---
_id: '12885'
abstract:
- lang: eng
  text: 'High-performance semiconductors rely upon precise control of heat and charge
    transport. This can be achieved by precisely engineering defects in polycrystalline
    solids. There are multiple approaches to preparing such polycrystalline semiconductors,
    and the transformation of solution-processed colloidal nanoparticles is appealing
    because colloidal nanoparticles combine low cost with structural and compositional
    tunability along with rich surface chemistry. However, the multiple processes
    from nanoparticle synthesis to the final bulk nanocomposites are very complex.
    They involve nanoparticle purification, post-synthetic modifications, and finally
    consolidation (thermal treatments and densification). All these properties dictate
    the final material’s composition and microstructure, ultimately affecting its
    functional properties. This thesis explores the synthesis, surface chemistry and
    consolidation of colloidal semiconductor nanoparticles into dense solids. In particular,
    the transformations that take place during these processes, and their effect on
    the material’s transport properties are evaluated. '
acknowledged_ssus:
- _id: EM-Fac
- _id: NanoFab
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Mariano
  full_name: Calcabrini, Mariano
  id: 45D7531A-F248-11E8-B48F-1D18A9856A87
  last_name: Calcabrini
  orcid: 0000-0003-4566-5877
citation:
  ama: 'Calcabrini M. Nanoparticle-based semiconductor solids: From synthesis to consolidation.
    2023. doi:<a href="https://doi.org/10.15479/at:ista:12885">10.15479/at:ista:12885</a>'
  apa: 'Calcabrini, M. (2023). <i>Nanoparticle-based semiconductor solids: From synthesis
    to consolidation</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/at:ista:12885">https://doi.org/10.15479/at:ista:12885</a>'
  chicago: 'Calcabrini, Mariano. “Nanoparticle-Based Semiconductor Solids: From Synthesis
    to Consolidation.” Institute of Science and Technology Austria, 2023. <a href="https://doi.org/10.15479/at:ista:12885">https://doi.org/10.15479/at:ista:12885</a>.'
  ieee: 'M. Calcabrini, “Nanoparticle-based semiconductor solids: From synthesis to
    consolidation,” Institute of Science and Technology Austria, 2023.'
  ista: 'Calcabrini M. 2023. Nanoparticle-based semiconductor solids: From synthesis
    to consolidation. Institute of Science and Technology Austria.'
  mla: 'Calcabrini, Mariano. <i>Nanoparticle-Based Semiconductor Solids: From Synthesis
    to Consolidation</i>. Institute of Science and Technology Austria, 2023, doi:<a
    href="https://doi.org/10.15479/at:ista:12885">10.15479/at:ista:12885</a>.'
  short: 'M. Calcabrini, Nanoparticle-Based Semiconductor Solids: From Synthesis to
    Consolidation, Institute of Science and Technology Austria, 2023.'
date_created: 2023-05-02T07:58:57Z
date_published: 2023-04-28T00:00:00Z
date_updated: 2023-08-14T07:25:26Z
day: '28'
ddc:
- '546'
- '541'
degree_awarded: PhD
department:
- _id: GradSch
- _id: MaIb
doi: 10.15479/at:ista:12885
ec_funded: 1
file:
- access_level: closed
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  creator: mcalcabr
  date_created: 2023-05-02T07:43:18Z
  date_updated: 2023-05-02T07:43:18Z
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  date_updated: 2023-05-02T07:42:45Z
  file_id: '12888'
  file_name: Thesis_Calcabrini_pdfa.pdf
  file_size: 8742220
  relation: main_file
  success: 1
file_date_updated: 2023-05-02T07:43:18Z
has_accepted_license: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: '82'
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication_identifier:
  isbn:
  - 978-3-99078-028-2
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '10806'
    relation: part_of_dissertation
    status: public
  - id: '10042'
    relation: part_of_dissertation
    status: public
  - id: '12237'
    relation: part_of_dissertation
    status: public
  - id: '9118'
    relation: part_of_dissertation
    status: public
  - id: '10123'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
title: 'Nanoparticle-based semiconductor solids: From synthesis to consolidation'
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2023'
...
---
_id: '12890'
abstract:
- lang: eng
  text: We introduce a stochastic cellular automaton as a model for culture and border
    formation. The model can be conceptualized as a game where the expansion rate
    of cultures is quantified in terms of their area and perimeter in such a way that
    approximately geometrically round cultures get a competitive advantage. We first
    analyze the model with periodic boundary conditions, where we study how the model
    can end up in a fixed state, i.e., freezes. Then we implement the model on the
    European geography with mountains and rivers. We see how the model reproduces
    some qualitative features of European culture formation, namely, that rivers and
    mountains are more frequently borders between cultures, mountainous regions tend
    to have higher cultural diversity, and the central European plain has less clear
    cultural borders.
acknowledgement: Thanks to Kim Sneppen, Svend Krøjer, Peter Wildemann, Peter Rasmussen
  and Kent Bækgaard Lauritsen for discussions and suggestions. FRK acknowledges support
  from the Villum Foundation for support through the QMATH center of Excellence (Grant
  No. 10059) and the Villum Young Investigator (Grant No. 25452) programs.
article_number: '054307'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Frederik Ravn
  full_name: Klausen, Frederik Ravn
  last_name: Klausen
- first_name: Asbjørn Bækgaard
  full_name: Lauritsen, Asbjørn Bækgaard
  id: e1a2682f-dc8d-11ea-abe3-81da9ac728f1
  last_name: Lauritsen
  orcid: 0000-0003-4476-2288
citation:
  ama: Klausen FR, Lauritsen AB. Stochastic cellular automaton model of culture formation.
    <i>Physical Review E</i>. 2023;108(5). doi:<a href="https://doi.org/10.1103/PhysRevE.108.054307">10.1103/PhysRevE.108.054307</a>
  apa: Klausen, F. R., &#38; Lauritsen, A. B. (2023). Stochastic cellular automaton
    model of culture formation. <i>Physical Review E</i>. American Physical Society.
    <a href="https://doi.org/10.1103/PhysRevE.108.054307">https://doi.org/10.1103/PhysRevE.108.054307</a>
  chicago: Klausen, Frederik Ravn, and Asbjørn Bækgaard Lauritsen. “Stochastic Cellular
    Automaton Model of Culture Formation.” <i>Physical Review E</i>. American Physical
    Society, 2023. <a href="https://doi.org/10.1103/PhysRevE.108.054307">https://doi.org/10.1103/PhysRevE.108.054307</a>.
  ieee: F. R. Klausen and A. B. Lauritsen, “Stochastic cellular automaton model of
    culture formation,” <i>Physical Review E</i>, vol. 108, no. 5. American Physical
    Society, 2023.
  ista: Klausen FR, Lauritsen AB. 2023. Stochastic cellular automaton model of culture
    formation. Physical Review E. 108(5), 054307.
  mla: Klausen, Frederik Ravn, and Asbjørn Bækgaard Lauritsen. “Stochastic Cellular
    Automaton Model of Culture Formation.” <i>Physical Review E</i>, vol. 108, no.
    5, 054307, American Physical Society, 2023, doi:<a href="https://doi.org/10.1103/PhysRevE.108.054307">10.1103/PhysRevE.108.054307</a>.
  short: F.R. Klausen, A.B. Lauritsen, Physical Review E 108 (2023).
date_created: 2023-05-04T08:35:01Z
date_published: 2023-11-08T00:00:00Z
date_updated: 2023-11-13T07:47:30Z
day: '08'
department:
- _id: GradSch
- _id: RoSe
doi: 10.1103/PhysRevE.108.054307
external_id:
  arxiv:
  - '2305.02153'
intvolume: '       108'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2305.02153
month: '11'
oa: 1
oa_version: Preprint
publication: Physical Review E
publication_identifier:
  eissn:
  - 2470-0053
  issn:
  - 2470-0045
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/FrederikRavnKlausen/model-for-culture-formation
  record:
  - id: '12869'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Stochastic cellular automaton model of culture formation
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 108
year: '2023'
...
---
_id: '12891'
abstract:
- lang: eng
  text: "The tight spatiotemporal coordination of signaling activity determining embryo\r\npatterning
    and the physical processes driving embryo morphogenesis renders\r\nembryonic development
    robust, such that key developmental processes can unfold\r\nrelatively normally
    even outside of the full embryonic context. For instance, embryonic\r\nstem cell
    cultures can recapitulate the hallmarks of gastrulation, i.e. break symmetry\r\nleading
    to germ layer formation and morphogenesis, in a very reduced environment.\r\nThis
    leads to questions on specific contributions of embryo-specific features, such
    as\r\nthe presence of extraembryonic tissues, which are inherently involved in
    gastrulation\r\nin the full embryonic context. To address this, we established
    zebrafish embryonic\r\nexplants without the extraembryonic yolk cell, an important
    player as a signaling\r\nsource and for morphogenesis during gastrulation, as
    a model of ex vivo development.\r\nWe found that dorsal-marginal determinants
    are required and sufficient in these\r\nexplants to form and pattern all three
    germ layers. However, formation of tissues,\r\nwhich require the highest Nodal-signaling
    levels, is variable, demonstrating a\r\ncontribution of extraembryonic tissues
    for reaching peak Nodal signaling levels.\r\nBlastoderm explants also undergo
    gastrulation-like axis elongation. We found that this\r\nelongation movement shows
    hallmarks of oriented mesendoderm cell intercalations\r\ntypically associated
    with dorsal tissues in the intact embryo. These are disrupted by\r\nuniform upregulation
    of BMP signaling activity and concomitant explant ventralization,\r\nsuggesting
    that tight spatial control of BMP signaling is a prerequisite for explant\r\nmorphogenesis.
    This control is achieved by Nodal signaling, which is critical for\r\neffectively
    downregulating BMP signaling in the mesendoderm, highlighting that Nodal\r\nsignaling
    is not only directly required for mesendoderm cell fate specification and\r\nmorphogenesis,
    but also by maintaining low levels of BMP signaling at the dorsal side.\r\nCollectively,
    we provide insights into the capacity and organization of signaling and\r\nmorphogenetic
    domains to recapitulate features of zebrafish gastrulation outside of\r\nthe full
    embryonic context."
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Alexandra
  full_name: Schauer, Alexandra
  id: 30A536BA-F248-11E8-B48F-1D18A9856A87
  last_name: Schauer
  orcid: 0000-0001-7659-9142
citation:
  ama: 'Schauer A. Mesendoderm formation in zebrafish gastrulation: The role of extraembryonic
    tissues. 2023. doi:<a href="https://doi.org/10.15479/at:ista:12891">10.15479/at:ista:12891</a>'
  apa: 'Schauer, A. (2023). <i>Mesendoderm formation in zebrafish gastrulation: The
    role of extraembryonic tissues</i>. Institute of Science and Technology Austria.
    <a href="https://doi.org/10.15479/at:ista:12891">https://doi.org/10.15479/at:ista:12891</a>'
  chicago: 'Schauer, Alexandra. “Mesendoderm Formation in Zebrafish Gastrulation:
    The Role of Extraembryonic Tissues.” Institute of Science and Technology Austria,
    2023. <a href="https://doi.org/10.15479/at:ista:12891">https://doi.org/10.15479/at:ista:12891</a>.'
  ieee: 'A. Schauer, “Mesendoderm formation in zebrafish gastrulation: The role of
    extraembryonic tissues,” Institute of Science and Technology Austria, 2023.'
  ista: 'Schauer A. 2023. Mesendoderm formation in zebrafish gastrulation: The role
    of extraembryonic tissues. Institute of Science and Technology Austria.'
  mla: 'Schauer, Alexandra. <i>Mesendoderm Formation in Zebrafish Gastrulation: The
    Role of Extraembryonic Tissues</i>. Institute of Science and Technology Austria,
    2023, doi:<a href="https://doi.org/10.15479/at:ista:12891">10.15479/at:ista:12891</a>.'
  short: 'A. Schauer, Mesendoderm Formation in Zebrafish Gastrulation: The Role of
    Extraembryonic Tissues, Institute of Science and Technology Austria, 2023.'
date_created: 2023-05-05T08:48:20Z
date_published: 2023-05-05T00:00:00Z
date_updated: 2023-08-21T06:25:48Z
day: '05'
ddc:
- '570'
degree_awarded: PhD
department:
- _id: GradSch
- _id: CaHe
doi: 10.15479/at:ista:12891
ec_funded: 1
file:
- access_level: closed
  checksum: 59b0303dc483f40a96a610a90aab7ee9
  content_type: application/pdf
  creator: aschauer
  date_created: 2023-05-05T13:01:14Z
  date_updated: 2023-05-05T13:01:14Z
  embargo: 2024-05-05
  embargo_to: open_access
  file_id: '12907'
  file_name: Thesis_Schauer_final.pdf
  file_size: 31434230
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  checksum: 25f54e12479b6adaabd129a20568e6c1
  content_type: application/vnd.openxmlformats-officedocument.wordprocessingml.document
  creator: aschauer
  date_created: 2023-05-05T13:04:15Z
  date_updated: 2023-05-05T13:04:15Z
  file_id: '12908'
  file_name: Thesis_Schauer_final.docx
  file_size: 43809109
  relation: source_file
file_date_updated: 2023-05-05T13:04:15Z
has_accepted_license: '1'
language:
- iso: eng
month: '05'
oa_version: Published Version
page: '190'
project:
- _id: 260F1432-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742573'
  name: Interaction and feedback between cell mechanics and fate specification in
    vertebrate gastrulation
- _id: 26B1E39C-B435-11E9-9278-68D0E5697425
  grant_number: '25239'
  name: 'Mesendoderm specification in zebrafish: The role of extraembryonic tissues'
publication_identifier:
  issn:
  - 2663 - 337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '8966'
    relation: part_of_dissertation
    status: public
  - id: '7888'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
title: 'Mesendoderm formation in zebrafish gastrulation: The role of extraembryonic
  tissues'
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2023'
...
---
_id: '12897'
abstract:
- lang: eng
  text: "Inverse design problems in fabrication-aware shape optimization are typically
    solved on discrete representations such as polygonal meshes. This thesis argues
    that there are benefits to treating these problems in the same domain as human
    designers, namely, the parametric one. One reason is that discretizing a parametric
    model usually removes the capability of making further manual changes to the design,
    because the human intent is captured by the shape parameters. Beyond this, knowledge
    about a design problem can sometimes reveal a structure that is present in a smooth
    representation, but is fundamentally altered by discretizing. In this case, working
    in the parametric domain may even simplify the optimization task. We present two
    lines of research that explore both of these aspects of fabrication-aware shape
    optimization on parametric representations.\r\n\r\nThe first project studies the
    design of plane elastic curves and Kirchhoff rods, which are common mathematical
    models for describing the deformation of thin elastic rods such as beams, ribbons,
    cables, and hair. Our main contribution is a characterization of all curved shapes
    that can be attained by bending and twisting elastic rods having a stiffness that
    is allowed to vary across the length. Elements like these can be manufactured
    using digital fabrication devices such as 3d printers and digital cutters, and
    have applications in free-form architecture and soft robotics.\r\n\r\nWe show
    that the family of curved shapes that can be produced this way admits geometric
    description that is concise and computationally convenient. In the case of plane
    curves, the geometric description is intuitive enough to allow a designer to determine
    whether a curved shape is physically achievable by visual inspection alone. We
    also present shape optimization algorithms that convert a user-defined curve in
    the plane or in three dimensions into the geometry of an elastic rod that will
    naturally deform to follow this curve when its endpoints are attached to a support
    structure. Implemented in an interactive software design tool, the rod geometry
    is generated in real time as the user edits a curve and enables fast prototyping.
    \r\n\r\nThe second project tackles the problem of general-purpose shape optimization
    on CAD models using a novel variant of the extended finite element method (XFEM).
    Our goal is the decoupling between the simulation mesh and the CAD model, so no
    geometry-dependent meshing or remeshing needs to be performed when the CAD parameters
    change during optimization. This is achieved by discretizing the embedding space
    of the CAD model, and using a new high-accuracy numerical integration method to
    enable XFEM on free-form elements bounded by the parametric surface patches of
    the model. Our simulation is differentiable from the CAD parameters to the simulation
    output, which enables us to use off-the-shelf gradient-based optimization procedures.
    The result is a method that fits seamlessly into the CAD workflow because it works
    on the same representation as the designer, enabling the alternation of manual
    editing and fabrication-aware optimization at will."
acknowledged_ssus:
- _id: M-Shop
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Christian
  full_name: Hafner, Christian
  id: 400429CC-F248-11E8-B48F-1D18A9856A87
  last_name: Hafner
citation:
  ama: 'Hafner C. Inverse shape design with parametric representations: Kirchhoff
    Rods and parametric surface models. 2023. doi:<a href="https://doi.org/10.15479/at:ista:12897">10.15479/at:ista:12897</a>'
  apa: 'Hafner, C. (2023). <i>Inverse shape design with parametric representations:
    Kirchhoff Rods and parametric surface models</i>. Institute of Science and Technology
    Austria. <a href="https://doi.org/10.15479/at:ista:12897">https://doi.org/10.15479/at:ista:12897</a>'
  chicago: 'Hafner, Christian. “Inverse Shape Design with Parametric Representations:
    Kirchhoff Rods and Parametric Surface Models.” Institute of Science and Technology
    Austria, 2023. <a href="https://doi.org/10.15479/at:ista:12897">https://doi.org/10.15479/at:ista:12897</a>.'
  ieee: 'C. Hafner, “Inverse shape design with parametric representations: Kirchhoff
    Rods and parametric surface models,” Institute of Science and Technology Austria,
    2023.'
  ista: 'Hafner C. 2023. Inverse shape design with parametric representations: Kirchhoff
    Rods and parametric surface models. Institute of Science and Technology Austria.'
  mla: 'Hafner, Christian. <i>Inverse Shape Design with Parametric Representations:
    Kirchhoff Rods and Parametric Surface Models</i>. Institute of Science and Technology
    Austria, 2023, doi:<a href="https://doi.org/10.15479/at:ista:12897">10.15479/at:ista:12897</a>.'
  short: 'C. Hafner, Inverse Shape Design with Parametric Representations: Kirchhoff
    Rods and Parametric Surface Models, Institute of Science and Technology Austria,
    2023.'
date_created: 2023-05-05T10:40:14Z
date_published: 2023-05-05T00:00:00Z
date_updated: 2024-01-29T10:47:51Z
day: '05'
ddc:
- '516'
- '004'
- '518'
- '531'
degree_awarded: PhD
department:
- _id: GradSch
- _id: BeBi
doi: 10.15479/at:ista:12897
ec_funded: 1
file:
- access_level: open_access
  checksum: cc2094e92fa27000b70eb4bfb76d6b5a
  content_type: application/pdf
  creator: chafner
  date_created: 2023-05-11T10:43:20Z
  date_updated: 2023-12-08T23:30:04Z
  embargo: 2023-12-07
  file_id: '12942'
  file_name: thesis-hafner-2023may11-a2b.pdf
  file_size: 50714445
  relation: main_file
- access_level: closed
  checksum: a6b51334be2b81672357b1549afab40c
  content_type: application/pdf
  creator: chafner
  date_created: 2023-05-11T10:43:44Z
  date_updated: 2023-12-08T23:30:04Z
  embargo_to: open_access
  file_id: '12943'
  file_name: thesis-release-form.pdf
  file_size: 265319
  relation: source_file
file_date_updated: 2023-12-08T23:30:04Z
has_accepted_license: '1'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: '180'
project:
- _id: 24F9549A-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '715767'
  name: 'MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and
    Modeling'
publication_identifier:
  isbn:
  - 978-3-99078-031-2
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '9817'
    relation: part_of_dissertation
    status: public
  - id: '7117'
    relation: part_of_dissertation
    status: public
  - id: '13188'
    relation: dissertation_contains
    status: public
status: public
supervisor:
- first_name: Bernd
  full_name: Bickel, Bernd
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
title: 'Inverse shape design with parametric representations: Kirchhoff Rods and parametric
  surface models'
type: dissertation
user_id: 400429CC-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '12900'
abstract:
- lang: eng
  text: "About a 100 years ago, we discovered that our universe is inherently noisy,
    that is, measuring any physical quantity with a precision beyond a certain point
    is not possible because of an omnipresent inherent noise. We call this - the quantum
    noise. Certain physical processes allow this quantum noise to get correlated in
    conjugate physical variables. These quantum correlations can be used to go beyond
    the potential of our inherently noisy universe and obtain a quantum advantage
    over the classical applications. \r\n\r\nQuantum noise being inherent also means
    that, at the fundamental level, the physical quantities are not well defined and
    therefore, objects can stay in multiple states at the same time. For example,
    the position of a particle not being well defined means that the particle is in
    multiple positions at the same time. About 4 decades ago, we started exploring
    the possibility of using objects which can be in multiple states at the same time
    to increase the dimensionality in computation. Thus, the field of quantum computing
    was born. We discovered that using quantum entanglement, a property closely related
    to quantum correlations, can be used to speed up computation of certain problems,
    such as factorisation of large numbers, faster than any known classical algorithm.
    Thus began the pursuit to make quantum computers a reality. \r\n\r\nTill date,
    we have explored quantum control over many physical systems including photons,
    spins, atoms, ions and even simple circuits made up of superconducting material.
    However, there persists one ubiquitous theme. The more readily a system interacts
    with an external field or matter, the more easily we can control it. But this
    also means that such a system can easily interact with a noisy environment and
    quickly lose its coherence. Consequently, such systems like electron spins need
    to be protected from the environment to ensure the longevity of their coherence.
    Other systems like nuclear spins are naturally protected as they do not interact
    easily with the environment. But, due to the same reason, it is harder to interact
    with such systems. \r\n\r\nAfter decades of experimentation with various systems,
    we are convinced that no one type of quantum system would be the best for all
    the quantum applications. We would need hybrid systems which are all interconnected
    - much like the current internet where all sorts of devices can all talk to each
    other - but now for quantum devices. A quantum internet. \r\n\r\nOptical photons
    are the best contenders to carry information for the quantum internet. They can
    carry quantum information cheaply and without much loss - the same reasons which
    has made them the backbone of our current internet. Following this direction,
    many systems, like trapped ions, have already demonstrated successful quantum
    links over a large distances using optical photons. However, some of the most
    promising contenders for quantum computing which are based on microwave frequencies
    have been left behind. This is because high energy optical photons can adversely
    affect fragile low-energy microwave systems. \r\n\r\nIn this thesis, we present
    substantial progress on this missing quantum link between microwave and optics
    using electrooptical nonlinearities in lithium niobate. The nonlinearities are
    enhanced by using resonant cavities for all the involved modes leading to observation
    of strong direct coupling between optical and microwave frequencies. With this
    strong coupling we are not only able to achieve almost 100\\% internal conversion
    efficiency with low added noise, thus presenting a quantum-enabled transducer,
    but also we are able to observe novel effects such as cooling of a microwave mode
    using optics. The strong coupling regime also leads to direct observation of dynamical
    backaction effect between microwave and optical frequencies which are studied
    in detail here. Finally, we also report first observation of microwave-optics
    entanglement in form of two-mode squeezed vacuum squeezed 0.7dB below vacuum level.
    \r\nWith this new bridge between microwave and optics, the microwave-based quantum
    technologies can finally be a part of a quantum network which is based on optical
    photons - putting us one step closer to a future with quantum internet. "
acknowledged_ssus:
- _id: M-Shop
- _id: SSU
- _id: NanoFab
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Rishabh
  full_name: Sahu, Rishabh
  id: 47D26E34-F248-11E8-B48F-1D18A9856A87
  last_name: Sahu
  orcid: 0000-0001-6264-2162
citation:
  ama: Sahu R. Cavity quantum electrooptics. 2023. doi:<a href="https://doi.org/10.15479/at:ista:12900">10.15479/at:ista:12900</a>
  apa: Sahu, R. (2023). <i>Cavity quantum electrooptics</i>. Institute of Science
    and Technology Austria. <a href="https://doi.org/10.15479/at:ista:12900">https://doi.org/10.15479/at:ista:12900</a>
  chicago: Sahu, Rishabh. “Cavity Quantum Electrooptics.” Institute of Science and
    Technology Austria, 2023. <a href="https://doi.org/10.15479/at:ista:12900">https://doi.org/10.15479/at:ista:12900</a>.
  ieee: R. Sahu, “Cavity quantum electrooptics,” Institute of Science and Technology
    Austria, 2023.
  ista: Sahu R. 2023. Cavity quantum electrooptics. Institute of Science and Technology
    Austria.
  mla: Sahu, Rishabh. <i>Cavity Quantum Electrooptics</i>. Institute of Science and
    Technology Austria, 2023, doi:<a href="https://doi.org/10.15479/at:ista:12900">10.15479/at:ista:12900</a>.
  short: R. Sahu, Cavity Quantum Electrooptics, Institute of Science and Technology
    Austria, 2023.
date_created: 2023-05-05T11:08:50Z
date_published: 2023-05-05T00:00:00Z
date_updated: 2024-10-29T09:11:05Z
day: '05'
ddc:
- '537'
- '535'
- '539'
degree_awarded: PhD
department:
- _id: GradSch
- _id: JoFi
doi: 10.15479/at:ista:12900
ec_funded: 1
file:
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  relation: main_file
file_date_updated: 2023-07-06T11:37:40Z
has_accepted_license: '1'
keyword:
- quantum optics
- electrooptics
- quantum networks
- quantum communication
- transduction
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '05'
oa_version: Published Version
page: '190'
project:
- _id: 26336814-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '758053'
  name: A Fiber Optic Transceiver for Superconducting Qubits
- _id: 9B868D20-BA93-11EA-9121-9846C619BF3A
  call_identifier: H2020
  grant_number: '899354'
  name: Quantum Local Area Networks with Superconducting Qubits
- _id: bdb108fd-d553-11ed-ba76-83dc74a9864f
  name: QUANTUM INFORMATION SYSTEMS BEYOND CLASSICAL CAPABILITIES / P5- Integration
    of Superconducting Quantum Circuits
publication_identifier:
  isbn:
  - 978-3-99078-030-5
  issn:
  - 2663 - 337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '9114'
    relation: part_of_dissertation
    status: public
  - id: '10924'
    relation: part_of_dissertation
    status: public
  - id: '13175'
    relation: new_edition
    status: public
status: public
supervisor:
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
title: Cavity quantum electrooptics
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2023'
...
---
_id: '12911'
abstract:
- lang: eng
  text: 'This paper establishes new connections between many-body quantum systems,
    One-body Reduced Density Matrices Functional Theory (1RDMFT) and Optimal Transport
    (OT), by interpreting the problem of computing the ground-state energy of a finite-dimensional
    composite quantum system at positive temperature as a non-commutative entropy
    regularized Optimal Transport problem. We develop a new approach to fully characterize
    the dual-primal solutions in such non-commutative setting. The mathematical formalism
    is particularly relevant in quantum chemistry: numerical realizations of the many-electron
    ground-state energy can be computed via a non-commutative version of Sinkhorn
    algorithm. Our approach allows to prove convergence and robustness of this algorithm,
    which, to our best knowledge, were unknown even in the two marginal case. Our
    methods are based on a priori estimates in the dual problem, which we believe
    to be of independent interest. Finally, the above results are extended in 1RDMFT
    setting, where bosonic or fermionic symmetry conditions are enforced on the problem.'
acknowledgement: "This work started when A.G. was visiting the Erwin Schrödinger Institute
  and then continued when D.F. and L.P visited the Theoretical Chemistry Department
  of the Vrije Universiteit Amsterdam. The authors thank the hospitality of both places
  and, especially, P. Gori-Giorgi and K. Giesbertz for fruitful discussions and literature
  suggestions in the early state of the project. The authors also thank J. Maas and
  R. Seiringer for their feedback and useful comments to a first draft of the article.
  Finally, we acknowledge the high quality review done by the anonymous referee of
  our paper, who we would like to thank for the excellent work and constructive feedback.\r\nD.F
  acknowledges support by the European Research Council (ERC) under the European Union's
  Horizon 2020 research and innovation programme (grant agreements No 716117 and No
  694227). A.G. acknowledges funding by the HORIZON EUROPE European Research Council
  under H2020/MSCA-IF “OTmeetsDFT” [grant ID: 795942] as well as partial support of
  his research by the Canada Research Chairs Program (ID 2021-00234) and Natural Sciences
  and Engineering Research Council of Canada, RGPIN-2022-05207. L.P. acknowledges
  support by the Austrian Science Fund (FWF), grants No W1245 and No F65, and by the
  Deutsche Forschungsgemeinschaft (DFG) - Project number 390685813."
article_number: '109963'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Dario
  full_name: Feliciangeli, Dario
  id: 41A639AA-F248-11E8-B48F-1D18A9856A87
  last_name: Feliciangeli
  orcid: 0000-0003-0754-8530
- first_name: Augusto
  full_name: Gerolin, Augusto
  last_name: Gerolin
- first_name: Lorenzo
  full_name: Portinale, Lorenzo
  id: 30AD2CBC-F248-11E8-B48F-1D18A9856A87
  last_name: Portinale
citation:
  ama: Feliciangeli D, Gerolin A, Portinale L. A non-commutative entropic optimal
    transport approach to quantum composite systems at positive temperature. <i>Journal
    of Functional Analysis</i>. 2023;285(4). doi:<a href="https://doi.org/10.1016/j.jfa.2023.109963">10.1016/j.jfa.2023.109963</a>
  apa: Feliciangeli, D., Gerolin, A., &#38; Portinale, L. (2023). A non-commutative
    entropic optimal transport approach to quantum composite systems at positive temperature.
    <i>Journal of Functional Analysis</i>. Elsevier. <a href="https://doi.org/10.1016/j.jfa.2023.109963">https://doi.org/10.1016/j.jfa.2023.109963</a>
  chicago: Feliciangeli, Dario, Augusto Gerolin, and Lorenzo Portinale. “A Non-Commutative
    Entropic Optimal Transport Approach to Quantum Composite Systems at Positive Temperature.”
    <i>Journal of Functional Analysis</i>. Elsevier, 2023. <a href="https://doi.org/10.1016/j.jfa.2023.109963">https://doi.org/10.1016/j.jfa.2023.109963</a>.
  ieee: D. Feliciangeli, A. Gerolin, and L. Portinale, “A non-commutative entropic
    optimal transport approach to quantum composite systems at positive temperature,”
    <i>Journal of Functional Analysis</i>, vol. 285, no. 4. Elsevier, 2023.
  ista: Feliciangeli D, Gerolin A, Portinale L. 2023. A non-commutative entropic optimal
    transport approach to quantum composite systems at positive temperature. Journal
    of Functional Analysis. 285(4), 109963.
  mla: Feliciangeli, Dario, et al. “A Non-Commutative Entropic Optimal Transport Approach
    to Quantum Composite Systems at Positive Temperature.” <i>Journal of Functional
    Analysis</i>, vol. 285, no. 4, 109963, Elsevier, 2023, doi:<a href="https://doi.org/10.1016/j.jfa.2023.109963">10.1016/j.jfa.2023.109963</a>.
  short: D. Feliciangeli, A. Gerolin, L. Portinale, Journal of Functional Analysis
    285 (2023).
date_created: 2023-05-07T22:01:02Z
date_published: 2023-08-15T00:00:00Z
date_updated: 2023-11-14T13:21:01Z
day: '15'
department:
- _id: RoSe
- _id: JaMa
doi: 10.1016/j.jfa.2023.109963
ec_funded: 1
external_id:
  arxiv:
  - '2106.11217'
  isi:
  - '000990804300001'
intvolume: '       285'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2106.11217
month: '08'
oa: 1
oa_version: Preprint
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '716117'
  name: Optimal Transport and Stochastic Dynamics
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
- _id: 260482E2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: ' F06504'
  name: Taming Complexity in Partial Di erential Systems
publication: Journal of Functional Analysis
publication_identifier:
  eissn:
  - 1096-0783
  issn:
  - 0022-1236
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  record:
  - id: '9792'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: A non-commutative entropic optimal transport approach to quantum composite
  systems at positive temperature
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 285
year: '2023'
...
---
_id: '12912'
abstract:
- lang: eng
  text: The chemical potential of adsorbed or confined fluids provides insight into
    their unique thermodynamic properties and determines adsorption isotherms. However,
    it is often difficult to compute this quantity from atomistic simulations using
    existing statistical mechanical methods. We introduce a computational framework
    that utilizes static structure factors, thermodynamic integration, and free energy
    perturbation for calculating the absolute chemical potential of fluids. For demonstration,
    we apply the method to compute the adsorption isotherms of carbon dioxide in a
    metal-organic framework and water in carbon nanotubes.
acknowledgement: We thank Aleks Reinhardt and Daan Frenkel for their insightful comments
  and suggestions on the article. B.C. acknowledges the resources provided by the
  Cambridge Tier-2 system operated by the University of Cambridge Research Computing
  Service funded by EPSRC Tier-2 capital Grant No. EP/P020259/1.
article_number: '161101 '
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Rochus
  full_name: Schmid, Rochus
  last_name: Schmid
- first_name: Bingqing
  full_name: Cheng, Bingqing
  id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
  last_name: Cheng
  orcid: 0000-0002-3584-9632
citation:
  ama: Schmid R, Cheng B. Computing chemical potentials of adsorbed or confined fluids.
    <i>The Journal of Chemical Physics</i>. 2023;158(16). doi:<a href="https://doi.org/10.1063/5.0146711">10.1063/5.0146711</a>
  apa: Schmid, R., &#38; Cheng, B. (2023). Computing chemical potentials of adsorbed
    or confined fluids. <i>The Journal of Chemical Physics</i>. AIP Publishing. <a
    href="https://doi.org/10.1063/5.0146711">https://doi.org/10.1063/5.0146711</a>
  chicago: Schmid, Rochus, and Bingqing Cheng. “Computing Chemical Potentials of Adsorbed
    or Confined Fluids.” <i>The Journal of Chemical Physics</i>. AIP Publishing, 2023.
    <a href="https://doi.org/10.1063/5.0146711">https://doi.org/10.1063/5.0146711</a>.
  ieee: R. Schmid and B. Cheng, “Computing chemical potentials of adsorbed or confined
    fluids,” <i>The Journal of Chemical Physics</i>, vol. 158, no. 16. AIP Publishing,
    2023.
  ista: Schmid R, Cheng B. 2023. Computing chemical potentials of adsorbed or confined
    fluids. The Journal of Chemical Physics. 158(16), 161101.
  mla: Schmid, Rochus, and Bingqing Cheng. “Computing Chemical Potentials of Adsorbed
    or Confined Fluids.” <i>The Journal of Chemical Physics</i>, vol. 158, no. 16,
    161101, AIP Publishing, 2023, doi:<a href="https://doi.org/10.1063/5.0146711">10.1063/5.0146711</a>.
  short: R. Schmid, B. Cheng, The Journal of Chemical Physics 158 (2023).
date_created: 2023-05-07T22:01:03Z
date_published: 2023-04-24T00:00:00Z
date_updated: 2023-08-01T14:34:49Z
day: '24'
ddc:
- '540'
department:
- _id: BiCh
doi: 10.1063/5.0146711
external_id:
  arxiv:
  - '2302.01297'
  isi:
  - '001010676000010'
  pmid:
  - '37093149'
file:
- access_level: open_access
  checksum: 4ab8c965f2fa4e17920bfa846847f137
  content_type: application/pdf
  creator: dernst
  date_created: 2023-05-08T07:44:49Z
  date_updated: 2023-05-08T07:44:49Z
  file_id: '12918'
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  file_size: 6499468
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  success: 1
file_date_updated: 2023-05-08T07:44:49Z
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intvolume: '       158'
isi: 1
issue: '16'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/BingqingCheng/mu-adsorption
  - relation: software
    url: https://github.com/BingqingCheng/S0
scopus_import: '1'
status: public
title: Computing chemical potentials of adsorbed or confined fluids
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 158
year: '2023'
...
---
_id: '12913'
abstract:
- lang: eng
  text: The coexistence of gate-tunable superconducting, magnetic and topological
    orders in magic-angle twisted bilayer graphene provides opportunities for the
    creation of hybrid Josephson junctions. Here we report the fabrication of gate-defined
    symmetry-broken Josephson junctions in magic-angle twisted bilayer graphene, where
    the weak link is gate-tuned close to the correlated insulator state with a moiré
    filling factor of υ = −2. We observe a phase-shifted and asymmetric Fraunhofer
    pattern with a pronounced magnetic hysteresis. Our theoretical calculations of
    the junction weak link—with valley polarization and orbital magnetization—explain
    most of these unconventional features. The effects persist up to the critical
    temperature of 3.5 K, with magnetic hysteresis observed below 800 mK. We show
    how the combination of magnetization and its current-induced magnetization switching
    allows us to realise a programmable zero-field superconducting diode. Our results
    represent a major advance towards the creation of future superconducting quantum
    electronic devices.
acknowledgement: We are grateful for the fruitful discussions with Allan MacDonald
  and Andrei Bernevig. D.K.E. acknowledges support from the Ministry of Economy and
  Competitiveness of Spain through the “Severo Ochoa” program for Centers of Excellence
  in R&D (SE5-0522), Fundació Privada Cellex, Fundació Privada Mir-Puig, the Generalitat
  de Catalunya through the CERCA program, funding from the European Research Council
  (ERC) under the European Union’s Horizon 2020 research and innovation program (grant
  agreement no. 852927)” and the La Caixa Foundation. K.T.L. acknowledges the support
  of the Ministry of Science and Technology of China and the HKRGC through grants
  MOST20SC04, C6025-19G, 16310219, 16309718, and 16310520. J.D.M. acknowledges support
  from the INPhINIT ‘la Caixa’ Foundation (ID 100010434) fellowship program (LCF/BQ/DI19/11730021).
  Y.M.X. acknowledges the support of HKRGC through Grant No. PDFS2223-6S01.
article_number: '2396'
article_processing_charge: No
article_type: original
author:
- first_name: J.
  full_name: Díez-Mérida, J.
  last_name: Díez-Mérida
- first_name: A.
  full_name: Díez-Carlón, A.
  last_name: Díez-Carlón
- first_name: S. Y.
  full_name: Yang, S. Y.
  last_name: Yang
- first_name: Y. M.
  full_name: Xie, Y. M.
  last_name: Xie
- first_name: X. J.
  full_name: Gao, X. J.
  last_name: Gao
- first_name: Jorden L
  full_name: Senior, Jorden L
  id: 5479D234-2D30-11EA-89CC-40953DDC885E
  last_name: Senior
- first_name: K.
  full_name: Watanabe, K.
  last_name: Watanabe
- first_name: T.
  full_name: Taniguchi, T.
  last_name: Taniguchi
- first_name: X.
  full_name: Lu, X.
  last_name: Lu
- first_name: Andrew P
  full_name: Higginbotham, Andrew P
  id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
  last_name: Higginbotham
  orcid: 0000-0003-2607-2363
- first_name: K. T.
  full_name: Law, K. T.
  last_name: Law
- first_name: Dmitri K.
  full_name: Efetov, Dmitri K.
  last_name: Efetov
citation:
  ama: Díez-Mérida J, Díez-Carlón A, Yang SY, et al. Symmetry-broken Josephson junctions
    and superconducting diodes in magic-angle twisted bilayer graphene. <i>Nature
    Communications</i>. 2023;14. doi:<a href="https://doi.org/10.1038/s41467-023-38005-7">10.1038/s41467-023-38005-7</a>
  apa: Díez-Mérida, J., Díez-Carlón, A., Yang, S. Y., Xie, Y. M., Gao, X. J., Senior,
    J. L., … Efetov, D. K. (2023). Symmetry-broken Josephson junctions and superconducting
    diodes in magic-angle twisted bilayer graphene. <i>Nature Communications</i>.
    Springer Nature. <a href="https://doi.org/10.1038/s41467-023-38005-7">https://doi.org/10.1038/s41467-023-38005-7</a>
  chicago: Díez-Mérida, J., A. Díez-Carlón, S. Y. Yang, Y. M. Xie, X. J. Gao, Jorden
    L Senior, K. Watanabe, et al. “Symmetry-Broken Josephson Junctions and Superconducting
    Diodes in Magic-Angle Twisted Bilayer Graphene.” <i>Nature Communications</i>.
    Springer Nature, 2023. <a href="https://doi.org/10.1038/s41467-023-38005-7">https://doi.org/10.1038/s41467-023-38005-7</a>.
  ieee: J. Díez-Mérida <i>et al.</i>, “Symmetry-broken Josephson junctions and superconducting
    diodes in magic-angle twisted bilayer graphene,” <i>Nature Communications</i>,
    vol. 14. Springer Nature, 2023.
  ista: Díez-Mérida J, Díez-Carlón A, Yang SY, Xie YM, Gao XJ, Senior JL, Watanabe
    K, Taniguchi T, Lu X, Higginbotham AP, Law KT, Efetov DK. 2023. Symmetry-broken
    Josephson junctions and superconducting diodes in magic-angle twisted bilayer
    graphene. Nature Communications. 14, 2396.
  mla: Díez-Mérida, J., et al. “Symmetry-Broken Josephson Junctions and Superconducting
    Diodes in Magic-Angle Twisted Bilayer Graphene.” <i>Nature Communications</i>,
    vol. 14, 2396, Springer Nature, 2023, doi:<a href="https://doi.org/10.1038/s41467-023-38005-7">10.1038/s41467-023-38005-7</a>.
  short: J. Díez-Mérida, A. Díez-Carlón, S.Y. Yang, Y.M. Xie, X.J. Gao, J.L. Senior,
    K. Watanabe, T. Taniguchi, X. Lu, A.P. Higginbotham, K.T. Law, D.K. Efetov, Nature
    Communications 14 (2023).
date_created: 2023-05-07T22:01:03Z
date_published: 2023-04-26T00:00:00Z
date_updated: 2023-08-01T14:34:00Z
day: '26'
ddc:
- '530'
department:
- _id: AnHi
doi: 10.1038/s41467-023-38005-7
external_id:
  isi:
  - '000979744000004'
  pmid:
  - '37100775'
file:
- access_level: open_access
  checksum: a778105665c10beb2354c92d2b295115
  content_type: application/pdf
  creator: dernst
  date_created: 2023-05-08T07:26:40Z
  date_updated: 2023-05-08T07:26:40Z
  file_id: '12917'
  file_name: 2023_NatureComm_DiezMerida.pdf
  file_size: 1405588
  relation: main_file
  success: 1
file_date_updated: 2023-05-08T07:26:40Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Symmetry-broken Josephson junctions and superconducting diodes in magic-angle
  twisted bilayer graphene
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 14
year: '2023'
...
---
_id: '12914'
abstract:
- lang: eng
  text: We numerically study two methods of measuring tunneling times using a quantum
    clock. In the conventional method using the Larmor clock, we show that the Larmor
    tunneling time can be shorter for higher tunneling barriers. In the second method,
    we study the probability of a spin-flip of a particle when it is transmitted through
    a potential barrier including a spatially rotating field interacting with its
    spin. According to the adiabatic theorem, the probability depends on the velocity
    of the particle inside the barrier. It is numerically observed that the probability
    increases for higher barriers, which is consistent with the result obtained by
    the Larmor clock. By comparing outcomes for different initial spin states, we
    suggest that one of the main causes of the apparent decrease in the tunneling
    time can be the filtering effect occurring at the end of the barrier.
acknowledgement: We thank W. H. Zurek, N. Sinitsyn, M. O. Scully, M. Arndt, and C.
  H. Marrows for helpful discussions. F.S. acknowledges support from the Los Alamos
  National Laboratory LDRD program under Project No. 20230049DR and the Center for
  Nonlinear Studies. F.S. also thanks the European Union’s Horizon 2020 research and
  innovation program under the Marie Skłodowska-Curie Grant No. 754411 for support.
  W.G.U. thanks the Natural Science and Engineering Research Council of Canada, the
  Hagler Institute of Texas A&M University, the Helmholz Inst HZDR, Germany for support
  while this work was being done.
article_number: '042216'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Fumika
  full_name: Suzuki, Fumika
  id: 650C99FC-1079-11EA-A3C0-73AE3DDC885E
  last_name: Suzuki
  orcid: 0000-0003-4982-5970
- first_name: William G.
  full_name: Unruh, William G.
  last_name: Unruh
citation:
  ama: Suzuki F, Unruh WG. Numerical quantum clock simulations for measuring tunneling
    times. <i>Physical Review A</i>. 2023;107(4). doi:<a href="https://doi.org/10.1103/PhysRevA.107.042216">10.1103/PhysRevA.107.042216</a>
  apa: Suzuki, F., &#38; Unruh, W. G. (2023). Numerical quantum clock simulations
    for measuring tunneling times. <i>Physical Review A</i>. American Physical Society.
    <a href="https://doi.org/10.1103/PhysRevA.107.042216">https://doi.org/10.1103/PhysRevA.107.042216</a>
  chicago: Suzuki, Fumika, and William G. Unruh. “Numerical Quantum Clock Simulations
    for Measuring Tunneling Times.” <i>Physical Review A</i>. American Physical Society,
    2023. <a href="https://doi.org/10.1103/PhysRevA.107.042216">https://doi.org/10.1103/PhysRevA.107.042216</a>.
  ieee: F. Suzuki and W. G. Unruh, “Numerical quantum clock simulations for measuring
    tunneling times,” <i>Physical Review A</i>, vol. 107, no. 4. American Physical
    Society, 2023.
  ista: Suzuki F, Unruh WG. 2023. Numerical quantum clock simulations for measuring
    tunneling times. Physical Review A. 107(4), 042216.
  mla: Suzuki, Fumika, and William G. Unruh. “Numerical Quantum Clock Simulations
    for Measuring Tunneling Times.” <i>Physical Review A</i>, vol. 107, no. 4, 042216,
    American Physical Society, 2023, doi:<a href="https://doi.org/10.1103/PhysRevA.107.042216">10.1103/PhysRevA.107.042216</a>.
  short: F. Suzuki, W.G. Unruh, Physical Review A 107 (2023).
date_created: 2023-05-07T22:01:03Z
date_published: 2023-04-20T00:00:00Z
date_updated: 2023-08-01T14:33:21Z
day: '20'
department:
- _id: MiLe
doi: 10.1103/PhysRevA.107.042216
ec_funded: 1
external_id:
  arxiv:
  - '2207.13130'
  isi:
  - '000975799300006'
intvolume: '       107'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2207.13130
month: '04'
oa: 1
oa_version: Preprint
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Physical Review A
publication_identifier:
  eissn:
  - 2469-9934
  issn:
  - 2469-9926
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Numerical quantum clock simulations for measuring tunneling times
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 107
year: '2023'
...
---
_id: '12915'
abstract:
- lang: eng
  text: Cu2–xS and Cu2–xSe have recently been reported as promising thermoelectric
    (TE) materials for medium-temperature applications. In contrast, Cu2–xTe, another
    member of the copper chalcogenide family, typically exhibits low Seebeck coefficients
    that limit its potential to achieve a superior thermoelectric figure of merit,
    zT, particularly in the low-temperature range where this material could be effective.
    To address this, we investigated the TE performance of Cu1.5–xTe–Cu2Se nanocomposites
    by consolidating surface-engineered Cu1.5Te nanocrystals. This surface engineering
    strategy allows for precise adjustment of Cu/Te ratios and results in a reversible
    phase transition at around 600 K in Cu1.5–xTe–Cu2Se nanocomposites, as systematically
    confirmed by in situ high-temperature X-ray diffraction combined with differential
    scanning calorimetry analysis. The phase transition leads to a conversion from
    metallic-like to semiconducting-like TE properties. Additionally, a layer of Cu2Se
    generated around Cu1.5–xTe nanoparticles effectively inhibits Cu1.5–xTe grain
    growth, minimizing thermal conductivity and decreasing hole concentration. These
    properties indicate that copper telluride based compounds have a promising thermoelectric
    potential, translated into a high dimensionless zT of 1.3 at 560 K.
acknowledgement: 'The authors acknowledge support from the projects ENE2016-77798-C4-3-R
  and NANOGEN (PID2020-116093RB-C43) funded by MCIN/AEI/10.13039/501100011033/and
  by “ERDF A way of making Europe”, and by the “European Union”. K.X. and B.N. thank
  the China Scholarship Council (CSC) for scholarship support. The authors acknowledge
  funding from Generalitat de Catalunya 2017 SGR 327 and 2017 SGR 1246. ICN2 is supported
  by the Severo Ochoa program from the Spanish MCIN/AEI (Grant No.: CEX2021-001214-S).
  IREC and ICN2 are funded by the CERCA Programme/Generalitat de Catalunya. J.L. acknowledges
  support from the Natural Science Foundation of Sichuan province (2022NSFSC1229).
  Part of the present work was performed in the frameworks of Universitat de Barcelona
  Nanoscience Ph.D. program and Universitat Autònoma de Barcelona Materials Science
  Ph.D. program. Y.L. acknowledges funding from the National Natural Science Foundation
  of China (Grant No. 22209034) and the Innovation and Entrepreneurship Project of
  Overseas Returnees in Anhui Province (Grants No. 2022LCX002). K.H.L. acknowledges
  the financial support of the National Natural Science Foundation of China (Grant
  No. 22208293).'
article_processing_charge: No
article_type: original
author:
- first_name: Congcong
  full_name: Xing, Congcong
  last_name: Xing
- first_name: Yu
  full_name: Zhang, Yu
  last_name: Zhang
- first_name: Ke
  full_name: Xiao, Ke
  last_name: Xiao
- first_name: Xu
  full_name: Han, Xu
  last_name: Han
- first_name: Yu
  full_name: Liu, Yu
  id: 2A70014E-F248-11E8-B48F-1D18A9856A87
  last_name: Liu
  orcid: 0000-0001-7313-6740
- first_name: Bingfei
  full_name: Nan, Bingfei
  last_name: 'Nan'
- first_name: Maria Garcia
  full_name: Ramon, Maria Garcia
  id: 1ffff7cd-ed76-11ed-8d5f-be5e7c364eb9
  last_name: Ramon
- first_name: Khak Ho
  full_name: Lim, Khak Ho
  last_name: Lim
- first_name: Junshan
  full_name: Li, Junshan
  last_name: Li
- first_name: Jordi
  full_name: Arbiol, Jordi
  last_name: Arbiol
- first_name: Bed
  full_name: Poudel, Bed
  last_name: Poudel
- first_name: Amin
  full_name: Nozariasbmarz, Amin
  last_name: Nozariasbmarz
- first_name: Wenjie
  full_name: Li, Wenjie
  last_name: Li
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: Xing C, Zhang Y, Xiao K, et al. Thermoelectric performance of surface-engineered
    Cu1.5–xTe–Cu2Se nanocomposites. <i>ACS Nano</i>. 2023;17(9):8442-8452. doi:<a
    href="https://doi.org/10.1021/acsnano.3c00495">10.1021/acsnano.3c00495</a>
  apa: Xing, C., Zhang, Y., Xiao, K., Han, X., Liu, Y., Nan, B., … Cabot, A. (2023).
    Thermoelectric performance of surface-engineered Cu1.5–xTe–Cu2Se nanocomposites.
    <i>ACS Nano</i>. American Chemical Society. <a href="https://doi.org/10.1021/acsnano.3c00495">https://doi.org/10.1021/acsnano.3c00495</a>
  chicago: Xing, Congcong, Yu Zhang, Ke Xiao, Xu Han, Yu Liu, Bingfei Nan, Maria Garcia
    Ramon, et al. “Thermoelectric Performance of Surface-Engineered Cu1.5–XTe–Cu2Se
    Nanocomposites.” <i>ACS Nano</i>. American Chemical Society, 2023. <a href="https://doi.org/10.1021/acsnano.3c00495">https://doi.org/10.1021/acsnano.3c00495</a>.
  ieee: C. Xing <i>et al.</i>, “Thermoelectric performance of surface-engineered Cu1.5–xTe–Cu2Se
    nanocomposites,” <i>ACS Nano</i>, vol. 17, no. 9. American Chemical Society, pp.
    8442–8452, 2023.
  ista: Xing C, Zhang Y, Xiao K, Han X, Liu Y, Nan B, Ramon MG, Lim KH, Li J, Arbiol
    J, Poudel B, Nozariasbmarz A, Li W, Ibáñez M, Cabot A. 2023. Thermoelectric performance
    of surface-engineered Cu1.5–xTe–Cu2Se nanocomposites. ACS Nano. 17(9), 8442–8452.
  mla: Xing, Congcong, et al. “Thermoelectric Performance of Surface-Engineered Cu1.5–XTe–Cu2Se
    Nanocomposites.” <i>ACS Nano</i>, vol. 17, no. 9, American Chemical Society, 2023,
    pp. 8442–52, doi:<a href="https://doi.org/10.1021/acsnano.3c00495">10.1021/acsnano.3c00495</a>.
  short: C. Xing, Y. Zhang, K. Xiao, X. Han, Y. Liu, B. Nan, M.G. Ramon, K.H. Lim,
    J. Li, J. Arbiol, B. Poudel, A. Nozariasbmarz, W. Li, M. Ibáñez, A. Cabot, ACS
    Nano 17 (2023) 8442–8452.
date_created: 2023-05-07T22:01:04Z
date_published: 2023-05-09T00:00:00Z
date_updated: 2023-10-04T11:29:22Z
day: '09'
department:
- _id: MaIb
doi: 10.1021/acsnano.3c00495
external_id:
  isi:
  - '000976063200001'
  pmid:
  - '37071412'
intvolume: '        17'
isi: 1
issue: '9'
language:
- iso: eng
month: '05'
oa_version: None
page: 8442-8452
pmid: 1
publication: ACS Nano
publication_identifier:
  eissn:
  - 1936-086X
  issn:
  - 1936-0851
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Thermoelectric performance of surface-engineered Cu1.5–xTe–Cu2Se nanocomposites
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2023'
...
---
_id: '12916'
abstract:
- lang: eng
  text: "We apply a variant of the square-sieve to produce an upper bound for the
    number of rational points of bounded height on a family of surfaces that admit
    a fibration over P1 whose general fibre is a hyperelliptic curve. The implied
    constant does not depend on the coefficients of the polynomial defining the surface.\r\n"
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Dante
  full_name: Bonolis, Dante
  id: 6A459894-5FDD-11E9-AF35-BB24E6697425
  last_name: Bonolis
- first_name: Timothy D
  full_name: Browning, Timothy D
  id: 35827D50-F248-11E8-B48F-1D18A9856A87
  last_name: Browning
  orcid: 0000-0002-8314-0177
citation:
  ama: Bonolis D, Browning TD. Uniform bounds for rational points on hyperelliptic
    fibrations. <i>Annali della Scuola Normale Superiore di Pisa - Classe di Scienze</i>.
    2023;24(1):173-204. doi:<a href="https://doi.org/10.2422/2036-2145.202010_018">10.2422/2036-2145.202010_018</a>
  apa: Bonolis, D., &#38; Browning, T. D. (2023). Uniform bounds for rational points
    on hyperelliptic fibrations. <i>Annali Della Scuola Normale Superiore Di Pisa
    - Classe Di Scienze</i>. Scuola Normale Superiore - Edizioni della Normale. <a
    href="https://doi.org/10.2422/2036-2145.202010_018">https://doi.org/10.2422/2036-2145.202010_018</a>
  chicago: Bonolis, Dante, and Timothy D Browning. “Uniform Bounds for Rational Points
    on Hyperelliptic Fibrations.” <i>Annali Della Scuola Normale Superiore Di Pisa
    - Classe Di Scienze</i>. Scuola Normale Superiore - Edizioni della Normale, 2023.
    <a href="https://doi.org/10.2422/2036-2145.202010_018">https://doi.org/10.2422/2036-2145.202010_018</a>.
  ieee: D. Bonolis and T. D. Browning, “Uniform bounds for rational points on hyperelliptic
    fibrations,” <i>Annali della Scuola Normale Superiore di Pisa - Classe di Scienze</i>,
    vol. 24, no. 1. Scuola Normale Superiore - Edizioni della Normale, pp. 173–204,
    2023.
  ista: Bonolis D, Browning TD. 2023. Uniform bounds for rational points on hyperelliptic
    fibrations. Annali della Scuola Normale Superiore di Pisa - Classe di Scienze.
    24(1), 173–204.
  mla: Bonolis, Dante, and Timothy D. Browning. “Uniform Bounds for Rational Points
    on Hyperelliptic Fibrations.” <i>Annali Della Scuola Normale Superiore Di Pisa
    - Classe Di Scienze</i>, vol. 24, no. 1, Scuola Normale Superiore - Edizioni della
    Normale, 2023, pp. 173–204, doi:<a href="https://doi.org/10.2422/2036-2145.202010_018">10.2422/2036-2145.202010_018</a>.
  short: D. Bonolis, T.D. Browning, Annali Della Scuola Normale Superiore Di Pisa
    - Classe Di Scienze 24 (2023) 173–204.
date_created: 2023-05-07T22:01:04Z
date_published: 2023-02-16T00:00:00Z
date_updated: 2023-10-18T06:54:30Z
day: '16'
department:
- _id: TiBr
doi: 10.2422/2036-2145.202010_018
external_id:
  arxiv:
  - '2007.14182'
intvolume: '        24'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2007.14182
month: '02'
oa: 1
oa_version: Preprint
page: 173-204
publication: Annali della Scuola Normale Superiore di Pisa - Classe di Scienze
publication_identifier:
  eissn:
  - 2036-2145
  issn:
  - 0391-173X
publication_status: published
publisher: Scuola Normale Superiore - Edizioni della Normale
quality_controlled: '1'
scopus_import: '1'
status: public
title: Uniform bounds for rational points on hyperelliptic fibrations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2023'
...
---
_id: '12933'
abstract:
- lang: eng
  text: Datasets of the publication "Sex-specific estimation of cis and trans regulation
    of gene expression in heads and gonads of Drosophila melanogaster".
article_processing_charge: No
author:
- first_name: Gemma
  full_name: Puixeu Sala, Gemma
  id: 33AB266C-F248-11E8-B48F-1D18A9856A87
  last_name: Puixeu Sala
  orcid: 0000-0001-8330-1754
citation:
  ama: 'Puixeu Sala G. Data from: Sex-specific estimation of cis and trans regulation
    of gene expression in heads and gonads of Drosophila melanogaster. 2023. doi:<a
    href="https://doi.org/10.15479/AT:ISTA:12933">10.15479/AT:ISTA:12933</a>'
  apa: 'Puixeu Sala, G. (2023). Data from: Sex-specific estimation of cis and trans
    regulation of gene expression in heads and gonads of Drosophila melanogaster.
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:12933">https://doi.org/10.15479/AT:ISTA:12933</a>'
  chicago: 'Puixeu Sala, Gemma. “Data from: Sex-Specific Estimation of Cis and Trans
    Regulation of Gene Expression in Heads and Gonads of Drosophila Melanogaster.”
    Institute of Science and Technology Austria, 2023. <a href="https://doi.org/10.15479/AT:ISTA:12933">https://doi.org/10.15479/AT:ISTA:12933</a>.'
  ieee: 'G. Puixeu Sala, “Data from: Sex-specific estimation of cis and trans regulation
    of gene expression in heads and gonads of Drosophila melanogaster.” Institute
    of Science and Technology Austria, 2023.'
  ista: 'Puixeu Sala G. 2023. Data from: Sex-specific estimation of cis and trans
    regulation of gene expression in heads and gonads of Drosophila melanogaster,
    Institute of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:12933">10.15479/AT:ISTA:12933</a>.'
  mla: 'Puixeu Sala, Gemma. <i>Data from: Sex-Specific Estimation of Cis and Trans
    Regulation of Gene Expression in Heads and Gonads of Drosophila Melanogaster</i>.
    Institute of Science and Technology Austria, 2023, doi:<a href="https://doi.org/10.15479/AT:ISTA:12933">10.15479/AT:ISTA:12933</a>.'
  short: G. Puixeu Sala, (2023).
contributor:
- first_name: Ariana
  id: 2A0848E2-F248-11E8-B48F-1D18A9856A87
  last_name: Macon
- first_name: Beatriz
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
date_created: 2023-05-10T10:00:49Z
date_published: 2023-05-15T00:00:00Z
date_updated: 2023-12-13T12:15:36Z
day: '15'
ddc:
- '570'
department:
- _id: GradSch
- _id: NiBa
- _id: BeVi
doi: 10.15479/AT:ISTA:12933
file:
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  creator: gpuixeus
  date_created: 2023-05-10T09:41:43Z
  date_updated: 2023-05-10T09:41:43Z
  file_id: '12934'
  file_name: Dataset_S1.csv
  file_size: 8029982
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  creator: gpuixeus
  date_created: 2023-05-10T09:41:43Z
  date_updated: 2023-05-10T09:41:43Z
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  date_created: 2023-05-11T12:50:18Z
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  file_size: 4566
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  success: 1
file_date_updated: 2023-05-11T12:50:18Z
has_accepted_license: '1'
month: '05'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
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  - id: '14077'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: Sex-specific estimation of cis and trans regulation of gene expression
  in heads and gonads of Drosophila melanogaster'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
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type: research_data
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year: '2023'
...
---
_id: '12945'
abstract:
- lang: eng
  text: "basic data for use in code for experimental data analysis for manuscript
    under revision: \r\nDynamic pathogen detection and social feedback shape collective
    hygiene in ants\r\nCasillas-Pérez B, Boďová K, Grasse AV, Tkačik G, Cremer S"
acknowledged_ssus:
- _id: LifeSc
acknowledgement: This project has received funding from the European Research Council
  (ERC) under the European Union’s Horizon 2020 research and innovation programme
  (Grant No. 771402; EPIDEMICSonCHIP) to SC, from the Scientific Grant Agency of the
  Slovak Republic (Grant No. 1/0521/20) to KB, and the Human Frontier Science Program
  (Grant No. RGP0065/2012) to GT.
article_processing_charge: No
author:
- first_name: Sylvia
  full_name: Cremer, Sylvia
  id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
  last_name: Cremer
  orcid: 0000-0002-2193-3868
citation:
  ama: 'Cremer S. Data from: “Dynamic pathogen detection and social feedback shape
    collective hygiene in ants” . 2023. doi:<a href="https://doi.org/10.15479/AT:ISTA:12945">10.15479/AT:ISTA:12945</a>'
  apa: 'Cremer, S. (2023). Data from: “Dynamic pathogen detection and social feedback
    shape collective hygiene in ants” . Institute of Science and Technology Austria.
    <a href="https://doi.org/10.15479/AT:ISTA:12945">https://doi.org/10.15479/AT:ISTA:12945</a>'
  chicago: 'Cremer, Sylvia. “Data from: ‘Dynamic Pathogen Detection and Social Feedback
    Shape Collective Hygiene in Ants’ .” Institute of Science and Technology Austria,
    2023. <a href="https://doi.org/10.15479/AT:ISTA:12945">https://doi.org/10.15479/AT:ISTA:12945</a>.'
  ieee: 'S. Cremer, “Data from: ‘Dynamic pathogen detection and social feedback shape
    collective hygiene in ants’ .” Institute of Science and Technology Austria, 2023.'
  ista: 'Cremer S. 2023. Data from: ‘Dynamic pathogen detection and social feedback
    shape collective hygiene in ants’ , Institute of Science and Technology Austria,
    <a href="https://doi.org/10.15479/AT:ISTA:12945">10.15479/AT:ISTA:12945</a>.'
  mla: 'Cremer, Sylvia. <i>Data from: “Dynamic Pathogen Detection and Social Feedback
    Shape Collective Hygiene in Ants” </i>. Institute of Science and Technology Austria,
    2023, doi:<a href="https://doi.org/10.15479/AT:ISTA:12945">10.15479/AT:ISTA:12945</a>.'
  short: S. Cremer, (2023).
contributor:
- contributor_type: data_collector
  first_name: Barbara E
  id: 351ED2AA-F248-11E8-B48F-1D18A9856A87
  last_name: Casillas Perez
- contributor_type: data_collector
  first_name: Anna V
  id: 406F989C-F248-11E8-B48F-1D18A9856A87
  last_name: Grasse
- contributor_type: researcher
  first_name: Katarina
  last_name: Bodova
- contributor_type: supervisor
  first_name: Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
date_created: 2023-05-11T21:35:17Z
date_published: 2023-05-12T00:00:00Z
date_updated: 2023-08-07T13:09:09Z
day: '12'
ddc:
- '570'
department:
- _id: SyCr
doi: 10.15479/AT:ISTA:12945
file:
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file_date_updated: 2023-05-12T08:04:08Z
has_accepted_license: '1'
keyword:
- collective behavior
- host-pathogen interactions
- social immunity
- epidemiology
- social insects
- probabilistic modeling
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '05'
oa: 1
oa_version: None
publisher: Institute of Science and Technology Austria
related_material:
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status: public
title: 'Data from: "Dynamic pathogen detection and social feedback shape collective
  hygiene in ants" '
tmp:
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  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: research_data
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year: '2023'
...
---
_id: '12949'
abstract:
- lang: eng
  text: The classical infinitesimal model is a simple and robust model for the inheritance
    of quantitative traits. In this model, a quantitative trait is expressed as the
    sum of a genetic and a non-genetic (environmental) component and the genetic component
    of offspring traits within a family follows a normal distribution around the average
    of the parents’ trait values, and has a variance that is independent of the trait
    values of the parents. Although the trait distribution across the whole population
    can be far from normal, the trait distributions within families are normally distributed
    with a variance-covariance matrix that is determined entirely by that in  the
    ancestral population and the probabilities of identity determined by the pedigree.
    Moreover, conditioning on some of the trait values within the pedigree has predictable
    effects on the mean and variance within and between families. In previous work,
    Barton et al. (2017), we showed that when trait values are determined by the sum
    of a large number of Mendelian factors, each  of small effect, one can justify
    the infinitesimal model as limit of Mendelian inheritance. It was also shown that
    under some forms of epistasis, trait values within a family are still normally
    distributed.
article_processing_charge: No
author:
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: Barton NH. The infinitesimal model with dominance. 2023. doi:<a href="https://doi.org/10.15479/AT:ISTA:12949">10.15479/AT:ISTA:12949</a>
  apa: Barton, N. H. (2023). The infinitesimal model with dominance. Institute of
    Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:12949">https://doi.org/10.15479/AT:ISTA:12949</a>
  chicago: Barton, Nicholas H. “The Infinitesimal Model with Dominance.” Institute
    of Science and Technology Austria, 2023. <a href="https://doi.org/10.15479/AT:ISTA:12949">https://doi.org/10.15479/AT:ISTA:12949</a>.
  ieee: N. H. Barton, “The infinitesimal model with dominance.” Institute of Science
    and Technology Austria, 2023.
  ista: Barton NH. 2023. The infinitesimal model with dominance, Institute of Science
    and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:12949">10.15479/AT:ISTA:12949</a>.
  mla: Barton, Nicholas H. <i>The Infinitesimal Model with Dominance</i>. Institute
    of Science and Technology Austria, 2023, doi:<a href="https://doi.org/10.15479/AT:ISTA:12949">10.15479/AT:ISTA:12949</a>.
  short: N.H. Barton, (2023).
contributor:
- contributor_type: researcher
  first_name: Amandine
  last_name: Veber
- contributor_type: researcher
  first_name: Alison
  last_name: Etheridge
date_created: 2023-05-13T09:49:09Z
date_published: 2023-05-13T00:00:00Z
date_updated: 2025-05-28T11:57:00Z
day: '13'
ddc:
- '576'
department:
- _id: NiBa
doi: 10.15479/AT:ISTA:12949
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file_date_updated: 2023-05-16T04:09:08Z
has_accepted_license: '1'
keyword:
- Quantitative genetics
- infinitesimal model
month: '05'
oa: 1
oa_version: Published Version
project:
- _id: bd6958e0-d553-11ed-ba76-86eba6a76c00
  grant_number: '101055327'
  name: Understanding the evolution of continuous genomes
publisher: Institute of Science and Technology Austria
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status: public
title: The infinitesimal model with dominance
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '12959'
abstract:
- lang: eng
  text: "This paper deals with the large-scale behaviour of dynamical optimal transport
    on Zd\r\n-periodic graphs with general lower semicontinuous and convex energy
    densities. Our main contribution is a homogenisation result that describes the
    effective behaviour of the discrete problems in terms of a continuous optimal
    transport problem. The effective energy density can be explicitly expressed in
    terms of a cell formula, which is a finite-dimensional convex programming problem
    that depends non-trivially on the local geometry of the discrete graph and the
    discrete energy density. Our homogenisation result is derived from a Γ\r\n-convergence
    result for action functionals on curves of measures, which we prove under very
    mild growth conditions on the energy density. We investigate the cell formula
    in several cases of interest, including finite-volume discretisations of the Wasserstein
    distance, where non-trivial limiting behaviour occurs."
acknowledgement: J.M. gratefully acknowledges support by the European Research Council
  (ERC) under the European Union’s Horizon 2020 research and innovation programme
  (Grant Agreement No. 716117). J.M and L.P. also acknowledge support from the Austrian
  Science Fund (FWF), grants No F65 and W1245. E.K. gratefully acknowledges support
  by the German Research Foundation through the Hausdorff Center for Mathematics and
  the Collaborative Research Center 1060. P.G. is partially funded by the Deutsche
  Forschungsgemeinschaft (DFG, German Research Foundation)—350398276. We thank the
  anonymous reviewer for the careful reading and for useful suggestions. Open access
  funding provided by Austrian Science Fund (FWF).
article_number: '143'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Peter
  full_name: Gladbach, Peter
  last_name: Gladbach
- first_name: Eva
  full_name: Kopfer, Eva
  last_name: Kopfer
- first_name: Jan
  full_name: Maas, Jan
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
- first_name: Lorenzo
  full_name: Portinale, Lorenzo
  id: 30AD2CBC-F248-11E8-B48F-1D18A9856A87
  last_name: Portinale
citation:
  ama: Gladbach P, Kopfer E, Maas J, Portinale L. Homogenisation of dynamical optimal
    transport on periodic graphs. <i>Calculus of Variations and Partial Differential
    Equations</i>. 2023;62(5). doi:<a href="https://doi.org/10.1007/s00526-023-02472-z">10.1007/s00526-023-02472-z</a>
  apa: Gladbach, P., Kopfer, E., Maas, J., &#38; Portinale, L. (2023). Homogenisation
    of dynamical optimal transport on periodic graphs. <i>Calculus of Variations and
    Partial Differential Equations</i>. Springer Nature. <a href="https://doi.org/10.1007/s00526-023-02472-z">https://doi.org/10.1007/s00526-023-02472-z</a>
  chicago: Gladbach, Peter, Eva Kopfer, Jan Maas, and Lorenzo Portinale. “Homogenisation
    of Dynamical Optimal Transport on Periodic Graphs.” <i>Calculus of Variations
    and Partial Differential Equations</i>. Springer Nature, 2023. <a href="https://doi.org/10.1007/s00526-023-02472-z">https://doi.org/10.1007/s00526-023-02472-z</a>.
  ieee: P. Gladbach, E. Kopfer, J. Maas, and L. Portinale, “Homogenisation of dynamical
    optimal transport on periodic graphs,” <i>Calculus of Variations and Partial Differential
    Equations</i>, vol. 62, no. 5. Springer Nature, 2023.
  ista: Gladbach P, Kopfer E, Maas J, Portinale L. 2023. Homogenisation of dynamical
    optimal transport on periodic graphs. Calculus of Variations and Partial Differential
    Equations. 62(5), 143.
  mla: Gladbach, Peter, et al. “Homogenisation of Dynamical Optimal Transport on Periodic
    Graphs.” <i>Calculus of Variations and Partial Differential Equations</i>, vol.
    62, no. 5, 143, Springer Nature, 2023, doi:<a href="https://doi.org/10.1007/s00526-023-02472-z">10.1007/s00526-023-02472-z</a>.
  short: P. Gladbach, E. Kopfer, J. Maas, L. Portinale, Calculus of Variations and
    Partial Differential Equations 62 (2023).
date_created: 2023-05-14T22:01:00Z
date_published: 2023-04-28T00:00:00Z
date_updated: 2023-10-04T11:34:49Z
day: '28'
ddc:
- '510'
department:
- _id: JaMa
doi: 10.1007/s00526-023-02472-z
ec_funded: 1
external_id:
  arxiv:
  - '2110.15321'
  isi:
  - '000980588900001'
file:
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  date_created: 2023-10-04T11:34:10Z
  date_updated: 2023-10-04T11:34:10Z
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has_accepted_license: '1'
intvolume: '        62'
isi: 1
issue: '5'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '716117'
  name: Optimal Transport and Stochastic Dynamics
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
  grant_number: F6504
  name: Taming Complexity in Partial Differential Systems
- _id: 260788DE-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  name: Dissipation and Dispersion in Nonlinear Partial Differential Equations
publication: Calculus of Variations and Partial Differential Equations
publication_identifier:
  eissn:
  - 1432-0835
  issn:
  - 0944-2669
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Homogenisation of dynamical optimal transport on periodic graphs
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 62
year: '2023'
...
---
_id: '12960'
abstract:
- lang: eng
  text: "Isomanifolds are the generalization of isosurfaces to arbitrary dimension
    and codimension, i.e., submanifolds of Rd defined as the zero set of some multivariate
    multivalued smooth function f:Rd→Rd−n, where n is the intrinsic dimension of the
    manifold. A natural way to approximate a smooth isomanifold M=f−1(0) is to consider
    its piecewise linear (PL) approximation M^\r\n based on a triangulation T of the
    ambient space Rd. In this paper, we describe a simple algorithm to trace isomanifolds
    from a given starting point. The algorithm works for arbitrary dimensions n and
    d, and any precision D. Our main result is that, when f (or M) has bounded complexity,
    the complexity of the algorithm is polynomial in d and δ=1/D (and unavoidably
    exponential in n). Since it is known that for δ=Ω(d2.5), M^ is O(D2)-close and
    isotopic to M\r\n, our algorithm produces a faithful PL-approximation of isomanifolds
    of bounded complexity in time polynomial in d. Combining this algorithm with dimensionality
    reduction techniques, the dependency on d in the size of M^ can be completely
    removed with high probability. We also show that the algorithm can handle isomanifolds
    with boundary and, more generally, isostratifolds. The algorithm for isomanifolds
    with boundary has been implemented and experimental results are reported, showing
    that it is practical and can handle cases that are far ahead of the state-of-the-art. "
acknowledgement: The authors have received funding from the European Research Council
  under the European Union's ERC grant greement 339025 GUDHI (Algorithmic Foundations
  of Geometric Un-derstanding  in  Higher  Dimensions).   The  first  author  was  supported  by  the  French  government,through
  the 3IA C\^ote d'Azur Investments in the Future project managed by the National
  ResearchAgency (ANR) with the reference ANR-19-P3IA-0002.  The third author was
  supported by the Eu-ropean Union's Horizon 2020 research and innovation programme
  under the Marie Sk\lodowska-Curiegrant agreement 754411 and the FWF (Austrian Science
  Fund) grant M 3073.
article_processing_charge: No
article_type: original
author:
- first_name: Jean Daniel
  full_name: Boissonnat, Jean Daniel
  last_name: Boissonnat
- first_name: Siargey
  full_name: Kachanovich, Siargey
  last_name: Kachanovich
- first_name: Mathijs
  full_name: Wintraecken, Mathijs
  id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
  last_name: Wintraecken
  orcid: 0000-0002-7472-2220
citation:
  ama: Boissonnat JD, Kachanovich S, Wintraecken M. Tracing isomanifolds in Rd in
    time polynomial in d using Coxeter–Freudenthal–Kuhn triangulations. <i>SIAM Journal
    on Computing</i>. 2023;52(2):452-486. doi:<a href="https://doi.org/10.1137/21M1412918">10.1137/21M1412918</a>
  apa: Boissonnat, J. D., Kachanovich, S., &#38; Wintraecken, M. (2023). Tracing isomanifolds
    in Rd in time polynomial in d using Coxeter–Freudenthal–Kuhn triangulations. <i>SIAM
    Journal on Computing</i>. Society for Industrial and Applied Mathematics. <a href="https://doi.org/10.1137/21M1412918">https://doi.org/10.1137/21M1412918</a>
  chicago: Boissonnat, Jean Daniel, Siargey Kachanovich, and Mathijs Wintraecken.
    “Tracing Isomanifolds in Rd in Time Polynomial in d Using Coxeter–Freudenthal–Kuhn
    Triangulations.” <i>SIAM Journal on Computing</i>. Society for Industrial and
    Applied Mathematics, 2023. <a href="https://doi.org/10.1137/21M1412918">https://doi.org/10.1137/21M1412918</a>.
  ieee: J. D. Boissonnat, S. Kachanovich, and M. Wintraecken, “Tracing isomanifolds
    in Rd in time polynomial in d using Coxeter–Freudenthal–Kuhn triangulations,”
    <i>SIAM Journal on Computing</i>, vol. 52, no. 2. Society for Industrial and Applied
    Mathematics, pp. 452–486, 2023.
  ista: Boissonnat JD, Kachanovich S, Wintraecken M. 2023. Tracing isomanifolds in
    Rd in time polynomial in d using Coxeter–Freudenthal–Kuhn triangulations. SIAM
    Journal on Computing. 52(2), 452–486.
  mla: Boissonnat, Jean Daniel, et al. “Tracing Isomanifolds in Rd in Time Polynomial
    in d Using Coxeter–Freudenthal–Kuhn Triangulations.” <i>SIAM Journal on Computing</i>,
    vol. 52, no. 2, Society for Industrial and Applied Mathematics, 2023, pp. 452–86,
    doi:<a href="https://doi.org/10.1137/21M1412918">10.1137/21M1412918</a>.
  short: J.D. Boissonnat, S. Kachanovich, M. Wintraecken, SIAM Journal on Computing
    52 (2023) 452–486.
date_created: 2023-05-14T22:01:00Z
date_published: 2023-04-30T00:00:00Z
date_updated: 2023-10-10T07:34:35Z
day: '30'
department:
- _id: HeEd
doi: 10.1137/21M1412918
ec_funded: 1
external_id:
  isi:
  - '001013183000012'
intvolume: '        52'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://hal-emse.ccsd.cnrs.fr/3IA-COTEDAZUR/hal-04083489v1
month: '04'
oa: 1
oa_version: Submitted Version
page: 452-486
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: fc390959-9c52-11eb-aca3-afa58bd282b2
  grant_number: M03073
  name: Learning and triangulating manifolds via collapses
publication: SIAM Journal on Computing
publication_identifier:
  eissn:
  - 1095-7111
  issn:
  - 0097-5397
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
related_material:
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    status: public
scopus_import: '1'
status: public
title: Tracing isomanifolds in Rd in time polynomial in d using Coxeter–Freudenthal–Kuhn
  triangulations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 52
year: '2023'
...
---
_id: '12961'
abstract:
- lang: eng
  text: 'Two notes separated by a doubling in frequency sound similar to humans. This
    “octave equivalence” is critical to perception and production of music and speech
    and occurs early in human development. Because it also occurs cross-culturally,
    a biological basis of octave equivalence has been hypothesized. Members of our
    team previousy suggested four human traits are at the root of this phenomenon:
    (1) vocal learning, (2) clear octave information in vocal harmonics, (3) differing
    vocal ranges, and (4) vocalizing together. Using cross-species studies, we can
    test how relevant these respective traits are, while controlling for enculturation
    effects and addressing questions of phylogeny. Common marmosets possess forms
    of three of the four traits, lacking differing vocal ranges. We tested 11 common
    marmosets by adapting an established head-turning paradigm, creating a parallel
    test to an important infant study. Unlike human infants, marmosets responded similarly
    to tones shifted by an octave or other intervals. Because previous studies with
    the same head-turning paradigm produced differential results to discernable acoustic
    stimuli in common marmosets, our results suggest that marmosets do not perceive
    octave equivalence. Our work suggests differing vocal ranges between adults and
    children and men and women and the way they are used in singing together may be
    critical to the development of octave equivalence.'
acknowledgement: We thank Prof. Dr. Thomas Bugnyar for supporting the study and financing
  the marmoset laboratory, and Alexandra Bohmann and the animal keeping team for their
  care. Vedrana Šlipogor was funded by University of South Bohemia postdoctoral fellowship.
article_number: e13395
article_processing_charge: No
article_type: original
author:
- first_name: Bernhard
  full_name: Wagner, Bernhard
  last_name: Wagner
- first_name: Vedrana
  full_name: Šlipogor, Vedrana
  last_name: Šlipogor
- first_name: Jinook
  full_name: Oh, Jinook
  id: 403169A4-080F-11EA-9993-BF3F3DDC885E
  last_name: Oh
  orcid: 0000-0001-7425-2372
- first_name: Marion
  full_name: Varga, Marion
  last_name: Varga
- first_name: Marisa
  full_name: Hoeschele, Marisa
  last_name: Hoeschele
citation:
  ama: Wagner B, Šlipogor V, Oh J, Varga M, Hoeschele M. A comparison between common
    marmosets (Callithrix jacchus) and human infants sheds light on traits proposed
    to be at the root of human octave equivalence. <i>Developmental Science</i>. 2023;26(5).
    doi:<a href="https://doi.org/10.1111/desc.13395">10.1111/desc.13395</a>
  apa: Wagner, B., Šlipogor, V., Oh, J., Varga, M., &#38; Hoeschele, M. (2023). A
    comparison between common marmosets (Callithrix jacchus) and human infants sheds
    light on traits proposed to be at the root of human octave equivalence. <i>Developmental
    Science</i>. Wiley. <a href="https://doi.org/10.1111/desc.13395">https://doi.org/10.1111/desc.13395</a>
  chicago: Wagner, Bernhard, Vedrana Šlipogor, Jinook Oh, Marion Varga, and Marisa
    Hoeschele. “A Comparison between Common Marmosets (Callithrix Jacchus) and Human
    Infants Sheds Light on Traits Proposed to Be at the Root of Human Octave Equivalence.”
    <i>Developmental Science</i>. Wiley, 2023. <a href="https://doi.org/10.1111/desc.13395">https://doi.org/10.1111/desc.13395</a>.
  ieee: B. Wagner, V. Šlipogor, J. Oh, M. Varga, and M. Hoeschele, “A comparison between
    common marmosets (Callithrix jacchus) and human infants sheds light on traits
    proposed to be at the root of human octave equivalence,” <i>Developmental Science</i>,
    vol. 26, no. 5. Wiley, 2023.
  ista: Wagner B, Šlipogor V, Oh J, Varga M, Hoeschele M. 2023. A comparison between
    common marmosets (Callithrix jacchus) and human infants sheds light on traits
    proposed to be at the root of human octave equivalence. Developmental Science.
    26(5), e13395.
  mla: Wagner, Bernhard, et al. “A Comparison between Common Marmosets (Callithrix
    Jacchus) and Human Infants Sheds Light on Traits Proposed to Be at the Root of
    Human Octave Equivalence.” <i>Developmental Science</i>, vol. 26, no. 5, e13395,
    Wiley, 2023, doi:<a href="https://doi.org/10.1111/desc.13395">10.1111/desc.13395</a>.
  short: B. Wagner, V. Šlipogor, J. Oh, M. Varga, M. Hoeschele, Developmental Science
    26 (2023).
date_created: 2023-05-14T22:01:00Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2023-10-04T11:37:33Z
day: '01'
department:
- _id: SyCr
doi: 10.1111/desc.13395
external_id:
  pmid:
  - '37101383'
intvolume: '        26'
issue: '5'
language:
- iso: eng
month: '09'
oa_version: None
pmid: 1
publication: Developmental Science
publication_identifier:
  eissn:
  - 1467-7687
  issn:
  - 1363-755X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: A comparison between common marmosets (Callithrix jacchus) and human infants
  sheds light on traits proposed to be at the root of human octave equivalence
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 26
year: '2023'
...
---
_id: '12964'
abstract:
- lang: eng
  text: "Pattern formation is of great importance for its contribution across different
    biological behaviours. During developmental processes for example, patterns of
    chemical gradients are\r\nestablished to determine cell fate and complex tissue
    patterns emerge to define structures such\r\nas limbs and vascular networks. Patterns
    are also seen in collectively migrating groups, for\r\ninstance traveling waves
    of density emerging in moving animal flocks as well as collectively migrating
    cells and tissues. To what extent these biological patterns arise spontaneously
    through\r\nthe local interaction of individual constituents or are dictated by
    higher level instructions is\r\nstill an open question however there is evidence
    for the involvement of both types of process.\r\nWhere patterns arise spontaneously
    there is a long standing interest in how far the interplay\r\nof mechanics, e.g.
    force generation and deformation, and chemistry, e.g. gene regulation\r\nand signaling,
    contributes to the behaviour. This is because many systems are able to both\r\nchemically
    regulate mechanical force production and chemically sense mechanical deformation,\r\nforming
    mechano-chemical feedback loops which can potentially become unstable towards\r\nspatio
    and/or temporal patterning.\r\nWe work with experimental collaborators to investigate
    the possibility that this type of\r\ninteraction drives pattern formation in biological
    systems at different scales. We focus first on\r\ntissue-level ERK-density waves
    observed during the wound healing response across different\r\nsystems where many
    previous studies have proposed that patterns depend on polarized cell\r\nmigration
    and arise from a mechanical flocking-like mechanism. By combining theory with\r\nmechanical
    and optogenetic perturbation experiments on in vitro monolayers we instead find\r\nevidence
    for mechanochemical pattern formation involving only scalar bilateral feedbacks\r\nbetween
    ERK signaling and cell contraction. We perform further modeling and experiment\r\nto
    study how this instability couples with polar cell migration in order to produce
    a robust\r\nand efficient wound healing response. In a following chapter we implement
    ERK-density\r\ncoupling and cell migration in a 2D active vertex model to investigate
    the interaction of\r\nERK-density patterning with different tissue rheologies
    and find that the spatio-temporal\r\ndynamics are able to both locally and globally
    fluidize a tissue across the solid-fluid glass\r\ntransition. In a last chapter
    we move towards lower spatial scales in the context of subcellular\r\npatterning
    of the cell cytoskeleton where we investigate the transition between phases of\r\nspatially
    homogeneous temporal oscillations and chaotic spatio-temporal patterning in the\r\ndynamics
    of myosin and ROCK activities (a motor component of the actomyosin cytoskeleton\r\nand
    its activator). Experimental evidence supports an intrinsic chemical oscillator
    which we\r\nencode in a reaction model and couple to a contractile active gel
    description of the cell cortex.\r\nThe model exhibits phases of chemical oscillations
    and contractile spatial patterning which\r\nreproduce many features of the dynamics
    seen in Drosophila oocyte epithelia in vivo. However,\r\nadditional pharmacological
    perturbations to inhibit myosin contractility leaves the role of\r\ncontractile
    instability unclear. We discuss alternative hypotheses and investigate the possibility\r\nof
    reaction-diffusion instability."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Daniel R
  full_name: Boocock, Daniel R
  id: 453AF628-F248-11E8-B48F-1D18A9856A87
  last_name: Boocock
  orcid: 0000-0002-1585-2631
citation:
  ama: Boocock DR. Mechanochemical pattern formation across biological scales. 2023.
    doi:<a href="https://doi.org/10.15479/at:ista:12964">10.15479/at:ista:12964</a>
  apa: Boocock, D. R. (2023). <i>Mechanochemical pattern formation across biological
    scales</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/at:ista:12964">https://doi.org/10.15479/at:ista:12964</a>
  chicago: Boocock, Daniel R. “Mechanochemical Pattern Formation across Biological
    Scales.” Institute of Science and Technology Austria, 2023. <a href="https://doi.org/10.15479/at:ista:12964">https://doi.org/10.15479/at:ista:12964</a>.
  ieee: D. R. Boocock, “Mechanochemical pattern formation across biological scales,”
    Institute of Science and Technology Austria, 2023.
  ista: Boocock DR. 2023. Mechanochemical pattern formation across biological scales.
    Institute of Science and Technology Austria.
  mla: Boocock, Daniel R. <i>Mechanochemical Pattern Formation across Biological Scales</i>.
    Institute of Science and Technology Austria, 2023, doi:<a href="https://doi.org/10.15479/at:ista:12964">10.15479/at:ista:12964</a>.
  short: D.R. Boocock, Mechanochemical Pattern Formation across Biological Scales,
    Institute of Science and Technology Austria, 2023.
date_created: 2023-05-15T14:52:36Z
date_published: 2023-05-17T00:00:00Z
date_updated: 2023-08-04T11:02:40Z
day: '17'
ddc:
- '530'
degree_awarded: PhD
department:
- _id: GradSch
- _id: EdHa
doi: 10.15479/at:ista:12964
ec_funded: 1
file:
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  checksum: d51240675fc6dc0e3f5dc0c902695d3a
  content_type: application/pdf
  creator: dboocock
  date_created: 2023-05-17T13:39:54Z
  date_updated: 2023-05-19T07:04:25Z
  embargo: 2024-05-17
  embargo_to: open_access
  file_id: '12988'
  file_name: thesis_boocock.pdf
  file_size: 40414730
  relation: main_file
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  creator: dboocock
  date_created: 2023-05-17T13:39:53Z
  date_updated: 2023-05-17T14:35:13Z
  file_id: '12989'
  file_name: thesis_boocock.zip
  file_size: 34338567
  relation: source_file
file_date_updated: 2023-05-19T07:04:25Z
has_accepted_license: '1'
language:
- iso: eng
month: '05'
oa_version: Published Version
page: '146'
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication_identifier:
  isbn:
  - 978-3-99078-032-9
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '8602'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
title: Mechanochemical pattern formation across biological scales
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2023'
...
---
_id: '12972'
abstract:
- lang: eng
  text: Embroidery is a long-standing and high-quality approach to making logos and
    images on textiles. Nowadays, it can also be performed via automated machines
    that weave threads with high spatial accuracy. A characteristic feature of the
    appearance of the threads is a high degree of anisotropy. The anisotropic behavior
    is caused by depositing thin but long strings of thread. As a result, the stitched
    patterns convey both color and direction. Artists leverage this anisotropic behavior
    to enhance pure color images with textures, illusions of motion, or depth cues.
    However, designing colorful embroidery patterns with prescribed directionality
    is a challenging task, one usually requiring an expert designer. In this work,
    we propose an interactive algorithm that generates machine-fabricable embroidery
    patterns from multi-chromatic images equipped with user-specified directionality
    fields.We cast the problem of finding a stitching pattern into vector theory.
    To find a suitable stitching pattern, we extract sources and sinks from the divergence
    field of the vector field extracted from the input and use them to trace streamlines.
    We further optimize the streamlines to guarantee a smooth and connected stitching
    pattern. The generated patterns approximate the color distribution constrained
    by the directionality field. To allow for further artistic control, the trade-off
    between color match and directionality match can be interactively explored via
    an intuitive slider. We showcase our approach by fabricating several embroidery
    paths.
acknowledgement: This work was supported by the European Research Council (ERC) under
  the European Union’s Horizon 2020 research and innovation program (grant agreement
  No 715767 – MATERIALIZABLE), and FWF Lise Meitner (Grant M 3319). We thank the anonymous
  reviewers for their insightful feedback; Solal Pirelli, Shardul Chiplunkar, and
  Paola Mejia for proofreading; everyone in the visual computing group at ISTA for
  inspiring lunch and coffee breaks; Thibault Tricard for help producing the results
  of Phasor Noise.
article_processing_charge: No
article_type: original
author:
- first_name: Zhenyuan
  full_name: Liu, Zhenyuan
  id: 70f0d7cf-ae65-11ec-a14f-89dfc5505b19
  last_name: Liu
  orcid: 0000-0001-9200-5690
- first_name: Michael
  full_name: Piovarci, Michael
  id: 62E473F4-5C99-11EA-A40E-AF823DDC885E
  last_name: Piovarci
- first_name: Christian
  full_name: Hafner, Christian
  id: 400429CC-F248-11E8-B48F-1D18A9856A87
  last_name: Hafner
- first_name: Raphael
  full_name: Charrondiere, Raphael
  id: a3a24133-2cc7-11ec-be88-8ddaf6f464b1
  last_name: Charrondiere
- first_name: Bernd
  full_name: Bickel, Bernd
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
citation:
  ama: Liu Z, Piovarci M, Hafner C, Charrondiere R, Bickel B. Directionality-aware
    design of embroidery patterns. <i>Computer Graphics Forum</i>. 2023;42(2):397-409.
    doi:<a href="https://doi.org/10.1111/cgf.14770 ">10.1111/cgf.14770 </a>
  apa: 'Liu, Z., Piovarci, M., Hafner, C., Charrondiere, R., &#38; Bickel, B. (2023).
    Directionality-aware design of embroidery patterns. <i>Computer Graphics Forum</i>.
    Saarbrucken, Germany: Wiley. <a href="https://doi.org/10.1111/cgf.14770 ">https://doi.org/10.1111/cgf.14770
    </a>'
  chicago: Liu, Zhenyuan, Michael Piovarci, Christian Hafner, Raphael Charrondiere,
    and Bernd Bickel. “Directionality-Aware Design of Embroidery Patterns.” <i>Computer
    Graphics Forum</i>. Wiley, 2023. <a href="https://doi.org/10.1111/cgf.14770 ">https://doi.org/10.1111/cgf.14770
    </a>.
  ieee: Z. Liu, M. Piovarci, C. Hafner, R. Charrondiere, and B. Bickel, “Directionality-aware
    design of embroidery patterns,” <i>Computer Graphics Forum</i>, vol. 42, no. 2.
    Wiley, pp. 397–409, 2023.
  ista: Liu Z, Piovarci M, Hafner C, Charrondiere R, Bickel B. 2023. Directionality-aware
    design of embroidery patterns. Computer Graphics Forum. 42(2), 397–409.
  mla: Liu, Zhenyuan, et al. “Directionality-Aware Design of Embroidery Patterns.”
    <i>Computer Graphics Forum</i>, vol. 42, no. 2, Wiley, 2023, pp. 397–409, doi:<a
    href="https://doi.org/10.1111/cgf.14770 ">10.1111/cgf.14770 </a>.
  short: Z. Liu, M. Piovarci, C. Hafner, R. Charrondiere, B. Bickel, Computer Graphics
    Forum 42 (2023) 397–409.
conference:
  end_date: 2023-05-12
  location: Saarbrucken, Germany
  name: 'EG: Eurographics'
  start_date: 2023-05-08
date_created: 2023-05-16T08:47:25Z
date_published: 2023-05-08T00:00:00Z
date_updated: 2023-08-01T14:47:05Z
day: '08'
ddc:
- '004'
department:
- _id: BeBi
doi: '10.1111/cgf.14770 '
ec_funded: 1
external_id:
  isi:
  - '001000062600033'
file:
- access_level: open_access
  checksum: 4c188c2be4745467a8790bbf5d6491aa
  content_type: application/pdf
  creator: mpiovarc
  date_created: 2023-05-16T08:28:37Z
  date_updated: 2023-05-16T08:28:37Z
  file_id: '12974'
  file_name: Zhenyuan2023.pdf
  file_size: 24003702
  relation: main_file
  success: 1
file_date_updated: 2023-05-16T08:28:37Z
has_accepted_license: '1'
intvolume: '        42'
isi: 1
issue: '2'
keyword:
- embroidery
- design
- directionality
- density
- image
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '05'
oa: 1
oa_version: Published Version
page: 397-409
project:
- _id: eb901961-77a9-11ec-83b8-f5c883a62027
  grant_number: M03319
  name: Perception-Aware Appearance Fabrication
- _id: 24F9549A-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '715767'
  name: 'MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and
    Modeling'
publication: Computer Graphics Forum
publication_identifier:
  issn:
  - 1467-8659
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Directionality-aware design of embroidery patterns
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 42
year: '2023'
...
---
_id: '12976'
abstract:
- lang: eng
  text: "3D printing based on continuous deposition of materials, such as filament-based
    3D printing, has seen widespread adoption thanks to its versatility in working
    with a wide range of materials. An important shortcoming of this type of technology
    is its limited multi-material capabilities. While there are simple hardware designs
    that enable multi-material printing in principle, the required software is heavily
    underdeveloped. A typical hardware design fuses together individual materials
    fed into a single chamber from multiple inlets before they are deposited. This
    design, however, introduces a time delay between the intended material mixture
    and its actual deposition. In this work, inspired by diverse path planning research
    in robotics, we show that this mechanical challenge can be addressed via improved
    printer control. We propose to formulate the search for optimal multi-material
    printing policies in a reinforcement\r\nlearning setup. We put forward a simple
    numerical deposition model that takes into account the non-linear material mixing
    and delayed material deposition. To validate our system we focus on color fabrication,
    a problem known for its strict requirements for varying material mixtures at a
    high spatial frequency. We demonstrate that our learned control policy outperforms
    state-of-the-art hand-crafted algorithms."
acknowledgement: This work is graciously supported by FWF Lise Meitner (Grant M 3319).
  Kang Liao sincerely thank Emiliano Luci, Chunyu Lin, and Yao Zhao for their huge
  support.
article_processing_charge: No
author:
- first_name: Kang
  full_name: Liao, Kang
  last_name: Liao
- first_name: Thibault
  full_name: Tricard, Thibault
  last_name: Tricard
- first_name: Michael
  full_name: Piovarci, Michael
  id: 62E473F4-5C99-11EA-A40E-AF823DDC885E
  last_name: Piovarci
  orcid: 0000-0002-5062-4474
- first_name: Hans-Peter
  full_name: Seidel, Hans-Peter
  last_name: Seidel
- first_name: Vahid
  full_name: Babaei, Vahid
  last_name: Babaei
citation:
  ama: 'Liao K, Tricard T, Piovarci M, Seidel H-P, Babaei V. Learning deposition policies
    for fused multi-material 3D printing. In: <i>2023 IEEE International Conference
    on Robotics and Automation</i>. Vol 2023. IEEE; 2023:12345-12352. doi:<a href="https://doi.org/10.1109/ICRA48891.2023.10160465">10.1109/ICRA48891.2023.10160465</a>'
  apa: 'Liao, K., Tricard, T., Piovarci, M., Seidel, H.-P., &#38; Babaei, V. (2023).
    Learning deposition policies for fused multi-material 3D printing. In <i>2023
    IEEE International Conference on Robotics and Automation</i> (Vol. 2023, pp. 12345–12352).
    London, United Kingdom: IEEE. <a href="https://doi.org/10.1109/ICRA48891.2023.10160465">https://doi.org/10.1109/ICRA48891.2023.10160465</a>'
  chicago: Liao, Kang, Thibault Tricard, Michael Piovarci, Hans-Peter Seidel, and
    Vahid Babaei. “Learning Deposition Policies for Fused Multi-Material 3D Printing.”
    In <i>2023 IEEE International Conference on Robotics and Automation</i>, 2023:12345–52.
    IEEE, 2023. <a href="https://doi.org/10.1109/ICRA48891.2023.10160465">https://doi.org/10.1109/ICRA48891.2023.10160465</a>.
  ieee: K. Liao, T. Tricard, M. Piovarci, H.-P. Seidel, and V. Babaei, “Learning deposition
    policies for fused multi-material 3D printing,” in <i>2023 IEEE International
    Conference on Robotics and Automation</i>, London, United Kingdom, 2023, vol.
    2023, pp. 12345–12352.
  ista: 'Liao K, Tricard T, Piovarci M, Seidel H-P, Babaei V. 2023. Learning deposition
    policies for fused multi-material 3D printing. 2023 IEEE International Conference
    on Robotics and Automation. ICRA: International Conference on Robotics and Automation
    vol. 2023, 12345–12352.'
  mla: Liao, Kang, et al. “Learning Deposition Policies for Fused Multi-Material 3D
    Printing.” <i>2023 IEEE International Conference on Robotics and Automation</i>,
    vol. 2023, IEEE, 2023, pp. 12345–52, doi:<a href="https://doi.org/10.1109/ICRA48891.2023.10160465">10.1109/ICRA48891.2023.10160465</a>.
  short: K. Liao, T. Tricard, M. Piovarci, H.-P. Seidel, V. Babaei, in:, 2023 IEEE
    International Conference on Robotics and Automation, IEEE, 2023, pp. 12345–12352.
conference:
  end_date: 2023-06-02
  location: London, United Kingdom
  name: 'ICRA: International Conference on Robotics and Automation'
  start_date: 2023-05-29
date_created: 2023-05-16T09:14:09Z
date_published: 2023-07-04T00:00:00Z
date_updated: 2023-12-13T11:20:00Z
day: '04'
ddc:
- '004'
department:
- _id: BeBi
doi: 10.1109/ICRA48891.2023.10160465
external_id:
  isi:
  - '001048371104068'
file:
- access_level: open_access
  checksum: daeaa67124777d88487f933ea3f77164
  content_type: application/pdf
  creator: mpiovarc
  date_created: 2023-05-16T09:12:05Z
  date_updated: 2023-05-16T09:12:05Z
  file_id: '12977'
  file_name: Liao2023.pdf
  file_size: 5367986
  relation: main_file
  success: 1
file_date_updated: 2023-05-16T09:12:05Z
has_accepted_license: '1'
intvolume: '      2023'
isi: 1
keyword:
- reinforcement learning
- deposition
- control
- color
- multi-filament
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
page: 12345-12352
project:
- _id: eb901961-77a9-11ec-83b8-f5c883a62027
  grant_number: M03319
  name: Perception-Aware Appearance Fabrication
publication: 2023 IEEE International Conference on Robotics and Automation
publication_identifier:
  eisbn:
  - '9798350323658'
  issn:
  - 1050-4729
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: Learning deposition policies for fused multi-material 3D printing
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2023
year: '2023'
...
