---
_id: '7718'
abstract:
- lang: eng
  text: Flores Island, Indonesia, was inhabited by the small-bodied hominin species
    Homo floresiensis, which has an unknown evolutionary relationship to modern humans.
    This island is also home to an extant human pygmy population. Here we describe
    genome-scale single-nucleotide polymorphism data and whole-genome sequences from
    a contemporary human pygmy population living on Flores near the cave where H.
    floresiensis was found. The genomes of Flores pygmies reveal a complex history
    of admixture with Denisovans and Neanderthals but no evidence for gene flow with
    other archaic hominins. Modern individuals bear the signatures of recent positive
    selection encompassing the FADS (fatty acid desaturase) gene cluster, likely related
    to diet, and polygenic selection acting on standing variation that contributed
    to their short-stature phenotype. Thus, multiple independent instances of hominin
    insular dwarfism occurred on Flores.
article_processing_charge: No
article_type: original
author:
- first_name: Serena
  full_name: Tucci, Serena
  last_name: Tucci
- first_name: Samuel H.
  full_name: Vohr, Samuel H.
  last_name: Vohr
- first_name: Rajiv C.
  full_name: McCoy, Rajiv C.
  last_name: McCoy
- first_name: Benjamin
  full_name: Vernot, Benjamin
  last_name: Vernot
- first_name: Matthew Richard
  full_name: Robinson, Matthew Richard
  id: E5D42276-F5DA-11E9-8E24-6303E6697425
  last_name: Robinson
  orcid: 0000-0001-8982-8813
- first_name: Chiara
  full_name: Barbieri, Chiara
  last_name: Barbieri
- first_name: Brad J.
  full_name: Nelson, Brad J.
  last_name: Nelson
- first_name: Wenqing
  full_name: Fu, Wenqing
  last_name: Fu
- first_name: Gludhug A.
  full_name: Purnomo, Gludhug A.
  last_name: Purnomo
- first_name: Herawati
  full_name: Sudoyo, Herawati
  last_name: Sudoyo
- first_name: Evan E.
  full_name: Eichler, Evan E.
  last_name: Eichler
- first_name: Guido
  full_name: Barbujani, Guido
  last_name: Barbujani
- first_name: Peter M.
  full_name: Visscher, Peter M.
  last_name: Visscher
- first_name: Joshua M.
  full_name: Akey, Joshua M.
  last_name: Akey
- first_name: Richard E.
  full_name: Green, Richard E.
  last_name: Green
citation:
  ama: Tucci S, Vohr SH, McCoy RC, et al. Evolutionary history and adaptation of a
    human pygmy population of Flores Island, Indonesia. <i>Science</i>. 2018;361(6401):511-516.
    doi:<a href="https://doi.org/10.1126/science.aar8486">10.1126/science.aar8486</a>
  apa: Tucci, S., Vohr, S. H., McCoy, R. C., Vernot, B., Robinson, M. R., Barbieri,
    C., … Green, R. E. (2018). Evolutionary history and adaptation of a human pygmy
    population of Flores Island, Indonesia. <i>Science</i>. American Association for
    the Advancement of Science. <a href="https://doi.org/10.1126/science.aar8486">https://doi.org/10.1126/science.aar8486</a>
  chicago: Tucci, Serena, Samuel H. Vohr, Rajiv C. McCoy, Benjamin Vernot, Matthew
    Richard Robinson, Chiara Barbieri, Brad J. Nelson, et al. “Evolutionary History
    and Adaptation of a Human Pygmy Population of Flores Island, Indonesia.” <i>Science</i>.
    American Association for the Advancement of Science, 2018. <a href="https://doi.org/10.1126/science.aar8486">https://doi.org/10.1126/science.aar8486</a>.
  ieee: S. Tucci <i>et al.</i>, “Evolutionary history and adaptation of a human pygmy
    population of Flores Island, Indonesia,” <i>Science</i>, vol. 361, no. 6401. American
    Association for the Advancement of Science, pp. 511–516, 2018.
  ista: Tucci S, Vohr SH, McCoy RC, Vernot B, Robinson MR, Barbieri C, Nelson BJ,
    Fu W, Purnomo GA, Sudoyo H, Eichler EE, Barbujani G, Visscher PM, Akey JM, Green
    RE. 2018. Evolutionary history and adaptation of a human pygmy population of Flores
    Island, Indonesia. Science. 361(6401), 511–516.
  mla: Tucci, Serena, et al. “Evolutionary History and Adaptation of a Human Pygmy
    Population of Flores Island, Indonesia.” <i>Science</i>, vol. 361, no. 6401, American
    Association for the Advancement of Science, 2018, pp. 511–16, doi:<a href="https://doi.org/10.1126/science.aar8486">10.1126/science.aar8486</a>.
  short: S. Tucci, S.H. Vohr, R.C. McCoy, B. Vernot, M.R. Robinson, C. Barbieri, B.J.
    Nelson, W. Fu, G.A. Purnomo, H. Sudoyo, E.E. Eichler, G. Barbujani, P.M. Visscher,
    J.M. Akey, R.E. Green, Science 361 (2018) 511–516.
date_created: 2020-04-30T10:43:24Z
date_published: 2018-08-03T00:00:00Z
date_updated: 2021-01-12T08:15:04Z
day: '03'
doi: 10.1126/science.aar8486
extern: '1'
external_id:
  pmid:
  - '30072539'
intvolume: '       361'
issue: '6401'
language:
- iso: eng
month: '08'
oa_version: None
page: 511-516
pmid: 1
publication: Science
publication_identifier:
  issn:
  - 0036-8075
  - 1095-9203
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
status: public
title: Evolutionary history and adaptation of a human pygmy population of Flores Island,
  Indonesia
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 361
year: '2018'
...
---
_id: '5767'
abstract:
- lang: eng
  text: 'Cuprate superconductors have long been thought of as having strong electronic
    correlations but negligible spin-orbit coupling. Using spin- and angle-resolved
    photoemission spectroscopy, we discovered that one of the most studied cuprate
    superconductors, Bi2212, has a nontrivial spin texture with a spin-momentum locking
    that circles the Brillouin zone center and a spin-layer locking that allows states
    of opposite spin to be localized in different parts of the unit cell. Our findings
    pose challenges for the vast majority of models of cuprates, such as the Hubbard
    model and its variants, where spin-orbit interaction has been mostly neglected,
    and open the intriguing question of how the high-temperature superconducting state
    emerges in the presence of this nontrivial spin texture. '
acknowledgement: ' M.S. was supported by the Gordon and Betty Moore Foundation s EPiQS
  Initiative through grant GBMF4307'
article_processing_charge: No
article_type: original
author:
- first_name: Kenneth
  full_name: Gotlieb, Kenneth
  last_name: Gotlieb
- first_name: Chiu-Yun
  full_name: Lin, Chiu-Yun
  last_name: Lin
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Wentao
  full_name: Zhang, Wentao
  last_name: Zhang
- first_name: Christopher L.
  full_name: Smallwood, Christopher L.
  last_name: Smallwood
- first_name: Christopher
  full_name: Jozwiak, Christopher
  last_name: Jozwiak
- first_name: Hiroshi
  full_name: Eisaki, Hiroshi
  last_name: Eisaki
- first_name: Zahid
  full_name: Hussain, Zahid
  last_name: Hussain
- first_name: Ashvin
  full_name: Vishwanath, Ashvin
  last_name: Vishwanath
- first_name: Alessandra
  full_name: Lanzara, Alessandra
  last_name: Lanzara
citation:
  ama: Gotlieb K, Lin C-Y, Serbyn M, et al. Revealing hidden spin-momentum locking
    in a high-temperature cuprate superconductor. <i>Science</i>. 2018;362(6420):1271-1275.
    doi:<a href="https://doi.org/10.1126/science.aao0980">10.1126/science.aao0980</a>
  apa: Gotlieb, K., Lin, C.-Y., Serbyn, M., Zhang, W., Smallwood, C. L., Jozwiak,
    C., … Lanzara, A. (2018). Revealing hidden spin-momentum locking in a high-temperature
    cuprate superconductor. <i>Science</i>. American Association for the Advancement
    of Science. <a href="https://doi.org/10.1126/science.aao0980">https://doi.org/10.1126/science.aao0980</a>
  chicago: Gotlieb, Kenneth, Chiu-Yun Lin, Maksym Serbyn, Wentao Zhang, Christopher
    L. Smallwood, Christopher Jozwiak, Hiroshi Eisaki, Zahid Hussain, Ashvin Vishwanath,
    and Alessandra Lanzara. “Revealing Hidden Spin-Momentum Locking in a High-Temperature
    Cuprate Superconductor.” <i>Science</i>. American Association for the Advancement
    of Science, 2018. <a href="https://doi.org/10.1126/science.aao0980">https://doi.org/10.1126/science.aao0980</a>.
  ieee: K. Gotlieb <i>et al.</i>, “Revealing hidden spin-momentum locking in a high-temperature
    cuprate superconductor,” <i>Science</i>, vol. 362, no. 6420. American Association
    for the Advancement of Science, pp. 1271–1275, 2018.
  ista: Gotlieb K, Lin C-Y, Serbyn M, Zhang W, Smallwood CL, Jozwiak C, Eisaki H,
    Hussain Z, Vishwanath A, Lanzara A. 2018. Revealing hidden spin-momentum locking
    in a high-temperature cuprate superconductor. Science. 362(6420), 1271–1275.
  mla: Gotlieb, Kenneth, et al. “Revealing Hidden Spin-Momentum Locking in a High-Temperature
    Cuprate Superconductor.” <i>Science</i>, vol. 362, no. 6420, American Association
    for the Advancement of Science, 2018, pp. 1271–75, doi:<a href="https://doi.org/10.1126/science.aao0980">10.1126/science.aao0980</a>.
  short: K. Gotlieb, C.-Y. Lin, M. Serbyn, W. Zhang, C.L. Smallwood, C. Jozwiak, H.
    Eisaki, Z. Hussain, A. Vishwanath, A. Lanzara, Science 362 (2018) 1271–1275.
date_created: 2018-12-19T14:53:50Z
date_published: 2018-12-14T00:00:00Z
date_updated: 2023-09-18T08:11:56Z
day: '14'
department:
- _id: MaSe
doi: 10.1126/science.aao0980
external_id:
  isi:
  - '000452994400048'
intvolume: '       362'
isi: 1
issue: '6420'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1126/science.aao0980
month: '12'
oa: 1
oa_version: Published Version
page: 1271-1275
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Revealing hidden spin-momentum locking in a high-temperature cuprate superconductor
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 362
year: '2018'
...
---
_id: '13381'
abstract:
- lang: eng
  text: Self-assembly of inorganic nanoparticles has been used to prepare hundreds
    of different colloidal crystals, but almost invariably with the restriction that
    the particles must be densely packed. Here, we show that non–close-packed nanoparticle
    arrays can be fabricated through the selective removal of one of two components
    comprising binary nanoparticle superlattices. First, a variety of binary nanoparticle
    superlattices were prepared at the liquid-air interface, including several arrangements
    that were previously unknown. Molecular dynamics simulations revealed the particular
    role of the liquid in templating the formation of superlattices not achievable
    through self-assembly in bulk solution. Second, upon stabilization, all of these
    binary superlattices could be transformed into distinct “nanoallotropes”—nanoporous
    materials having the same chemical composition but differing in their nanoscale
    architectures.
article_processing_charge: No
article_type: original
author:
- first_name: Thumu
  full_name: Udayabhaskararao, Thumu
  last_name: Udayabhaskararao
- first_name: Thomas
  full_name: Altantzis, Thomas
  last_name: Altantzis
- first_name: Lothar
  full_name: Houben, Lothar
  last_name: Houben
- first_name: Marc
  full_name: Coronado-Puchau, Marc
  last_name: Coronado-Puchau
- first_name: Judith
  full_name: Langer, Judith
  last_name: Langer
- first_name: Ronit
  full_name: Popovitz-Biro, Ronit
  last_name: Popovitz-Biro
- first_name: Luis M.
  full_name: Liz-Marzán, Luis M.
  last_name: Liz-Marzán
- first_name: Lela
  full_name: Vuković, Lela
  last_name: Vuković
- first_name: Petr
  full_name: Král, Petr
  last_name: Král
- first_name: Sara
  full_name: Bals, Sara
  last_name: Bals
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
citation:
  ama: Udayabhaskararao T, Altantzis T, Houben L, et al. Tunable porous nanoallotropes
    prepared by post-assembly etching of binary nanoparticle superlattices. <i>Science</i>.
    2017;358(6362):514-518. doi:<a href="https://doi.org/10.1126/science.aan6046">10.1126/science.aan6046</a>
  apa: Udayabhaskararao, T., Altantzis, T., Houben, L., Coronado-Puchau, M., Langer,
    J., Popovitz-Biro, R., … Klajn, R. (2017). Tunable porous nanoallotropes prepared
    by post-assembly etching of binary nanoparticle superlattices. <i>Science</i>.
    American Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.aan6046">https://doi.org/10.1126/science.aan6046</a>
  chicago: Udayabhaskararao, Thumu, Thomas Altantzis, Lothar Houben, Marc Coronado-Puchau,
    Judith Langer, Ronit Popovitz-Biro, Luis M. Liz-Marzán, et al. “Tunable Porous
    Nanoallotropes Prepared by Post-Assembly Etching of Binary Nanoparticle Superlattices.”
    <i>Science</i>. American Association for the Advancement of Science, 2017. <a
    href="https://doi.org/10.1126/science.aan6046">https://doi.org/10.1126/science.aan6046</a>.
  ieee: T. Udayabhaskararao <i>et al.</i>, “Tunable porous nanoallotropes prepared
    by post-assembly etching of binary nanoparticle superlattices,” <i>Science</i>,
    vol. 358, no. 6362. American Association for the Advancement of Science, pp. 514–518,
    2017.
  ista: Udayabhaskararao T, Altantzis T, Houben L, Coronado-Puchau M, Langer J, Popovitz-Biro
    R, Liz-Marzán LM, Vuković L, Král P, Bals S, Klajn R. 2017. Tunable porous nanoallotropes
    prepared by post-assembly etching of binary nanoparticle superlattices. Science.
    358(6362), 514–518.
  mla: Udayabhaskararao, Thumu, et al. “Tunable Porous Nanoallotropes Prepared by
    Post-Assembly Etching of Binary Nanoparticle Superlattices.” <i>Science</i>, vol.
    358, no. 6362, American Association for the Advancement of Science, 2017, pp.
    514–18, doi:<a href="https://doi.org/10.1126/science.aan6046">10.1126/science.aan6046</a>.
  short: T. Udayabhaskararao, T. Altantzis, L. Houben, M. Coronado-Puchau, J. Langer,
    R. Popovitz-Biro, L.M. Liz-Marzán, L. Vuković, P. Král, S. Bals, R. Klajn, Science
    358 (2017) 514–518.
date_created: 2023-08-01T09:41:16Z
date_published: 2017-10-27T00:00:00Z
date_updated: 2023-08-07T11:25:00Z
day: '27'
doi: 10.1126/science.aan6046
extern: '1'
external_id:
  pmid:
  - '29074773'
intvolume: '       358'
issue: '6362'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://repository.uantwerpen.be/docman/irua/8d722e/147242_2018_06_07.pdf
month: '10'
oa: 1
oa_version: Submitted Version
page: 514-518
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tunable porous nanoallotropes prepared by post-assembly etching of binary nanoparticle
  superlattices
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 358
year: '2017'
...
---
_id: '13384'
abstract:
- lang: eng
  text: Although methane is a volatile gas, it can be efficiently trapped in ice,
    which can then be readily set on fire. Beyond the curiosity of this “burning ice,”
    caged methane is of great importance as one of the world's largest natural gas
    resources. In these materials, known as clathrates, methane molecules are tightly
    bound in nanometer-sized, regularly interspaced cages. Other inorganic materials,
    such as the silica mineral chibaite, can similarly encapsulate methane and higher
    hydrocarbons. Simple organic compounds have also been found to trap various organic
    molecules upon crystallization.
article_processing_charge: No
article_type: original
author:
- first_name: Dipak
  full_name: Samanta, Dipak
  last_name: Samanta
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
citation:
  ama: Samanta D, Klajn R. Clathrates grow up. <i>Science</i>. 2017;355(6328):912-912.
    doi:<a href="https://doi.org/10.1126/science.aam7927">10.1126/science.aam7927</a>
  apa: Samanta, D., &#38; Klajn, R. (2017). Clathrates grow up. <i>Science</i>. American
    Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.aam7927">https://doi.org/10.1126/science.aam7927</a>
  chicago: Samanta, Dipak, and Rafal Klajn. “Clathrates Grow Up.” <i>Science</i>.
    American Association for the Advancement of Science, 2017. <a href="https://doi.org/10.1126/science.aam7927">https://doi.org/10.1126/science.aam7927</a>.
  ieee: D. Samanta and R. Klajn, “Clathrates grow up,” <i>Science</i>, vol. 355, no.
    6328. American Association for the Advancement of Science, pp. 912–912, 2017.
  ista: Samanta D, Klajn R. 2017. Clathrates grow up. Science. 355(6328), 912–912.
  mla: Samanta, Dipak, and Rafal Klajn. “Clathrates Grow Up.” <i>Science</i>, vol.
    355, no. 6328, American Association for the Advancement of Science, 2017, pp.
    912–912, doi:<a href="https://doi.org/10.1126/science.aam7927">10.1126/science.aam7927</a>.
  short: D. Samanta, R. Klajn, Science 355 (2017) 912–912.
date_created: 2023-08-01T09:41:55Z
date_published: 2017-03-03T00:00:00Z
date_updated: 2023-08-07T12:23:03Z
day: '03'
doi: 10.1126/science.aam7927
extern: '1'
external_id:
  pmid:
  - '28254902'
intvolume: '       355'
issue: '6328'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '03'
oa_version: None
page: 912-912
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Clathrates grow up
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 355
year: '2017'
...
---
_id: '14008'
abstract:
- lang: eng
  text: Time-resolved x-ray absorption spectroscopy (TR-XAS) has so far practically
    been limited to large-scale facilities, to subpicosecond temporal resolution,
    and to the condensed phase. We report the realization of TR-XAS with a temporal
    resolution in the low femtosecond range by developing a tabletop high-harmonic
    source reaching up to 350 electron volts, thus partially covering the spectral
    region of 280 to 530 electron volts, where water is transmissive. We used this
    source to follow previously unexamined light-induced chemical reactions in the
    lowest electronic states of isolated CF4+ and SF6+ molecules in the gas phase.
    By probing element-specific core-to-valence transitions at the carbon K-edge or
    the sulfur L-edges, we characterized their reaction paths and observed the effect
    of symmetry breaking through the splitting of absorption bands and Rydberg-valence
    mixing induced by the geometry changes.
article_processing_charge: No
article_type: original
author:
- first_name: Yoann
  full_name: Pertot, Yoann
  last_name: Pertot
- first_name: Cédric
  full_name: Schmidt, Cédric
  last_name: Schmidt
- first_name: Mary
  full_name: Matthews, Mary
  last_name: Matthews
- first_name: Adrien
  full_name: Chauvet, Adrien
  last_name: Chauvet
- first_name: Martin
  full_name: Huppert, Martin
  last_name: Huppert
- first_name: Vit
  full_name: Svoboda, Vit
  last_name: Svoboda
- first_name: Aaron
  full_name: von Conta, Aaron
  last_name: von Conta
- first_name: Andres
  full_name: Tehlar, Andres
  last_name: Tehlar
- first_name: Denitsa Rangelova
  full_name: Baykusheva, Denitsa Rangelova
  id: 71b4d059-2a03-11ee-914d-dfa3beed6530
  last_name: Baykusheva
- first_name: Jean-Pierre
  full_name: Wolf, Jean-Pierre
  last_name: Wolf
- first_name: Hans Jakob
  full_name: Wörner, Hans Jakob
  last_name: Wörner
citation:
  ama: Pertot Y, Schmidt C, Matthews M, et al. Time-resolved x-ray absorption spectroscopy
    with a water window high-harmonic source. <i>Science</i>. 2017;355(6322):264-267.
    doi:<a href="https://doi.org/10.1126/science.aah6114">10.1126/science.aah6114</a>
  apa: Pertot, Y., Schmidt, C., Matthews, M., Chauvet, A., Huppert, M., Svoboda, V.,
    … Wörner, H. J. (2017). Time-resolved x-ray absorption spectroscopy with a water
    window high-harmonic source. <i>Science</i>. American Association for the Advancement
    of Science. <a href="https://doi.org/10.1126/science.aah6114">https://doi.org/10.1126/science.aah6114</a>
  chicago: Pertot, Yoann, Cédric Schmidt, Mary Matthews, Adrien Chauvet, Martin Huppert,
    Vit Svoboda, Aaron von Conta, et al. “Time-Resolved x-Ray Absorption Spectroscopy
    with a Water Window High-Harmonic Source.” <i>Science</i>. American Association
    for the Advancement of Science, 2017. <a href="https://doi.org/10.1126/science.aah6114">https://doi.org/10.1126/science.aah6114</a>.
  ieee: Y. Pertot <i>et al.</i>, “Time-resolved x-ray absorption spectroscopy with
    a water window high-harmonic source,” <i>Science</i>, vol. 355, no. 6322. American
    Association for the Advancement of Science, pp. 264–267, 2017.
  ista: Pertot Y, Schmidt C, Matthews M, Chauvet A, Huppert M, Svoboda V, von Conta
    A, Tehlar A, Baykusheva DR, Wolf J-P, Wörner HJ. 2017. Time-resolved x-ray absorption
    spectroscopy with a water window high-harmonic source. Science. 355(6322), 264–267.
  mla: Pertot, Yoann, et al. “Time-Resolved x-Ray Absorption Spectroscopy with a Water
    Window High-Harmonic Source.” <i>Science</i>, vol. 355, no. 6322, American Association
    for the Advancement of Science, 2017, pp. 264–67, doi:<a href="https://doi.org/10.1126/science.aah6114">10.1126/science.aah6114</a>.
  short: Y. Pertot, C. Schmidt, M. Matthews, A. Chauvet, M. Huppert, V. Svoboda, A.
    von Conta, A. Tehlar, D.R. Baykusheva, J.-P. Wolf, H.J. Wörner, Science 355 (2017)
    264–267.
date_created: 2023-08-10T06:36:39Z
date_published: 2017-01-05T00:00:00Z
date_updated: 2023-08-22T08:34:38Z
day: '05'
doi: 10.1126/science.aah6114
extern: '1'
external_id:
  pmid:
  - '28059713'
intvolume: '       355'
issue: '6322'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '01'
oa_version: None
page: 264-267
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Time-resolved x-ray absorption spectroscopy with a water window high-harmonic
  source
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 355
year: '2017'
...
---
_id: '14287'
abstract:
- lang: eng
  text: We describe an approach to bottom-up fabrication that allows integration of
    the functional diversity of proteins into designed three-dimensional structural
    frameworks. A set of custom staple proteins based on transcription activator–like
    effector proteins folds a double-stranded DNA template into a user-defined shape.
    Each staple protein is designed to recognize and closely link two distinct double-helical
    DNA sequences at separate positions on the template. We present design rules for
    constructing megadalton-scale DNA-protein hybrid shapes; introduce various structural
    motifs, such as custom curvature, corners, and vertices; and describe principles
    for creating multilayer DNA-protein objects with enhanced rigidity. We demonstrate
    self-assembly of our hybrid nanostructures in one-pot mixtures that include the
    genetic information for the designed proteins, the template DNA, RNA polymerase,
    ribosomes, and cofactors for transcription and translation.
article_number: eaam5488
article_processing_charge: No
article_type: original
author:
- first_name: Florian M
  full_name: Praetorius, Florian M
  id: dfec9381-4341-11ee-8fd8-faa02bba7d62
  last_name: Praetorius
- first_name: Hendrik
  full_name: Dietz, Hendrik
  last_name: Dietz
citation:
  ama: Praetorius FM, Dietz H. Self-assembly of genetically encoded DNA-protein hybrid
    nanoscale shapes. <i>Science</i>. 2017;355(6331). doi:<a href="https://doi.org/10.1126/science.aam5488">10.1126/science.aam5488</a>
  apa: Praetorius, F. M., &#38; Dietz, H. (2017). Self-assembly of genetically encoded
    DNA-protein hybrid nanoscale shapes. <i>Science</i>. American Association for
    the Advancement of Science. <a href="https://doi.org/10.1126/science.aam5488">https://doi.org/10.1126/science.aam5488</a>
  chicago: Praetorius, Florian M, and Hendrik Dietz. “Self-Assembly of Genetically
    Encoded DNA-Protein Hybrid Nanoscale Shapes.” <i>Science</i>. American Association
    for the Advancement of Science, 2017. <a href="https://doi.org/10.1126/science.aam5488">https://doi.org/10.1126/science.aam5488</a>.
  ieee: F. M. Praetorius and H. Dietz, “Self-assembly of genetically encoded DNA-protein
    hybrid nanoscale shapes,” <i>Science</i>, vol. 355, no. 6331. American Association
    for the Advancement of Science, 2017.
  ista: Praetorius FM, Dietz H. 2017. Self-assembly of genetically encoded DNA-protein
    hybrid nanoscale shapes. Science. 355(6331), eaam5488.
  mla: Praetorius, Florian M., and Hendrik Dietz. “Self-Assembly of Genetically Encoded
    DNA-Protein Hybrid Nanoscale Shapes.” <i>Science</i>, vol. 355, no. 6331, eaam5488,
    American Association for the Advancement of Science, 2017, doi:<a href="https://doi.org/10.1126/science.aam5488">10.1126/science.aam5488</a>.
  short: F.M. Praetorius, H. Dietz, Science 355 (2017).
date_created: 2023-09-06T12:08:55Z
date_published: 2017-03-24T00:00:00Z
date_updated: 2023-11-07T12:33:05Z
day: '24'
doi: 10.1126/science.aam5488
extern: '1'
external_id:
  pmid:
  - '28336611'
intvolume: '       355'
issue: '6331'
language:
- iso: eng
month: '03'
oa_version: None
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Self-assembly of genetically encoded DNA-protein hybrid nanoscale shapes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 355
year: '2017'
...
---
_id: '14013'
abstract:
- lang: eng
  text: The ultrafast motion of electrons and holes after light-matter interaction
    is fundamental to a broad range of chemical and biophysical processes. We advanced
    high-harmonic spectroscopy to resolve spatially and temporally the migration of
    an electron hole immediately after ionization of iodoacetylene while simultaneously
    demonstrating extensive control over the process. A multidimensional approach,
    based on the measurement and accurate theoretical description of both even and
    odd harmonic orders, enabled us to reconstruct both quantum amplitudes and phases
    of the electronic states with a resolution of ~100 attoseconds. We separately
    reconstructed quasi-field-free and laser-controlled charge migration as a function
    of the spatial orientation of the molecule and determined the shape of the hole
    created by ionization. Our technique opens the prospect of laser control over
    electronic primary processes.
article_processing_charge: No
article_type: original
author:
- first_name: P. M.
  full_name: Kraus, P. M.
  last_name: Kraus
- first_name: B.
  full_name: Mignolet, B.
  last_name: Mignolet
- first_name: Denitsa Rangelova
  full_name: Baykusheva, Denitsa Rangelova
  id: 71b4d059-2a03-11ee-914d-dfa3beed6530
  last_name: Baykusheva
- first_name: A.
  full_name: Rupenyan, A.
  last_name: Rupenyan
- first_name: L.
  full_name: Horný, L.
  last_name: Horný
- first_name: E. F.
  full_name: Penka, E. F.
  last_name: Penka
- first_name: G.
  full_name: Grassi, G.
  last_name: Grassi
- first_name: O. I.
  full_name: Tolstikhin, O. I.
  last_name: Tolstikhin
- first_name: J.
  full_name: Schneider, J.
  last_name: Schneider
- first_name: F.
  full_name: Jensen, F.
  last_name: Jensen
- first_name: L. B.
  full_name: Madsen, L. B.
  last_name: Madsen
- first_name: A. D.
  full_name: Bandrauk, A. D.
  last_name: Bandrauk
- first_name: F.
  full_name: Remacle, F.
  last_name: Remacle
- first_name: H. J.
  full_name: Wörner, H. J.
  last_name: Wörner
citation:
  ama: Kraus PM, Mignolet B, Baykusheva DR, et al. Measurement and laser control of
    attosecond charge migration in ionized iodoacetylene. <i>Science</i>. 2015;350(6262):790-795.
    doi:<a href="https://doi.org/10.1126/science.aab2160">10.1126/science.aab2160</a>
  apa: Kraus, P. M., Mignolet, B., Baykusheva, D. R., Rupenyan, A., Horný, L., Penka,
    E. F., … Wörner, H. J. (2015). Measurement and laser control of attosecond charge
    migration in ionized iodoacetylene. <i>Science</i>. American Association for the
    Advancement of Science. <a href="https://doi.org/10.1126/science.aab2160">https://doi.org/10.1126/science.aab2160</a>
  chicago: Kraus, P. M., B. Mignolet, Denitsa Rangelova Baykusheva, A. Rupenyan, L.
    Horný, E. F. Penka, G. Grassi, et al. “Measurement and Laser Control of Attosecond
    Charge Migration in Ionized Iodoacetylene.” <i>Science</i>. American Association
    for the Advancement of Science, 2015. <a href="https://doi.org/10.1126/science.aab2160">https://doi.org/10.1126/science.aab2160</a>.
  ieee: P. M. Kraus <i>et al.</i>, “Measurement and laser control of attosecond charge
    migration in ionized iodoacetylene,” <i>Science</i>, vol. 350, no. 6262. American
    Association for the Advancement of Science, pp. 790–795, 2015.
  ista: Kraus PM, Mignolet B, Baykusheva DR, Rupenyan A, Horný L, Penka EF, Grassi
    G, Tolstikhin OI, Schneider J, Jensen F, Madsen LB, Bandrauk AD, Remacle F, Wörner
    HJ. 2015. Measurement and laser control of attosecond charge migration in ionized
    iodoacetylene. Science. 350(6262), 790–795.
  mla: Kraus, P. M., et al. “Measurement and Laser Control of Attosecond Charge Migration
    in Ionized Iodoacetylene.” <i>Science</i>, vol. 350, no. 6262, American Association
    for the Advancement of Science, 2015, pp. 790–95, doi:<a href="https://doi.org/10.1126/science.aab2160">10.1126/science.aab2160</a>.
  short: P.M. Kraus, B. Mignolet, D.R. Baykusheva, A. Rupenyan, L. Horný, E.F. Penka,
    G. Grassi, O.I. Tolstikhin, J. Schneider, F. Jensen, L.B. Madsen, A.D. Bandrauk,
    F. Remacle, H.J. Wörner, Science 350 (2015) 790–795.
date_created: 2023-08-10T06:37:35Z
date_published: 2015-10-22T00:00:00Z
date_updated: 2023-08-22T08:47:39Z
day: '22'
doi: 10.1126/science.aab2160
extern: '1'
external_id:
  pmid:
  - '26494175'
intvolume: '       350'
issue: '6262'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '10'
oa_version: None
page: 790-795
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Measurement and laser control of attosecond charge migration in ionized iodoacetylene
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 350
year: '2015'
...
---
_id: '13400'
abstract:
- lang: eng
  text: Organizing inorganic nanocrystals into complex architectures is challenging
    and typically relies on preexisting templates, such as properly folded DNA or
    polypeptide chains. We found that under carefully controlled conditions, cubic
    nanocrystals of magnetite self-assemble into arrays of helical superstructures
    in a template-free manner with >99% yield. Computer simulations revealed that
    the formation of helices is determined by the interplay of van der Waals and magnetic
    dipole-dipole interactions, Zeeman coupling, and entropic forces and can be attributed
    to spontaneous formation of chiral nanocube clusters. Neighboring helices within
    their densely packed ensembles tended to adopt the same handedness in order to
    maximize packing, thus revealing a novel mechanism of symmetry breaking and chirality
    amplification.
article_processing_charge: No
article_type: original
author:
- first_name: Gurvinder
  full_name: Singh, Gurvinder
  last_name: Singh
- first_name: Henry
  full_name: Chan, Henry
  last_name: Chan
- first_name: Artem
  full_name: Baskin, Artem
  last_name: Baskin
- first_name: Elijah
  full_name: Gelman, Elijah
  last_name: Gelman
- first_name: Nikita
  full_name: Repnin, Nikita
  last_name: Repnin
- first_name: Petr
  full_name: Král, Petr
  last_name: Král
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
citation:
  ama: Singh G, Chan H, Baskin A, et al. Self-assembly of magnetite nanocubes into
    helical superstructures. <i>Science</i>. 2014;345(6201):1149-1153. doi:<a href="https://doi.org/10.1126/science.1254132">10.1126/science.1254132</a>
  apa: Singh, G., Chan, H., Baskin, A., Gelman, E., Repnin, N., Král, P., &#38; Klajn,
    R. (2014). Self-assembly of magnetite nanocubes into helical superstructures.
    <i>Science</i>. American Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1254132">https://doi.org/10.1126/science.1254132</a>
  chicago: Singh, Gurvinder, Henry Chan, Artem Baskin, Elijah Gelman, Nikita Repnin,
    Petr Král, and Rafal Klajn. “Self-Assembly of Magnetite Nanocubes into Helical
    Superstructures.” <i>Science</i>. American Association for the Advancement of
    Science, 2014. <a href="https://doi.org/10.1126/science.1254132">https://doi.org/10.1126/science.1254132</a>.
  ieee: G. Singh <i>et al.</i>, “Self-assembly of magnetite nanocubes into helical
    superstructures,” <i>Science</i>, vol. 345, no. 6201. American Association for
    the Advancement of Science, pp. 1149–1153, 2014.
  ista: Singh G, Chan H, Baskin A, Gelman E, Repnin N, Král P, Klajn R. 2014. Self-assembly
    of magnetite nanocubes into helical superstructures. Science. 345(6201), 1149–1153.
  mla: Singh, Gurvinder, et al. “Self-Assembly of Magnetite Nanocubes into Helical
    Superstructures.” <i>Science</i>, vol. 345, no. 6201, American Association for
    the Advancement of Science, 2014, pp. 1149–53, doi:<a href="https://doi.org/10.1126/science.1254132">10.1126/science.1254132</a>.
  short: G. Singh, H. Chan, A. Baskin, E. Gelman, N. Repnin, P. Král, R. Klajn, Science
    345 (2014) 1149–1153.
date_created: 2023-08-01T09:45:56Z
date_published: 2014-07-24T00:00:00Z
date_updated: 2023-08-08T07:23:05Z
day: '24'
doi: 10.1126/science.1254132
extern: '1'
external_id:
  pmid:
  - '25061133'
intvolume: '       345'
issue: '6201'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '07'
oa_version: None
page: 1149-1153
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Self-assembly of magnetite nanocubes into helical superstructures
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 345
year: '2014'
...
---
_id: '9055'
abstract:
- lang: eng
  text: Spontaneous formation of colonies of bacteria or flocks of birds are examples
    of self-organization in active living matter. Here, we demonstrate a form of self-organization
    from nonequilibrium driving forces in a suspension of synthetic photoactivated
    colloidal particles. They lead to two-dimensional "living crystals," which form,
    break, explode, and re-form elsewhere. The dynamic assembly results from a competition
    between self-propulsion of particles and an attractive interaction induced respectively
    by osmotic and phoretic effects and activated by light. We measured a transition
    from normal to giant-number fluctuations. Our experiments are quantitatively described
    by simple numerical simulations. We show that the existence of the living crystals
    is intrinsically related to the out-of-equilibrium collisions of the self-propelled
    particles.
article_processing_charge: No
article_type: original
author:
- first_name: Jérémie A
  full_name: Palacci, Jérémie A
  id: 8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d
  last_name: Palacci
  orcid: 0000-0002-7253-9465
- first_name: S.
  full_name: Sacanna, S.
  last_name: Sacanna
- first_name: A. P.
  full_name: Steinberg, A. P.
  last_name: Steinberg
- first_name: D. J.
  full_name: Pine, D. J.
  last_name: Pine
- first_name: P. M.
  full_name: Chaikin, P. M.
  last_name: Chaikin
citation:
  ama: Palacci JA, Sacanna S, Steinberg AP, Pine DJ, Chaikin PM. Living crystals of
    light-activated colloidal surfers. <i>Science</i>. 2013;339(6122):936-940. doi:<a
    href="https://doi.org/10.1126/science.1230020">10.1126/science.1230020</a>
  apa: Palacci, J. A., Sacanna, S., Steinberg, A. P., Pine, D. J., &#38; Chaikin,
    P. M. (2013). Living crystals of light-activated colloidal surfers. <i>Science</i>.
    American Association for the Advancement of Science . <a href="https://doi.org/10.1126/science.1230020">https://doi.org/10.1126/science.1230020</a>
  chicago: Palacci, Jérémie A, S. Sacanna, A. P. Steinberg, D. J. Pine, and P. M.
    Chaikin. “Living Crystals of Light-Activated Colloidal Surfers.” <i>Science</i>.
    American Association for the Advancement of Science , 2013. <a href="https://doi.org/10.1126/science.1230020">https://doi.org/10.1126/science.1230020</a>.
  ieee: J. A. Palacci, S. Sacanna, A. P. Steinberg, D. J. Pine, and P. M. Chaikin,
    “Living crystals of light-activated colloidal surfers,” <i>Science</i>, vol. 339,
    no. 6122. American Association for the Advancement of Science , pp. 936–940, 2013.
  ista: Palacci JA, Sacanna S, Steinberg AP, Pine DJ, Chaikin PM. 2013. Living crystals
    of light-activated colloidal surfers. Science. 339(6122), 936–940.
  mla: Palacci, Jérémie A., et al. “Living Crystals of Light-Activated Colloidal Surfers.”
    <i>Science</i>, vol. 339, no. 6122, American Association for the Advancement of
    Science , 2013, pp. 936–40, doi:<a href="https://doi.org/10.1126/science.1230020">10.1126/science.1230020</a>.
  short: J.A. Palacci, S. Sacanna, A.P. Steinberg, D.J. Pine, P.M. Chaikin, Science
    339 (2013) 936–940.
date_created: 2021-02-01T14:37:29Z
date_published: 2013-02-22T00:00:00Z
date_updated: 2022-08-25T14:57:43Z
day: '22'
doi: 10.1126/science.1230020
extern: '1'
external_id:
  pmid:
  - '23371555'
intvolume: '       339'
issue: '6122'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '02'
oa_version: None
page: 936-940
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: 'American Association for the Advancement of Science '
quality_controlled: '1'
scopus_import: '1'
status: public
title: Living crystals of light-activated colloidal surfers
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 339
year: '2013'
...
---
_id: '12198'
abstract:
- lang: eng
  text: The Arabidopsis thaliana central cell, the companion cell of the egg, undergoes
    DNA demethylation before fertilization, but the targeting preferences, mechanism,
    and biological significance of this process remain unclear. Here, we show that
    active DNA demethylation mediated by the DEMETER DNA glycosylase accounts for
    all of the demethylation in the central cell and preferentially targets small,
    AT-rich, and nucleosome-depleted euchromatic transposable elements. The vegetative
    cell, the companion cell of sperm, also undergoes DEMETER-dependent demethylation
    of similar sequences, and lack of DEMETER in vegetative cells causes reduced small
    RNA–directed DNA methylation of transposons in sperm. Our results demonstrate
    that demethylation in companion cells reinforces transposon methylation in plant
    gametes and likely contributes to stable silencing of transposable elements across
    generations.
acknowledgement: We thank S. Harmer for assistance with the analysis of histone modifications,
  the BioOptics team at the Vienna Biocenter Campus for sorting sperm and vegetative
  cell nuclei, K. Slotkin for the LAT52p-amiRNA=GFP plasmid, and G. Drews for the
  DD45p-GFP transgenic line. This work was partially funded by an NIH grant (GM69415)
  to R.L.F., NSF grants (MCB-0918821 and IOS-1025890) to R.L.F. and D.Z., a Young
  Investigator Grant from the Arnold and Mabel Beckman Foundation to D.Z., an Austrian
  Science Fund (FWF) grant P21389-B03 to H.T., a Ruth L. Kirschstein NIH Predoctoral
  Fellowship (GM093633) to C.A.I., a Fulbright Scholarship to J.A.R., a fellowship
  from the Jane Coffin Childs Memorial Fund to A.Z., and a Robert and Colleen Haas
  Scholarship to D.R. Sequencing data are deposited in GEO (GSE38935).
article_processing_charge: No
article_type: original
author:
- first_name: Christian A.
  full_name: Ibarra, Christian A.
  last_name: Ibarra
- first_name: Xiaoqi
  full_name: Feng, Xiaoqi
  id: e0164712-22ee-11ed-b12a-d80fcdf35958
  last_name: Feng
  orcid: 0000-0002-4008-1234
- first_name: Vera K.
  full_name: Schoft, Vera K.
  last_name: Schoft
- first_name: Tzung-Fu
  full_name: Hsieh, Tzung-Fu
  last_name: Hsieh
- first_name: Rie
  full_name: Uzawa, Rie
  last_name: Uzawa
- first_name: Jessica A.
  full_name: Rodrigues, Jessica A.
  last_name: Rodrigues
- first_name: Assaf
  full_name: Zemach, Assaf
  last_name: Zemach
- first_name: Nina
  full_name: Chumak, Nina
  last_name: Chumak
- first_name: Adriana
  full_name: Machlicova, Adriana
  last_name: Machlicova
- first_name: Toshiro
  full_name: Nishimura, Toshiro
  last_name: Nishimura
- first_name: Denisse
  full_name: Rojas, Denisse
  last_name: Rojas
- first_name: Robert L.
  full_name: Fischer, Robert L.
  last_name: Fischer
- first_name: Hisashi
  full_name: Tamaru, Hisashi
  last_name: Tamaru
- first_name: Daniel
  full_name: Zilberman, Daniel
  last_name: Zilberman
citation:
  ama: Ibarra CA, Feng X, Schoft VK, et al. Active DNA demethylation in plant companion
    cells reinforces transposon methylation in gametes. <i>Science</i>. 2012;337(6100):1360-1364.
    doi:<a href="https://doi.org/10.1126/science.1224839">10.1126/science.1224839</a>
  apa: Ibarra, C. A., Feng, X., Schoft, V. K., Hsieh, T.-F., Uzawa, R., Rodrigues,
    J. A., … Zilberman, D. (2012). Active DNA demethylation in plant companion cells
    reinforces transposon methylation in gametes. <i>Science</i>. American Association
    for the Advancement of Science. <a href="https://doi.org/10.1126/science.1224839">https://doi.org/10.1126/science.1224839</a>
  chicago: Ibarra, Christian A., Xiaoqi Feng, Vera K. Schoft, Tzung-Fu Hsieh, Rie
    Uzawa, Jessica A. Rodrigues, Assaf Zemach, et al. “Active DNA Demethylation in
    Plant Companion Cells Reinforces Transposon Methylation in Gametes.” <i>Science</i>.
    American Association for the Advancement of Science, 2012. <a href="https://doi.org/10.1126/science.1224839">https://doi.org/10.1126/science.1224839</a>.
  ieee: C. A. Ibarra <i>et al.</i>, “Active DNA demethylation in plant companion cells
    reinforces transposon methylation in gametes,” <i>Science</i>, vol. 337, no. 6100.
    American Association for the Advancement of Science, pp. 1360–1364, 2012.
  ista: Ibarra CA, Feng X, Schoft VK, Hsieh T-F, Uzawa R, Rodrigues JA, Zemach A,
    Chumak N, Machlicova A, Nishimura T, Rojas D, Fischer RL, Tamaru H, Zilberman
    D. 2012. Active DNA demethylation in plant companion cells reinforces transposon
    methylation in gametes. Science. 337(6100), 1360–1364.
  mla: Ibarra, Christian A., et al. “Active DNA Demethylation in Plant Companion Cells
    Reinforces Transposon Methylation in Gametes.” <i>Science</i>, vol. 337, no. 6100,
    American Association for the Advancement of Science, 2012, pp. 1360–64, doi:<a
    href="https://doi.org/10.1126/science.1224839">10.1126/science.1224839</a>.
  short: C.A. Ibarra, X. Feng, V.K. Schoft, T.-F. Hsieh, R. Uzawa, J.A. Rodrigues,
    A. Zemach, N. Chumak, A. Machlicova, T. Nishimura, D. Rojas, R.L. Fischer, H.
    Tamaru, D. Zilberman, Science 337 (2012) 1360–1364.
date_created: 2023-01-16T09:21:24Z
date_published: 2012-09-14T00:00:00Z
date_updated: 2023-10-16T09:27:26Z
day: '14'
department:
- _id: XiFe
doi: 10.1126/science.1224839
external_id:
  pmid:
  - '22984074'
intvolume: '       337'
issue: '6100'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4034762/
month: '09'
oa: 1
oa_version: Published Version
page: 1360-1364
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Active DNA demethylation in plant companion cells reinforces transposon methylation
  in gametes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 337
year: '2012'
...
---
_id: '7310'
abstract:
- lang: eng
  text: The rechargeable nonaqueous lithium-air (Li-O2) battery is receiving a great
    deal of interest because, theoretically, its specific energy far exceeds the best
    that can be achieved with lithium-ion cells. Operation of the rechargeable Li-O2
    battery depends critically on repeated and highly reversible formation/decomposition
    of lithium peroxide (Li2O2) at the cathode upon cycling. Here, we show that this
    process is possible with the use of a dimethyl sulfoxide electrolyte and a porous
    gold electrode (95% capacity retention from cycles 1 to 100), whereas previously
    only partial Li2O2 formation/decomposition and limited cycling could occur. Furthermore,
    we present data indicating that the kinetics of Li2O2 oxidation on charge is approximately
    10 times faster than on carbon electrodes.
article_processing_charge: No
article_type: original
author:
- first_name: Z.
  full_name: Peng, Z.
  last_name: Peng
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Y.
  full_name: Chen, Y.
  last_name: Chen
- first_name: P. G.
  full_name: Bruce, P. G.
  last_name: Bruce
citation:
  ama: Peng Z, Freunberger SA, Chen Y, Bruce PG. A reversible and higher-rate Li-O2
    battery. <i>Science</i>. 2012;337(6094):563-566. doi:<a href="https://doi.org/10.1126/science.1223985">10.1126/science.1223985</a>
  apa: Peng, Z., Freunberger, S. A., Chen, Y., &#38; Bruce, P. G. (2012). A reversible
    and higher-rate Li-O2 battery. <i>Science</i>. AAAS. <a href="https://doi.org/10.1126/science.1223985">https://doi.org/10.1126/science.1223985</a>
  chicago: Peng, Z., Stefan Alexander Freunberger, Y. Chen, and P. G. Bruce. “A Reversible
    and Higher-Rate Li-O2 Battery.” <i>Science</i>. AAAS, 2012. <a href="https://doi.org/10.1126/science.1223985">https://doi.org/10.1126/science.1223985</a>.
  ieee: Z. Peng, S. A. Freunberger, Y. Chen, and P. G. Bruce, “A reversible and higher-rate
    Li-O2 battery,” <i>Science</i>, vol. 337, no. 6094. AAAS, pp. 563–566, 2012.
  ista: Peng Z, Freunberger SA, Chen Y, Bruce PG. 2012. A reversible and higher-rate
    Li-O2 battery. Science. 337(6094), 563–566.
  mla: Peng, Z., et al. “A Reversible and Higher-Rate Li-O2 Battery.” <i>Science</i>,
    vol. 337, no. 6094, AAAS, 2012, pp. 563–66, doi:<a href="https://doi.org/10.1126/science.1223985">10.1126/science.1223985</a>.
  short: Z. Peng, S.A. Freunberger, Y. Chen, P.G. Bruce, Science 337 (2012) 563–566.
date_created: 2020-01-15T12:19:23Z
date_published: 2012-08-03T00:00:00Z
date_updated: 2021-01-12T08:12:57Z
day: '03'
doi: 10.1126/science.1223985
extern: '1'
intvolume: '       337'
issue: '6094'
language:
- iso: eng
month: '08'
oa_version: None
page: 563-566
publication: Science
publication_identifier:
  issn:
  - 0036-8075
  - 1095-9203
publication_status: published
publisher: AAAS
quality_controlled: '1'
status: public
title: A reversible and higher-rate Li-O2 battery
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 337
year: '2012'
...
---
_id: '9451'
abstract:
- lang: eng
  text: The Arabidopsis thaliana central cell, the companion cell of the egg, undergoes
    DNA demethylation before fertilization, but the targeting preferences, mechanism,
    and biological significance of this process remain unclear. Here, we show that
    active DNA demethylation mediated by the DEMETER DNA glycosylase accounts for
    all of the demethylation in the central cell and preferentially targets small,
    AT-rich, and nucleosome-depleted euchromatic transposable elements. The vegetative
    cell, the companion cell of sperm, also undergoes DEMETER-dependent demethylation
    of similar sequences, and lack of DEMETER in vegetative cells causes reduced small
    RNA–directed DNA methylation of transposons in sperm. Our results demonstrate
    that demethylation in companion cells reinforces transposon methylation in plant
    gametes and likely contributes to stable silencing of transposable elements across
    generations.
article_processing_charge: No
article_type: original
author:
- first_name: Christian A.
  full_name: Ibarra, Christian A.
  last_name: Ibarra
- first_name: Xiaoqi
  full_name: Feng, Xiaoqi
  last_name: Feng
- first_name: Vera K.
  full_name: Schoft, Vera K.
  last_name: Schoft
- first_name: Tzung-Fu
  full_name: Hsieh, Tzung-Fu
  last_name: Hsieh
- first_name: Rie
  full_name: Uzawa, Rie
  last_name: Uzawa
- first_name: Jessica A.
  full_name: Rodrigues, Jessica A.
  last_name: Rodrigues
- first_name: Assaf
  full_name: Zemach, Assaf
  last_name: Zemach
- first_name: Nina
  full_name: Chumak, Nina
  last_name: Chumak
- first_name: Adriana
  full_name: Machlicova, Adriana
  last_name: Machlicova
- first_name: Toshiro
  full_name: Nishimura, Toshiro
  last_name: Nishimura
- first_name: Denisse
  full_name: Rojas, Denisse
  last_name: Rojas
- first_name: Robert L.
  full_name: Fischer, Robert L.
  last_name: Fischer
- first_name: Hisashi
  full_name: Tamaru, Hisashi
  last_name: Tamaru
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
citation:
  ama: Ibarra CA, Feng X, Schoft VK, et al. Active DNA demethylation in plant companion
    cells reinforces transposon methylation in gametes. <i>Science</i>. 2012;337(6100):1360-1364.
    doi:<a href="https://doi.org/10.1126/science.1224839">10.1126/science.1224839</a>
  apa: Ibarra, C. A., Feng, X., Schoft, V. K., Hsieh, T.-F., Uzawa, R., Rodrigues,
    J. A., … Zilberman, D. (2012). Active DNA demethylation in plant companion cells
    reinforces transposon methylation in gametes. <i>Science</i>. American Association
    for the Advancement of Science. <a href="https://doi.org/10.1126/science.1224839">https://doi.org/10.1126/science.1224839</a>
  chicago: Ibarra, Christian A., Xiaoqi Feng, Vera K. Schoft, Tzung-Fu Hsieh, Rie
    Uzawa, Jessica A. Rodrigues, Assaf Zemach, et al. “Active DNA Demethylation in
    Plant Companion Cells Reinforces Transposon Methylation in Gametes.” <i>Science</i>.
    American Association for the Advancement of Science, 2012. <a href="https://doi.org/10.1126/science.1224839">https://doi.org/10.1126/science.1224839</a>.
  ieee: C. A. Ibarra <i>et al.</i>, “Active DNA demethylation in plant companion cells
    reinforces transposon methylation in gametes,” <i>Science</i>, vol. 337, no. 6100.
    American Association for the Advancement of Science, pp. 1360–1364, 2012.
  ista: Ibarra CA, Feng X, Schoft VK, Hsieh T-F, Uzawa R, Rodrigues JA, Zemach A,
    Chumak N, Machlicova A, Nishimura T, Rojas D, Fischer RL, Tamaru H, Zilberman
    D. 2012. Active DNA demethylation in plant companion cells reinforces transposon
    methylation in gametes. Science. 337(6100), 1360–1364.
  mla: Ibarra, Christian A., et al. “Active DNA Demethylation in Plant Companion Cells
    Reinforces Transposon Methylation in Gametes.” <i>Science</i>, vol. 337, no. 6100,
    American Association for the Advancement of Science, 2012, pp. 1360–64, doi:<a
    href="https://doi.org/10.1126/science.1224839">10.1126/science.1224839</a>.
  short: C.A. Ibarra, X. Feng, V.K. Schoft, T.-F. Hsieh, R. Uzawa, J.A. Rodrigues,
    A. Zemach, N. Chumak, A. Machlicova, T. Nishimura, D. Rojas, R.L. Fischer, H.
    Tamaru, D. Zilberman, Science 337 (2012) 1360–1364.
date_created: 2021-06-04T07:51:31Z
date_published: 2012-09-14T00:00:00Z
date_updated: 2021-12-14T08:28:51Z
day: '14'
ddc:
- '580'
department:
- _id: DaZi
doi: 10.1126/science.1224839
extern: '1'
external_id:
  pmid:
  - '22984074'
has_accepted_license: '1'
intvolume: '       337'
issue: '6100'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4034762/
month: '09'
oa: 1
oa_version: Published Version
page: 1360-1364
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Active DNA demethylation in plant companion cells reinforces transposon methylation
  in gametes
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 337
year: '2012'
...
---
_id: '11092'
abstract:
- lang: eng
  text: To combat the functional decline of the proteome, cells use the process of
    protein turnover to replace potentially impaired polypeptides with new functional
    copies. We found that extremely long-lived proteins (ELLPs) did not turn over
    in postmitotic cells of the rat central nervous system. These ELLPs were associated
    with chromatin and the nuclear pore complex, the central transport channels that
    mediate all molecular trafficking in and out of the nucleus. The longevity of
    these proteins would be expected to expose them to potentially harmful metabolites,
    putting them at risk of accumulating damage over extended periods of time. Thus,
    it is possible that failure to maintain proper levels and functional integrity
    of ELLPs in nonproliferative cells might contribute to age-related deterioration
    in cell and tissue function.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Jeffrey N.
  full_name: Savas, Jeffrey N.
  last_name: Savas
- first_name: Brandon H.
  full_name: Toyama, Brandon H.
  last_name: Toyama
- first_name: Tao
  full_name: Xu, Tao
  last_name: Xu
- first_name: John R.
  full_name: Yates, John R.
  last_name: Yates
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Savas JN, Toyama BH, Xu T, Yates JR, Hetzer M. Extremely long-lived nuclear
    pore proteins in the rat brain. <i>Science</i>. 2012;335(6071):942-942. doi:<a
    href="https://doi.org/10.1126/science.1217421">10.1126/science.1217421</a>
  apa: Savas, J. N., Toyama, B. H., Xu, T., Yates, J. R., &#38; Hetzer, M. (2012).
    Extremely long-lived nuclear pore proteins in the rat brain. <i>Science</i>. American
    Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1217421">https://doi.org/10.1126/science.1217421</a>
  chicago: Savas, Jeffrey N., Brandon H. Toyama, Tao Xu, John R. Yates, and Martin
    Hetzer. “Extremely Long-Lived Nuclear Pore Proteins in the Rat Brain.” <i>Science</i>.
    American Association for the Advancement of Science, 2012. <a href="https://doi.org/10.1126/science.1217421">https://doi.org/10.1126/science.1217421</a>.
  ieee: J. N. Savas, B. H. Toyama, T. Xu, J. R. Yates, and M. Hetzer, “Extremely long-lived
    nuclear pore proteins in the rat brain,” <i>Science</i>, vol. 335, no. 6071. American
    Association for the Advancement of Science, pp. 942–942, 2012.
  ista: Savas JN, Toyama BH, Xu T, Yates JR, Hetzer M. 2012. Extremely long-lived
    nuclear pore proteins in the rat brain. Science. 335(6071), 942–942.
  mla: Savas, Jeffrey N., et al. “Extremely Long-Lived Nuclear Pore Proteins in the
    Rat Brain.” <i>Science</i>, vol. 335, no. 6071, American Association for the Advancement
    of Science, 2012, pp. 942–942, doi:<a href="https://doi.org/10.1126/science.1217421">10.1126/science.1217421</a>.
  short: J.N. Savas, B.H. Toyama, T. Xu, J.R. Yates, M. Hetzer, Science 335 (2012)
    942–942.
date_created: 2022-04-07T07:52:01Z
date_published: 2012-02-02T00:00:00Z
date_updated: 2022-07-18T08:53:06Z
day: '02'
doi: 10.1126/science.1217421
extern: '1'
external_id:
  pmid:
  - '22300851'
intvolume: '       335'
issue: '6071'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '02'
oa_version: None
page: 942-942
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Extremely long-lived nuclear pore proteins in the rat brain
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 335
year: '2012'
...
---
_id: '8074'
abstract:
- lang: eng
  text: Cortical neurons receive balanced excitatory and inhibitory synaptic currents.
    Such a balance could be established and maintained in an experience-dependent
    manner by synaptic plasticity at inhibitory synapses. We show that this mechanism
    provides an explanation for the sparse firing patterns observed in response to
    natural stimuli and fits well with a recently observed interaction of excitatory
    and inhibitory receptive field plasticity. The introduction of inhibitory plasticity
    in suitable recurrent networks provides a homeostatic mechanism that leads to
    asynchronous irregular network states. Further, it can accommodate synaptic memories
    with activity patterns that become indiscernible from the background state but
    can be reactivated by external stimuli. Our results suggest an essential role
    of inhibitory plasticity in the formation and maintenance of functional cortical
    circuitry.
article_processing_charge: No
article_type: original
author:
- first_name: Tim P
  full_name: Vogels, Tim P
  id: CB6FF8D2-008F-11EA-8E08-2637E6697425
  last_name: Vogels
  orcid: 0000-0003-3295-6181
- first_name: H.
  full_name: Sprekeler, H.
  last_name: Sprekeler
- first_name: F.
  full_name: Zenke, F.
  last_name: Zenke
- first_name: C.
  full_name: Clopath, C.
  last_name: Clopath
- first_name: W.
  full_name: Gerstner, W.
  last_name: Gerstner
citation:
  ama: Vogels TP, Sprekeler H, Zenke F, Clopath C, Gerstner W. Inhibitory plasticity
    balances excitation and inhibition in sensory pathways and memory networks. <i>Science</i>.
    2011;334(6062):1569-1573. doi:<a href="https://doi.org/10.1126/science.1211095">10.1126/science.1211095</a>
  apa: Vogels, T. P., Sprekeler, H., Zenke, F., Clopath, C., &#38; Gerstner, W. (2011).
    Inhibitory plasticity balances excitation and inhibition in sensory pathways and
    memory networks. <i>Science</i>. American Association for the Advancement of Science.
    <a href="https://doi.org/10.1126/science.1211095">https://doi.org/10.1126/science.1211095</a>
  chicago: Vogels, Tim P, H. Sprekeler, F. Zenke, C. Clopath, and W. Gerstner. “Inhibitory
    Plasticity Balances Excitation and Inhibition in Sensory Pathways and Memory Networks.”
    <i>Science</i>. American Association for the Advancement of Science, 2011. <a
    href="https://doi.org/10.1126/science.1211095">https://doi.org/10.1126/science.1211095</a>.
  ieee: T. P. Vogels, H. Sprekeler, F. Zenke, C. Clopath, and W. Gerstner, “Inhibitory
    plasticity balances excitation and inhibition in sensory pathways and memory networks,”
    <i>Science</i>, vol. 334, no. 6062. American Association for the Advancement of
    Science, pp. 1569–1573, 2011.
  ista: Vogels TP, Sprekeler H, Zenke F, Clopath C, Gerstner W. 2011. Inhibitory plasticity
    balances excitation and inhibition in sensory pathways and memory networks. Science.
    334(6062), 1569–1573.
  mla: Vogels, Tim P., et al. “Inhibitory Plasticity Balances Excitation and Inhibition
    in Sensory Pathways and Memory Networks.” <i>Science</i>, vol. 334, no. 6062,
    American Association for the Advancement of Science, 2011, pp. 1569–73, doi:<a
    href="https://doi.org/10.1126/science.1211095">10.1126/science.1211095</a>.
  short: T.P. Vogels, H. Sprekeler, F. Zenke, C. Clopath, W. Gerstner, Science 334
    (2011) 1569–1573.
date_created: 2020-06-30T13:26:17Z
date_published: 2011-12-16T00:00:00Z
date_updated: 2021-06-02T14:57:22Z
day: '16'
doi: 10.1126/science.1211095
extern: '1'
external_id:
  pmid:
  - '22075724'
intvolume: '       334'
issue: '6062'
language:
- iso: eng
month: '12'
oa_version: None
page: 1569-1573
pmid: 1
publication: Science
publication_identifier:
  issn:
  - 0036-8075
  - 1095-9203
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1126/science.336.6083.802-c
scopus_import: '1'
status: public
title: Inhibitory plasticity balances excitation and inhibition in sensory pathways
  and memory networks
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 334
year: '2011'
...
---
_id: '9452'
abstract:
- lang: eng
  text: Eukaryotic cytosine methylation represses transcription but also occurs in
    the bodies of active genes, and the extent of methylation biology conservation
    is unclear. We quantified DNA methylation in 17 eukaryotic genomes and found that
    gene body methylation is conserved between plants and animals, whereas selective
    methylation of transposons is not. We show that methylation of plant transposons
    in the CHG context extends to green algae and that exclusion of histone H2A.Z
    from methylated DNA is conserved between plants and animals, and we present evidence
    for RNA-directed DNA methylation of fungal genes. Our data demonstrate that extant
    DNA methylation systems are mosaics of conserved and derived features, and indicate
    that gene body methylation is an ancient property of eukaryotic genomes.
article_processing_charge: No
article_type: original
author:
- first_name: 'Assaf '
  full_name: 'Zemach, Assaf '
  last_name: Zemach
- first_name: Ivy E.
  full_name: McDaniel, Ivy E.
  last_name: McDaniel
- first_name: Pedro
  full_name: Silva, Pedro
  last_name: Silva
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
citation:
  ama: Zemach A, McDaniel IE, Silva P, Zilberman D. Genome-wide evolutionary analysis
    of eukaryotic DNA methylation. <i>Science</i>. 2010;328(5980):916-919. doi:<a
    href="https://doi.org/10.1126/science.1186366">10.1126/science.1186366</a>
  apa: Zemach, A., McDaniel, I. E., Silva, P., &#38; Zilberman, D. (2010). Genome-wide
    evolutionary analysis of eukaryotic DNA methylation. <i>Science</i>. American
    Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1186366">https://doi.org/10.1126/science.1186366</a>
  chicago: Zemach, Assaf , Ivy E. McDaniel, Pedro Silva, and Daniel Zilberman. “Genome-Wide
    Evolutionary Analysis of Eukaryotic DNA Methylation.” <i>Science</i>. American
    Association for the Advancement of Science, 2010. <a href="https://doi.org/10.1126/science.1186366">https://doi.org/10.1126/science.1186366</a>.
  ieee: A. Zemach, I. E. McDaniel, P. Silva, and D. Zilberman, “Genome-wide evolutionary
    analysis of eukaryotic DNA methylation,” <i>Science</i>, vol. 328, no. 5980. American
    Association for the Advancement of Science, pp. 916–919, 2010.
  ista: Zemach A, McDaniel IE, Silva P, Zilberman D. 2010. Genome-wide evolutionary
    analysis of eukaryotic DNA methylation. Science. 328(5980), 916–919.
  mla: Zemach, Assaf, et al. “Genome-Wide Evolutionary Analysis of Eukaryotic DNA
    Methylation.” <i>Science</i>, vol. 328, no. 5980, American Association for the
    Advancement of Science, 2010, pp. 916–19, doi:<a href="https://doi.org/10.1126/science.1186366">10.1126/science.1186366</a>.
  short: A. Zemach, I.E. McDaniel, P. Silva, D. Zilberman, Science 328 (2010) 916–919.
date_created: 2021-06-04T08:26:08Z
date_published: 2010-05-14T00:00:00Z
date_updated: 2021-12-14T08:35:37Z
day: '14'
department:
- _id: DaZi
doi: 10.1126/science.1186366
extern: '1'
external_id:
  pmid:
  - '20395474 '
intvolume: '       328'
issue: '5980'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '05'
oa_version: None
page: 916-919
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Genome-wide evolutionary analysis of eukaryotic DNA methylation
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 328
year: '2010'
...
---
_id: '9453'
abstract:
- lang: eng
  text: Parent-of-origin-specific (imprinted) gene expression is regulated in Arabidopsis
    thaliana endosperm by cytosine demethylation of the maternal genome mediated by
    the DNA glycosylase DEMETER, but the extent of the methylation changes is not
    known. Here, we show that virtually the entire endosperm genome is demethylated,
    coupled with extensive local non-CG hypermethylation of small interfering RNA–targeted
    sequences. Mutation of DEMETER partially restores endosperm CG methylation to
    levels found in other tissues, indicating that CG demethylation is specific to
    maternal sequences. Endosperm demethylation is accompanied by CHH hypermethylation
    of embryo transposable elements. Our findings demonstrate extensive reconfiguration
    of the endosperm methylation landscape that likely reinforces transposon silencing
    in the embryo.
article_processing_charge: No
article_type: original
author:
- first_name: Tzung-Fu
  full_name: Hsieh, Tzung-Fu
  last_name: Hsieh
- first_name: Christian A.
  full_name: Ibarra, Christian A.
  last_name: Ibarra
- first_name: Pedro
  full_name: Silva, Pedro
  last_name: Silva
- first_name: Assaf
  full_name: Zemach, Assaf
  last_name: Zemach
- first_name: Leor
  full_name: Eshed-Williams, Leor
  last_name: Eshed-Williams
- first_name: Robert L.
  full_name: Fischer, Robert L.
  last_name: Fischer
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
citation:
  ama: Hsieh T-F, Ibarra CA, Silva P, et al. Genome-wide demethylation of Arabidopsis
    endosperm. <i>Science</i>. 2009;324(5933):1451-1454. doi:<a href="https://doi.org/10.1126/science.1172417">10.1126/science.1172417</a>
  apa: Hsieh, T.-F., Ibarra, C. A., Silva, P., Zemach, A., Eshed-Williams, L., Fischer,
    R. L., &#38; Zilberman, D. (2009). Genome-wide demethylation of Arabidopsis endosperm.
    <i>Science</i>. American Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1172417">https://doi.org/10.1126/science.1172417</a>
  chicago: Hsieh, Tzung-Fu, Christian A. Ibarra, Pedro Silva, Assaf Zemach, Leor Eshed-Williams,
    Robert L. Fischer, and Daniel Zilberman. “Genome-Wide Demethylation of Arabidopsis
    Endosperm.” <i>Science</i>. American Association for the Advancement of Science,
    2009. <a href="https://doi.org/10.1126/science.1172417">https://doi.org/10.1126/science.1172417</a>.
  ieee: T.-F. Hsieh <i>et al.</i>, “Genome-wide demethylation of Arabidopsis endosperm,”
    <i>Science</i>, vol. 324, no. 5933. American Association for the Advancement of
    Science, pp. 1451–1454, 2009.
  ista: Hsieh T-F, Ibarra CA, Silva P, Zemach A, Eshed-Williams L, Fischer RL, Zilberman
    D. 2009. Genome-wide demethylation of Arabidopsis endosperm. Science. 324(5933),
    1451–1454.
  mla: Hsieh, Tzung-Fu, et al. “Genome-Wide Demethylation of Arabidopsis Endosperm.”
    <i>Science</i>, vol. 324, no. 5933, American Association for the Advancement of
    Science, 2009, pp. 1451–54, doi:<a href="https://doi.org/10.1126/science.1172417">10.1126/science.1172417</a>.
  short: T.-F. Hsieh, C.A. Ibarra, P. Silva, A. Zemach, L. Eshed-Williams, R.L. Fischer,
    D. Zilberman, Science 324 (2009) 1451–1454.
date_created: 2021-06-04T08:55:41Z
date_published: 2009-06-12T00:00:00Z
date_updated: 2021-12-14T08:53:26Z
day: '12'
department:
- _id: DaZi
doi: 10.1126/science.1172417
extern: '1'
external_id:
  pmid:
  - '19520962'
intvolume: '       324'
issue: '5933'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4044190/
month: '06'
oa: 1
oa_version: Submitted Version
page: 1451-1454
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Genome-wide demethylation of Arabidopsis endosperm
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 324
year: '2009'
...
---
_id: '13427'
abstract:
- lang: eng
  text: Deformable, spherical aggregates of metal nanoparticles connected by long-chain
    dithiol ligands self-assemble into nanostructured materials of macroscopic dimensions.
    These materials are plastic and moldable against arbitrarily shaped masters and
    can be thermally hardened into polycrystalline metal structures of controllable
    porosity. In addition, in both plastic and hardened states, the assemblies are
    electrically conductive and exhibit Ohmic characteristics down to ∼20 volts per
    meter. The self-assembly method leading to such materials is applicable both to
    pure metals and to bimetallic structures of various elemental compositions.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Kyle J. M.
  full_name: Bishop, Kyle J. M.
  last_name: Bishop
- first_name: Marcin
  full_name: Fialkowski, Marcin
  last_name: Fialkowski
- first_name: Maciej
  full_name: Paszewski, Maciej
  last_name: Paszewski
- first_name: Christopher J.
  full_name: Campbell, Christopher J.
  last_name: Campbell
- first_name: Timothy P.
  full_name: Gray, Timothy P.
  last_name: Gray
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: Klajn R, Bishop KJM, Fialkowski M, et al. Plastic and moldable metals by self-assembly
    of sticky nanoparticle aggregates. <i>Science</i>. 2007;316(5822):261-264. doi:<a
    href="https://doi.org/10.1126/science.1139131">10.1126/science.1139131</a>
  apa: Klajn, R., Bishop, K. J. M., Fialkowski, M., Paszewski, M., Campbell, C. J.,
    Gray, T. P., &#38; Grzybowski, B. A. (2007). Plastic and moldable metals by self-assembly
    of sticky nanoparticle aggregates. <i>Science</i>. American Association for the
    Advancement of Science. <a href="https://doi.org/10.1126/science.1139131">https://doi.org/10.1126/science.1139131</a>
  chicago: Klajn, Rafal, Kyle J. M. Bishop, Marcin Fialkowski, Maciej Paszewski, Christopher
    J. Campbell, Timothy P. Gray, and Bartosz A. Grzybowski. “Plastic and Moldable
    Metals by Self-Assembly of Sticky Nanoparticle Aggregates.” <i>Science</i>. American
    Association for the Advancement of Science, 2007. <a href="https://doi.org/10.1126/science.1139131">https://doi.org/10.1126/science.1139131</a>.
  ieee: R. Klajn <i>et al.</i>, “Plastic and moldable metals by self-assembly of sticky
    nanoparticle aggregates,” <i>Science</i>, vol. 316, no. 5822. American Association
    for the Advancement of Science, pp. 261–264, 2007.
  ista: Klajn R, Bishop KJM, Fialkowski M, Paszewski M, Campbell CJ, Gray TP, Grzybowski
    BA. 2007. Plastic and moldable metals by self-assembly of sticky nanoparticle
    aggregates. Science. 316(5822), 261–264.
  mla: Klajn, Rafal, et al. “Plastic and Moldable Metals by Self-Assembly of Sticky
    Nanoparticle Aggregates.” <i>Science</i>, vol. 316, no. 5822, American Association
    for the Advancement of Science, 2007, pp. 261–64, doi:<a href="https://doi.org/10.1126/science.1139131">10.1126/science.1139131</a>.
  short: R. Klajn, K.J.M. Bishop, M. Fialkowski, M. Paszewski, C.J. Campbell, T.P.
    Gray, B.A. Grzybowski, Science 316 (2007) 261–264.
date_created: 2023-08-01T10:36:08Z
date_published: 2007-04-13T00:00:00Z
date_updated: 2023-08-08T11:28:29Z
day: '13'
doi: 10.1126/science.1139131
extern: '1'
external_id:
  pmid:
  - '17431176'
intvolume: '       316'
issue: '5822'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '04'
oa_version: None
page: 261-264
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Plastic and moldable metals by self-assembly of sticky nanoparticle aggregates
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 316
year: '2007'
...
---
_id: '11884'
abstract:
- lang: eng
  text: About 20% of the world's population uses the Web, and a large majority thereof
    uses Web search engines to find information. As a result, many Web researchers
    are devoting much effort to improving the speed and capability of search technology.
article_processing_charge: No
article_type: review
author:
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
citation:
  ama: Henzinger MH. Search technologies for the internet. <i>Science</i>. 2007;317(5837):468-471.
    doi:<a href="https://doi.org/10.1126/science.1126557">10.1126/science.1126557</a>
  apa: Henzinger, M. H. (2007). Search technologies for the internet. <i>Science</i>.
    American Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1126557">https://doi.org/10.1126/science.1126557</a>
  chicago: Henzinger, Monika H. “Search Technologies for the Internet.” <i>Science</i>.
    American Association for the Advancement of Science, 2007. <a href="https://doi.org/10.1126/science.1126557">https://doi.org/10.1126/science.1126557</a>.
  ieee: M. H. Henzinger, “Search technologies for the internet,” <i>Science</i>, vol.
    317, no. 5837. American Association for the Advancement of Science, pp. 468–471,
    2007.
  ista: Henzinger MH. 2007. Search technologies for the internet. Science. 317(5837),
    468–471.
  mla: Henzinger, Monika H. “Search Technologies for the Internet.” <i>Science</i>,
    vol. 317, no. 5837, American Association for the Advancement of Science, 2007,
    pp. 468–71, doi:<a href="https://doi.org/10.1126/science.1126557">10.1126/science.1126557</a>.
  short: M.H. Henzinger, Science 317 (2007) 468–471.
date_created: 2022-08-17T07:30:07Z
date_published: 2007-07-27T00:00:00Z
date_updated: 2023-02-17T14:07:49Z
day: '27'
doi: 10.1126/science.1126557
extern: '1'
external_id:
  pmid:
  - '17656714'
intvolume: '       317'
issue: '5837'
language:
- iso: eng
month: '07'
oa_version: None
page: 468-471
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Search technologies for the internet
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 317
year: '2007'
...
---
_id: '11118'
abstract:
- lang: eng
  text: Nuclear pore complexes are multiprotein channels that span the double lipid
    bilayer of the nuclear envelope. How new pores are inserted into the intact nuclear
    envelope of proliferating and differentiating eukaryotic cells is unknown. We
    found that the Nup107-160 complex was incorporated into assembly sites in the
    nuclear envelope from both the nucleoplasmic and the cytoplasmic sides. Nuclear
    pore insertion required the generation of Ran guanosine triphosphate in the nuclear
    and cytoplasmic compartments. Newly formed nuclear pore complexes did not contain
    structural components of preexisting pores, suggesting that they can form de novo.
article_processing_charge: No
article_type: original
author:
- first_name: Maximiliano A.
  full_name: D'Angelo, Maximiliano A.
  last_name: D'Angelo
- first_name: Daniel J.
  full_name: Anderson, Daniel J.
  last_name: Anderson
- first_name: Erin
  full_name: Richard, Erin
  last_name: Richard
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: D’Angelo MA, Anderson DJ, Richard E, Hetzer M. Nuclear pores form de novo from
    both sides of the nuclear envelope. <i>Science</i>. 2006;312(5772):440-443. doi:<a
    href="https://doi.org/10.1126/science.1124196">10.1126/science.1124196</a>
  apa: D’Angelo, M. A., Anderson, D. J., Richard, E., &#38; Hetzer, M. (2006). Nuclear
    pores form de novo from both sides of the nuclear envelope. <i>Science</i>. American
    Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1124196">https://doi.org/10.1126/science.1124196</a>
  chicago: D’Angelo, Maximiliano A., Daniel J. Anderson, Erin Richard, and Martin
    Hetzer. “Nuclear Pores Form de Novo from Both Sides of the Nuclear Envelope.”
    <i>Science</i>. American Association for the Advancement of Science, 2006. <a
    href="https://doi.org/10.1126/science.1124196">https://doi.org/10.1126/science.1124196</a>.
  ieee: M. A. D’Angelo, D. J. Anderson, E. Richard, and M. Hetzer, “Nuclear pores
    form de novo from both sides of the nuclear envelope,” <i>Science</i>, vol. 312,
    no. 5772. American Association for the Advancement of Science, pp. 440–443, 2006.
  ista: D’Angelo MA, Anderson DJ, Richard E, Hetzer M. 2006. Nuclear pores form de
    novo from both sides of the nuclear envelope. Science. 312(5772), 440–443.
  mla: D’Angelo, Maximiliano A., et al. “Nuclear Pores Form de Novo from Both Sides
    of the Nuclear Envelope.” <i>Science</i>, vol. 312, no. 5772, American Association
    for the Advancement of Science, 2006, pp. 440–43, doi:<a href="https://doi.org/10.1126/science.1124196">10.1126/science.1124196</a>.
  short: M.A. D’Angelo, D.J. Anderson, E. Richard, M. Hetzer, Science 312 (2006) 440–443.
date_created: 2022-04-07T07:56:32Z
date_published: 2006-04-21T00:00:00Z
date_updated: 2022-07-18T08:57:04Z
day: '21'
doi: 10.1126/science.1124196
extern: '1'
external_id:
  pmid:
  - '16627745'
intvolume: '       312'
issue: '5772'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '04'
oa_version: None
page: 440-443
pmid: 1
publication: Science
publication_identifier:
  issn:
  - 0036-8075
  - 1095-9203
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nuclear pores form de novo from both sides of the nuclear envelope
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 312
year: '2006'
...
---
_id: '7706'
abstract:
- lang: eng
  text: 'The Sir2 deacetylase modulates organismal life-span in various species. However,
    the molecular mechanisms by which Sir2 increases longevity are largely unknown.
    We show that in mammalian cells, the Sir2 homolog SIRT1 appears to control the
    cellular response to stress by regulating the FOXO family of Forkhead transcription
    factors, a family of proteins that function as sensors of the insulin signaling
    pathway and as regulators of organismal longevity. SIRT1 and the FOXO transcription
    factor FOXO3 formed a complex in cells in response to oxidative stress, and SIRT1
    deacetylated FOXO3 in vitro and within cells. SIRT1 had a dual effect on FOXO3
    function: SIRT1 increased FOXO3''s ability to induce cell cycle arrest and resistance
    to oxidative stress but inhibited FOXO3''s ability to induce cell death. Thus,
    one way in which members of the Sir2 family of proteins may increase organismal
    longevity is by tipping FOXO-dependent responses away from apoptosis and toward
    stress resistance.'
article_processing_charge: No
article_type: original
author:
- first_name: Anne
  full_name: Brunet, Anne
  last_name: Brunet
- first_name: Lora Beatrice Jaeger
  full_name: Sweeney, Lora Beatrice Jaeger
  id: 56BE8254-C4F0-11E9-8E45-0B23E6697425
  last_name: Sweeney
  orcid: 0000-0001-9242-5601
- first_name: 'J Fitzhugh '
  full_name: 'Sturgill, J Fitzhugh '
  last_name: Sturgill
- first_name: Katrin
  full_name: Chua, Katrin
  last_name: Chua
- first_name: Paul
  full_name: Greer, Paul
  last_name: Greer
- first_name: Yingxi
  full_name: Lin, Yingxi
  last_name: Lin
- first_name: Hien
  full_name: Tran, Hien
  last_name: Tran
- first_name: Sarah
  full_name: Ross, Sarah
  last_name: Ross
- first_name: Raul
  full_name: Mostoslavsky, Raul
  last_name: Mostoslavsky
- first_name: Haim
  full_name: Cohen, Haim
  last_name: Cohen
- first_name: Linda
  full_name: Hu, Linda
  last_name: Hu
- first_name: Hwei-Ling
  full_name: Chen, Hwei-Ling
  last_name: Chen
- first_name: Mark
  full_name: Jedrychowski, Mark
  last_name: Jedrychowski
- first_name: Steven
  full_name: Gygi, Steven
  last_name: Gygi
- first_name: David
  full_name: Sinclair, David
  last_name: Sinclair
- first_name: Frederick
  full_name: Alt, Frederick
  last_name: Alt
- first_name: Michael
  full_name: Greenberg, Michael
  last_name: Greenberg
citation:
  ama: Brunet A, Sweeney LB, Sturgill JF, et al. Stress-dependent regulation of FOXO
    transcription factors by the SIRT1 deacetylase. <i>Science</i>. 2004;303(5666):2011-2015.
    doi:<a href="https://doi.org/10.1126/science.1094637">10.1126/science.1094637</a>
  apa: Brunet, A., Sweeney, L. B., Sturgill, J. F., Chua, K., Greer, P., Lin, Y.,
    … Greenberg, M. (2004). Stress-dependent regulation of FOXO transcription factors
    by the SIRT1 deacetylase. <i>Science</i>. American Association for the Advancement
    of Science. <a href="https://doi.org/10.1126/science.1094637">https://doi.org/10.1126/science.1094637</a>
  chicago: Brunet, Anne, Lora B. Sweeney, J Fitzhugh  Sturgill, Katrin Chua, Paul
    Greer, Yingxi Lin, Hien Tran, et al. “Stress-Dependent Regulation of FOXO Transcription
    Factors by the SIRT1 Deacetylase.” <i>Science</i>. American Association for the
    Advancement of Science, 2004. <a href="https://doi.org/10.1126/science.1094637">https://doi.org/10.1126/science.1094637</a>.
  ieee: A. Brunet <i>et al.</i>, “Stress-dependent regulation of FOXO transcription
    factors by the SIRT1 deacetylase,” <i>Science</i>, vol. 303, no. 5666. American
    Association for the Advancement of Science, pp. 2011–2015, 2004.
  ista: Brunet A, Sweeney LB, Sturgill JF, Chua K, Greer P, Lin Y, Tran H, Ross S,
    Mostoslavsky R, Cohen H, Hu L, Chen H-L, Jedrychowski M, Gygi S, Sinclair D, Alt
    F, Greenberg M. 2004. Stress-dependent regulation of FOXO transcription factors
    by the SIRT1 deacetylase. Science. 303(5666), 2011–2015.
  mla: Brunet, Anne, et al. “Stress-Dependent Regulation of FOXO Transcription Factors
    by the SIRT1 Deacetylase.” <i>Science</i>, vol. 303, no. 5666, American Association
    for the Advancement of Science, 2004, pp. 2011–15, doi:<a href="https://doi.org/10.1126/science.1094637">10.1126/science.1094637</a>.
  short: A. Brunet, L.B. Sweeney, J.F. Sturgill, K. Chua, P. Greer, Y. Lin, H. Tran,
    S. Ross, R. Mostoslavsky, H. Cohen, L. Hu, H.-L. Chen, M. Jedrychowski, S. Gygi,
    D. Sinclair, F. Alt, M. Greenberg, Science 303 (2004) 2011–2015.
date_created: 2020-04-30T10:37:41Z
date_published: 2004-03-26T00:00:00Z
date_updated: 2024-01-31T10:14:17Z
day: '26'
doi: 10.1126/science.1094637
extern: '1'
intvolume: '       303'
issue: '5666'
language:
- iso: eng
month: '03'
oa_version: None
page: 2011-2015
publication: Science
publication_identifier:
  issn:
  - 0036-8075
  - 1095-9203
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
status: public
title: Stress-dependent regulation of FOXO transcription factors by the SIRT1 deacetylase
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 303
year: '2004'
...
