology</i>. 2019;2. doi:<a href="https://doi.org/10.1038/s42003-019-0373-y">10.1038/s42003-019-0373-y</a>
  apa: Tkadlec, J., Pavlogiannis, A., Chatterjee, K., &#38; Nowak, M. A. (2019). Population
    structure determines the tradeoff between fixation probability and fixation time.
    <i>Communications Biology</i>. Springer Nature. <a href="https://doi.org/10.1038/s42003-019-0373-y">https://doi.org/10.1038/s42003-019-0373-y</a>
  chicago: Tkadlec, Josef, Andreas Pavlogiannis, Krishnendu Chatterjee, and Martin
    A. Nowak. “Population Structure Determines the Tradeoff between Fixation Probability
    and Fixation Time.” <i>Communications Biology</i>. Springer Nature, 2019. <a href="https://doi.org/10.1038/s42003-019-0373-y">https://doi.org/10.1038/s42003-019-0373-y</a>.
  ieee: J. Tkadlec, A. Pavlogiannis, K. Chatterjee, and M. A. Nowak, “Population structure
    determines the tradeoff between fixation probability and fixation time,” <i>Communications
    Biology</i>, vol. 2. Springer Nature, 2019.
  ista: Tkadlec J, Pavlogiannis A, Chatterjee K, Nowak MA. 2019. Population structure
    determines the tradeoff between fixation probability and fixation time. Communications
    Biology. 2, 138.
  mla: Tkadlec, Josef, et al. “Population Structure Determines the Tradeoff between
    Fixation Probability and Fixation Time.” <i>Communications Biology</i>, vol. 2,
    138, Springer Nature, 2019, doi:<a href="https://doi.org/10.1038/s42003-019-0373-y">10.1038/s42003-019-0373-y</a>.
  short: J. Tkadlec, A. Pavlogiannis, K. Chatterjee, M.A. Nowak, Communications Biology
    2 (2019).
date_created: 2019-12-23T13:36:50Z
date_published: 2019-04-23T00:00:00Z
date_updated: 2023-09-07T13:19:22Z
day: '23'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1038/s42003-019-0373-y
ec_funded: 1
external_id:
  isi:
  - '000465425700006'
  pmid:
  - '31044163'
file:
- access_level: open_access
  checksum: d1a69bfe73767e4246f0a38e4e1554dd
  content_type: application/pdf
  creator: dernst
  date_created: 2019-12-23T13:39:30Z
  date_updated: 2020-07-14T12:47:53Z
  file_id: '7211'
  file_name: 2019_CommBio_Tkadlec.pdf
  file_size: 1670274
  relation: main_file
file_date_updated: 2020-07-14T12:47:53Z
has_accepted_license: '1'
intvolume: '         2'
isi: 1
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication: Communications Biology
publication_identifier:
  issn:
  - 2399-3642
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
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  - id: '7196'
    relation: part_of_dissertation
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scopus_import: '1'
status: public
title: Population structure determines the tradeoff between fixation probability and
  fixation time
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 2
year: '2019'
...
---
_id: '5751'
abstract:
- lang: eng
  text: 'Because of the intrinsic randomness of the evolutionary process, a mutant
    with a fitness advantage has some chance to be selected but no certainty. Any
    experiment that searches for advantageous mutants will lose many of them due to
    random drift. It is therefore of great interest to find population structures
    that improve the odds of advantageous mutants. Such structures are called amplifiers
    of natural selection: they increase the probability that advantageous mutants
    are selected. Arbitrarily strong amplifiers guarantee the selection of advantageous
    mutants, even for very small fitness advantage. Despite intensive research over
    the past decade, arbitrarily strong amplifiers have remained rare. Here we show
    how to construct a large variety of them. Our amplifiers are so simple that they
    could be useful in biotechnology, when optimizing biological molecules, or as
    a diagnostic tool, when searching for faster dividing cells or viruses. They could
    also occur in natural population structures.'
article_number: '71'
article_processing_charge: No
author:
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
- first_name: Josef
  full_name: Tkadlec, Josef
  id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
  last_name: Tkadlec
  orcid: 0000-0002-1097-9684
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin A.
  full_name: Nowak, Martin A.
  last_name: Nowak
citation:
  ama: Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak MA. Construction of arbitrarily
    strong amplifiers of natural selection using evolutionary graph theory. <i>Communications
    Biology</i>. 2018;1(1). doi:<a href="https://doi.org/10.1038/s42003-018-0078-7">10.1038/s42003-018-0078-7</a>
  apa: Pavlogiannis, A., Tkadlec, J., Chatterjee, K., &#38; Nowak, M. A. (2018). Construction
    of arbitrarily strong amplifiers of natural selection using evolutionary graph
    theory. <i>Communications Biology</i>. Springer Nature. <a href="https://doi.org/10.1038/s42003-018-0078-7">https://doi.org/10.1038/s42003-018-0078-7</a>
  chicago: Pavlogiannis, Andreas, Josef Tkadlec, Krishnendu Chatterjee, and Martin
    A. Nowak. “Construction of Arbitrarily Strong Amplifiers of Natural Selection
    Using Evolutionary Graph Theory.” <i>Communications Biology</i>. Springer Nature,
    2018. <a href="https://doi.org/10.1038/s42003-018-0078-7">https://doi.org/10.1038/s42003-018-0078-7</a>.
  ieee: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, and M. A. Nowak, “Construction
    of arbitrarily strong amplifiers of natural selection using evolutionary graph
    theory,” <i>Communications Biology</i>, vol. 1, no. 1. Springer Nature, 2018.
  ista: Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak MA. 2018. Construction of arbitrarily
    strong amplifiers of natural selection using evolutionary graph theory. Communications
    Biology. 1(1), 71.
  mla: Pavlogiannis, Andreas, et al. “Construction of Arbitrarily Strong Amplifiers
    of Natural Selection Using Evolutionary Graph Theory.” <i>Communications Biology</i>,
    vol. 1, no. 1, 71, Springer Nature, 2018, doi:<a href="https://doi.org/10.1038/s42003-018-0078-7">10.1038/s42003-018-0078-7</a>.
  short: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M.A. Nowak, Communications Biology
    1 (2018).
date_created: 2018-12-18T13:22:58Z
date_published: 2018-06-14T00:00:00Z
date_updated: 2024-02-21T13:48:42Z
day: '14'
ddc:
- '004'
- '519'
- '576'
department:
- _id: KrCh
doi: 10.1038/s42003-018-0078-7
ec_funded: 1
external_id:
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  - '000461126500071'
file:
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file_date_updated: 2020-07-14T12:47:10Z
has_accepted_license: '1'
intvolume: '         1'
isi: 1
issue: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication: Communications Biology
publication_identifier:
  issn:
  - 2399-3642
publication_status: published
publisher: Springer Nature
pubrep_id: '1045'
quality_controlled: '1'
related_material:
  record:
  - id: '7196'
    relation: part_of_dissertation
    status: public
  - id: '5559'
    relation: popular_science
    status: public
scopus_import: '1'
status: public
title: Construction of arbitrarily strong amplifiers of natural selection using evolutionary
  graph theory
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 1
year: '2018'
...
