[{"oa":1,"publication_identifier":{"issn":["0022-0957"],"eissn":["1460-2431"]},"type":"journal_article","date_published":"2023-12-01T00:00:00Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"access_level":"open_access","success":1,"relation":"main_file","file_id":"14724","creator":"dernst","date_created":"2024-01-02T09:23:57Z","checksum":"f66fb960fd791dea53fd0e087f2fbbe8","file_size":425194,"date_updated":"2024-01-02T09:23:57Z","content_type":"application/pdf","file_name":"2023_JourExperimentalBotany_DelBianco.pdf"}],"month":"12","oa_version":"Published Version","has_accepted_license":"1","publication":"Journal of Experimental Botany","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Amid the delays due to the global pandemic, in early October 2022, the auxin community gathered in the idyllic peninsula of Cavtat, Croatia. More than 170 scientists from across the world converged to discuss the latest advancements in fundamental and applied research in the field. The topics, from signalling and transport to plant architecture and response to the environment, show how auxin research must bridge from the molecular realm to macroscopic developmental responses. This is mirrored in this collection of reviews, contributed by participants of the Auxin 2022 meeting."}],"day":"01","doi":"10.1093/jxb/erad420","external_id":{"pmid":["38038239"]},"year":"2023","citation":{"ista":"Del Bianco M, Friml J, Strader L, Kepinski S. 2023. Auxin research: Creating tools for a greener future. Journal of Experimental Botany. 74(22), 6889–6892.","mla":"Del Bianco, Marta, et al. “Auxin Research: Creating Tools for a Greener Future.” <i>Journal of Experimental Botany</i>, vol. 74, no. 22, Oxford University Press, 2023, pp. 6889–92, doi:<a href=\"https://doi.org/10.1093/jxb/erad420\">10.1093/jxb/erad420</a>.","short":"M. Del Bianco, J. Friml, L. Strader, S. Kepinski, Journal of Experimental Botany 74 (2023) 6889–6892.","chicago":"Del Bianco, Marta, Jiří Friml, Lucia Strader, and Stefan Kepinski. “Auxin Research: Creating Tools for a Greener Future.” <i>Journal of Experimental Botany</i>. Oxford University Press, 2023. <a href=\"https://doi.org/10.1093/jxb/erad420\">https://doi.org/10.1093/jxb/erad420</a>.","ieee":"M. Del Bianco, J. Friml, L. Strader, and S. Kepinski, “Auxin research: Creating tools for a greener future,” <i>Journal of Experimental Botany</i>, vol. 74, no. 22. Oxford University Press, pp. 6889–6892, 2023.","apa":"Del Bianco, M., Friml, J., Strader, L., &#38; Kepinski, S. (2023). Auxin research: Creating tools for a greener future. <i>Journal of Experimental Botany</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/jxb/erad420\">https://doi.org/10.1093/jxb/erad420</a>","ama":"Del Bianco M, Friml J, Strader L, Kepinski S. Auxin research: Creating tools for a greener future. <i>Journal of Experimental Botany</i>. 2023;74(22):6889-6892. doi:<a href=\"https://doi.org/10.1093/jxb/erad420\">10.1093/jxb/erad420</a>"},"date_updated":"2024-01-02T09:29:24Z","ddc":["580"],"volume":74,"intvolume":"        74","title":"Auxin research: Creating tools for a greener future","date_created":"2023-12-24T23:00:53Z","department":[{"_id":"JiFr"}],"article_processing_charge":"Yes (in subscription journal)","publication_status":"published","issue":"22","author":[{"first_name":"Marta","last_name":"Del Bianco","full_name":"Del Bianco, Marta"},{"last_name":"Friml","first_name":"Jiří","full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Lucia","last_name":"Strader","full_name":"Strader, Lucia"},{"full_name":"Kepinski, Stefan","first_name":"Stefan","last_name":"Kepinski"}],"scopus_import":"1","_id":"14709","pmid":1,"article_type":"original","publisher":"Oxford University Press","file_date_updated":"2024-01-02T09:23:57Z","quality_controlled":"1","page":"6889-6892"},{"author":[{"full_name":"Wang, R","last_name":"Wang","first_name":"R"},{"full_name":"Himschoot, E","last_name":"Himschoot","first_name":"E"},{"last_name":"Grenzi","first_name":"M","full_name":"Grenzi, M"},{"full_name":"Chen, J","first_name":"J","last_name":"Chen"},{"full_name":"Safi, A","last_name":"Safi","first_name":"A"},{"full_name":"Krebs, M","last_name":"Krebs","first_name":"M"},{"full_name":"Schumacher, K","first_name":"K","last_name":"Schumacher"},{"full_name":"Nowack, MK","first_name":"MK","last_name":"Nowack"},{"first_name":"W","last_name":"Moeder","full_name":"Moeder, W"},{"full_name":"Yoshioka, K","last_name":"Yoshioka","first_name":"K"},{"last_name":"Van Damme","first_name":"D","full_name":"Van Damme, D"},{"last_name":"De Smet","first_name":"I","full_name":"De Smet, I"},{"full_name":"Geelen, D","first_name":"D","last_name":"Geelen"},{"full_name":"Beeckman, T","last_name":"Beeckman","first_name":"T"},{"full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596","last_name":"Friml","first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Costa","first_name":"A","full_name":"Costa, A"},{"first_name":"S","last_name":"Vanneste","full_name":"Vanneste, S"}],"issue":"8","_id":"10717","pmid":1,"scopus_import":"1","title":"Auxin analog-induced Ca2+ signaling is independent of inhibition of endosomal aggregation in Arabidopsis roots","intvolume":"        73","publication_status":"published","date_created":"2022-02-03T09:19:01Z","department":[{"_id":"JiFr"}],"article_processing_charge":"No","ec_funded":1,"quality_controlled":"1","article_type":"original","publisher":"Oxford Academic","isi":1,"external_id":{"pmid":["35085386"],"isi":["000764220900001"]},"date_updated":"2023-08-02T14:07:58Z","citation":{"ista":"Wang R, Himschoot E, Grenzi M, Chen J, Safi A, Krebs M, Schumacher K, Nowack M, Moeder W, Yoshioka K, Van Damme D, De Smet I, Geelen D, Beeckman T, Friml J, Costa A, Vanneste S. 2022. Auxin analog-induced Ca2+ signaling is independent of inhibition of endosomal aggregation in Arabidopsis roots. Journal of Experimental Botany. 73(8), erac019.","short":"R. Wang, E. Himschoot, M. Grenzi, J. Chen, A. Safi, M. Krebs, K. Schumacher, M. Nowack, W. Moeder, K. Yoshioka, D. Van Damme, I. De Smet, D. Geelen, T. Beeckman, J. Friml, A. Costa, S. Vanneste, Journal of Experimental Botany 73 (2022).","mla":"Wang, R., et al. “Auxin Analog-Induced Ca2+ Signaling Is Independent of Inhibition of Endosomal Aggregation in Arabidopsis Roots.” <i>Journal of Experimental Botany</i>, vol. 73, no. 8, erac019, Oxford Academic, 2022, doi:<a href=\"https://doi.org/10.1093/jxb/erac019\">10.1093/jxb/erac019</a>.","ieee":"R. Wang <i>et al.</i>, “Auxin analog-induced Ca2+ signaling is independent of inhibition of endosomal aggregation in Arabidopsis roots,” <i>Journal of Experimental Botany</i>, vol. 73, no. 8. Oxford Academic, 2022.","chicago":"Wang, R, E Himschoot, M Grenzi, J Chen, A Safi, M Krebs, K Schumacher, et al. “Auxin Analog-Induced Ca2+ Signaling Is Independent of Inhibition of Endosomal Aggregation in Arabidopsis Roots.” <i>Journal of Experimental Botany</i>. Oxford Academic, 2022. <a href=\"https://doi.org/10.1093/jxb/erac019\">https://doi.org/10.1093/jxb/erac019</a>.","apa":"Wang, R., Himschoot, E., Grenzi, M., Chen, J., Safi, A., Krebs, M., … Vanneste, S. (2022). Auxin analog-induced Ca2+ signaling is independent of inhibition of endosomal aggregation in Arabidopsis roots. <i>Journal of Experimental Botany</i>. Oxford Academic. <a href=\"https://doi.org/10.1093/jxb/erac019\">https://doi.org/10.1093/jxb/erac019</a>","ama":"Wang R, Himschoot E, Grenzi M, et al. Auxin analog-induced Ca2+ signaling is independent of inhibition of endosomal aggregation in Arabidopsis roots. <i>Journal of Experimental Botany</i>. 2022;73(8). doi:<a href=\"https://doi.org/10.1093/jxb/erac019\">10.1093/jxb/erac019</a>"},"year":"2022","abstract":[{"lang":"eng","text":"Much of what we know about the role of auxin in plant development derives from exogenous manipulations of auxin distribution and signaling, using inhibitors, auxins and auxin analogs. In this context, synthetic auxin analogs, such as 1-Naphtalene Acetic Acid (1-NAA), are often favored over the endogenous auxin indole-3-acetic acid (IAA), in part due to their higher stability. While such auxin analogs have proven to be instrumental to reveal the various faces of auxin, they display in some cases distinct bioactivities compared to IAA. Here, we focused on the effect of auxin analogs on the accumulation of PIN proteins in Brefeldin A-sensitive endosomal aggregations (BFA bodies), and the correlation with the ability to elicit Ca 2+ responses. For a set of commonly used auxin analogs, we evaluated if auxin-analog induced Ca 2+ signaling inhibits PIN accumulation. Not all auxin analogs elicited a Ca 2+ response, and their differential ability to elicit Ca 2+ responses correlated partially with their ability to inhibit BFA-body formation. However, in tir1/afb and cngc14, 1-NAA-induced Ca 2+ signaling was strongly impaired, yet 1-NAA still could inhibit PIN accumulation in BFA bodies. This demonstrates that TIR1/AFB-CNGC14-dependent Ca 2+ signaling does not inhibit BFA body formation in Arabidopsis roots."}],"doi":"10.1093/jxb/erac019","day":"18","volume":73,"acknowledgement":"We thank Joerg Kudla (WWU Munster, Germany), Petra Dietrich (F.A. University of Erlangen-Nurnberg, Germany) for sharing published materials, and NASC for providing seeds. We thank Veronique Storme for help with the statistical analyses. Part of the imaging analysis was carried out at NOLIMITS, an advanced imaging facility established by the University of Milan.\r\nThis work was supported by grants of the China Scholarship Council (CSC) to RW and JC; Fonds Wetenschappelijk Onderzoek (FWO) to TB and (G002220N) SV; the special research fund of Ghent University to EH; the Deutsche Forschungsgemeinschaft (DFG) through Grants within FOR964 (MK and KS); Piano di Sviluppo di Ateneo 2019 (University of Milan) to AC; the European Research Council (ERC) T-Rex project 682436 to DVD; the ERC ETAP project 742985 to JF, and by a PhD fellowship from the University of Milan to MG.","publication":"Journal of Experimental Botany","month":"04","article_number":"erac019","oa_version":"Submitted Version","project":[{"call_identifier":"H2020","_id":"261099A6-B435-11E9-9278-68D0E5697425","name":"Tracing Evolution of Auxin Transport and Polarity in Plants","grant_number":"742985"}],"language":[{"iso":"eng"}],"date_published":"2022-04-18T00:00:00Z","type":"journal_article","oa":1,"publication_identifier":{"eissn":["1460-2431"],"issn":["0022-0957"]},"status":"public","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","main_file_link":[{"url":"https://biblio.ugent.be/publication/8738721","open_access":"1"}]},{"intvolume":"        72","title":"Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors","department":[{"_id":"XiFe"}],"date_created":"2023-01-16T09:14:35Z","article_processing_charge":"No","publication_status":"published","issue":"22","author":[{"last_name":"Ding","first_name":"Pingtao","full_name":"Ding, Pingtao"},{"full_name":"Sakai, Toshiyuki","first_name":"Toshiyuki","last_name":"Sakai"},{"first_name":"Ram","last_name":"Krishna Shrestha","full_name":"Krishna Shrestha, Ram"},{"full_name":"Manosalva Perez, Nicolas","last_name":"Manosalva Perez","first_name":"Nicolas"},{"full_name":"Guo, Wenbin","last_name":"Guo","first_name":"Wenbin"},{"full_name":"Ngou, Bruno Pok Man","first_name":"Bruno Pok Man","last_name":"Ngou"},{"last_name":"He","first_name":"Shengbo","full_name":"He, Shengbo"},{"first_name":"Chang","last_name":"Liu","full_name":"Liu, Chang"},{"id":"e0164712-22ee-11ed-b12a-d80fcdf35958","last_name":"Feng","first_name":"Xiaoqi","full_name":"Feng, Xiaoqi","orcid":"0000-0002-4008-1234"},{"last_name":"Zhang","first_name":"Runxuan","full_name":"Zhang, Runxuan"},{"full_name":"Vandepoele, Klaas","first_name":"Klaas","last_name":"Vandepoele"},{"full_name":"MacLean, Dan","first_name":"Dan","last_name":"MacLean"},{"first_name":"Jonathan D G","last_name":"Jones","full_name":"Jones, Jonathan D G"}],"scopus_import":"1","pmid":1,"_id":"12186","article_type":"original","publisher":"Oxford University Press","quality_controlled":"1","page":"7927-7941","abstract":[{"text":"Activation of cell-surface and intracellular receptor-mediated immunity results in rapid transcriptional reprogramming that underpins disease resistance. However, the mechanisms by which co-activation of both immune systems lead to transcriptional changes are not clear. Here, we combine RNA-seq and ATAC-seq to define changes in gene expression and chromatin accessibility. Activation of cell-surface or intracellular receptor-mediated immunity, or both, increases chromatin accessibility at induced defence genes. Analysis of ATAC-seq and RNA-seq data combined with publicly available information on transcription factor DNA-binding motifs enabled comparison of individual gene regulatory networks activated by cell-surface or intracellular receptor-mediated immunity, or by both. These results and analyses reveal overlapping and conserved transcriptional regulatory mechanisms between the two immune systems.","lang":"eng"}],"day":"13","doi":"10.1093/jxb/erab373","external_id":{"pmid":["34387350"]},"year":"2021","citation":{"ista":"Ding P, Sakai T, Krishna Shrestha R, Manosalva Perez N, Guo W, Ngou BPM, He S, Liu C, Feng X, Zhang R, Vandepoele K, MacLean D, Jones JDG. 2021. Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors. Journal of Experimental Botany. 72(22), 7927–7941.","mla":"Ding, Pingtao, et al. “Chromatin Accessibility Landscapes Activated by Cell-Surface and Intracellular Immune Receptors.” <i>Journal of Experimental Botany</i>, vol. 72, no. 22, Oxford University Press, 2021, pp. 7927–41, doi:<a href=\"https://doi.org/10.1093/jxb/erab373\">10.1093/jxb/erab373</a>.","short":"P. Ding, T. Sakai, R. Krishna Shrestha, N. Manosalva Perez, W. Guo, B.P.M. Ngou, S. He, C. Liu, X. Feng, R. Zhang, K. Vandepoele, D. MacLean, J.D.G. Jones, Journal of Experimental Botany 72 (2021) 7927–7941.","ieee":"P. Ding <i>et al.</i>, “Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors,” <i>Journal of Experimental Botany</i>, vol. 72, no. 22. Oxford University Press, pp. 7927–7941, 2021.","chicago":"Ding, Pingtao, Toshiyuki Sakai, Ram Krishna Shrestha, Nicolas Manosalva Perez, Wenbin Guo, Bruno Pok Man Ngou, Shengbo He, et al. “Chromatin Accessibility Landscapes Activated by Cell-Surface and Intracellular Immune Receptors.” <i>Journal of Experimental Botany</i>. Oxford University Press, 2021. <a href=\"https://doi.org/10.1093/jxb/erab373\">https://doi.org/10.1093/jxb/erab373</a>.","apa":"Ding, P., Sakai, T., Krishna Shrestha, R., Manosalva Perez, N., Guo, W., Ngou, B. P. M., … Jones, J. D. G. (2021). Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors. <i>Journal of Experimental Botany</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/jxb/erab373\">https://doi.org/10.1093/jxb/erab373</a>","ama":"Ding P, Sakai T, Krishna Shrestha R, et al. Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors. <i>Journal of Experimental Botany</i>. 2021;72(22):7927-7941. doi:<a href=\"https://doi.org/10.1093/jxb/erab373\">10.1093/jxb/erab373</a>"},"date_updated":"2023-05-08T11:01:18Z","extern":"1","volume":72,"acknowledgement":"We thank the Gatsby Foundation (UK) for funding to the JDGJ laboratory. PD acknowledges support from the European Union’s Horizon 2020 Research and Innovation Program under Marie Skłodowska Curie Actions (grant agreement: 656243) and a Future Leader Fellowship from the Biotechnology and Biological Sciences Research Council (BBSRC) (grant agreement: BB/R012172/1). TS, RKS, DM, and JDGJ were supported by the Gatsby Foundation funding to the\r\nSainsbury Laboratory. NMP and KV were supported by a BOF grant from Ghent University (grant agreement: BOF24Y2019001901). WG and RZ were supported by the Scottish Government Rural and Environment Science and Analytical Services division (RESAS), and RZ also acknowledges the support from a BBSRC Bioinformatics and Biological Resources Fund (grant agreement: BB/S020160/1).BPMN was supported by the Norwich Research Park (NRP) Biosciences Doctoral Training Partnership (DTP) funded by the BBSRC (grant agreement: BB/M011216/1). SH and XF were supported by a BBSRC Responsive Mode grant (grant agreement: BB/S009620/1) and a European Research Council Starting grant ‘SexMeth’ (grant agreement: 804981). CL was supported by Deutsche Forschungsgemeinschaft (grant agreement: LI 2862/4). ","month":"08","oa_version":"None","publication":"Journal of Experimental Botany","keyword":["Plant Science","Physiology"],"language":[{"iso":"eng"}],"publication_identifier":{"issn":["0022-0957","1460-2431"]},"type":"journal_article","date_published":"2021-08-13T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public"},{"language":[{"iso":"eng"}],"oa_version":"Submitted Version","month":"07","publication":"Journal of Experimental Botany","main_file_link":[{"url":"https://hal.inrae.fr/hal-02619371","open_access":"1"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","status":"public","publication_identifier":{"eissn":["1460-2431"],"issn":["0022-0957"]},"oa":1,"type":"journal_article","date_published":"2020-07-25T00:00:00Z","publisher":"Oxford University Press","article_type":"original","quality_controlled":"1","page":"4480-4494","department":[{"_id":"EvBe"}],"date_created":"2020-06-08T10:10:28Z","article_processing_charge":"No","publication_status":"published","intvolume":"        71","title":"The Arabidopsis NRT1.1 transceptor coordinately controls auxin biosynthesis and transport to regulate root branching in response to nitrate","_id":"7948","pmid":1,"issue":"15","author":[{"full_name":"Maghiaoui, A","last_name":"Maghiaoui","first_name":"A"},{"last_name":"Bouguyon","first_name":"E","full_name":"Bouguyon, E"},{"id":"33A3C818-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1923-2410","full_name":"Cuesta, Candela","first_name":"Candela","last_name":"Cuesta"},{"first_name":"F","last_name":"Perrine-Walker","full_name":"Perrine-Walker, F"},{"full_name":"Alcon, C","first_name":"C","last_name":"Alcon"},{"first_name":"G","last_name":"Krouk","full_name":"Krouk, G"},{"id":"38F4F166-F248-11E8-B48F-1D18A9856A87","full_name":"Benková, Eva","orcid":"0000-0002-8510-9739","last_name":"Benková","first_name":"Eva"},{"first_name":"P","last_name":"Nacry","full_name":"Nacry, P"},{"full_name":"Gojon, A","first_name":"A","last_name":"Gojon"},{"last_name":"Bach","first_name":"L","full_name":"Bach, L"}],"volume":71,"day":"25","doi":"10.1093/jxb/eraa242","abstract":[{"text":"In agricultural systems, nitrate is the main source of nitrogen available for plants. Besides its role as a nutrient, nitrate has been shown to act as a signal molecule for plant growth, development and stress responses. In Arabidopsis, the NRT1.1 nitrate transceptor represses lateral root (LR) development at low nitrate availability by promoting auxin basipetal transport out of the LR primordia (LRPs). In addition, our present study shows that NRT1.1 acts as a negative regulator of the TAR2 auxin biosynthetic gene expression in the root stele. This is expected to repress local auxin biosynthesis and thus to reduce acropetal auxin supply to the LRPs. Moreover, NRT1.1 also negatively affects expression of the LAX3 auxin influx carrier, thus preventing cell wall remodeling required for overlying tissues separation during LRP emergence. Both NRT1.1-mediated repression of TAR2 and LAX3 are suppressed at high nitrate availability, resulting in the nitrate induction of TAR2 and LAX3 expression that is required for optimal stimulation of LR development by nitrate. Altogether, our results indicate that the NRT1.1 transceptor coordinately controls several crucial auxin-associated processes required for LRP development, and as a consequence that NRT1.1 plays a much more integrated role than previously anticipated in regulating the nitrate response of root system architecture.","lang":"eng"}],"year":"2020","citation":{"chicago":"Maghiaoui, A, E Bouguyon, Candela Cuesta, F Perrine-Walker, C Alcon, G Krouk, Eva Benková, P Nacry, A Gojon, and L Bach. “The Arabidopsis NRT1.1 Transceptor Coordinately Controls Auxin Biosynthesis and Transport to Regulate Root Branching in Response to Nitrate.” <i>Journal of Experimental Botany</i>. Oxford University Press, 2020. <a href=\"https://doi.org/10.1093/jxb/eraa242\">https://doi.org/10.1093/jxb/eraa242</a>.","ieee":"A. Maghiaoui <i>et al.</i>, “The Arabidopsis NRT1.1 transceptor coordinately controls auxin biosynthesis and transport to regulate root branching in response to nitrate,” <i>Journal of Experimental Botany</i>, vol. 71, no. 15. Oxford University Press, pp. 4480–4494, 2020.","ama":"Maghiaoui A, Bouguyon E, Cuesta C, et al. The Arabidopsis NRT1.1 transceptor coordinately controls auxin biosynthesis and transport to regulate root branching in response to nitrate. <i>Journal of Experimental Botany</i>. 2020;71(15):4480-4494. doi:<a href=\"https://doi.org/10.1093/jxb/eraa242\">10.1093/jxb/eraa242</a>","apa":"Maghiaoui, A., Bouguyon, E., Cuesta, C., Perrine-Walker, F., Alcon, C., Krouk, G., … Bach, L. (2020). The Arabidopsis NRT1.1 transceptor coordinately controls auxin biosynthesis and transport to regulate root branching in response to nitrate. <i>Journal of Experimental Botany</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/jxb/eraa242\">https://doi.org/10.1093/jxb/eraa242</a>","ista":"Maghiaoui A, Bouguyon E, Cuesta C, Perrine-Walker F, Alcon C, Krouk G, Benková E, Nacry P, Gojon A, Bach L. 2020. The Arabidopsis NRT1.1 transceptor coordinately controls auxin biosynthesis and transport to regulate root branching in response to nitrate. Journal of Experimental Botany. 71(15), 4480–4494.","mla":"Maghiaoui, A., et al. “The Arabidopsis NRT1.1 Transceptor Coordinately Controls Auxin Biosynthesis and Transport to Regulate Root Branching in Response to Nitrate.” <i>Journal of Experimental Botany</i>, vol. 71, no. 15, Oxford University Press, 2020, pp. 4480–94, doi:<a href=\"https://doi.org/10.1093/jxb/eraa242\">10.1093/jxb/eraa242</a>.","short":"A. Maghiaoui, E. Bouguyon, C. Cuesta, F. Perrine-Walker, C. Alcon, G. Krouk, E. Benková, P. Nacry, A. Gojon, L. Bach, Journal of Experimental Botany 71 (2020) 4480–4494."},"date_updated":"2023-08-21T07:07:30Z","external_id":{"isi":["000553127600013"],"pmid":["32428238"]},"isi":1},{"publication":"Journal of Experimental Botany","has_accepted_license":"1","month":"07","oa_version":"Published Version","language":[{"iso":"eng"}],"date_published":"2020-07-06T00:00:00Z","type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"oa":1,"publication_identifier":{"issn":["0022-0957"],"eissn":["1460-2431"]},"status":"public","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","file":[{"checksum":"b06aaaa93dc41896da805fe4b75cf3a1","file_size":1916031,"date_created":"2020-10-06T07:41:35Z","content_type":"application/pdf","file_name":"2020_JourExperimBotany_Lee.pdf","date_updated":"2020-10-06T07:41:35Z","access_level":"open_access","success":1,"relation":"main_file","creator":"dernst","file_id":"8613"}],"author":[{"first_name":"E","last_name":"Lee","full_name":"Lee, E"},{"first_name":"B","last_name":"Vila Nova Santana","full_name":"Vila Nova Santana, B"},{"full_name":"Samuels, E","first_name":"E","last_name":"Samuels"},{"last_name":"Benitez-Fuente","first_name":"F","full_name":"Benitez-Fuente, F"},{"full_name":"Corsi, E","first_name":"E","last_name":"Corsi"},{"last_name":"Botella","first_name":"MA","full_name":"Botella, MA"},{"first_name":"J","last_name":"Perez-Sancho","full_name":"Perez-Sancho, J"},{"full_name":"Vanneste, S","first_name":"S","last_name":"Vanneste"},{"orcid":"0000-0002-8302-7596","full_name":"Friml, Jiří","first_name":"Jiří","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Macho","first_name":"A","full_name":"Macho, A"},{"last_name":"Alves Azevedo","first_name":"A","full_name":"Alves Azevedo, A"},{"first_name":"A","last_name":"Rosado","full_name":"Rosado, A"}],"issue":"14","_id":"7646","pmid":1,"title":"Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis","intvolume":"        71","publication_status":"published","department":[{"_id":"JiFr"}],"article_processing_charge":"No","date_created":"2020-04-06T10:57:08Z","file_date_updated":"2020-10-06T07:41:35Z","page":"3986–3998","quality_controlled":"1","article_type":"original","publisher":"Oxford University Press","isi":1,"external_id":{"isi":["000553125400007"],"pmid":["32179893"]},"date_updated":"2023-08-18T10:27:52Z","year":"2020","citation":{"ista":"Lee E, Vila Nova Santana B, Samuels E, Benitez-Fuente F, Corsi E, Botella M, Perez-Sancho J, Vanneste S, Friml J, Macho A, Alves Azevedo A, Rosado A. 2020. Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis. Journal of Experimental Botany. 71(14), 3986–3998.","mla":"Lee, E., et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and PI4P-Associated Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.” <i>Journal of Experimental Botany</i>, vol. 71, no. 14, Oxford University Press, 2020, pp. 3986–3998, doi:<a href=\"https://doi.org/10.1093/jxb/eraa138\">10.1093/jxb/eraa138</a>.","short":"E. Lee, B. Vila Nova Santana, E. Samuels, F. Benitez-Fuente, E. Corsi, M. Botella, J. Perez-Sancho, S. Vanneste, J. Friml, A. Macho, A. Alves Azevedo, A. Rosado, Journal of Experimental Botany 71 (2020) 3986–3998.","chicago":"Lee, E, B Vila Nova Santana, E Samuels, F Benitez-Fuente, E Corsi, MA Botella, J Perez-Sancho, et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and PI4P-Associated Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.” <i>Journal of Experimental Botany</i>. Oxford University Press, 2020. <a href=\"https://doi.org/10.1093/jxb/eraa138\">https://doi.org/10.1093/jxb/eraa138</a>.","ieee":"E. Lee <i>et al.</i>, “Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis,” <i>Journal of Experimental Botany</i>, vol. 71, no. 14. Oxford University Press, pp. 3986–3998, 2020.","apa":"Lee, E., Vila Nova Santana, B., Samuels, E., Benitez-Fuente, F., Corsi, E., Botella, M., … Rosado, A. (2020). Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis. <i>Journal of Experimental Botany</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/jxb/eraa138\">https://doi.org/10.1093/jxb/eraa138</a>","ama":"Lee E, Vila Nova Santana B, Samuels E, et al. Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis. <i>Journal of Experimental Botany</i>. 2020;71(14):3986–3998. doi:<a href=\"https://doi.org/10.1093/jxb/eraa138\">10.1093/jxb/eraa138</a>"},"abstract":[{"text":"In plant cells, environmental stressors promote changes in connectivity between the cortical ER and the PM. Although this process is tightly regulated in space and time, the molecular signals and structural components mediating these changes in inter-organelle communication are only starting to be characterized. In this report, we confirm the presence of a putative tethering complex containing the synaptotagmins 1 and 5 (SYT1 and SYT5) and the Ca2+ and lipid binding protein 1 (CLB1/SYT7). This complex is enriched at ER-PM contact sites (EPCS), have slow responses to changes in extracellular Ca2+, and display severe cytoskeleton-dependent rearrangements in response to the trivalent lanthanum (La3+) and gadolinium (Gd3+) rare earth elements (REEs). Although REEs are generally used as non-selective cation channel blockers at the PM, here we show that the slow internalization of REEs into the cytosol underlies the activation of the Ca2+/Calmodulin intracellular signaling, the accumulation of phosphatidylinositol-4-phosphate (PI4P) at the PM, and the cytoskeleton-dependent rearrangement of the SYT1/SYT5 EPCS complexes. We propose that the observed EPCS rearrangements act as a slow adaptive response to sustained stress conditions, and that this process involves the accumulation of stress-specific phosphoinositides species at the PM.","lang":"eng"}],"doi":"10.1093/jxb/eraa138","day":"06","ddc":["580"],"volume":71},{"date_published":"2018-04-13T00:00:00Z","type":"journal_article","publication_identifier":{"issn":["0022-0957"],"eissn":["1460-2431"]},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","status":"public","publication":"Journal of Experimental Botany","oa_version":"None","project":[{"grant_number":"282300","name":"Polarity and subcellular dynamics in plants","_id":"25716A02-B435-11E9-9278-68D0E5697425","call_identifier":"FP7"}],"month":"04","language":[{"iso":"eng"}],"keyword":["Plant Science","Physiology"],"date_updated":"2025-05-07T11:12:33Z","citation":{"ama":"Moturu TR, Thula S, Singh RK, et al. Molecular evolution and diversification of the SMXL gene family. <i>Journal of Experimental Botany</i>. 2018;69(9):2367-2378. doi:<a href=\"https://doi.org/10.1093/jxb/ery097\">10.1093/jxb/ery097</a>","apa":"Moturu, T. R., Thula, S., Singh, R. K., Nodzyński, T., Vařeková, R. S., Friml, J., &#38; Simon, S. (2018). Molecular evolution and diversification of the SMXL gene family. <i>Journal of Experimental Botany</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/jxb/ery097\">https://doi.org/10.1093/jxb/ery097</a>","chicago":"Moturu, Taraka Ramji, Sravankumar Thula, Ravi Kumar Singh, Tomasz Nodzyński, Radka Svobodová Vařeková, Jiří Friml, and Sibu Simon. “Molecular Evolution and Diversification of the SMXL Gene Family.” <i>Journal of Experimental Botany</i>. Oxford University Press, 2018. <a href=\"https://doi.org/10.1093/jxb/ery097\">https://doi.org/10.1093/jxb/ery097</a>.","ieee":"T. R. Moturu <i>et al.</i>, “Molecular evolution and diversification of the SMXL gene family,” <i>Journal of Experimental Botany</i>, vol. 69, no. 9. Oxford University Press, pp. 2367–2378, 2018.","mla":"Moturu, Taraka Ramji, et al. “Molecular Evolution and Diversification of the SMXL Gene Family.” <i>Journal of Experimental Botany</i>, vol. 69, no. 9, Oxford University Press, 2018, pp. 2367–78, doi:<a href=\"https://doi.org/10.1093/jxb/ery097\">10.1093/jxb/ery097</a>.","short":"T.R. Moturu, S. Thula, R.K. Singh, T. Nodzyński, R.S. Vařeková, J. Friml, S. Simon, Journal of Experimental Botany 69 (2018) 2367–2378.","ista":"Moturu TR, Thula S, Singh RK, Nodzyński T, Vařeková RS, Friml J, Simon S. 2018. Molecular evolution and diversification of the SMXL gene family. Journal of Experimental Botany. 69(9), 2367–2378."},"year":"2018","isi":1,"external_id":{"isi":["000430727000016"],"pmid":["29538714"]},"doi":"10.1093/jxb/ery097","day":"13","abstract":[{"lang":"eng","text":"Strigolactones (SLs) are a relatively recent addition to the list of plant hormones that control different aspects of plant development. SL signalling is perceived by an α/β hydrolase, DWARF 14 (D14). A close homolog of D14, KARRIKIN INSENSTIVE2 (KAI2), is involved in perception of an uncharacterized molecule called karrikin (KAR). Recent studies in Arabidopsis identified the SUPPRESSOR OF MAX2 1 (SMAX1) and SMAX1-LIKE 7 (SMXL7) to be potential SCF–MAX2 complex-mediated proteasome targets of KAI2 and D14, respectively. Genetic studies on SMXL7 and SMAX1 demonstrated distinct developmental roles for each, but very little is known about these repressors in terms of their sequence features. In this study, we performed an extensive comparative analysis of SMXLs and determined their phylogenetic and evolutionary history in the plant lineage. Our results show that SMXL family members can be sub-divided into four distinct phylogenetic clades/classes, with an ancient SMAX1. Further, we identified the clade-specific motifs that have evolved and that might act as determinants of SL-KAR signalling specificity. These specificities resulted from functional diversities among the clades. Our results suggest that a gradual co-evolution of SMXL members with their upstream receptors D14/KAI2 provided an increased specificity to both the SL perception and response in land plants."}],"volume":69,"acknowledgement":"This project received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Actions and it is co-financed by the South Moravian Region under grant agreement No. 665860 (SS). Access to computing and storage facilities owned by parties and projects contributing to the national grid infrastructure, MetaCentrum, provided under the program ‘Projects of Large Infrastructure for Research, Development, and Innovations’ (LM2010005) was greatly appreciated (RSV). The project was funded by The Ministry of Education, Youth and Sports/MES of the Czech Republic under the project CEITEC 2020 (LQ1601) (TN, TRM). JF was supported by the European Research Council (project ERC-2011-StG 20101109-PSDP) and the Czech Science Foundation GAČR (GA13-40637S). We thank Dr Kamel Chibani for active discussions on the evolutionary analysis and Nandan Mysore Vardarajan for his critical comments on the manuscript. This article reflects\r\nonly the authors’ views, and the EU is not responsible for any use that may be made of the information it contains. ","pmid":1,"_id":"10881","scopus_import":"1","author":[{"full_name":"Moturu, Taraka Ramji","first_name":"Taraka Ramji","last_name":"Moturu"},{"first_name":"Sravankumar","last_name":"Thula","full_name":"Thula, Sravankumar"},{"first_name":"Ravi Kumar","last_name":"Singh","full_name":"Singh, Ravi Kumar"},{"full_name":"Nodzyński, Tomasz","first_name":"Tomasz","last_name":"Nodzyński"},{"full_name":"Vařeková, Radka Svobodová","last_name":"Vařeková","first_name":"Radka Svobodová"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596","last_name":"Friml","first_name":"Jiří"},{"full_name":"Simon, Sibu","first_name":"Sibu","last_name":"Simon"}],"issue":"9","publication_status":"published","article_processing_charge":"No","department":[{"_id":"JiFr"}],"date_created":"2022-03-18T12:43:22Z","title":"Molecular evolution and diversification of the SMXL gene family","intvolume":"        69","page":"2367-2378","quality_controlled":"1","ec_funded":1,"publisher":"Oxford University Press","article_type":"original"}]