[{"status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","volume":7,"type":"journal_article","date_published":"2016-07-22T00:00:00Z","citation":{"ieee":"M. K. Chan <i>et al.</i>, “Single reconstructed Fermi surface pocket in an underdoped single-layer cuprate superconductor,” <i>Nature Communications</i>, vol. 7. Springer Nature, 2016.","chicago":"Chan, M. K., N. Harrison, R. D. McDonald, B. J. Ramshaw, Kimberly A Modic, N. Barišić, and M. Greven. “Single Reconstructed Fermi Surface Pocket in an Underdoped Single-Layer Cuprate Superconductor.” <i>Nature Communications</i>. Springer Nature, 2016. <a href=\"https://doi.org/10.1038/ncomms12244\">https://doi.org/10.1038/ncomms12244</a>.","ama":"Chan MK, Harrison N, McDonald RD, et al. Single reconstructed Fermi surface pocket in an underdoped single-layer cuprate superconductor. <i>Nature Communications</i>. 2016;7. doi:<a href=\"https://doi.org/10.1038/ncomms12244\">10.1038/ncomms12244</a>","apa":"Chan, M. K., Harrison, N., McDonald, R. D., Ramshaw, B. J., Modic, K. A., Barišić, N., &#38; Greven, M. (2016). Single reconstructed Fermi surface pocket in an underdoped single-layer cuprate superconductor. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/ncomms12244\">https://doi.org/10.1038/ncomms12244</a>","ista":"Chan MK, Harrison N, McDonald RD, Ramshaw BJ, Modic KA, Barišić N, Greven M. 2016. Single reconstructed Fermi surface pocket in an underdoped single-layer cuprate superconductor. Nature Communications. 7, 12244.","mla":"Chan, M. K., et al. “Single Reconstructed Fermi Surface Pocket in an Underdoped Single-Layer Cuprate Superconductor.” <i>Nature Communications</i>, vol. 7, 12244, Springer Nature, 2016, doi:<a href=\"https://doi.org/10.1038/ncomms12244\">10.1038/ncomms12244</a>.","short":"M.K. Chan, N. Harrison, R.D. McDonald, B.J. Ramshaw, K.A. Modic, N. Barišić, M. Greven, Nature Communications 7 (2016)."},"year":"2016","date_updated":"2021-01-12T08:11:41Z","abstract":[{"text":"The observation of a reconstructed Fermi surface via quantum oscillations in hole-doped cuprates opened a path towards identifying broken symmetry states in the pseudogap regime. However, such an identification has remained inconclusive due to the multi-frequency quantum oscillation spectra and complications accounting for bilayer effects in most studies. We overcome these impediments with high-resolution measurements on the structurally simpler cuprate HgBa2CuO4+δ (Hg1201), which features one CuO2 plane per primitive unit cell. We find only a single oscillatory component with no signatures of magnetic breakdown tunnelling to additional orbits. Therefore, the Fermi surface comprises a single quasi-two-dimensional pocket. Quantitative modelling of these results indicates that a biaxial charge density wave within each CuO2 plane is responsible for the reconstruction and rules out criss-crossed charge stripes between layers as a viable alternative in Hg1201. Lastly, we determine that the characteristic gap between reconstructed pockets is a significant fraction of the pseudogap energy.","lang":"eng"}],"publication_identifier":{"issn":["2041-1723"]},"day":"22","doi":"10.1038/ncomms12244","language":[{"iso":"eng"}],"quality_controlled":"1","article_type":"original","publisher":"Springer Nature","author":[{"full_name":"Chan, M. K.","first_name":"M. K.","last_name":"Chan"},{"first_name":"N.","last_name":"Harrison","full_name":"Harrison, N."},{"full_name":"McDonald, R. D.","first_name":"R. D.","last_name":"McDonald"},{"first_name":"B. J.","last_name":"Ramshaw","full_name":"Ramshaw, B. J."},{"id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425","last_name":"Modic","first_name":"Kimberly A","full_name":"Modic, Kimberly A","orcid":"0000-0001-9760-3147"},{"first_name":"N.","last_name":"Barišić","full_name":"Barišić, N."},{"last_name":"Greven","first_name":"M.","full_name":"Greven, M."}],"_id":"7069","publication":"Nature Communications","article_number":"12244","intvolume":"         7","title":"Single reconstructed Fermi surface pocket in an underdoped single-layer cuprate superconductor","month":"07","date_created":"2019-11-19T13:21:23Z","article_processing_charge":"No","publication_status":"published","oa_version":"Published Version"},{"date_published":"2015-10-05T00:00:00Z","type":"journal_article","date_updated":"2021-01-12T08:19:24Z","year":"2015","citation":{"ama":"Ma P, Xue Y, Coquelle N, et al. Observing the overall rocking motion of a protein in a crystal. <i>Nature Communications</i>. 2015;6. doi:<a href=\"https://doi.org/10.1038/ncomms9361\">10.1038/ncomms9361</a>","apa":"Ma, P., Xue, Y., Coquelle, N., Haller, J. D., Yuwen, T., Ayala, I., … Schanda, P. (2015). Observing the overall rocking motion of a protein in a crystal. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/ncomms9361\">https://doi.org/10.1038/ncomms9361</a>","ieee":"P. Ma <i>et al.</i>, “Observing the overall rocking motion of a protein in a crystal,” <i>Nature Communications</i>, vol. 6. Springer Nature, 2015.","chicago":"Ma, Peixiang, Yi Xue, Nicolas Coquelle, Jens D. Haller, Tairan Yuwen, Isabel Ayala, Oleg Mikhailovskii, et al. “Observing the Overall Rocking Motion of a Protein in a Crystal.” <i>Nature Communications</i>. Springer Nature, 2015. <a href=\"https://doi.org/10.1038/ncomms9361\">https://doi.org/10.1038/ncomms9361</a>.","mla":"Ma, Peixiang, et al. “Observing the Overall Rocking Motion of a Protein in a Crystal.” <i>Nature Communications</i>, vol. 6, 8361, Springer Nature, 2015, doi:<a href=\"https://doi.org/10.1038/ncomms9361\">10.1038/ncomms9361</a>.","short":"P. Ma, Y. Xue, N. Coquelle, J.D. Haller, T. Yuwen, I. Ayala, O. Mikhailovskii, D. Willbold, J.-P. Colletier, N.R. Skrynnikov, P. Schanda, Nature Communications 6 (2015).","ista":"Ma P, Xue Y, Coquelle N, Haller JD, Yuwen T, Ayala I, Mikhailovskii O, Willbold D, Colletier J-P, Skrynnikov NR, Schanda P. 2015. Observing the overall rocking motion of a protein in a crystal. Nature Communications. 6, 8361."},"abstract":[{"lang":"eng","text":"The large majority of three-dimensional structures of biological macromolecules have been determined by X-ray diffraction of crystalline samples. High-resolution structure determination crucially depends on the homogeneity of the protein crystal. Overall ‘rocking’ motion of molecules in the crystal is expected to influence diffraction quality, and such motion may therefore affect the process of solving crystal structures. Yet, so far overall molecular motion has not directly been observed in protein crystals, and the timescale of such dynamics remains unclear. Here we use solid-state NMR, X-ray diffraction methods and μs-long molecular dynamics simulations to directly characterize the rigid-body motion of a protein in different crystal forms. For ubiquitin crystals investigated in this study we determine the range of possible correlation times of rocking motion, 0.1–100 μs. The amplitude of rocking varies from one crystal form to another and is correlated with the resolution obtainable in X-ray diffraction experiments."}],"doi":"10.1038/ncomms9361","publication_identifier":{"issn":["2041-1723"]},"day":"05","extern":"1","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":6,"author":[{"full_name":"Ma, Peixiang","first_name":"Peixiang","last_name":"Ma"},{"full_name":"Xue, Yi","last_name":"Xue","first_name":"Yi"},{"last_name":"Coquelle","first_name":"Nicolas","full_name":"Coquelle, Nicolas"},{"full_name":"Haller, Jens D.","last_name":"Haller","first_name":"Jens D."},{"full_name":"Yuwen, Tairan","first_name":"Tairan","last_name":"Yuwen"},{"full_name":"Ayala, Isabel","first_name":"Isabel","last_name":"Ayala"},{"full_name":"Mikhailovskii, Oleg","first_name":"Oleg","last_name":"Mikhailovskii"},{"full_name":"Willbold, Dieter","last_name":"Willbold","first_name":"Dieter"},{"last_name":"Colletier","first_name":"Jacques-Philippe","full_name":"Colletier, Jacques-Philippe"},{"full_name":"Skrynnikov, Nikolai R.","last_name":"Skrynnikov","first_name":"Nikolai R."},{"orcid":"0000-0002-9350-7606","full_name":"Schanda, Paul","first_name":"Paul","last_name":"Schanda","id":"7B541462-FAF6-11E9-A490-E8DFE5697425"}],"publication":"Nature Communications","_id":"8456","title":"Observing the overall rocking motion of a protein in a crystal","month":"10","article_number":"8361","intvolume":"         6","oa_version":"Published Version","publication_status":"published","date_created":"2020-09-18T10:07:36Z","article_processing_charge":"No","language":[{"iso":"eng"}],"keyword":["General Biochemistry","Genetics and Molecular Biology","General Physics and Astronomy","General Chemistry"],"quality_controlled":"1","article_type":"original","publisher":"Springer Nature"},{"language":[{"iso":"eng"}],"article_number":"4203","month":"06","oa_version":"Published Version","has_accepted_license":"1","publication":"Nature Communications","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"access_level":"open_access","relation":"main_file","file_id":"7113","creator":"dernst","date_created":"2019-11-26T12:44:23Z","checksum":"d290f0bfa93c5169cc6c8086874c5a78","file_size":4832820,"date_updated":"2020-07-14T12:47:48Z","file_name":"2014_NatureComm_Modic.pdf","content_type":"application/pdf"}],"oa":1,"publication_identifier":{"issn":["2041-1723"]},"type":"journal_article","date_published":"2014-06-27T00:00:00Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"article_type":"original","publisher":"Springer Science and Business Media LLC","file_date_updated":"2020-07-14T12:47:48Z","quality_controlled":"1","intvolume":"         5","title":"Realization of a three-dimensional spin–anisotropic harmonic honeycomb iridate","date_created":"2019-11-19T13:22:39Z","article_processing_charge":"No","publication_status":"published","author":[{"orcid":"0000-0001-9760-3147","full_name":"Modic, Kimberly A","first_name":"Kimberly A","last_name":"Modic","id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425"},{"last_name":"Smidt","first_name":"Tess E.","full_name":"Smidt, Tess E."},{"first_name":"Itamar","last_name":"Kimchi","full_name":"Kimchi, Itamar"},{"full_name":"Breznay, Nicholas P.","last_name":"Breznay","first_name":"Nicholas P."},{"first_name":"Alun","last_name":"Biffin","full_name":"Biffin, Alun"},{"first_name":"Sungkyun","last_name":"Choi","full_name":"Choi, Sungkyun"},{"last_name":"Johnson","first_name":"Roger D.","full_name":"Johnson, Roger D."},{"full_name":"Coldea, Radu","last_name":"Coldea","first_name":"Radu"},{"last_name":"Watkins-Curry","first_name":"Pilanda","full_name":"Watkins-Curry, Pilanda"},{"full_name":"McCandless, Gregory T.","last_name":"McCandless","first_name":"Gregory T."},{"first_name":"Julia Y.","last_name":"Chan","full_name":"Chan, Julia Y."},{"full_name":"Gandara, Felipe","first_name":"Felipe","last_name":"Gandara"},{"full_name":"Islam, Z.","first_name":"Z.","last_name":"Islam"},{"full_name":"Vishwanath, Ashvin","last_name":"Vishwanath","first_name":"Ashvin"},{"first_name":"Arkady","last_name":"Shekhter","full_name":"Shekhter, Arkady"},{"full_name":"McDonald, Ross D.","last_name":"McDonald","first_name":"Ross D."},{"last_name":"Analytis","first_name":"James G.","full_name":"Analytis, James G."}],"_id":"7071","ddc":["530"],"extern":"1","volume":5,"abstract":[{"lang":"eng","text":"Spin and orbital quantum numbers play a key role in the physics of Mott insulators, but in most systems they are connected only indirectly—via the Pauli exclusion principle and the Coulomb interaction. Iridium-based oxides (iridates) introduce strong spin–orbit coupling directly, such that these numbers become entwined together and the Mott physics attains a strong orbital character. In the layered honeycomb iridates this is thought to generate highly spin–anisotropic magnetic interactions, coupling the spin to a given spatial direction of exchange and leading to strongly frustrated magnetism. Here we report a new iridate structure that has the same local connectivity as the layered honeycomb and exhibits striking evidence for highly spin–anisotropic exchange. The basic structural units of this material suggest that a new family of three-dimensional structures could exist, the ‘harmonic honeycomb’ iridates, of which the present compound is the first example."}],"day":"27","doi":"10.1038/ncomms5203","citation":{"ista":"Modic KA, Smidt TE, Kimchi I, Breznay NP, Biffin A, Choi S, Johnson RD, Coldea R, Watkins-Curry P, McCandless GT, Chan JY, Gandara F, Islam Z, Vishwanath A, Shekhter A, McDonald RD, Analytis JG. 2014. Realization of a three-dimensional spin–anisotropic harmonic honeycomb iridate. Nature Communications. 5, 4203.","mla":"Modic, Kimberly A., et al. “Realization of a Three-Dimensional Spin–Anisotropic Harmonic Honeycomb Iridate.” <i>Nature Communications</i>, vol. 5, 4203, Springer Science and Business Media LLC, 2014, doi:<a href=\"https://doi.org/10.1038/ncomms5203\">10.1038/ncomms5203</a>.","short":"K.A. Modic, T.E. Smidt, I. Kimchi, N.P. Breznay, A. Biffin, S. Choi, R.D. Johnson, R. Coldea, P. Watkins-Curry, G.T. McCandless, J.Y. Chan, F. Gandara, Z. Islam, A. Vishwanath, A. Shekhter, R.D. McDonald, J.G. Analytis, Nature Communications 5 (2014).","ieee":"K. A. Modic <i>et al.</i>, “Realization of a three-dimensional spin–anisotropic harmonic honeycomb iridate,” <i>Nature Communications</i>, vol. 5. Springer Science and Business Media LLC, 2014.","chicago":"Modic, Kimberly A, Tess E. Smidt, Itamar Kimchi, Nicholas P. Breznay, Alun Biffin, Sungkyun Choi, Roger D. Johnson, et al. “Realization of a Three-Dimensional Spin–Anisotropic Harmonic Honeycomb Iridate.” <i>Nature Communications</i>. Springer Science and Business Media LLC, 2014. <a href=\"https://doi.org/10.1038/ncomms5203\">https://doi.org/10.1038/ncomms5203</a>.","ama":"Modic KA, Smidt TE, Kimchi I, et al. Realization of a three-dimensional spin–anisotropic harmonic honeycomb iridate. <i>Nature Communications</i>. 2014;5. doi:<a href=\"https://doi.org/10.1038/ncomms5203\">10.1038/ncomms5203</a>","apa":"Modic, K. A., Smidt, T. E., Kimchi, I., Breznay, N. P., Biffin, A., Choi, S., … Analytis, J. G. (2014). Realization of a three-dimensional spin–anisotropic harmonic honeycomb iridate. <i>Nature Communications</i>. Springer Science and Business Media LLC. <a href=\"https://doi.org/10.1038/ncomms5203\">https://doi.org/10.1038/ncomms5203</a>"},"year":"2014","date_updated":"2021-01-12T08:11:42Z"},{"extern":"1","volume":5,"external_id":{"pmid":["25264186"]},"citation":{"ieee":"T. Lebar <i>et al.</i>, “A bistable genetic switch based on designable DNA-binding domains,” <i>Nature Communications</i>, vol. 5, no. 1. Springer Nature, 2014.","chicago":"Lebar, Tina, Urban Bezeljak, Anja Golob, Miha Jerala, Lucija Kadunc, Boštjan Pirš, Martin Stražar, et al. “A Bistable Genetic Switch Based on Designable DNA-Binding Domains.” <i>Nature Communications</i>. Springer Nature, 2014. <a href=\"https://doi.org/10.1038/ncomms6007\">https://doi.org/10.1038/ncomms6007</a>.","ama":"Lebar T, Bezeljak U, Golob A, et al. A bistable genetic switch based on designable DNA-binding domains. <i>Nature Communications</i>. 2014;5(1). doi:<a href=\"https://doi.org/10.1038/ncomms6007\">10.1038/ncomms6007</a>","apa":"Lebar, T., Bezeljak, U., Golob, A., Jerala, M., Kadunc, L., Pirš, B., … Jerala, R. (2014). A bistable genetic switch based on designable DNA-binding domains. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/ncomms6007\">https://doi.org/10.1038/ncomms6007</a>","ista":"Lebar T, Bezeljak U, Golob A, Jerala M, Kadunc L, Pirš B, Stražar M, Vučko D, Zupančič U, Benčina M, Forstnerič V, Gaber R, Lonzarić J, Majerle A, Oblak A, Smole A, Jerala R. 2014. A bistable genetic switch based on designable DNA-binding domains. Nature Communications. 5(1), 5007.","mla":"Lebar, Tina, et al. “A Bistable Genetic Switch Based on Designable DNA-Binding Domains.” <i>Nature Communications</i>, vol. 5, no. 1, 5007, Springer Nature, 2014, doi:<a href=\"https://doi.org/10.1038/ncomms6007\">10.1038/ncomms6007</a>.","short":"T. Lebar, U. Bezeljak, A. Golob, M. Jerala, L. Kadunc, B. Pirš, M. Stražar, D. Vučko, U. Zupančič, M. Benčina, V. Forstnerič, R. Gaber, J. Lonzarić, A. Majerle, A. Oblak, A. Smole, R. Jerala, Nature Communications 5 (2014)."},"year":"2014","date_updated":"2021-01-12T08:13:15Z","abstract":[{"text":"Bistable switches are fundamental regulatory elements of complex systems, ranging from electronics to living cells. Designed genetic toggle switches have been constructed from pairs of natural transcriptional repressors wired to inhibit one another. The complexity of the engineered regulatory circuits can be increased using orthogonal transcriptional regulators based on designed DNA-binding domains. However, a mutual repressor-based toggle switch comprising DNA-binding domains of transcription-activator-like effectors (TALEs) did not support bistability in mammalian cells. Here, the challenge of engineering a bistable switch based on monomeric DNA-binding domains is solved via the introduction of a positive feedback loop composed of activators based on the same TALE domains as their opposing repressors and competition for the same DNA operator site. This design introduces nonlinearity and results in epigenetic bistability. This principle could be used to employ other monomeric DNA-binding domains such as CRISPR for applications ranging from reprogramming cells to building digital biological memory.","lang":"eng"}],"day":"29","doi":"10.1038/ncomms6007","quality_controlled":"1","article_type":"original","publisher":"Springer Nature","issue":"1","author":[{"last_name":"Lebar","first_name":"Tina","full_name":"Lebar, Tina"},{"orcid":"0000-0003-1365-5631","full_name":"Bezeljak, Urban","first_name":"Urban","last_name":"Bezeljak","id":"2A58201A-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Golob","first_name":"Anja","full_name":"Golob, Anja"},{"last_name":"Jerala","first_name":"Miha","full_name":"Jerala, Miha"},{"full_name":"Kadunc, Lucija","first_name":"Lucija","last_name":"Kadunc"},{"full_name":"Pirš, Boštjan","last_name":"Pirš","first_name":"Boštjan"},{"full_name":"Stražar, Martin","last_name":"Stražar","first_name":"Martin"},{"first_name":"Dušan","last_name":"Vučko","full_name":"Vučko, Dušan"},{"first_name":"Uroš","last_name":"Zupančič","full_name":"Zupančič, Uroš"},{"first_name":"Mojca","last_name":"Benčina","full_name":"Benčina, Mojca"},{"full_name":"Forstnerič, Vida","first_name":"Vida","last_name":"Forstnerič"},{"full_name":"Gaber, Rok","first_name":"Rok","last_name":"Gaber"},{"first_name":"Jan","last_name":"Lonzarić","full_name":"Lonzarić, Jan"},{"last_name":"Majerle","first_name":"Andreja","full_name":"Majerle, Andreja"},{"full_name":"Oblak, Alja","first_name":"Alja","last_name":"Oblak"},{"full_name":"Smole, Anže","last_name":"Smole","first_name":"Anže"},{"first_name":"Roman","last_name":"Jerala","full_name":"Jerala, Roman"}],"_id":"7361","pmid":1,"intvolume":"         5","title":"A bistable genetic switch based on designable DNA-binding domains","article_processing_charge":"No","date_created":"2020-01-25T15:57:17Z","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","type":"journal_article","date_published":"2014-09-29T00:00:00Z","publication_identifier":{"issn":["2041-1723"]},"language":[{"iso":"eng"}],"publication":"Nature Communications","article_number":"5007","month":"09","oa_version":"None"}]