---
_id: '12894'
acknowledgement: "The abstracts in this booklet are licenced under a CC BY 4.0 licence
  (https://creativecommons.org/licenses/by/4.0/legalcode), except Markus Wallerberger’s
  contribution at page 21, licenced under a CC BY-SA 4.0 licence (https://creativecommons.org/licenses/by-sa/4.0/legalcode).\r\n"
article_processing_charge: No
author:
- first_name: Alois
  full_name: Schlögl, Alois
  id: 45BF87EE-F248-11E8-B48F-1D18A9856A87
  last_name: Schlögl
  orcid: 0000-0002-5621-8100
- first_name: Andrei
  full_name: Hornoiu, Andrei
  id: 77129392-B450-11EA-8745-D4653DDC885E
  last_name: Hornoiu
- first_name: Stefano
  full_name: Elefante, Stefano
  id: 490F40CE-F248-11E8-B48F-1D18A9856A87
  last_name: Elefante
- first_name: Stephan
  full_name: Stadlbauer, Stephan
  id: 4D0BC184-F248-11E8-B48F-1D18A9856A87
  last_name: Stadlbauer
citation:
  ama: 'Schlögl A, Hornoiu A, Elefante S, Stadlbauer S. Where is the sweet spot? A
    procurement story of general purpose compute nodes. In: <i>ASHPC22 - Austrian-Slovenian
    HPC Meeting 2022</i>. EuroCC Austria c/o Universität Wien; 2022:7. doi:<a href="https://doi.org/10.25365/phaidra.337">10.25365/phaidra.337</a>'
  apa: 'Schlögl, A., Hornoiu, A., Elefante, S., &#38; Stadlbauer, S. (2022). Where
    is the sweet spot? A procurement story of general purpose compute nodes. In <i>ASHPC22
    - Austrian-Slovenian HPC Meeting 2022</i> (p. 7). Grundlsee, Austria: EuroCC Austria
    c/o Universität Wien. <a href="https://doi.org/10.25365/phaidra.337">https://doi.org/10.25365/phaidra.337</a>'
  chicago: Schlögl, Alois, Andrei Hornoiu, Stefano Elefante, and Stephan Stadlbauer.
    “Where Is the Sweet Spot? A Procurement Story of General Purpose Compute Nodes.”
    In <i>ASHPC22 - Austrian-Slovenian HPC Meeting 2022</i>, 7. EuroCC Austria c/o
    Universität Wien, 2022. <a href="https://doi.org/10.25365/phaidra.337">https://doi.org/10.25365/phaidra.337</a>.
  ieee: A. Schlögl, A. Hornoiu, S. Elefante, and S. Stadlbauer, “Where is the sweet
    spot? A procurement story of general purpose compute nodes,” in <i>ASHPC22 - Austrian-Slovenian
    HPC Meeting 2022</i>, Grundlsee, Austria, 2022, p. 7.
  ista: 'Schlögl A, Hornoiu A, Elefante S, Stadlbauer S. 2022. Where is the sweet
    spot? A procurement story of general purpose compute nodes. ASHPC22 - Austrian-Slovenian
    HPC Meeting 2022. ASHPC: Austrian-Slovenian HPC Meeting, 7.'
  mla: Schlögl, Alois, et al. “Where Is the Sweet Spot? A Procurement Story of General
    Purpose Compute Nodes.” <i>ASHPC22 - Austrian-Slovenian HPC Meeting 2022</i>,
    EuroCC Austria c/o Universität Wien, 2022, p. 7, doi:<a href="https://doi.org/10.25365/phaidra.337">10.25365/phaidra.337</a>.
  short: A. Schlögl, A. Hornoiu, S. Elefante, S. Stadlbauer, in:, ASHPC22 - Austrian-Slovenian
    HPC Meeting 2022, EuroCC Austria c/o Universität Wien, 2022, p. 7.
conference:
  end_date: 2022-06-02
  location: Grundlsee, Austria
  name: 'ASHPC: Austrian-Slovenian HPC Meeting'
  start_date: 2022-05-31
date_created: 2023-05-05T09:13:42Z
date_published: 2022-06-02T00:00:00Z
date_updated: 2023-05-16T07:42:56Z
day: '02'
ddc:
- '000'
department:
- _id: ScienComp
doi: 10.25365/phaidra.337
file:
- access_level: open_access
  checksum: e3f8c240b85422ce2190e7b203cc2563
  content_type: application/pdf
  creator: schloegl
  date_created: 2023-05-05T09:06:00Z
  date_updated: 2023-05-05T09:06:00Z
  file_id: '12895'
  file_name: BOOKLET_ASHPC22.pdf
  file_size: 7180531
  relation: main_file
  success: 1
file_date_updated: 2023-05-05T09:06:00Z
has_accepted_license: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: '7'
publication: ASHPC22 - Austrian-Slovenian HPC Meeting 2022
publication_identifier:
  isbn:
  - 978-3-200-08499-5
publication_status: published
publisher: EuroCC Austria c/o Universität Wien
status: public
title: Where is the sweet spot? A procurement story of general purpose compute nodes
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference_abstract
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '13064'
abstract:
- lang: eng
  text: Genetically informed, deep-phenotyped biobanks are an important research resource
    and it is imperative that the most powerful, versatile, and efficient analysis
    approaches are used. Here, we apply our recently developed Bayesian grouped mixture
    of regressions model (GMRM) in the UK and Estonian Biobanks and obtain the highest
    genomic prediction accuracy reported to date across 21 heritable traits. When
    compared to other approaches, GMRM accuracy was greater than annotation prediction
    models run in the LDAK or LDPred-funct software by 15% (SE 7%) and 14% (SE 2%),
    respectively, and was 18% (SE 3%) greater than a baseline BayesR model without
    single-nucleotide polymorphism (SNP) markers grouped into minor allele frequency–linkage
    disequilibrium (MAF-LD) annotation categories. For height, the prediction accuracy
    R 2 was 47% in a UK Biobank holdout sample, which was 76% of the estimated h SNP
    2 . We then extend our GMRM prediction model to provide mixed-linear model association
    (MLMA) SNP marker estimates for genome-wide association (GWAS) discovery, which
    increased the independent loci detected to 16,162 in unrelated UK Biobank individuals,
    compared to 10,550 from BoltLMM and 10,095 from Regenie, a 62 and 65% increase,
    respectively. The average χ2 value of the leading markers increased by 15.24 (SE
    0.41) for every 1% increase in prediction accuracy gained over a baseline BayesR
    model across the traits. Thus, we show that modeling genetic associations accounting
    for MAF and LD differences among SNP markers, and incorporating prior knowledge
    of genomic function, is important for both genomic prediction and discovery in
    large-scale individual-level studies.
article_processing_charge: No
author:
- first_name: Etienne
  full_name: Orliac, Etienne
  last_name: Orliac
- first_name: Daniel
  full_name: Trejo Banos, Daniel
  last_name: Trejo Banos
- first_name: Sven
  full_name: Ojavee, Sven
  last_name: Ojavee
- first_name: Kristi
  full_name: Läll, Kristi
  last_name: Läll
- first_name: Reedik
  full_name: Mägi, Reedik
  last_name: Mägi
- first_name: Peter
  full_name: Visscher, Peter
  last_name: Visscher
- first_name: Matthew Richard
  full_name: Robinson, Matthew Richard
  id: E5D42276-F5DA-11E9-8E24-6303E6697425
  last_name: Robinson
  orcid: 0000-0001-8982-8813
citation:
  ama: Orliac E, Trejo Banos D, Ojavee S, et al. Improving genome-wide association
    discovery and genomic prediction accuracy in biobank data. 2022. doi:<a href="https://doi.org/10.5061/DRYAD.GTHT76HMZ">10.5061/DRYAD.GTHT76HMZ</a>
  apa: Orliac, E., Trejo Banos, D., Ojavee, S., Läll, K., Mägi, R., Visscher, P.,
    &#38; Robinson, M. R. (2022). Improving genome-wide association discovery and
    genomic prediction accuracy in biobank data. Dryad. <a href="https://doi.org/10.5061/DRYAD.GTHT76HMZ">https://doi.org/10.5061/DRYAD.GTHT76HMZ</a>
  chicago: Orliac, Etienne, Daniel Trejo Banos, Sven Ojavee, Kristi Läll, Reedik Mägi,
    Peter Visscher, and Matthew Richard Robinson. “Improving Genome-Wide Association
    Discovery and Genomic Prediction Accuracy in Biobank Data.” Dryad, 2022. <a href="https://doi.org/10.5061/DRYAD.GTHT76HMZ">https://doi.org/10.5061/DRYAD.GTHT76HMZ</a>.
  ieee: E. Orliac <i>et al.</i>, “Improving genome-wide association discovery and
    genomic prediction accuracy in biobank data.” Dryad, 2022.
  ista: Orliac E, Trejo Banos D, Ojavee S, Läll K, Mägi R, Visscher P, Robinson MR.
    2022. Improving genome-wide association discovery and genomic prediction accuracy
    in biobank data, Dryad, <a href="https://doi.org/10.5061/DRYAD.GTHT76HMZ">10.5061/DRYAD.GTHT76HMZ</a>.
  mla: Orliac, Etienne, et al. <i>Improving Genome-Wide Association Discovery and
    Genomic Prediction Accuracy in Biobank Data</i>. Dryad, 2022, doi:<a href="https://doi.org/10.5061/DRYAD.GTHT76HMZ">10.5061/DRYAD.GTHT76HMZ</a>.
  short: E. Orliac, D. Trejo Banos, S. Ojavee, K. Läll, R. Mägi, P. Visscher, M.R.
    Robinson, (2022).
date_created: 2023-05-23T16:28:13Z
date_published: 2022-09-02T00:00:00Z
date_updated: 2023-08-03T12:40:37Z
day: '02'
ddc:
- '570'
department:
- _id: MaRo
doi: 10.5061/DRYAD.GTHT76HMZ
license: https://creativecommons.org/publicdomain/zero/1.0/
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.gtht76hmz
month: '09'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '11733'
    relation: used_in_publication
    status: public
status: public
title: Improving genome-wide association discovery and genomic prediction accuracy
  in biobank data
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '13066'
abstract:
- lang: eng
  text: Chromosomal inversions have been shown to play a major role in local adaptation
    by suppressing recombination between alternative arrangements and maintaining
    beneficial allele combinations. However, so far, their importance relative to
    the remaining genome remains largely unknown. Understanding the genetic architecture
    of adaptation requires better estimates of how loci of different effect sizes
    contribute to phenotypic variation. Here, we used three Swedish islands where
    the marine snail Littorina saxatilis has repeatedly evolved into two distinct
    ecotypes along a habitat transition. We estimated the contribution of inversion
    polymorphisms to phenotypic divergence while controlling for polygenic effects
    in the remaining genome using a quantitative genetics framework. We confirmed
    the importance of inversions but showed that contributions of loci outside inversions
    are of similar magnitude, with variable proportions dependent on the trait and
    the population. Some inversions showed consistent effects across all sites, whereas
    others exhibited site-specific effects, indicating that the genomic basis for
    replicated phenotypic divergence is only partly shared. The contributions of sexual
    dimorphism as well as environmental factors to phenotypic variation were significant
    but minor compared to inversions and polygenic background. Overall, this integrated
    approach provides insight into the multiple mechanisms contributing to parallel
    phenotypic divergence.
article_processing_charge: No
author:
- first_name: Eva
  full_name: Koch, Eva
  last_name: Koch
- first_name: Mark
  full_name: Ravinet, Mark
  last_name: Ravinet
- first_name: Anja M
  full_name: Westram, Anja M
  id: 3C147470-F248-11E8-B48F-1D18A9856A87
  last_name: Westram
  orcid: 0000-0003-1050-4969
- first_name: Kerstin
  full_name: Jonannesson, Kerstin
  last_name: Jonannesson
- first_name: Roger
  full_name: Butlin, Roger
  last_name: Butlin
citation:
  ama: 'Koch E, Ravinet M, Westram AM, Jonannesson K, Butlin R. Data from: Genetic
    architecture of repeated phenotypic divergence in Littorina saxatilis ecotype
    evolution. 2022. doi:<a href="https://doi.org/10.5061/DRYAD.M905QFV4B">10.5061/DRYAD.M905QFV4B</a>'
  apa: 'Koch, E., Ravinet, M., Westram, A. M., Jonannesson, K., &#38; Butlin, R. (2022).
    Data from: Genetic architecture of repeated phenotypic divergence in Littorina
    saxatilis ecotype evolution. Dryad. <a href="https://doi.org/10.5061/DRYAD.M905QFV4B">https://doi.org/10.5061/DRYAD.M905QFV4B</a>'
  chicago: 'Koch, Eva, Mark Ravinet, Anja M Westram, Kerstin Jonannesson, and Roger
    Butlin. “Data from: Genetic Architecture of Repeated Phenotypic Divergence in
    Littorina Saxatilis Ecotype Evolution.” Dryad, 2022. <a href="https://doi.org/10.5061/DRYAD.M905QFV4B">https://doi.org/10.5061/DRYAD.M905QFV4B</a>.'
  ieee: 'E. Koch, M. Ravinet, A. M. Westram, K. Jonannesson, and R. Butlin, “Data
    from: Genetic architecture of repeated phenotypic divergence in Littorina saxatilis
    ecotype evolution.” Dryad, 2022.'
  ista: 'Koch E, Ravinet M, Westram AM, Jonannesson K, Butlin R. 2022. Data from:
    Genetic architecture of repeated phenotypic divergence in Littorina saxatilis
    ecotype evolution, Dryad, <a href="https://doi.org/10.5061/DRYAD.M905QFV4B">10.5061/DRYAD.M905QFV4B</a>.'
  mla: 'Koch, Eva, et al. <i>Data from: Genetic Architecture of Repeated Phenotypic
    Divergence in Littorina Saxatilis Ecotype Evolution</i>. Dryad, 2022, doi:<a href="https://doi.org/10.5061/DRYAD.M905QFV4B">10.5061/DRYAD.M905QFV4B</a>.'
  short: E. Koch, M. Ravinet, A.M. Westram, K. Jonannesson, R. Butlin, (2022).
date_created: 2023-05-23T16:33:12Z
date_published: 2022-07-28T00:00:00Z
date_updated: 2023-08-04T09:42:10Z
day: '28'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.5061/DRYAD.M905QFV4B
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.m905qfv4b
month: '07'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '12247'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: Genetic architecture of repeated phenotypic divergence in Littorina
  saxatilis ecotype evolution'
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '13076'
abstract:
- lang: eng
  text: "The source code for replicating experiments presented in the paper.\r\n\r\nThe
    implementation of the designed priority schedulers can be found in Galois-2.2.1/include/Galois/WorkList/:\r\nStealingMultiQueue.h
    is the StealingMultiQueue.\r\nMQOptimized/ contains MQ Optimized variants.\r\n\r\nWe
    provide images that contain all the dependencies and datasets. Images can be pulled
    from npostnikova/mq-based-schedulers repository, or downloaded from Zenodo. See
    readme for more detail."
article_processing_charge: No
author:
- first_name: Anastasiia
  full_name: Postnikova, Anastasiia
  last_name: Postnikova
- first_name: Nikita
  full_name: Koval, Nikita
  id: 2F4DB10C-F248-11E8-B48F-1D18A9856A87
  last_name: Koval
- first_name: Giorgi
  full_name: Nadiradze, Giorgi
  id: 3279A00C-F248-11E8-B48F-1D18A9856A87
  last_name: Nadiradze
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
citation:
  ama: Postnikova A, Koval N, Nadiradze G, Alistarh D-A. Multi-queues can be state-of-the-art
    priority schedulers. 2022. doi:<a href="https://doi.org/10.5281/ZENODO.5733408">10.5281/ZENODO.5733408</a>
  apa: Postnikova, A., Koval, N., Nadiradze, G., &#38; Alistarh, D.-A. (2022). Multi-queues
    can be state-of-the-art priority schedulers. Zenodo. <a href="https://doi.org/10.5281/ZENODO.5733408">https://doi.org/10.5281/ZENODO.5733408</a>
  chicago: Postnikova, Anastasiia, Nikita Koval, Giorgi Nadiradze, and Dan-Adrian
    Alistarh. “Multi-Queues Can Be State-of-the-Art Priority Schedulers.” Zenodo,
    2022. <a href="https://doi.org/10.5281/ZENODO.5733408">https://doi.org/10.5281/ZENODO.5733408</a>.
  ieee: A. Postnikova, N. Koval, G. Nadiradze, and D.-A. Alistarh, “Multi-queues can
    be state-of-the-art priority schedulers.” Zenodo, 2022.
  ista: Postnikova A, Koval N, Nadiradze G, Alistarh D-A. 2022. Multi-queues can be
    state-of-the-art priority schedulers, Zenodo, <a href="https://doi.org/10.5281/ZENODO.5733408">10.5281/ZENODO.5733408</a>.
  mla: Postnikova, Anastasiia, et al. <i>Multi-Queues Can Be State-of-the-Art Priority
    Schedulers</i>. Zenodo, 2022, doi:<a href="https://doi.org/10.5281/ZENODO.5733408">10.5281/ZENODO.5733408</a>.
  short: A. Postnikova, N. Koval, G. Nadiradze, D.-A. Alistarh, (2022).
date_created: 2023-05-23T17:05:40Z
date_published: 2022-01-03T00:00:00Z
date_updated: 2023-08-03T06:48:34Z
day: '03'
ddc:
- '510'
department:
- _id: DaAl
doi: 10.5281/ZENODO.5733408
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/zenodo.5813846
month: '01'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
  link:
  - relation: software
    url: https://github.com/npostnikova/mq-based-schedulers/tree/v1.1
  record:
  - id: '11180'
    relation: used_in_publication
    status: public
status: public
title: Multi-queues can be state-of-the-art priority schedulers
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '13239'
abstract:
- lang: eng
  text: Brains are thought to engage in predictive learning - learning to predict
    upcoming stimuli - to construct an internal model of their environment. This is
    especially notable for spatial navigation, as first described by Tolman’s latent
    learning tasks. However, predictive learning has also been observed in sensory
    cortex, in settings unrelated to spatial navigation. Apart from normative frameworks
    such as active inference or efficient coding, what could be the utility of learning
    to predict the patterns of occurrence of correlated stimuli? Here we show that
    prediction, and thereby the construction of an internal model of sequential stimuli,
    can bootstrap the learning process of a working memory task in a recurrent neural
    network. We implemented predictive learning alongside working memory match-tasks,
    and networks emerged to solve the prediction task first by encoding information
    across time to predict upcoming stimuli, and then eavesdropped on this solution
    to solve the matching task. Eavesdropping was most beneficial when neural resources
    were limited. Hence, predictive learning acts as a general neural mechanism to
    learn to store sensory information that can later be essential for working memory
    tasks.
acknowledgement: "The authors would like to thank members of the Vogels lab and Manohar
  lab, as well as Adam Packer, Andrew Saxe, Stefano Sarao Mannelli and Jacob Bakermans
  for fruitful discussions and comments on earlier versions of the manuscript.\r\nTLvdP
  was supported by funding from the Biotechnology and Biological Sciences Research
  Council (BBSRC) [grant number BB/M011224/1]. TPV was supported by an ERC Consolidator
  Grant (SYNAPSEEK). SGM was funded by a MRC Clinician Scientist Fellowship MR/P00878X
  and Leverhulme Grant RPG-2018-310."
article_processing_charge: No
author:
- first_name: Thijs L.
  full_name: Van Der Plas, Thijs L.
  last_name: Van Der Plas
- first_name: Tim P
  full_name: Vogels, Tim P
  id: CB6FF8D2-008F-11EA-8E08-2637E6697425
  last_name: Vogels
  orcid: 0000-0003-3295-6181
- first_name: Sanjay G.
  full_name: Manohar, Sanjay G.
  last_name: Manohar
citation:
  ama: 'Van Der Plas TL, Vogels TP, Manohar SG. Predictive learning enables neural
    networks to learn complex working memory tasks. In: <i>Proceedings of Machine
    Learning Research</i>. Vol 199. ML Research Press; 2022:518-531.'
  apa: Van Der Plas, T. L., Vogels, T. P., &#38; Manohar, S. G. (2022). Predictive
    learning enables neural networks to learn complex working memory tasks. In <i>Proceedings
    of Machine Learning Research</i> (Vol. 199, pp. 518–531). ML Research Press.
  chicago: Van Der Plas, Thijs L., Tim P Vogels, and Sanjay G. Manohar. “Predictive
    Learning Enables Neural Networks to Learn Complex Working Memory Tasks.” In <i>Proceedings
    of Machine Learning Research</i>, 199:518–31. ML Research Press, 2022.
  ieee: T. L. Van Der Plas, T. P. Vogels, and S. G. Manohar, “Predictive learning
    enables neural networks to learn complex working memory tasks,” in <i>Proceedings
    of Machine Learning Research</i>, 2022, vol. 199, pp. 518–531.
  ista: Van Der Plas TL, Vogels TP, Manohar SG. 2022. Predictive learning enables
    neural networks to learn complex working memory tasks. Proceedings of Machine
    Learning Research. vol. 199, 518–531.
  mla: Van Der Plas, Thijs L., et al. “Predictive Learning Enables Neural Networks
    to Learn Complex Working Memory Tasks.” <i>Proceedings of Machine Learning Research</i>,
    vol. 199, ML Research Press, 2022, pp. 518–31.
  short: T.L. Van Der Plas, T.P. Vogels, S.G. Manohar, in:, Proceedings of Machine
    Learning Research, ML Research Press, 2022, pp. 518–531.
date_created: 2023-07-16T22:01:12Z
date_published: 2022-12-01T00:00:00Z
date_updated: 2023-07-18T06:36:28Z
day: '01'
ddc:
- '000'
department:
- _id: TiVo
ec_funded: 1
file:
- access_level: open_access
  checksum: 7530a93ef42e10b4db1e5e4b69796e93
  content_type: application/pdf
  creator: dernst
  date_created: 2023-07-18T06:32:38Z
  date_updated: 2023-07-18T06:32:38Z
  file_id: '13243'
  file_name: 2022_PMLR_vanderPlas.pdf
  file_size: 585135
  relation: main_file
  success: 1
file_date_updated: 2023-07-18T06:32:38Z
has_accepted_license: '1'
intvolume: '       199'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 518-531
project:
- _id: 0aacfa84-070f-11eb-9043-d7eb2c709234
  call_identifier: H2020
  grant_number: '819603'
  name: Learning the shape of synaptic plasticity rules for neuronal architectures
    and function through machine learning.
publication: Proceedings of Machine Learning Research
publication_identifier:
  eissn:
  - 2640-3498
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Predictive learning enables neural networks to learn complex working memory
  tasks
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 199
year: '2022'
...
---
_id: '13240'
abstract:
- lang: eng
  text: Ustilago maydis is a biotrophic phytopathogenic fungus that causes corn smut
    disease. As a well-established model system, U. maydis is genetically fully accessible
    with large omics datasets available and subject to various biological questions
    ranging from DNA-repair, RNA-transport, and protein secretion to disease biology.
    For many genetic approaches, tight control of transgene regulation is important.
    Here we established an optimised version of the Tetracycline-ON (TetON) system
    for U. maydis. We demonstrate the Tetracycline concentration-dependent expression
    of fluorescent protein transgenes and the system’s suitability for the induced
    expression of the toxic protein BCL2 Associated X-1 (Bax1). The Golden Gate compatible
    vector system contains a native minimal promoter from the mating factor a-1 encoding
    gene, mfa with ten copies of the tet-regulated operator (tetO) and a codon optimised
    Tet-repressor (tetR*) which is translationally fused to the native transcriptional
    corepressor Mql1 (UMAG_05501). The metabolism-independent transcriptional regulator
    system is functional both, in liquid culture as well as on solid media in the
    presence of the inducer and can become a useful tool for toxin-antitoxin studies,
    identification of antifungal proteins, and to study functions of toxic gene products
    in Ustilago maydis.
acknowledgement: "The research leading to these results received funding from the
  European Research Council under the European Union’s Seventh Framework Programme
  ERC-2013-STG (grant agreement: 335691), the Austrian Science Fund (I 3033-B22),
  the Austrian Academy of Sciences, and the Deutsche Forschungsgemeinschaft (DFG,
  German Research Foundation) under Germany's Excellence Strategy EXC-2070-390732324
  (PhenoRob) and DFG grant (DJ 64/5-1).\r\nWe would like to thank the GMI/IMBA/IMP
  core facilities for their excellent technical support. We would like to acknowledge
  Dr. Sinéad A. O’Sullivan from DZNE, University of Bonn for providing anti-GFP antibodies.
  The authors are thankful to the Excellence University of Bonn for providing infrastructure
  and instrumentation facilities at the INRES-Plant Pathology department."
article_number: '1029114'
article_processing_charge: Yes
article_type: original
author:
- first_name: Kishor D.
  full_name: Ingole, Kishor D.
  last_name: Ingole
- first_name: Nithya
  full_name: Nagarajan, Nithya
  last_name: Nagarajan
- first_name: Simon
  full_name: Uhse, Simon
  last_name: Uhse
- first_name: Caterina
  full_name: Giannini, Caterina
  id: e3fdddd5-f6e0-11ea-865d-ca99ee6367f4
  last_name: Giannini
- first_name: Armin
  full_name: Djamei, Armin
  last_name: Djamei
citation:
  ama: Ingole KD, Nagarajan N, Uhse S, Giannini C, Djamei A. Tetracycline-controlled
    (TetON) gene expression system for the smut fungus Ustilago maydis. <i>Frontiers
    in Fungal Biology</i>. 2022;3. doi:<a href="https://doi.org/10.3389/ffunb.2022.1029114">10.3389/ffunb.2022.1029114</a>
  apa: Ingole, K. D., Nagarajan, N., Uhse, S., Giannini, C., &#38; Djamei, A. (2022).
    Tetracycline-controlled (TetON) gene expression system for the smut fungus Ustilago
    maydis. <i>Frontiers in Fungal Biology</i>. Frontiers Media. <a href="https://doi.org/10.3389/ffunb.2022.1029114">https://doi.org/10.3389/ffunb.2022.1029114</a>
  chicago: Ingole, Kishor D., Nithya Nagarajan, Simon Uhse, Caterina Giannini, and
    Armin Djamei. “Tetracycline-Controlled (TetON) Gene Expression System for the
    Smut Fungus Ustilago Maydis.” <i>Frontiers in Fungal Biology</i>. Frontiers Media,
    2022. <a href="https://doi.org/10.3389/ffunb.2022.1029114">https://doi.org/10.3389/ffunb.2022.1029114</a>.
  ieee: K. D. Ingole, N. Nagarajan, S. Uhse, C. Giannini, and A. Djamei, “Tetracycline-controlled
    (TetON) gene expression system for the smut fungus Ustilago maydis,” <i>Frontiers
    in Fungal Biology</i>, vol. 3. Frontiers Media, 2022.
  ista: Ingole KD, Nagarajan N, Uhse S, Giannini C, Djamei A. 2022. Tetracycline-controlled
    (TetON) gene expression system for the smut fungus Ustilago maydis. Frontiers
    in Fungal Biology. 3, 1029114.
  mla: Ingole, Kishor D., et al. “Tetracycline-Controlled (TetON) Gene Expression
    System for the Smut Fungus Ustilago Maydis.” <i>Frontiers in Fungal Biology</i>,
    vol. 3, 1029114, Frontiers Media, 2022, doi:<a href="https://doi.org/10.3389/ffunb.2022.1029114">10.3389/ffunb.2022.1029114</a>.
  short: K.D. Ingole, N. Nagarajan, S. Uhse, C. Giannini, A. Djamei, Frontiers in
    Fungal Biology 3 (2022).
date_created: 2023-07-16T22:01:12Z
date_published: 2022-10-19T00:00:00Z
date_updated: 2024-03-06T14:01:57Z
day: '19'
ddc:
- '579'
department:
- _id: JiFr
doi: 10.3389/ffunb.2022.1029114
file:
- access_level: open_access
  checksum: 2254e0119c0749d6f7237084fefcece6
  content_type: application/pdf
  creator: dernst
  date_created: 2023-07-17T11:46:34Z
  date_updated: 2023-07-17T11:46:34Z
  file_id: '13242'
  file_name: 2023_FrontiersFungalBio_Ingole.pdf
  file_size: 27966699
  relation: main_file
  success: 1
file_date_updated: 2023-07-17T11:46:34Z
has_accepted_license: '1'
intvolume: '         3'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
publication: Frontiers in Fungal Biology
publication_identifier:
  eissn:
  - 2673-6128
publication_status: published
publisher: Frontiers Media
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tetracycline-controlled (TetON) gene expression system for the smut fungus
  Ustilago maydis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2022'
...
---
_id: '13241'
abstract:
- lang: eng
  text: Addressing fairness concerns about machine learning models is a crucial step
    towards their long-term adoption in real-world automated systems. Many approaches
    for training fair models from data have been developed and an implicit assumption
    about such algorithms is that they are able to recover a fair model, despite potential
    historical biases in the data. In this work we show a number of impossibility
    results that indicate that there is no learning algorithm that can recover a fair
    model when a proportion of the dataset is subject to arbitrary manipulations.
    Specifically, we prove that there are situations in which an adversary can force
    any learner to return a biased classifier, with or without degrading accuracy,
    and that the strength of this bias increases for learning problems with underrepresented
    protected groups in the data. Our results emphasize on the importance of studying
    further data corruption models of various strength and of establishing stricter
    data collection practices for fairness-aware learning.
acknowledgement: "This paper is a shortened, workshop version of Konstantinov and
  Lampert (2021),\r\nhttps://arxiv.org/abs/2102.06004. For further results, including
  an analysis of algorithms achieving the lower bounds from this paper, we refer to
  the full version."
article_processing_charge: No
arxiv: 1
author:
- first_name: Nikola H
  full_name: Konstantinov, Nikola H
  id: 4B9D76E4-F248-11E8-B48F-1D18A9856A87
  last_name: Konstantinov
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Konstantinov NH, Lampert C. On the impossibility of fairness-aware learning
    from corrupted data. In: <i>Proceedings of Machine Learning Research</i>. Vol
    171. ML Research Press; 2022:59-83.'
  apa: Konstantinov, N. H., &#38; Lampert, C. (2022). On the impossibility of fairness-aware
    learning from corrupted data. In <i>Proceedings of Machine Learning Research</i>
    (Vol. 171, pp. 59–83). ML Research Press.
  chicago: Konstantinov, Nikola H, and Christoph Lampert. “On the Impossibility of
    Fairness-Aware Learning from Corrupted Data.” In <i>Proceedings of Machine Learning
    Research</i>, 171:59–83. ML Research Press, 2022.
  ieee: N. H. Konstantinov and C. Lampert, “On the impossibility of fairness-aware
    learning from corrupted data,” in <i>Proceedings of Machine Learning Research</i>,
    2022, vol. 171, pp. 59–83.
  ista: Konstantinov NH, Lampert C. 2022. On the impossibility of fairness-aware learning
    from corrupted data. Proceedings of Machine Learning Research. vol. 171, 59–83.
  mla: Konstantinov, Nikola H., and Christoph Lampert. “On the Impossibility of Fairness-Aware
    Learning from Corrupted Data.” <i>Proceedings of Machine Learning Research</i>,
    vol. 171, ML Research Press, 2022, pp. 59–83.
  short: N.H. Konstantinov, C. Lampert, in:, Proceedings of Machine Learning Research,
    ML Research Press, 2022, pp. 59–83.
date_created: 2023-07-16T22:01:13Z
date_published: 2022-12-01T00:00:00Z
date_updated: 2023-09-26T10:44:37Z
day: '01'
department:
- _id: ChLa
external_id:
  arxiv:
  - '2102.06004'
intvolume: '       171'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2102.06004
month: '12'
oa: 1
oa_version: Preprint
page: 59-83
publication: Proceedings of Machine Learning Research
publication_identifier:
  eissn:
  - 2640-3498
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
related_material:
  record:
  - id: '10802'
    relation: extended_version
    status: public
scopus_import: '1'
status: public
title: On the impossibility of fairness-aware learning from corrupted data
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 171
year: '2022'
...
---
_id: '9199'
abstract:
- lang: eng
  text: "We associate a certain tensor product lattice to any primitive integer lattice
    and ask about its typical shape. These lattices are related to the tangent bundle
    of Grassmannians and their study is motivated by Peyre's programme on \"freeness\"
    for rational points of bounded height on Fano\r\nvarieties."
acknowledgement: The authors are very grateful to Will Sawin for useful remarks about
  this topic. While working on this paper the first two authors were supported by
  EPSRC grant EP/P026710/1, and the first and last authors by FWF grant P 32428-N35.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Timothy D
  full_name: Browning, Timothy D
  id: 35827D50-F248-11E8-B48F-1D18A9856A87
  last_name: Browning
  orcid: 0000-0002-8314-0177
- first_name: Tal
  full_name: Horesh, Tal
  id: C8B7BF48-8D81-11E9-BCA9-F536E6697425
  last_name: Horesh
- first_name: Florian Alexander
  full_name: Wilsch, Florian Alexander
  id: 560601DA-8D36-11E9-A136-7AC1E5697425
  last_name: Wilsch
  orcid: 0000-0001-7302-8256
citation:
  ama: Browning TD, Horesh T, Wilsch FA. Equidistribution and freeness on Grassmannians.
    <i>Algebra &#38; Number Theory</i>. 2022;16(10):2385-2407. doi:<a href="https://doi.org/10.2140/ant.2022.16.2385">10.2140/ant.2022.16.2385</a>
  apa: Browning, T. D., Horesh, T., &#38; Wilsch, F. A. (2022). Equidistribution and
    freeness on Grassmannians. <i>Algebra &#38; Number Theory</i>. Mathematical Sciences
    Publishers. <a href="https://doi.org/10.2140/ant.2022.16.2385">https://doi.org/10.2140/ant.2022.16.2385</a>
  chicago: Browning, Timothy D, Tal Horesh, and Florian Alexander Wilsch. “Equidistribution
    and Freeness on Grassmannians.” <i>Algebra &#38; Number Theory</i>. Mathematical
    Sciences Publishers, 2022. <a href="https://doi.org/10.2140/ant.2022.16.2385">https://doi.org/10.2140/ant.2022.16.2385</a>.
  ieee: T. D. Browning, T. Horesh, and F. A. Wilsch, “Equidistribution and freeness
    on Grassmannians,” <i>Algebra &#38; Number Theory</i>, vol. 16, no. 10. Mathematical
    Sciences Publishers, pp. 2385–2407, 2022.
  ista: Browning TD, Horesh T, Wilsch FA. 2022. Equidistribution and freeness on Grassmannians.
    Algebra &#38; Number Theory. 16(10), 2385–2407.
  mla: Browning, Timothy D., et al. “Equidistribution and Freeness on Grassmannians.”
    <i>Algebra &#38; Number Theory</i>, vol. 16, no. 10, Mathematical Sciences Publishers,
    2022, pp. 2385–407, doi:<a href="https://doi.org/10.2140/ant.2022.16.2385">10.2140/ant.2022.16.2385</a>.
  short: T.D. Browning, T. Horesh, F.A. Wilsch, Algebra &#38; Number Theory 16 (2022)
    2385–2407.
date_created: 2021-02-25T09:56:57Z
date_published: 2022-12-01T00:00:00Z
date_updated: 2023-08-02T06:46:38Z
day: '01'
department:
- _id: TiBr
doi: 10.2140/ant.2022.16.2385
external_id:
  arxiv:
  - '2102.11552'
  isi:
  - '000961514100004'
intvolume: '        16'
isi: 1
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2102.11552
month: '12'
oa: 1
oa_version: Preprint
page: 2385-2407
project:
- _id: 26A8D266-B435-11E9-9278-68D0E5697425
  grant_number: EP-P026710-2
  name: Between rational and integral points
- _id: 26AEDAB2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P32428
  name: New frontiers of the Manin conjecture
publication: Algebra & Number Theory
publication_identifier:
  eissn:
  - 1944-7833
  issn:
  - 1937-0652
publication_status: published
publisher: Mathematical Sciences Publishers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Equidistribution and freeness on Grassmannians
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 16
year: '2022'
...
---
_id: '9311'
abstract:
- lang: eng
  text: 'Partially observable Markov decision processes (POMDPs) are standard models
    for dynamic systems with probabilistic and nondeterministic behaviour in uncertain
    environments. We prove that in POMDPs with long-run average objective, the decision
    maker has approximately optimal strategies with finite memory. This implies notably
    that approximating the long-run value is recursively enumerable, as well as a
    weak continuity property of the value with respect to the transition function. '
acknowledgement: "Partially supported by Austrian Science Fund (FWF) NFN Grant No
  RiSE/SHiNE S11407, by CONICYT Chile through grant PII 20150140, and by ECOS-CONICYT
  through grant C15E03.\r\n"
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Raimundo J
  full_name: Saona Urmeneta, Raimundo J
  id: BD1DF4C4-D767-11E9-B658-BC13E6697425
  last_name: Saona Urmeneta
  orcid: 0000-0001-5103-038X
- first_name: Bruno
  full_name: Ziliotto, Bruno
  last_name: Ziliotto
citation:
  ama: Chatterjee K, Saona Urmeneta RJ, Ziliotto B. Finite-memory strategies in POMDPs
    with long-run average objectives. <i>Mathematics of Operations Research</i>. 2022;47(1):100-119.
    doi:<a href="https://doi.org/10.1287/moor.2020.1116">10.1287/moor.2020.1116</a>
  apa: Chatterjee, K., Saona Urmeneta, R. J., &#38; Ziliotto, B. (2022). Finite-memory
    strategies in POMDPs with long-run average objectives. <i>Mathematics of Operations
    Research</i>. Institute for Operations Research and the Management Sciences. <a
    href="https://doi.org/10.1287/moor.2020.1116">https://doi.org/10.1287/moor.2020.1116</a>
  chicago: Chatterjee, Krishnendu, Raimundo J Saona Urmeneta, and Bruno Ziliotto.
    “Finite-Memory Strategies in POMDPs with Long-Run Average Objectives.” <i>Mathematics
    of Operations Research</i>. Institute for Operations Research and the Management
    Sciences, 2022. <a href="https://doi.org/10.1287/moor.2020.1116">https://doi.org/10.1287/moor.2020.1116</a>.
  ieee: K. Chatterjee, R. J. Saona Urmeneta, and B. Ziliotto, “Finite-memory strategies
    in POMDPs with long-run average objectives,” <i>Mathematics of Operations Research</i>,
    vol. 47, no. 1. Institute for Operations Research and the Management Sciences,
    pp. 100–119, 2022.
  ista: Chatterjee K, Saona Urmeneta RJ, Ziliotto B. 2022. Finite-memory strategies
    in POMDPs with long-run average objectives. Mathematics of Operations Research.
    47(1), 100–119.
  mla: Chatterjee, Krishnendu, et al. “Finite-Memory Strategies in POMDPs with Long-Run
    Average Objectives.” <i>Mathematics of Operations Research</i>, vol. 47, no. 1,
    Institute for Operations Research and the Management Sciences, 2022, pp. 100–19,
    doi:<a href="https://doi.org/10.1287/moor.2020.1116">10.1287/moor.2020.1116</a>.
  short: K. Chatterjee, R.J. Saona Urmeneta, B. Ziliotto, Mathematics of Operations
    Research 47 (2022) 100–119.
date_created: 2021-04-08T09:33:31Z
date_published: 2022-02-01T00:00:00Z
date_updated: 2023-09-05T13:16:11Z
day: '01'
department:
- _id: GradSch
- _id: KrCh
doi: 10.1287/moor.2020.1116
external_id:
  arxiv:
  - '1904.13360'
  isi:
  - '000731918100001'
intvolume: '        47'
isi: 1
issue: '1'
keyword:
- Management Science and Operations Research
- General Mathematics
- Computer Science Applications
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1904.13360
month: '02'
oa: 1
oa_version: Preprint
page: 100-119
project:
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
publication: Mathematics of Operations Research
publication_identifier:
  eissn:
  - 1526-5471
  issn:
  - 0364-765X
publication_status: published
publisher: Institute for Operations Research and the Management Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Finite-memory strategies in POMDPs with long-run average objectives
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 47
year: '2022'
...
---
_id: '9364'
abstract:
- lang: eng
  text: 'Let t : Fp → C be a complex valued function on Fp. A classical problem in
    analytic number theory is bounding the maximum M(t) := max 0≤H<p ∣ 1/√p ∑ 0≤n<H
    t (n) ∣ of the absolute value of the incomplete sums(1/√p)∑0≤n<H t (n). In this
    very general context one of the most important results is the Pólya–Vinogradov
    bound M(t)≤IIˆtII∞ log 3p, where ˆt : Fp → C is the normalized Fourier transform
    of t. In this paper we provide a lower bound for certain incomplete Kloosterman
    sums, namely we prove that for any ε > 0 there exists a large subset of a ∈ F×p
    such that for kl a,1,p : x → e((ax+x) / p) we have M(kla,1,p) ≥ (1−ε/√2π + o(1))
    log log p, as p→∞. Finally, we prove a result on the growth of the moments of
    {M (kla,1,p)}a∈F×p. 2020 Mathematics Subject Classification: 11L03, 11T23 (Primary);
    14F20, 60F10 (Secondary).'
acknowledgement: I am most thankful to my advisor, Emmanuel Kowalski, for suggesting
  this problem and for his guidance during these years. I also would like to thank
  Youness Lamzouri for informing me about his work on sum of incomplete Birch sums
  and Tal Horesh for her suggestions on a previous version of the paper. Finally,
  I am very grateful to the anonymous referee for their careful reading of the manuscript
  and their valuable comments.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Dante
  full_name: Bonolis, Dante
  id: 6A459894-5FDD-11E9-AF35-BB24E6697425
  last_name: Bonolis
citation:
  ama: Bonolis D. On the size of the maximum of incomplete Kloosterman sums. <i>Mathematical
    Proceedings of the Cambridge Philosophical Society</i>. 2022;172(3):563-590. doi:<a
    href="https://doi.org/10.1017/S030500412100030X">10.1017/S030500412100030X</a>
  apa: Bonolis, D. (2022). On the size of the maximum of incomplete Kloosterman sums.
    <i>Mathematical Proceedings of the Cambridge Philosophical Society</i>. Cambridge
    University Press. <a href="https://doi.org/10.1017/S030500412100030X">https://doi.org/10.1017/S030500412100030X</a>
  chicago: Bonolis, Dante. “On the Size of the Maximum of Incomplete Kloosterman Sums.”
    <i>Mathematical Proceedings of the Cambridge Philosophical Society</i>. Cambridge
    University Press, 2022. <a href="https://doi.org/10.1017/S030500412100030X">https://doi.org/10.1017/S030500412100030X</a>.
  ieee: D. Bonolis, “On the size of the maximum of incomplete Kloosterman sums,” <i>Mathematical
    Proceedings of the Cambridge Philosophical Society</i>, vol. 172, no. 3. Cambridge
    University Press, pp. 563–590, 2022.
  ista: Bonolis D. 2022. On the size of the maximum of incomplete Kloosterman sums.
    Mathematical Proceedings of the Cambridge Philosophical Society. 172(3), 563–590.
  mla: Bonolis, Dante. “On the Size of the Maximum of Incomplete Kloosterman Sums.”
    <i>Mathematical Proceedings of the Cambridge Philosophical Society</i>, vol. 172,
    no. 3, Cambridge University Press, 2022, pp. 563–90, doi:<a href="https://doi.org/10.1017/S030500412100030X">10.1017/S030500412100030X</a>.
  short: D. Bonolis, Mathematical Proceedings of the Cambridge Philosophical Society
    172 (2022) 563–590.
date_created: 2021-05-02T22:01:29Z
date_published: 2022-05-01T00:00:00Z
date_updated: 2023-08-02T06:47:48Z
day: '01'
ddc:
- '510'
department:
- _id: TiBr
doi: 10.1017/S030500412100030X
external_id:
  arxiv:
  - '1811.10563'
  isi:
  - '000784421500001'
file:
- access_level: open_access
  checksum: 614d2e9b83a78100408e4ee7752a80a8
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-12-01T14:01:54Z
  date_updated: 2021-12-01T14:01:54Z
  file_id: '10395'
  file_name: 2021_MathProcCamPhilSoc_Bonolis.pdf
  file_size: 334064
  relation: main_file
  success: 1
file_date_updated: 2021-12-01T14:01:54Z
has_accepted_license: '1'
intvolume: '       172'
isi: 1
issue: '3'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 563 - 590
publication: Mathematical Proceedings of the Cambridge Philosophical Society
publication_identifier:
  eissn:
  - 1469-8064
  issn:
  - 0305-0041
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the size of the maximum of incomplete Kloosterman sums
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 172
year: '2022'
...
---
_id: '7577'
abstract:
- lang: eng
  text: Weak convergence of inertial iterative method for solving variational inequalities
    is the focus of this paper. The cost function is assumed to be non-Lipschitz and
    monotone. We propose a projection-type method with inertial terms and give weak
    convergence analysis under appropriate conditions. Some test results are performed
    and compared with relevant methods in the literature to show the efficiency and
    advantages given by our proposed methods.
acknowledgement: The project of the first author has received funding from the European
  Research Council (ERC) under the European Union's Seventh Framework Program (FP7
  - 2007-2013) (Grant agreement No. 616160).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Yekini
  full_name: Shehu, Yekini
  id: 3FC7CB58-F248-11E8-B48F-1D18A9856A87
  last_name: Shehu
  orcid: 0000-0001-9224-7139
- first_name: Olaniyi S.
  full_name: Iyiola, Olaniyi S.
  last_name: Iyiola
citation:
  ama: Shehu Y, Iyiola OS. Weak convergence for variational inequalities with inertial-type
    method. <i>Applicable Analysis</i>. 2022;101(1):192-216. doi:<a href="https://doi.org/10.1080/00036811.2020.1736287">10.1080/00036811.2020.1736287</a>
  apa: Shehu, Y., &#38; Iyiola, O. S. (2022). Weak convergence for variational inequalities
    with inertial-type method. <i>Applicable Analysis</i>. Taylor &#38; Francis. <a
    href="https://doi.org/10.1080/00036811.2020.1736287">https://doi.org/10.1080/00036811.2020.1736287</a>
  chicago: Shehu, Yekini, and Olaniyi S. Iyiola. “Weak Convergence for Variational
    Inequalities with Inertial-Type Method.” <i>Applicable Analysis</i>. Taylor &#38;
    Francis, 2022. <a href="https://doi.org/10.1080/00036811.2020.1736287">https://doi.org/10.1080/00036811.2020.1736287</a>.
  ieee: Y. Shehu and O. S. Iyiola, “Weak convergence for variational inequalities
    with inertial-type method,” <i>Applicable Analysis</i>, vol. 101, no. 1. Taylor
    &#38; Francis, pp. 192–216, 2022.
  ista: Shehu Y, Iyiola OS. 2022. Weak convergence for variational inequalities with
    inertial-type method. Applicable Analysis. 101(1), 192–216.
  mla: Shehu, Yekini, and Olaniyi S. Iyiola. “Weak Convergence for Variational Inequalities
    with Inertial-Type Method.” <i>Applicable Analysis</i>, vol. 101, no. 1, Taylor
    &#38; Francis, 2022, pp. 192–216, doi:<a href="https://doi.org/10.1080/00036811.2020.1736287">10.1080/00036811.2020.1736287</a>.
  short: Y. Shehu, O.S. Iyiola, Applicable Analysis 101 (2022) 192–216.
date_created: 2020-03-09T07:06:52Z
date_published: 2022-01-01T00:00:00Z
date_updated: 2024-03-05T14:01:52Z
day: '01'
ddc:
- '510'
- '515'
- '518'
department:
- _id: VlKo
doi: 10.1080/00036811.2020.1736287
ec_funded: 1
external_id:
  arxiv:
  - '2101.08057'
  isi:
  - '000518364100001'
file:
- access_level: open_access
  checksum: 869efe8cb09505dfa6012f67d20db63d
  content_type: application/pdf
  creator: dernst
  date_created: 2020-10-12T10:42:54Z
  date_updated: 2021-03-16T23:30:06Z
  embargo: 2021-03-15
  file_id: '8648'
  file_name: 2020_ApplicAnalysis_Shehu.pdf
  file_size: 4282586
  relation: main_file
file_date_updated: 2021-03-16T23:30:06Z
has_accepted_license: '1'
intvolume: '       101'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Submitted Version
page: 192-216
project:
- _id: 25FBA906-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '616160'
  name: 'Discrete Optimization in Computer Vision: Theory and Practice'
publication: Applicable Analysis
publication_identifier:
  eissn:
  - 1563-504X
  issn:
  - 0003-6811
publication_status: published
publisher: Taylor & Francis
quality_controlled: '1'
scopus_import: '1'
status: public
title: Weak convergence for variational inequalities with inertial-type method
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 101
year: '2022'
...
---
_id: '7791'
abstract:
- lang: eng
  text: Extending a result of Milena Radnovic and Serge Tabachnikov, we establish
    conditionsfor two different non-symmetric norms to define the same billiard reflection
    law.
acknowledgement: AA was supported by European Research Council (ERC) under the European
  Union’s Horizon 2020 research and innovation programme (Grant Agreement No. 78818
  Alpha). RK was supported by the Federal professorship program Grant 1.456.2016/1.4
  and the Russian Foundation for Basic Research Grants 18-01-00036 and 19-01-00169.
  Open access funding provided by Institute of Science and Technology (IST Austria).
  The authors thank Alexey Balitskiy, Milena Radnović, and Serge Tabachnikov for useful
  discussions.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Roman
  full_name: Karasev, Roman
  last_name: Karasev
citation:
  ama: Akopyan A, Karasev R. When different norms lead to same billiard trajectories?
    <i>European Journal of Mathematics</i>. 2022;8(4):1309-1312. doi:<a href="https://doi.org/10.1007/s40879-020-00405-0">10.1007/s40879-020-00405-0</a>
  apa: Akopyan, A., &#38; Karasev, R. (2022). When different norms lead to same billiard
    trajectories? <i>European Journal of Mathematics</i>. Springer Nature. <a href="https://doi.org/10.1007/s40879-020-00405-0">https://doi.org/10.1007/s40879-020-00405-0</a>
  chicago: Akopyan, Arseniy, and Roman Karasev. “When Different Norms Lead to Same
    Billiard Trajectories?” <i>European Journal of Mathematics</i>. Springer Nature,
    2022. <a href="https://doi.org/10.1007/s40879-020-00405-0">https://doi.org/10.1007/s40879-020-00405-0</a>.
  ieee: A. Akopyan and R. Karasev, “When different norms lead to same billiard trajectories?,”
    <i>European Journal of Mathematics</i>, vol. 8, no. 4. Springer Nature, pp. 1309–1312,
    2022.
  ista: Akopyan A, Karasev R. 2022. When different norms lead to same billiard trajectories?
    European Journal of Mathematics. 8(4), 1309–1312.
  mla: Akopyan, Arseniy, and Roman Karasev. “When Different Norms Lead to Same Billiard
    Trajectories?” <i>European Journal of Mathematics</i>, vol. 8, no. 4, Springer
    Nature, 2022, pp. 1309–12, doi:<a href="https://doi.org/10.1007/s40879-020-00405-0">10.1007/s40879-020-00405-0</a>.
  short: A. Akopyan, R. Karasev, European Journal of Mathematics 8 (2022) 1309–1312.
date_created: 2020-05-03T22:00:48Z
date_published: 2022-12-01T00:00:00Z
date_updated: 2024-02-22T15:58:42Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s40879-020-00405-0
ec_funded: 1
external_id:
  arxiv:
  - '1912.12685'
file:
- access_level: open_access
  checksum: f53e71fd03744075adcd0b8fc1b8423d
  content_type: application/pdf
  creator: dernst
  date_created: 2020-05-04T10:33:42Z
  date_updated: 2020-07-14T12:48:03Z
  file_id: '7796'
  file_name: 2020_EuropMathematics_Akopyan.pdf
  file_size: 263926
  relation: main_file
file_date_updated: 2020-07-14T12:48:03Z
has_accepted_license: '1'
intvolume: '         8'
issue: '4'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 1309 - 1312
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: European Journal of Mathematics
publication_identifier:
  eissn:
  - 2199-6768
  issn:
  - 2199-675X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: When different norms lead to same billiard trajectories?
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2022'
...
---
_id: '8125'
abstract:
- lang: eng
  text: Context, such as behavioral state, is known to modulate memory formation and
    retrieval, but is usually ignored in associative memory models. Here, we propose
    several types of contextual modulation for associative memory networks that greatly
    increase their performance. In these networks, context inactivates specific neurons
    and connections, which modulates the effective connectivity of the network. Memories
    are stored only by the active components, thereby reducing interference from memories
    acquired in other contexts. Such networks exhibit several beneficial characteristics,
    including enhanced memory capacity, high robustness to noise, increased robustness
    to memory overloading, and better memory retention during continual learning.
    Furthermore, memories can be biased to have different relative strengths, or even
    gated on or off, according to contextual cues, providing a candidate model for
    cognitive control of memory and efficient memory search. An external context-encoding
    network can dynamically switch the memory network to a desired state, which we
    liken to experimentally observed contextual signals in prefrontal cortex and hippocampus.
    Overall, our work illustrates the benefits of organizing memory around context,
    and provides an important link between behavioral studies of memory and mechanistic
    details of neural circuits.</jats:p><jats:sec><jats:title>SIGNIFICANCE</jats:title><jats:p>Memory
    is context dependent — both encoding and recall vary in effectiveness and speed
    depending on factors like location and brain state during a task. We apply this
    idea to a simple computational model of associative memory through contextual
    gating of neurons and synaptic connections. Intriguingly, this results in several
    advantages, including vastly enhanced memory capacity, better robustness, and
    flexible memory gating. Our model helps to explain (i) how gating and inhibition
    contribute to memory processes, (ii) how memory access dynamically changes over
    time, and (iii) how context representations, such as those observed in hippocampus
    and prefrontal cortex, may interact with and control memory processes.
article_processing_charge: No
author:
- first_name: William F.
  full_name: Podlaski, William F.
  last_name: Podlaski
  orcid: 0000-0001-6619-7502
- first_name: Everton J.
  full_name: Agnes, Everton J.
  last_name: Agnes
  orcid: 0000-0001-7184-7311
- first_name: Tim P
  full_name: Vogels, Tim P
  id: CB6FF8D2-008F-11EA-8E08-2637E6697425
  last_name: Vogels
  orcid: 0000-0003-3295-6181
citation:
  ama: Podlaski WF, Agnes EJ, Vogels TP. High capacity and dynamic accessibility in
    associative memory networks with context-dependent neuronal and synaptic gating.
    <i>bioRxiv</i>. 2022. doi:<a href="https://doi.org/10.1101/2020.01.08.898528">10.1101/2020.01.08.898528</a>
  apa: Podlaski, W. F., Agnes, E. J., &#38; Vogels, T. P. (2022). High capacity and
    dynamic accessibility in associative memory networks with context-dependent neuronal
    and synaptic gating. <i>bioRxiv</i>. Cold Spring Harbor Laboratory. <a href="https://doi.org/10.1101/2020.01.08.898528">https://doi.org/10.1101/2020.01.08.898528</a>
  chicago: Podlaski, William F., Everton J. Agnes, and Tim P Vogels. “High Capacity
    and Dynamic Accessibility in Associative Memory Networks with Context-Dependent
    Neuronal and Synaptic Gating.” <i>BioRxiv</i>. Cold Spring Harbor Laboratory,
    2022. <a href="https://doi.org/10.1101/2020.01.08.898528">https://doi.org/10.1101/2020.01.08.898528</a>.
  ieee: W. F. Podlaski, E. J. Agnes, and T. P. Vogels, “High capacity and dynamic
    accessibility in associative memory networks with context-dependent neuronal and
    synaptic gating,” <i>bioRxiv</i>. Cold Spring Harbor Laboratory, 2022.
  ista: Podlaski WF, Agnes EJ, Vogels TP. 2022. High capacity and dynamic accessibility
    in associative memory networks with context-dependent neuronal and synaptic gating.
    bioRxiv, <a href="https://doi.org/10.1101/2020.01.08.898528">10.1101/2020.01.08.898528</a>.
  mla: Podlaski, William F., et al. “High Capacity and Dynamic Accessibility in Associative
    Memory Networks with Context-Dependent Neuronal and Synaptic Gating.” <i>BioRxiv</i>,
    Cold Spring Harbor Laboratory, 2022, doi:<a href="https://doi.org/10.1101/2020.01.08.898528">10.1101/2020.01.08.898528</a>.
  short: W.F. Podlaski, E.J. Agnes, T.P. Vogels, BioRxiv (2022).
date_created: 2020-07-16T12:24:28Z
date_published: 2022-12-21T00:00:00Z
date_updated: 2024-03-06T12:03:59Z
day: '21'
department:
- _id: TiVo
doi: 10.1101/2020.01.08.898528
language:
- iso: eng
locked: '1'
main_file_link:
- open_access: '1'
  url: 'https://doi.org/10.1101/2020.01.08.898528 '
month: '12'
oa: 1
oa_version: Preprint
publication: bioRxiv
publication_status: published
publisher: Cold Spring Harbor Laboratory
status: public
title: High capacity and dynamic accessibility in associative memory networks with
  context-dependent neuronal and synaptic gating
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '14216'
abstract:
- lang: eng
  text: CLIP proved that aligning visual and language spaces is key to solving many
    vision tasks without explicit training, but required to train image and text encoders
    from scratch on a huge dataset. LiT improved this by only training the text encoder
    and using a pre-trained vision network. In this paper, we show that a common space
    can be created without any training at all, using single-domain encoders (trained
    with or without supervision) and a much smaller amount of image-text pairs. Furthermore,
    our model has unique properties. Most notably, deploying a new version with updated
    training samples can be done in a matter of seconds. Additionally, the representations
    in the common space are easily interpretable as every dimension corresponds to
    the similarity of the input to a unique entry in the multimodal dataset. Experiments
    on standard zero-shot visual benchmarks demonstrate the typical transfer ability
    of image-text models. Overall, our method represents a simple yet surprisingly
    strong baseline for foundation multi-modal models, raising important questions
    on their data efficiency and on the role of retrieval in machine learning.
article_number: '2210.01738'
article_processing_charge: No
arxiv: 1
author:
- first_name: Antonio
  full_name: Norelli, Antonio
  last_name: Norelli
- first_name: Marco
  full_name: Fumero, Marco
  last_name: Fumero
- first_name: Valentino
  full_name: Maiorca, Valentino
  last_name: Maiorca
- first_name: Luca
  full_name: Moschella, Luca
  last_name: Moschella
- first_name: Emanuele
  full_name: Rodolà, Emanuele
  last_name: Rodolà
- first_name: Francesco
  full_name: Locatello, Francesco
  id: 26cfd52f-2483-11ee-8040-88983bcc06d4
  last_name: Locatello
  orcid: 0000-0002-4850-0683
citation:
  ama: 'Norelli A, Fumero M, Maiorca V, Moschella L, Rodolà E, Locatello F. ASIF:
    Coupled data turns unimodal models to multimodal without training. <i>arXiv</i>.
    doi:<a href="https://doi.org/10.48550/arXiv.2210.01738">10.48550/arXiv.2210.01738</a>'
  apa: 'Norelli, A., Fumero, M., Maiorca, V., Moschella, L., Rodolà, E., &#38; Locatello,
    F. (n.d.). ASIF: Coupled data turns unimodal models to multimodal without training.
    <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2210.01738">https://doi.org/10.48550/arXiv.2210.01738</a>'
  chicago: 'Norelli, Antonio, Marco Fumero, Valentino Maiorca, Luca Moschella, Emanuele
    Rodolà, and Francesco Locatello. “ASIF: Coupled Data Turns Unimodal Models to
    Multimodal without Training.” <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2210.01738">https://doi.org/10.48550/arXiv.2210.01738</a>.'
  ieee: 'A. Norelli, M. Fumero, V. Maiorca, L. Moschella, E. Rodolà, and F. Locatello,
    “ASIF: Coupled data turns unimodal models to multimodal without training,” <i>arXiv</i>.
    .'
  ista: 'Norelli A, Fumero M, Maiorca V, Moschella L, Rodolà E, Locatello F. ASIF:
    Coupled data turns unimodal models to multimodal without training. arXiv, 2210.01738.'
  mla: 'Norelli, Antonio, et al. “ASIF: Coupled Data Turns Unimodal Models to Multimodal
    without Training.” <i>ArXiv</i>, 2210.01738, doi:<a href="https://doi.org/10.48550/arXiv.2210.01738">10.48550/arXiv.2210.01738</a>.'
  short: A. Norelli, M. Fumero, V. Maiorca, L. Moschella, E. Rodolà, F. Locatello,
    ArXiv (n.d.).
date_created: 2023-08-22T14:22:04Z
date_published: 2022-10-04T00:00:00Z
date_updated: 2024-02-12T09:57:14Z
day: '04'
department:
- _id: FrLo
doi: 10.48550/arXiv.2210.01738
external_id:
  arxiv:
  - '2210.01738'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2210.01738
month: '10'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
status: public
title: 'ASIF: Coupled data turns unimodal models to multimodal without training'
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '14381'
abstract:
- lang: eng
  text: Expander graphs (sparse but highly connected graphs) have, since their inception,
    been the source of deep links between Mathematics and Computer Science as well
    as applications to other areas. In recent years, a fascinating theory of high-dimensional
    expanders has begun to emerge, which is still in a formative stage but has nonetheless
    already lead to a number of striking results. Unlike for graphs, in higher dimensions
    there is a rich array of non-equivalent notions of expansion (coboundary expansion,
    cosystolic expansion, topological expansion, spectral expansion, etc.), with differents
    strengths and applications. In this talk, we will survey this landscape of high-dimensional
    expansion, with a focus on two main results. First, we will present Gromov’s Topological
    Overlap Theorem, which asserts that coboundary expansion (a quantitative version
    of vanishing mod 2 cohomology) implies topological expansion (roughly, the property
    that for every map from a simplicial complex to a manifold of the same dimension,
    the images of a positive fraction of the simplices have a point in common). Second,
    we will outline a construction of bounded degree 2-dimensional topological expanders,
    due to Kaufman, Kazhdan, and Lubotzky.
article_processing_charge: No
article_type: original
author:
- first_name: Uli
  full_name: Wagner, Uli
  id: 36690CA2-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
  orcid: 0000-0002-1494-0568
citation:
  ama: Wagner U. High-dimensional expanders (after Gromov, Kaufman, Kazhdan, Lubotzky,
    and others). <i>Bulletin de la Societe Mathematique de France</i>. 2022;438:281-294.
    doi:<a href="https://doi.org/10.24033/ast.1188">10.24033/ast.1188</a>
  apa: Wagner, U. (2022). High-dimensional expanders (after Gromov, Kaufman, Kazhdan,
    Lubotzky, and others). <i>Bulletin de La Societe Mathematique de France</i>. Societe
    Mathematique de France. <a href="https://doi.org/10.24033/ast.1188">https://doi.org/10.24033/ast.1188</a>
  chicago: Wagner, Uli. “High-Dimensional Expanders (after Gromov, Kaufman, Kazhdan,
    Lubotzky, and Others).” <i>Bulletin de La Societe Mathematique de France</i>.
    Societe Mathematique de France, 2022. <a href="https://doi.org/10.24033/ast.1188">https://doi.org/10.24033/ast.1188</a>.
  ieee: U. Wagner, “High-dimensional expanders (after Gromov, Kaufman, Kazhdan, Lubotzky,
    and others),” <i>Bulletin de la Societe Mathematique de France</i>, vol. 438.
    Societe Mathematique de France, pp. 281–294, 2022.
  ista: Wagner U. 2022. High-dimensional expanders (after Gromov, Kaufman, Kazhdan,
    Lubotzky, and others). Bulletin de la Societe Mathematique de France. 438, 281–294.
  mla: Wagner, Uli. “High-Dimensional Expanders (after Gromov, Kaufman, Kazhdan, Lubotzky,
    and Others).” <i>Bulletin de La Societe Mathematique de France</i>, vol. 438,
    Societe Mathematique de France, 2022, pp. 281–94, doi:<a href="https://doi.org/10.24033/ast.1188">10.24033/ast.1188</a>.
  short: U. Wagner, Bulletin de La Societe Mathematique de France 438 (2022) 281–294.
date_created: 2023-10-01T22:01:14Z
date_published: 2022-01-01T00:00:00Z
date_updated: 2023-10-03T08:04:03Z
day: '01'
department:
- _id: UlWa
doi: 10.24033/ast.1188
intvolume: '       438'
language:
- iso: eng
month: '01'
oa_version: None
page: 281-294
publication: Bulletin de la Societe Mathematique de France
publication_identifier:
  eissn:
  - 2102-622X
  issn:
  - 0037-9484
publication_status: published
publisher: Societe Mathematique de France
quality_controlled: '1'
scopus_import: '1'
status: public
title: High-dimensional expanders (after Gromov, Kaufman, Kazhdan, Lubotzky, and others)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 438
year: '2022'
...
---
_id: '14437'
abstract:
- lang: eng
  text: Future LEDs could be based on lead halide perovskites. A breakthrough in preparing
    device-compatible solids composed of nanoscale perovskite crystals overcomes a
    long-standing hurdle in making blue perovskite LEDs.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Hendrik
  full_name: Utzat, Hendrik
  last_name: Utzat
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
citation:
  ama: Utzat H, Ibáñez M. Molecular engineering enables bright blue LEDs. <i>Nature</i>.
    2022;612(7941):638-639. doi:<a href="https://doi.org/10.1038/d41586-022-04447-0">10.1038/d41586-022-04447-0</a>
  apa: Utzat, H., &#38; Ibáñez, M. (2022). Molecular engineering enables bright blue
    LEDs. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/d41586-022-04447-0">https://doi.org/10.1038/d41586-022-04447-0</a>
  chicago: Utzat, Hendrik, and Maria Ibáñez. “Molecular Engineering Enables Bright
    Blue LEDs.” <i>Nature</i>. Springer Nature, 2022. <a href="https://doi.org/10.1038/d41586-022-04447-0">https://doi.org/10.1038/d41586-022-04447-0</a>.
  ieee: H. Utzat and M. Ibáñez, “Molecular engineering enables bright blue LEDs,”
    <i>Nature</i>, vol. 612, no. 7941. Springer Nature, pp. 638–639, 2022.
  ista: Utzat H, Ibáñez M. 2022. Molecular engineering enables bright blue LEDs. Nature.
    612(7941), 638–639.
  mla: Utzat, Hendrik, and Maria Ibáñez. “Molecular Engineering Enables Bright Blue
    LEDs.” <i>Nature</i>, vol. 612, no. 7941, Springer Nature, 2022, pp. 638–39, doi:<a
    href="https://doi.org/10.1038/d41586-022-04447-0">10.1038/d41586-022-04447-0</a>.
  short: H. Utzat, M. Ibáñez, Nature 612 (2022) 638–639.
date_created: 2023-10-17T11:14:43Z
date_published: 2022-12-21T00:00:00Z
date_updated: 2023-10-18T06:26:30Z
day: '21'
department:
- _id: MaIb
doi: 10.1038/d41586-022-04447-0
external_id:
  pmid:
  - '36543947'
intvolume: '       612'
issue: '7941'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '12'
oa_version: None
page: 638-639
pmid: 1
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Molecular engineering enables bright blue LEDs
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 612
year: '2022'
...
---
_id: '14520'
abstract:
- lang: eng
  text: 'This dataset comprises all data shown in the figures of the submitted article
    "Compact vacuum gap transmon qubits: Selective and sensitive probes for superconductor
    surface losses" at arxiv.org/abs/2206.14104. Additional raw data are available
    from the corresponding author on reasonable request.'
article_processing_charge: No
author:
- first_name: Martin
  full_name: Zemlicka, Martin
  id: 2DCF8DE6-F248-11E8-B48F-1D18A9856A87
  last_name: Zemlicka
- first_name: Elena
  full_name: Redchenko, Elena
  id: 2C21D6E8-F248-11E8-B48F-1D18A9856A87
  last_name: Redchenko
- first_name: Matilda
  full_name: Peruzzo, Matilda
  id: 3F920B30-F248-11E8-B48F-1D18A9856A87
  last_name: Peruzzo
  orcid: 0000-0002-3415-4628
- first_name: Farid
  full_name: Hassani, Farid
  id: 2AED110C-F248-11E8-B48F-1D18A9856A87
  last_name: Hassani
  orcid: 0000-0001-6937-5773
- first_name: Andrea
  full_name: Trioni, Andrea
  id: 42F71B44-F248-11E8-B48F-1D18A9856A87
  last_name: Trioni
- first_name: Shabir
  full_name: Barzanjeh, Shabir
  id: 2D25E1F6-F248-11E8-B48F-1D18A9856A87
  last_name: Barzanjeh
  orcid: 0000-0003-0415-1423
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
citation:
  ama: 'Zemlicka M, Redchenko E, Peruzzo M, et al. Compact vacuum gap transmon qubits:
    Selective and sensitive probes for superconductor surface losses. 2022. doi:<a
    href="https://doi.org/10.5281/ZENODO.8408897">10.5281/ZENODO.8408897</a>'
  apa: 'Zemlicka, M., Redchenko, E., Peruzzo, M., Hassani, F., Trioni, A., Barzanjeh,
    S., &#38; Fink, J. M. (2022). Compact vacuum gap transmon qubits: Selective and
    sensitive probes for superconductor surface losses. Zenodo. <a href="https://doi.org/10.5281/ZENODO.8408897">https://doi.org/10.5281/ZENODO.8408897</a>'
  chicago: 'Zemlicka, Martin, Elena Redchenko, Matilda Peruzzo, Farid Hassani, Andrea
    Trioni, Shabir Barzanjeh, and Johannes M Fink. “Compact Vacuum Gap Transmon Qubits:
    Selective and Sensitive Probes for Superconductor Surface Losses.” Zenodo, 2022.
    <a href="https://doi.org/10.5281/ZENODO.8408897">https://doi.org/10.5281/ZENODO.8408897</a>.'
  ieee: 'M. Zemlicka <i>et al.</i>, “Compact vacuum gap transmon qubits: Selective
    and sensitive probes for superconductor surface losses.” Zenodo, 2022.'
  ista: 'Zemlicka M, Redchenko E, Peruzzo M, Hassani F, Trioni A, Barzanjeh S, Fink
    JM. 2022. Compact vacuum gap transmon qubits: Selective and sensitive probes for
    superconductor surface losses, Zenodo, <a href="https://doi.org/10.5281/ZENODO.8408897">10.5281/ZENODO.8408897</a>.'
  mla: 'Zemlicka, Martin, et al. <i>Compact Vacuum Gap Transmon Qubits: Selective
    and Sensitive Probes for Superconductor Surface Losses</i>. Zenodo, 2022, doi:<a
    href="https://doi.org/10.5281/ZENODO.8408897">10.5281/ZENODO.8408897</a>.'
  short: M. Zemlicka, E. Redchenko, M. Peruzzo, F. Hassani, A. Trioni, S. Barzanjeh,
    J.M. Fink, (2022).
date_created: 2023-11-13T08:09:10Z
date_published: 2022-06-28T00:00:00Z
date_updated: 2024-09-10T12:23:57Z
day: '28'
ddc:
- '530'
department:
- _id: JoFi
doi: 10.5281/ZENODO.8408897
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/ZENODO.8408897
month: '06'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
  record:
  - id: '14517'
    relation: used_in_publication
    status: public
status: public
title: 'Compact vacuum gap transmon qubits: Selective and sensitive probes for superconductor
  surface losses'
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
  name: Creative Commons Public Domain Dedication (CC0 1.0)
  short: CC0 (1.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '14597'
abstract:
- lang: eng
  text: "Phase-field models such as the Allen-Cahn equation may give rise to the formation
    and evolution of geometric shapes, a phenomenon that may be analyzed rigorously
    in suitable scaling regimes. In its sharp-interface limit, the vectorial Allen-Cahn
    equation with a potential with N≥3 distinct minima has been conjectured to describe
    the evolution of branched interfaces by multiphase mean curvature flow.\r\nIn
    the present work, we give a rigorous proof for this statement in two and three
    ambient dimensions and for a suitable class of potentials: As long as a strong
    solution to multiphase mean curvature flow exists, solutions to the vectorial
    Allen-Cahn equation with well-prepared initial data converge towards multiphase
    mean curvature flow in the limit of vanishing interface width parameter ε↘0. We
    even establish the rate of convergence O(ε1/2).\r\nOur approach is based on the
    gradient flow structure of the Allen-Cahn equation and its limiting motion: Building
    on the recent concept of \"gradient flow calibrations\" for multiphase mean curvature
    flow, we introduce a notion of relative entropy for the vectorial Allen-Cahn equation
    with multi-well potential. This enables us to overcome the limitations of other
    approaches, e.g. avoiding the need for a stability analysis of the Allen-Cahn
    operator or additional convergence hypotheses for the energy at positive times."
article_processing_charge: No
arxiv: 1
author:
- first_name: Julian L
  full_name: Fischer, Julian L
  id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
  last_name: Fischer
  orcid: 0000-0002-0479-558X
- first_name: Alice
  full_name: Marveggio, Alice
  id: 25647992-AA84-11E9-9D75-8427E6697425
  last_name: Marveggio
citation:
  ama: Fischer JL, Marveggio A. Quantitative convergence of the vectorial Allen-Cahn
    equation towards multiphase mean curvature flow. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/ARXIV.2203.17143">10.48550/ARXIV.2203.17143</a>
  apa: Fischer, J. L., &#38; Marveggio, A. (n.d.). Quantitative convergence of the
    vectorial Allen-Cahn equation towards multiphase mean curvature flow. <i>arXiv</i>.
    <a href="https://doi.org/10.48550/ARXIV.2203.17143">https://doi.org/10.48550/ARXIV.2203.17143</a>
  chicago: Fischer, Julian L, and Alice Marveggio. “Quantitative Convergence of the
    Vectorial Allen-Cahn Equation towards Multiphase Mean Curvature Flow.” <i>ArXiv</i>,
    n.d. <a href="https://doi.org/10.48550/ARXIV.2203.17143">https://doi.org/10.48550/ARXIV.2203.17143</a>.
  ieee: J. L. Fischer and A. Marveggio, “Quantitative convergence of the vectorial
    Allen-Cahn equation towards multiphase mean curvature flow,” <i>arXiv</i>. .
  ista: Fischer JL, Marveggio A. Quantitative convergence of the vectorial Allen-Cahn
    equation towards multiphase mean curvature flow. arXiv, <a href="https://doi.org/10.48550/ARXIV.2203.17143">10.48550/ARXIV.2203.17143</a>.
  mla: Fischer, Julian L., and Alice Marveggio. “Quantitative Convergence of the Vectorial
    Allen-Cahn Equation towards Multiphase Mean Curvature Flow.” <i>ArXiv</i>, doi:<a
    href="https://doi.org/10.48550/ARXIV.2203.17143">10.48550/ARXIV.2203.17143</a>.
  short: J.L. Fischer, A. Marveggio, ArXiv (n.d.).
date_created: 2023-11-23T09:30:02Z
date_published: 2022-03-31T00:00:00Z
date_updated: 2023-11-30T13:25:02Z
day: '31'
department:
- _id: JuFi
doi: 10.48550/ARXIV.2203.17143
ec_funded: 1
external_id:
  arxiv:
  - '2203.17143'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2203.17143
month: '03'
oa: 1
oa_version: Preprint
project:
- _id: 0aa76401-070f-11eb-9043-b5bb049fa26d
  call_identifier: H2020
  grant_number: '948819'
  name: Bridging Scales in Random Materials
publication: arXiv
publication_status: submitted
related_material:
  record:
  - id: '14587'
    relation: dissertation_contains
    status: public
status: public
title: Quantitative convergence of the vectorial Allen-Cahn equation towards multiphase
  mean curvature flow
type: preprint
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2022'
...
---
_id: '14600'
abstract:
- lang: eng
  text: We study the problem of learning controllers for discrete-time non-linear
    stochastic dynamical systems with formal reach-avoid guarantees. This work presents
    the first method for providing formal reach-avoid guarantees, which combine and
    generalize stability and safety guarantees, with a tolerable probability threshold
    $p\in[0,1]$ over the infinite time horizon. Our method leverages advances in machine
    learning literature and it represents formal certificates as neural networks.
    In particular, we learn a certificate in the form of a reach-avoid supermartingale
    (RASM), a novel notion that we introduce in this work. Our RASMs provide reachability
    and avoidance guarantees by imposing constraints on what can be viewed as a stochastic
    extension of level sets of Lyapunov functions for deterministic systems. Our approach
    solves several important problems -- it can be used to learn a control policy
    from scratch, to verify a reach-avoid specification for a fixed control policy,
    or to fine-tune a pre-trained policy if it does not satisfy the reach-avoid specification.
    We validate our approach on $3$ stochastic non-linear reinforcement learning tasks.
article_processing_charge: No
arxiv: 1
author:
- first_name: Dorde
  full_name: Zikelic, Dorde
  id: 294AA7A6-F248-11E8-B48F-1D18A9856A87
  last_name: Zikelic
  orcid: 0000-0002-4681-1699
- first_name: Mathias
  full_name: Lechner, Mathias
  id: 3DC22916-F248-11E8-B48F-1D18A9856A87
  last_name: Lechner
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
citation:
  ama: Zikelic D, Lechner M, Henzinger TA, Chatterjee K. Learning control policies
    for stochastic systems with reach-avoid guarantees. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/ARXIV.2210.05308">10.48550/ARXIV.2210.05308</a>
  apa: Zikelic, D., Lechner, M., Henzinger, T. A., &#38; Chatterjee, K. (n.d.). Learning
    control policies for stochastic systems with reach-avoid guarantees. <i>arXiv</i>.
    <a href="https://doi.org/10.48550/ARXIV.2210.05308">https://doi.org/10.48550/ARXIV.2210.05308</a>
  chicago: Zikelic, Dorde, Mathias Lechner, Thomas A Henzinger, and Krishnendu Chatterjee.
    “Learning Control Policies for Stochastic Systems with Reach-Avoid Guarantees.”
    <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/ARXIV.2210.05308">https://doi.org/10.48550/ARXIV.2210.05308</a>.
  ieee: D. Zikelic, M. Lechner, T. A. Henzinger, and K. Chatterjee, “Learning control
    policies for stochastic systems with reach-avoid guarantees,” <i>arXiv</i>. .
  ista: Zikelic D, Lechner M, Henzinger TA, Chatterjee K. Learning control policies
    for stochastic systems with reach-avoid guarantees. arXiv, <a href="https://doi.org/10.48550/ARXIV.2210.05308">10.48550/ARXIV.2210.05308</a>.
  mla: Zikelic, Dorde, et al. “Learning Control Policies for Stochastic Systems with
    Reach-Avoid Guarantees.” <i>ArXiv</i>, doi:<a href="https://doi.org/10.48550/ARXIV.2210.05308">10.48550/ARXIV.2210.05308</a>.
  short: D. Zikelic, M. Lechner, T.A. Henzinger, K. Chatterjee, ArXiv (n.d.).
date_created: 2023-11-24T13:10:09Z
date_published: 2022-11-29T00:00:00Z
date_updated: 2025-07-14T09:10:02Z
day: '29'
department:
- _id: KrCh
- _id: ToHe
doi: 10.48550/ARXIV.2210.05308
ec_funded: 1
external_id:
  arxiv:
  - '2210.05308'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-sa/4.0/
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2210.05308
month: '11'
oa: 1
oa_version: Preprint
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: arXiv
publication_status: submitted
related_material:
  record:
  - id: '14539'
    relation: dissertation_contains
    status: public
  - id: '14830'
    relation: later_version
    status: public
status: public
title: Learning control policies for stochastic systems with reach-avoid guarantees
tmp:
  image: /images/cc_by_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-sa/4.0/legalcode
  name: Creative Commons Attribution-ShareAlike 4.0 International Public License (CC
    BY-SA 4.0)
  short: CC BY-SA (4.0)
type: preprint
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2022'
...
---
_id: '14601'
abstract:
- lang: eng
  text: "In this work, we address the problem of learning provably stable neural\r\nnetwork
    policies for stochastic control systems. While recent work has\r\ndemonstrated
    the feasibility of certifying given policies using martingale\r\ntheory, the problem
    of how to learn such policies is little explored. Here, we\r\nstudy the effectiveness
    of jointly learning a policy together with a martingale\r\ncertificate that proves
    its stability using a single learning algorithm. We\r\nobserve that the joint
    optimization problem becomes easily stuck in local\r\nminima when starting from
    a randomly initialized policy. Our results suggest\r\nthat some form of pre-training
    of the policy is required for the joint\r\noptimization to repair and verify the
    policy successfully."
article_processing_charge: No
arxiv: 1
author:
- first_name: Dorde
  full_name: Zikelic, Dorde
  id: 294AA7A6-F248-11E8-B48F-1D18A9856A87
  last_name: Zikelic
  orcid: 0000-0002-4681-1699
- first_name: Mathias
  full_name: Lechner, Mathias
  id: 3DC22916-F248-11E8-B48F-1D18A9856A87
  last_name: Lechner
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
citation:
  ama: Zikelic D, Lechner M, Chatterjee K, Henzinger TA. Learning stabilizing policies
    in stochastic control systems. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2205.11991">10.48550/arXiv.2205.11991</a>
  apa: Zikelic, D., Lechner, M., Chatterjee, K., &#38; Henzinger, T. A. (n.d.). Learning
    stabilizing policies in stochastic control systems. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2205.11991">https://doi.org/10.48550/arXiv.2205.11991</a>
  chicago: Zikelic, Dorde, Mathias Lechner, Krishnendu Chatterjee, and Thomas A Henzinger.
    “Learning Stabilizing Policies in Stochastic Control Systems.” <i>ArXiv</i>, n.d.
    <a href="https://doi.org/10.48550/arXiv.2205.11991">https://doi.org/10.48550/arXiv.2205.11991</a>.
  ieee: D. Zikelic, M. Lechner, K. Chatterjee, and T. A. Henzinger, “Learning stabilizing
    policies in stochastic control systems,” <i>arXiv</i>. .
  ista: Zikelic D, Lechner M, Chatterjee K, Henzinger TA. Learning stabilizing policies
    in stochastic control systems. arXiv, <a href="https://doi.org/10.48550/arXiv.2205.11991">10.48550/arXiv.2205.11991</a>.
  mla: Zikelic, Dorde, et al. “Learning Stabilizing Policies in Stochastic Control
    Systems.” <i>ArXiv</i>, doi:<a href="https://doi.org/10.48550/arXiv.2205.11991">10.48550/arXiv.2205.11991</a>.
  short: D. Zikelic, M. Lechner, K. Chatterjee, T.A. Henzinger, ArXiv (n.d.).
date_created: 2023-11-24T13:22:30Z
date_published: 2022-05-24T00:00:00Z
date_updated: 2025-07-14T09:10:00Z
day: '24'
department:
- _id: KrCh
- _id: ToHe
doi: 10.48550/arXiv.2205.11991
ec_funded: 1
external_id:
  arxiv:
  - '2205.11991'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2205.11991
month: '05'
oa: 1
oa_version: Preprint
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: arXiv
publication_status: submitted
related_material:
  record:
  - id: '14539'
    relation: dissertation_contains
    status: public
status: public
title: Learning stabilizing policies in stochastic control systems
type: preprint
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2022'
...
