---
_id: '8608'
abstract:
- lang: eng
  text: To adapt to the diverse array of biotic and abiotic cues, plants have evolved
    sophisticated mechanisms to sense changes in environmental conditions and modulate
    their growth. Growth-promoting hormones and defence signalling fine tune plant
    development antagonistically. During host-pathogen interactions, this defence-growth
    trade-off is mediated by the counteractive effects of the defence hormone salicylic
    acid (SA) and the growth hormone auxin. Here we revealed an underlying mechanism
    of SA regulating auxin signalling by constraining the plasma membrane dynamics
    of PIN2 auxin efflux transporter in Arabidopsis thaliana roots. The lateral diffusion
    of PIN2 proteins is constrained by SA signalling, during which PIN2 proteins are
    condensed into hyperclusters depending on REM1.2-mediated nanodomain compartmentalisation.
    Furthermore, membrane nanodomain compartmentalisation by SA or Remorin (REM) assembly
    significantly suppressed clathrin-mediated endocytosis. Consequently, SA-induced
    heterogeneous surface condensation disrupted asymmetric auxin distribution and
    the resultant gravitropic response. Our results demonstrated a defence-growth
    trade-off mechanism by which SA signalling crosstalked with auxin transport by
    concentrating membrane-resident PIN2 into heterogeneous compartments.
acknowledgement: This work was supported by the National Key Research andDevelopment
  Programme of China (2017YFA0506100), theNational Natural Science Foundation of China
  (31870170 and31701168), and the Fok Ying Tung Education Foundation(161027) to XC;
  NTU startup grant (M4081533) and NIM/01/2016 (NTU, Singapore) to YM. We thank Lei
  Shi andZhongquan Lin for microscopy assistance.
article_processing_charge: No
article_type: original
author:
- first_name: M
  full_name: Ke, M
  last_name: Ke
- first_name: Z
  full_name: Ma, Z
  last_name: Ma
- first_name: D
  full_name: Wang, D
  last_name: Wang
- first_name: Y
  full_name: Sun, Y
  last_name: Sun
- first_name: C
  full_name: Wen, C
  last_name: Wen
- first_name: D
  full_name: Huang, D
  last_name: Huang
- first_name: Z
  full_name: Chen, Z
  last_name: Chen
- first_name: L
  full_name: Yang, L
  last_name: Yang
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: R
  full_name: Li, R
  last_name: Li
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Y
  full_name: Miao, Y
  last_name: Miao
- first_name: X
  full_name: Chen, X
  last_name: Chen
citation:
  ama: Ke M, Ma Z, Wang D, et al. Salicylic acid regulates PIN2 auxin transporter
    hyper-clustering and root gravitropic growth via Remorin-dependent lipid nanodomain
    organization in Arabidopsis thaliana. <i>New Phytologist</i>. 2021;229(2):963-978.
    doi:<a href="https://doi.org/10.1111/nph.16915">10.1111/nph.16915</a>
  apa: Ke, M., Ma, Z., Wang, D., Sun, Y., Wen, C., Huang, D., … Chen, X. (2021). Salicylic
    acid regulates PIN2 auxin transporter hyper-clustering and root gravitropic growth
    via Remorin-dependent lipid nanodomain organization in Arabidopsis thaliana. <i>New
    Phytologist</i>. Wiley. <a href="https://doi.org/10.1111/nph.16915">https://doi.org/10.1111/nph.16915</a>
  chicago: Ke, M, Z Ma, D Wang, Y Sun, C Wen, D Huang, Z Chen, et al. “Salicylic Acid
    Regulates PIN2 Auxin Transporter Hyper-Clustering and Root Gravitropic Growth
    via Remorin-Dependent Lipid Nanodomain Organization in Arabidopsis Thaliana.”
    <i>New Phytologist</i>. Wiley, 2021. <a href="https://doi.org/10.1111/nph.16915">https://doi.org/10.1111/nph.16915</a>.
  ieee: M. Ke <i>et al.</i>, “Salicylic acid regulates PIN2 auxin transporter hyper-clustering
    and root gravitropic growth via Remorin-dependent lipid nanodomain organization
    in Arabidopsis thaliana,” <i>New Phytologist</i>, vol. 229, no. 2. Wiley, pp.
    963–978, 2021.
  ista: Ke M, Ma Z, Wang D, Sun Y, Wen C, Huang D, Chen Z, Yang L, Tan S, Li R, Friml
    J, Miao Y, Chen X. 2021. Salicylic acid regulates PIN2 auxin transporter hyper-clustering
    and root gravitropic growth via Remorin-dependent lipid nanodomain organization
    in Arabidopsis thaliana. New Phytologist. 229(2), 963–978.
  mla: Ke, M., et al. “Salicylic Acid Regulates PIN2 Auxin Transporter Hyper-Clustering
    and Root Gravitropic Growth via Remorin-Dependent Lipid Nanodomain Organization
    in Arabidopsis Thaliana.” <i>New Phytologist</i>, vol. 229, no. 2, Wiley, 2021,
    pp. 963–78, doi:<a href="https://doi.org/10.1111/nph.16915">10.1111/nph.16915</a>.
  short: M. Ke, Z. Ma, D. Wang, Y. Sun, C. Wen, D. Huang, Z. Chen, L. Yang, S. Tan,
    R. Li, J. Friml, Y. Miao, X. Chen, New Phytologist 229 (2021) 963–978.
date_created: 2020-10-05T12:45:36Z
date_published: 2021-01-01T00:00:00Z
date_updated: 2023-09-05T16:06:24Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/nph.16915
external_id:
  isi:
  - '000573568000001'
  pmid:
  - '32901934'
file:
- access_level: open_access
  checksum: d36b6a8c6fafab66264e0d27114dae63
  content_type: application/pdf
  creator: dernst
  date_created: 2021-02-04T09:53:16Z
  date_updated: 2021-02-04T09:53:16Z
  file_id: '9085'
  file_name: 2021_NewPhytologist_Ke.pdf
  file_size: 3674502
  relation: main_file
  success: 1
file_date_updated: 2021-02-04T09:53:16Z
has_accepted_license: '1'
intvolume: '       229'
isi: 1
issue: '2'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 963-978
pmid: 1
publication: New Phytologist
publication_identifier:
  eissn:
  - 1469-8137
  issn:
  - 0028-646x
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Salicylic acid regulates PIN2 auxin transporter hyper-clustering and root gravitropic
  growth via Remorin-dependent lipid nanodomain organization in Arabidopsis thaliana
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 229
year: '2021'
...
---
_id: '9288'
abstract:
- lang: eng
  text: "• The phenylpropanoid pathway serves a central role in plant metabolism,
    providing numerous compounds involved in diverse physiological processes. Most
    carbon entering the pathway is incorporated into lignin. Although several phenylpropanoid
    pathway mutants show seedling growth arrest, the role for lignin in seedling growth
    and development is unexplored.\r\n• We use complementary pharmacological and genetic
    approaches to block CINNAMATE‐4‐HYDROXYLASE (C4H) functionality in Arabidopsis
    seedlings and a set of molecular and biochemical techniques to investigate the
    underlying phenotypes.\r\n• Blocking C4H resulted in reduced lateral rooting and
    increased adventitious rooting apically in the hypocotyl. These phenotypes coincided
    with an inhibition in auxin transport. The upstream accumulation in cis‐cinnamic
    acid was found to likely cause polar auxin transport inhibition. Conversely, a
    downstream depletion in lignin perturbed phloem‐mediated auxin transport. Restoring
    lignin deposition effectively reestablished phloem transport and, accordingly,
    auxin homeostasis.\r\n• Our results show that the accumulation of bioactive intermediates
    and depletion in lignin jointly cause the aberrant phenotypes upon blocking C4H,
    and demonstrate that proper deposition of lignin is essential for the establishment
    of auxin distribution in seedlings. Our data position the phenylpropanoid pathway
    and lignin in a new physiological framework, consolidating their importance in
    plant growth and development."
article_processing_charge: No
article_type: original
author:
- first_name: I
  full_name: El Houari, I
  last_name: El Houari
- first_name: C
  full_name: Van Beirs, C
  last_name: Van Beirs
- first_name: HE
  full_name: Arents, HE
  last_name: Arents
- first_name: Huibin
  full_name: Han, Huibin
  id: 31435098-F248-11E8-B48F-1D18A9856A87
  last_name: Han
- first_name: A
  full_name: Chanoca, A
  last_name: Chanoca
- first_name: D
  full_name: Opdenacker, D
  last_name: Opdenacker
- first_name: J
  full_name: Pollier, J
  last_name: Pollier
- first_name: V
  full_name: Storme, V
  last_name: Storme
- first_name: W
  full_name: Steenackers, W
  last_name: Steenackers
- first_name: M
  full_name: Quareshy, M
  last_name: Quareshy
- first_name: R
  full_name: Napier, R
  last_name: Napier
- first_name: T
  full_name: Beeckman, T
  last_name: Beeckman
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: B
  full_name: De Rybel, B
  last_name: De Rybel
- first_name: W
  full_name: Boerjan, W
  last_name: Boerjan
- first_name: B
  full_name: Vanholme, B
  last_name: Vanholme
citation:
  ama: El Houari I, Van Beirs C, Arents H, et al. Seedling developmental defects upon
    blocking CINNAMATE-4-HYDROXYLASE are caused by perturbations in auxin transport.
    <i>New Phytologist</i>. 2021;230(6):2275-2291. doi:<a href="https://doi.org/10.1111/nph.17349">10.1111/nph.17349</a>
  apa: El Houari, I., Van Beirs, C., Arents, H., Han, H., Chanoca, A., Opdenacker,
    D., … Vanholme, B. (2021). Seedling developmental defects upon blocking CINNAMATE-4-HYDROXYLASE
    are caused by perturbations in auxin transport. <i>New Phytologist</i>. Wiley.
    <a href="https://doi.org/10.1111/nph.17349">https://doi.org/10.1111/nph.17349</a>
  chicago: El Houari, I, C Van Beirs, HE Arents, Huibin Han, A Chanoca, D Opdenacker,
    J Pollier, et al. “Seedling Developmental Defects upon Blocking CINNAMATE-4-HYDROXYLASE
    Are Caused by Perturbations in Auxin Transport.” <i>New Phytologist</i>. Wiley,
    2021. <a href="https://doi.org/10.1111/nph.17349">https://doi.org/10.1111/nph.17349</a>.
  ieee: I. El Houari <i>et al.</i>, “Seedling developmental defects upon blocking
    CINNAMATE-4-HYDROXYLASE are caused by perturbations in auxin transport,” <i>New
    Phytologist</i>, vol. 230, no. 6. Wiley, pp. 2275–2291, 2021.
  ista: El Houari I, Van Beirs C, Arents H, Han H, Chanoca A, Opdenacker D, Pollier
    J, Storme V, Steenackers W, Quareshy M, Napier R, Beeckman T, Friml J, De Rybel
    B, Boerjan W, Vanholme B. 2021. Seedling developmental defects upon blocking CINNAMATE-4-HYDROXYLASE
    are caused by perturbations in auxin transport. New Phytologist. 230(6), 2275–2291.
  mla: El Houari, I., et al. “Seedling Developmental Defects upon Blocking CINNAMATE-4-HYDROXYLASE
    Are Caused by Perturbations in Auxin Transport.” <i>New Phytologist</i>, vol.
    230, no. 6, Wiley, 2021, pp. 2275–91, doi:<a href="https://doi.org/10.1111/nph.17349">10.1111/nph.17349</a>.
  short: I. El Houari, C. Van Beirs, H. Arents, H. Han, A. Chanoca, D. Opdenacker,
    J. Pollier, V. Storme, W. Steenackers, M. Quareshy, R. Napier, T. Beeckman, J.
    Friml, B. De Rybel, W. Boerjan, B. Vanholme, New Phytologist 230 (2021) 2275–2291.
date_created: 2021-03-26T12:09:01Z
date_published: 2021-03-17T00:00:00Z
date_updated: 2023-09-05T15:46:55Z
day: '17'
department:
- _id: JiFr
doi: 10.1111/nph.17349
external_id:
  isi:
  - '000639552400001'
  pmid:
  - '33728703'
intvolume: '       230'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://biblio.ugent.be/publication/8703799/file/8703800.pdf
month: '03'
oa: 1
oa_version: Published Version
page: 2275-2291
pmid: 1
publication: New Phytologist
publication_identifier:
  eissn:
  - 1469-8137
  issn:
  - 0028-646x
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Seedling developmental defects upon blocking CINNAMATE-4-HYDROXYLASE are caused
  by perturbations in auxin transport
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 230
year: '2021'
...
---
_id: '9656'
abstract:
- lang: eng
  text: Tropisms, growth responses to environmental stimuli such as light or gravity,
    are spectacular examples of adaptive plant development. The plant hormone auxin
    serves as a major coordinative signal. The PIN auxin exporters, through their
    dynamic polar subcellular localizations, redirect auxin fluxes in response to
    environmental stimuli and the resulting auxin gradients across organs underly
    differential cell elongation and bending. In this review, we discuss recent advances
    concerning regulations of PIN polarity during tropisms, focusing on PIN phosphorylation
    and trafficking. We also cover how environmental cues regulate PIN actions during
    tropisms, and a crucial role of auxin feedback on PIN polarity during bending
    termination. Finally, the interactions between different tropisms are reviewed
    to understand plant adaptive growth in the natural environment.
acknowledgement: We are grateful to Lukas Fiedler, Alexandra Mally (IST Austria) and
  Dr. Bartel Vanholme (VIB, Ghent) for their critical comments on the manuscript.
  We apologize to those researchers whose great work was not cited. This work is supported
  by the European Research Council under the European Union’s Horizon 2020 research
  and innovation Programme (ERC grant agreement number 742985), and the Austrian Science
  Fund (FWF, grant number I 3630-B25) to JF. HH is supported by the China Scholarship
  Council (CSC scholarship, 201506870018) and a starting grant from Jiangxi Agriculture
  University (9232308314).
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Huibin
  full_name: Han, Huibin
  id: 31435098-F248-11E8-B48F-1D18A9856A87
  last_name: Han
- first_name: Maciek
  full_name: Adamowski, Maciek
  id: 45F536D2-F248-11E8-B48F-1D18A9856A87
  last_name: Adamowski
  orcid: 0000-0001-6463-5257
- first_name: Linlin
  full_name: Qi, Linlin
  id: 44B04502-A9ED-11E9-B6FC-583AE6697425
  last_name: Qi
  orcid: 0000-0001-5187-8401
- first_name: SS
  full_name: Alotaibi, SS
  last_name: Alotaibi
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Han H, Adamowski M, Qi L, Alotaibi S, Friml J. PIN-mediated polar auxin transport
    regulations in plant tropic responses. <i>New Phytologist</i>. 2021;232(2):510-522.
    doi:<a href="https://doi.org/10.1111/nph.17617">10.1111/nph.17617</a>
  apa: Han, H., Adamowski, M., Qi, L., Alotaibi, S., &#38; Friml, J. (2021). PIN-mediated
    polar auxin transport regulations in plant tropic responses. <i>New Phytologist</i>.
    Wiley. <a href="https://doi.org/10.1111/nph.17617">https://doi.org/10.1111/nph.17617</a>
  chicago: Han, Huibin, Maciek Adamowski, Linlin Qi, SS Alotaibi, and Jiří Friml.
    “PIN-Mediated Polar Auxin Transport Regulations in Plant Tropic Responses.” <i>New
    Phytologist</i>. Wiley, 2021. <a href="https://doi.org/10.1111/nph.17617">https://doi.org/10.1111/nph.17617</a>.
  ieee: H. Han, M. Adamowski, L. Qi, S. Alotaibi, and J. Friml, “PIN-mediated polar
    auxin transport regulations in plant tropic responses,” <i>New Phytologist</i>,
    vol. 232, no. 2. Wiley, pp. 510–522, 2021.
  ista: Han H, Adamowski M, Qi L, Alotaibi S, Friml J. 2021. PIN-mediated polar auxin
    transport regulations in plant tropic responses. New Phytologist. 232(2), 510–522.
  mla: Han, Huibin, et al. “PIN-Mediated Polar Auxin Transport Regulations in Plant
    Tropic Responses.” <i>New Phytologist</i>, vol. 232, no. 2, Wiley, 2021, pp. 510–22,
    doi:<a href="https://doi.org/10.1111/nph.17617">10.1111/nph.17617</a>.
  short: H. Han, M. Adamowski, L. Qi, S. Alotaibi, J. Friml, New Phytologist 232 (2021)
    510–522.
date_created: 2021-07-14T15:29:14Z
date_published: 2021-10-01T00:00:00Z
date_updated: 2023-08-10T14:02:41Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/nph.17617
ec_funded: 1
external_id:
  isi:
  - '000680587100001'
  pmid:
  - '34254313'
file:
- access_level: open_access
  checksum: 6422a6eb329b52d96279daaee0fcf189
  content_type: application/pdf
  creator: kschuh
  date_created: 2021-10-07T13:42:47Z
  date_updated: 2021-10-07T13:42:47Z
  file_id: '10105'
  file_name: 2021_NewPhytologist_Han.pdf
  file_size: 1939800
  relation: main_file
  success: 1
file_date_updated: 2021-10-07T13:42:47Z
has_accepted_license: '1'
intvolume: '       232'
isi: 1
issue: '2'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 510-522
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
publication: New Phytologist
publication_identifier:
  eissn:
  - 1469-8137
  issn:
  - 0028-646x
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: PIN-mediated polar auxin transport regulations in plant tropic responses
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 232
year: '2021'
...
---
_id: '6997'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Yuzhou
  full_name: Zhang, Yuzhou
  id: 3B6137F2-F248-11E8-B48F-1D18A9856A87
  last_name: Zhang
  orcid: 0000-0003-2627-6956
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Zhang Y, Friml J. Auxin guides roots to avoid obstacles during gravitropic
    growth. <i>New Phytologist</i>. 2020;225(3):1049-1052. doi:<a href="https://doi.org/10.1111/nph.16203">10.1111/nph.16203</a>
  apa: Zhang, Y., &#38; Friml, J. (2020). Auxin guides roots to avoid obstacles during
    gravitropic growth. <i>New Phytologist</i>. Wiley. <a href="https://doi.org/10.1111/nph.16203">https://doi.org/10.1111/nph.16203</a>
  chicago: Zhang, Yuzhou, and Jiří Friml. “Auxin Guides Roots to Avoid Obstacles during
    Gravitropic Growth.” <i>New Phytologist</i>. Wiley, 2020. <a href="https://doi.org/10.1111/nph.16203">https://doi.org/10.1111/nph.16203</a>.
  ieee: Y. Zhang and J. Friml, “Auxin guides roots to avoid obstacles during gravitropic
    growth,” <i>New Phytologist</i>, vol. 225, no. 3. Wiley, pp. 1049–1052, 2020.
  ista: Zhang Y, Friml J. 2020. Auxin guides roots to avoid obstacles during gravitropic
    growth. New Phytologist. 225(3), 1049–1052.
  mla: Zhang, Yuzhou, and Jiří Friml. “Auxin Guides Roots to Avoid Obstacles during
    Gravitropic Growth.” <i>New Phytologist</i>, vol. 225, no. 3, Wiley, 2020, pp.
    1049–52, doi:<a href="https://doi.org/10.1111/nph.16203">10.1111/nph.16203</a>.
  short: Y. Zhang, J. Friml, New Phytologist 225 (2020) 1049–1052.
date_created: 2019-11-12T11:41:32Z
date_published: 2020-02-01T00:00:00Z
date_updated: 2023-08-17T14:01:49Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/nph.16203
ec_funded: 1
external_id:
  isi:
  - '000489638800001'
  pmid:
  - '31603260'
file:
- access_level: open_access
  checksum: cd42ffdb381fd52812b9583d4d407139
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-18T16:42:48Z
  date_updated: 2020-11-18T16:42:48Z
  file_id: '8772'
  file_name: 2020_NewPhytologist_Zhang.pdf
  file_size: 717345
  relation: main_file
  success: 1
file_date_updated: 2020-11-18T16:42:48Z
has_accepted_license: '1'
intvolume: '       225'
isi: 1
issue: '3'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 1049-1052
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: New Phytologist
publication_identifier:
  eissn:
  - 1469-8137
  issn:
  - 0028-646x
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Auxin guides roots to avoid obstacles during gravitropic growth
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 225
year: '2020'
...
---
_id: '7500'
abstract:
- lang: eng
  text: "Plant survival depends on vascular tissues, which originate in a self‐organizing
    manner as strands of cells co‐directionally transporting the plant hormone auxin.
    The latter phenomenon (also known as auxin canalization) is classically hypothesized
    to be regulated by auxin itself via the effect of this hormone on the polarity
    of its own intercellular transport. Correlative observations supported this concept,
    but molecular insights remain limited.\r\nIn the current study, we established
    an experimental system based on the model Arabidopsis thaliana, which exhibits
    auxin transport channels and formation of vasculature strands in response to local
    auxin application.\r\nOur methodology permits the genetic analysis of auxin canalization
    under controllable experimental conditions. By utilizing this opportunity, we
    confirmed the dependence of auxin canalization on a PIN‐dependent auxin transport
    and nuclear, TIR1/AFB‐mediated auxin signaling. We also show that leaf venation
    and auxin‐mediated PIN repolarization in the root require TIR1/AFB signaling.\r\nFurther
    studies based on this experimental system are likely to yield better understanding
    of the mechanisms underlying auxin transport polarization in other developmental
    contexts."
acknowledgement: We thank Mark Estelle, José M. Alonso and the Arabidopsis Stock Centre
  for providing seeds. We acknowledge the core facility CELLIM of CEITEC supported
  by the MEYS CR (LM2015062 Czech‐BioImaging) and Plant Sciences Core Facility of
  CEITEC Masaryk University for help in generating essential data. This project received
  funding from the European Research Council (ERC) under the European Union's Horizon
  2020 research and innovation program (grant agreement no. 742985) and the Czech
  Science Foundation GAČR (GA13‐40637S and GA18‐26981S) to JF. JH is the recipient
  of a DOC Fellowship of the Austrian Academy of Sciences at the Institute of Science
  and Technology. The authors declare no competing interests.
article_processing_charge: No
article_type: original
author:
- first_name: E
  full_name: Mazur, E
  last_name: Mazur
- first_name: Ivan
  full_name: Kulik, Ivan
  id: F0AB3FCE-02D1-11E9-BD0E-99399A5D3DEB
  last_name: Kulik
- first_name: Jakub
  full_name: Hajny, Jakub
  id: 4800CC20-F248-11E8-B48F-1D18A9856A87
  last_name: Hajny
  orcid: 0000-0003-2140-7195
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Mazur E, Kulik I, Hajny J, Friml J. Auxin canalization and vascular tissue
    formation by TIR1/AFB-mediated auxin signaling in arabidopsis. <i>New Phytologist</i>.
    2020;226(5):1375-1383. doi:<a href="https://doi.org/10.1111/nph.16446">10.1111/nph.16446</a>
  apa: Mazur, E., Kulik, I., Hajny, J., &#38; Friml, J. (2020). Auxin canalization
    and vascular tissue formation by TIR1/AFB-mediated auxin signaling in arabidopsis.
    <i>New Phytologist</i>. Wiley. <a href="https://doi.org/10.1111/nph.16446">https://doi.org/10.1111/nph.16446</a>
  chicago: Mazur, E, Ivan Kulik, Jakub Hajny, and Jiří Friml. “Auxin Canalization
    and Vascular Tissue Formation by TIR1/AFB-Mediated Auxin Signaling in Arabidopsis.”
    <i>New Phytologist</i>. Wiley, 2020. <a href="https://doi.org/10.1111/nph.16446">https://doi.org/10.1111/nph.16446</a>.
  ieee: E. Mazur, I. Kulik, J. Hajny, and J. Friml, “Auxin canalization and vascular
    tissue formation by TIR1/AFB-mediated auxin signaling in arabidopsis,” <i>New
    Phytologist</i>, vol. 226, no. 5. Wiley, pp. 1375–1383, 2020.
  ista: Mazur E, Kulik I, Hajny J, Friml J. 2020. Auxin canalization and vascular
    tissue formation by TIR1/AFB-mediated auxin signaling in arabidopsis. New Phytologist.
    226(5), 1375–1383.
  mla: Mazur, E., et al. “Auxin Canalization and Vascular Tissue Formation by TIR1/AFB-Mediated
    Auxin Signaling in Arabidopsis.” <i>New Phytologist</i>, vol. 226, no. 5, Wiley,
    2020, pp. 1375–83, doi:<a href="https://doi.org/10.1111/nph.16446">10.1111/nph.16446</a>.
  short: E. Mazur, I. Kulik, J. Hajny, J. Friml, New Phytologist 226 (2020) 1375–1383.
date_created: 2020-02-18T10:03:47Z
date_published: 2020-06-01T00:00:00Z
date_updated: 2024-03-25T23:30:21Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/nph.16446
ec_funded: 1
external_id:
  isi:
  - '000514939700001'
  pmid:
  - '31971254'
file:
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  date_updated: 2020-11-20T09:32:10Z
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file_date_updated: 2020-11-20T09:32:10Z
has_accepted_license: '1'
intvolume: '       226'
isi: 1
issue: '5'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 1375-1383
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 2699E3D2-B435-11E9-9278-68D0E5697425
  grant_number: '25239'
  name: Cell surface receptor complexes for PIN polarity and auxin-mediated development
publication: New Phytologist
publication_identifier:
  eissn:
  - 1469-8137
  issn:
  - 0028-646x
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
  record:
  - id: '8822'
    relation: dissertation_contains
    status: public
status: public
title: Auxin canalization and vascular tissue formation by TIR1/AFB-mediated auxin
  signaling in arabidopsis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 226
year: '2020'
...
---
_id: '6504'
abstract:
- lang: eng
  text: "Root gravitropism is one of the most important processes allowing plant adaptation
    to the land environment. Auxin plays a central role in mediating root gravitropism,
    but how auxin contributes to gravitational perception and the subsequent response
    is still unclear.\r\n\r\nHere, we showed that the local auxin maximum/gradient
    within the root apex, which is generated by the PIN directional auxin transporters,
    regulates the expression of three key starch granule synthesis genes, SS4, PGM
    and ADG1, which in turn influence the accumulation of starch granules that serve
    as a statolith perceiving gravity.\r\n\r\nMoreover, using the cvxIAA‐ccvTIR1 system,
    we also showed that TIR1‐mediated auxin signaling is required for starch granule
    formation and gravitropic response within root tips. In addition, axr3 mutants
    showed reduced auxin‐mediated starch granule accumulation and disruption of gravitropism
    within the root apex.\r\n\r\nOur results indicate that auxin‐mediated statolith
    production relies on the TIR1/AFB‐AXR3‐mediated auxin signaling pathway. In summary,
    we propose a dual role for auxin in gravitropism: the regulation of both gravity
    perception and response."
article_processing_charge: No
article_type: original
author:
- first_name: Yuzhou
  full_name: Zhang, Yuzhou
  id: 3B6137F2-F248-11E8-B48F-1D18A9856A87
  last_name: Zhang
  orcid: 0000-0003-2627-6956
- first_name: P
  full_name: He, P
  last_name: He
- first_name: X
  full_name: Ma, X
  last_name: Ma
- first_name: Z
  full_name: Yang, Z
  last_name: Yang
- first_name: C
  full_name: Pang, C
  last_name: Pang
- first_name: J
  full_name: Yu, J
  last_name: Yu
- first_name: G
  full_name: Wang, G
  last_name: Wang
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: G
  full_name: Xiao, G
  last_name: Xiao
citation:
  ama: Zhang Y, He P, Ma X, et al. Auxin-mediated statolith production for root gravitropism.
    <i>New Phytologist</i>. 2019;224(2):761-774. doi:<a href="https://doi.org/10.1111/nph.15932">10.1111/nph.15932</a>
  apa: Zhang, Y., He, P., Ma, X., Yang, Z., Pang, C., Yu, J., … Xiao, G. (2019). Auxin-mediated
    statolith production for root gravitropism. <i>New Phytologist</i>. Wiley. <a
    href="https://doi.org/10.1111/nph.15932">https://doi.org/10.1111/nph.15932</a>
  chicago: Zhang, Yuzhou, P He, X Ma, Z Yang, C Pang, J Yu, G Wang, Jiří Friml, and
    G Xiao. “Auxin-Mediated Statolith Production for Root Gravitropism.” <i>New Phytologist</i>.
    Wiley, 2019. <a href="https://doi.org/10.1111/nph.15932">https://doi.org/10.1111/nph.15932</a>.
  ieee: Y. Zhang <i>et al.</i>, “Auxin-mediated statolith production for root gravitropism,”
    <i>New Phytologist</i>, vol. 224, no. 2. Wiley, pp. 761–774, 2019.
  ista: Zhang Y, He P, Ma X, Yang Z, Pang C, Yu J, Wang G, Friml J, Xiao G. 2019.
    Auxin-mediated statolith production for root gravitropism. New Phytologist. 224(2),
    761–774.
  mla: Zhang, Yuzhou, et al. “Auxin-Mediated Statolith Production for Root Gravitropism.”
    <i>New Phytologist</i>, vol. 224, no. 2, Wiley, 2019, pp. 761–74, doi:<a href="https://doi.org/10.1111/nph.15932">10.1111/nph.15932</a>.
  short: Y. Zhang, P. He, X. Ma, Z. Yang, C. Pang, J. Yu, G. Wang, J. Friml, G. Xiao,
    New Phytologist 224 (2019) 761–774.
date_created: 2019-05-28T14:33:26Z
date_published: 2019-10-01T00:00:00Z
date_updated: 2023-08-28T08:40:13Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/nph.15932
external_id:
  isi:
  - '000487184200024'
  pmid:
  - '31111487'
file:
- access_level: open_access
  checksum: 6488243334538f5c39099a701cbf76b9
  content_type: application/pdf
  creator: dernst
  date_created: 2020-10-14T08:59:33Z
  date_updated: 2020-10-14T08:59:33Z
  file_id: '8661'
  file_name: 2019_NewPhytologist_Zhang_accepted.pdf
  file_size: 1099061
  relation: main_file
  success: 1
file_date_updated: 2020-10-14T08:59:33Z
has_accepted_license: '1'
intvolume: '       224'
isi: 1
issue: '2'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Submitted Version
page: 761-774
pmid: 1
publication: New Phytologist
publication_identifier:
  eissn:
  - 1469-8137
  issn:
  - 0028-646x
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Auxin-mediated statolith production for root gravitropism
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 224
year: '2019'
...
