---
_id: '3846'
abstract:
- lang: eng
text: We summarize classical and recent results about two-player games played on
graphs with ω-regular objectives. These games have applications in the verification
and synthesis of reactive systems. Important distinctions are whether a graph
game is turn-based or concurrent; deterministic or stochastic; zero-sum or not.
We cluster known results and open problems according to these classifications.
acknowledgement: This research was supported in part by the ONR grant N00014-02-1-0671,
by the AFOSR MURI grant F49620-00-1-0327, and by the NSF grants CCR-9988172, CCR-0085949,
and CCR-0225610.
article_processing_charge: No
article_type: original
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
citation:
ama: Chatterjee K, Henzinger TA. A survey of stochastic ω regular games. Journal
of Computer and System Sciences. 2012;78(2):394-413. doi:10.1016/j.jcss.2011.05.002
apa: Chatterjee, K., & Henzinger, T. A. (2012). A survey of stochastic ω regular
games. Journal of Computer and System Sciences. Elsevier. https://doi.org/10.1016/j.jcss.2011.05.002
chicago: Chatterjee, Krishnendu, and Thomas A Henzinger. “A Survey of Stochastic
ω Regular Games.” Journal of Computer and System Sciences. Elsevier, 2012.
https://doi.org/10.1016/j.jcss.2011.05.002.
ieee: K. Chatterjee and T. A. Henzinger, “A survey of stochastic ω regular games,”
Journal of Computer and System Sciences, vol. 78, no. 2. Elsevier, pp.
394–413, 2012.
ista: Chatterjee K, Henzinger TA. 2012. A survey of stochastic ω regular games.
Journal of Computer and System Sciences. 78(2), 394–413.
mla: Chatterjee, Krishnendu, and Thomas A. Henzinger. “A Survey of Stochastic ω
Regular Games.” Journal of Computer and System Sciences, vol. 78, no. 2,
Elsevier, 2012, pp. 394–413, doi:10.1016/j.jcss.2011.05.002.
short: K. Chatterjee, T.A. Henzinger, Journal of Computer and System Sciences 78
(2012) 394–413.
date_created: 2018-12-11T12:05:29Z
date_published: 2012-03-02T00:00:00Z
date_updated: 2022-05-24T08:00:54Z
day: '02'
ddc:
- '000'
department:
- _id: KrCh
- _id: ToHe
doi: 10.1016/j.jcss.2011.05.002
file:
- access_level: open_access
checksum: 241b939deb4517cdd4426d49c67e3fa2
content_type: application/pdf
creator: kschuh
date_created: 2019-01-29T10:54:28Z
date_updated: 2020-07-14T12:46:17Z
file_id: '5897'
file_name: a_survey_of_stochastic_omega-regular_games.pdf
file_size: 336450
relation: main_file
file_date_updated: 2020-07-14T12:46:17Z
has_accepted_license: '1'
intvolume: ' 78'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.jcss.2011.05.002
month: '03'
oa: 1
oa_version: Submitted Version
page: 394 - 413
publication: Journal of Computer and System Sciences
publication_status: published
publisher: Elsevier
publist_id: '2341'
quality_controlled: '1'
scopus_import: '1'
status: public
title: A survey of stochastic ω regular games
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 78
year: '2012'
...
---
_id: '493'
abstract:
- lang: eng
text: 'The BCI competition IV stands in the tradition of prior BCI competitions
that aim to provide high quality neuroscientific data for open access to the scientific
community. As experienced already in prior competitions not only scientists from
the narrow field of BCI compete, but scholars with a broad variety of backgrounds
and nationalities. They include high specialists as well as students.The goals
of all BCI competitions have always been to challenge with respect to novel paradigms
and complex data. We report on the following challenges: (1) asynchronous data,
(2) synthetic, (3) multi-class continuous data, (4) sessionto-session transfer,
(5) directionally modulated MEG, (6) finger movements recorded by ECoG. As after
past competitions, our hope is that winning entries may enhance the analysis methods
of future BCIs.'
acknowledgement: "The studies were in part or completely supported by the Bundesministerium
für Bildung und Forschung (BMBF), Fkz 01IB001A, 01GQ0850, by the German Science
Foundation (DFG, contract MU 987/3-2), by the European ICT Programme Projects FP7-224631
and 216886, the World Class University Program through the National Research Foundation
of Korea funded by the Ministry of Education, Science, and Technology (Grant R31-10008),
the US Army Research Office [W911NF-08-1-0216 (Gerwin Schalk) and W911NF-07-1-0415
(Gerwin Schalk)] and the NIH [EB006356 (Gerwin Schalk) and EB000856 (Gerwin Schalk),
the WIN-Kolleg of the Heidelberg Academy of Sciences and Humanities, German Federal
Ministry of Education and Research grants 01GQ0420, 01GQ0761, 01GQ0762, and 01GQ0830,
German Research Foundation grants 550/B5 and C6, and by a scholarship from the German
National Academic Foundation. This paper only reflects the authors’ views and funding
agencies are not liable for any use that may be made of the information contained
herein.\r\n"
article_number: '55'
author:
- first_name: Michael
full_name: Tangermann, Michael
last_name: Tangermann
- first_name: Klaus
full_name: Müller, Klaus
last_name: Müller
- first_name: Ad
full_name: Aertsen, Ad
last_name: Aertsen
- first_name: Niels
full_name: Birbaumer, Niels
last_name: Birbaumer
- first_name: Christoph
full_name: Braun, Christoph
last_name: Braun
- first_name: Clemens
full_name: Brunner, Clemens
last_name: Brunner
- first_name: Robert
full_name: Leeb, Robert
last_name: Leeb
- first_name: Carsten
full_name: Mehring, Carsten
last_name: Mehring
- first_name: Kai
full_name: Miller, Kai
last_name: Miller
- first_name: Gernot
full_name: Müller Putz, Gernot
last_name: Müller Putz
- first_name: Guido
full_name: Nolte, Guido
last_name: Nolte
- first_name: Gert
full_name: Pfurtscheller, Gert
last_name: Pfurtscheller
- first_name: Hubert
full_name: Preissl, Hubert
last_name: Preissl
- first_name: Gerwin
full_name: Schalk, Gerwin
last_name: Schalk
- first_name: Alois
full_name: Schlögl, Alois
id: 45BF87EE-F248-11E8-B48F-1D18A9856A87
last_name: Schlögl
orcid: 0000-0002-5621-8100
- first_name: Carmen
full_name: Vidaurre, Carmen
last_name: Vidaurre
- first_name: Stephan
full_name: Waldert, Stephan
last_name: Waldert
- first_name: Benjamin
full_name: Blankertz, Benjamin
last_name: Blankertz
citation:
ama: Tangermann M, Müller K, Aertsen A, et al. Review of the BCI competition IV.
Frontiers in Neuroscience. 2012;6. doi:10.3389/fnins.2012.00055
apa: Tangermann, M., Müller, K., Aertsen, A., Birbaumer, N., Braun, C., Brunner,
C., … Blankertz, B. (2012). Review of the BCI competition IV. Frontiers in
Neuroscience. Frontiers Research Foundation. https://doi.org/10.3389/fnins.2012.00055
chicago: Tangermann, Michael, Klaus Müller, Ad Aertsen, Niels Birbaumer, Christoph
Braun, Clemens Brunner, Robert Leeb, et al. “Review of the BCI Competition IV.”
Frontiers in Neuroscience. Frontiers Research Foundation, 2012. https://doi.org/10.3389/fnins.2012.00055.
ieee: M. Tangermann et al., “Review of the BCI competition IV,” Frontiers
in Neuroscience, vol. 6. Frontiers Research Foundation, 2012.
ista: Tangermann M, Müller K, Aertsen A, Birbaumer N, Braun C, Brunner C, Leeb R,
Mehring C, Miller K, Müller Putz G, Nolte G, Pfurtscheller G, Preissl H, Schalk
G, Schlögl A, Vidaurre C, Waldert S, Blankertz B. 2012. Review of the BCI competition
IV. Frontiers in Neuroscience. 6, 55.
mla: Tangermann, Michael, et al. “Review of the BCI Competition IV.” Frontiers
in Neuroscience, vol. 6, 55, Frontiers Research Foundation, 2012, doi:10.3389/fnins.2012.00055.
short: M. Tangermann, K. Müller, A. Aertsen, N. Birbaumer, C. Braun, C. Brunner,
R. Leeb, C. Mehring, K. Miller, G. Müller Putz, G. Nolte, G. Pfurtscheller, H.
Preissl, G. Schalk, A. Schlögl, C. Vidaurre, S. Waldert, B. Blankertz, Frontiers
in Neuroscience 6 (2012).
date_created: 2018-12-11T11:46:46Z
date_published: 2012-07-13T00:00:00Z
date_updated: 2021-01-12T08:01:03Z
day: '13'
ddc:
- '004'
department:
- _id: ScienComp
- _id: PeJo
doi: 10.3389/fnins.2012.00055
file:
- access_level: open_access
checksum: 195238221c4b0b0f4035f6f6c16ea17c
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:18:34Z
date_updated: 2020-07-14T12:46:35Z
file_id: '5356'
file_name: IST-2018-945-v1+1_2012_Schloegl_Review_of.pdf
file_size: 2693701
relation: main_file
file_date_updated: 2020-07-14T12:46:35Z
has_accepted_license: '1'
intvolume: ' 6'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: Frontiers in Neuroscience
publication_status: published
publisher: Frontiers Research Foundation
publist_id: '7327'
pubrep_id: '945'
quality_controlled: '1'
scopus_import: 1
status: public
title: Review of the BCI competition IV
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2012'
...
---
_id: '494'
abstract:
- lang: eng
text: We solve the longstanding open problems of the blow-up involved in the translations,
when possible, of a nondeterministic Büchi word automaton (NBW) to a nondeterministic
co-Büchi word automaton (NCW) and to a deterministic co-Büchi word automaton (DCW).
For the NBW to NCW translation, the currently known upper bound is 2o(nlog n)
and the lower bound is 1.5n. We improve the upper bound to n2n and describe a
matching lower bound of 2ω(n). For the NBW to DCW translation, the currently known
upper bound is 2o(nlog n). We improve it to 2 o(n), which is asymptotically tight.
Both of our upper-bound constructions are based on a simple subset construction,
do not involve intermediate automata with richer acceptance conditions, and can
be implemented symbolically. We continue and solve the open problems of translating
nondeterministic Streett, Rabin, Muller, and parity word automata to NCW and to
DCW. Going via an intermediate NBW is not optimal and we describe direct, simple,
and asymptotically tight constructions, involving a 2o(n) blow-up. The constructions
are variants of the subset construction, providing a unified approach for translating
all common classes of automata to NCW and DCW. Beyond the theoretical importance
of the results, we point to numerous applications of the new constructions. In
particular, they imply a simple subset-construction based translation, when possible,
of LTL to deterministic Büchi word automata.
article_number: '29'
author:
- first_name: Udi
full_name: Boker, Udi
id: 31E297B6-F248-11E8-B48F-1D18A9856A87
last_name: Boker
- first_name: Orna
full_name: Kupferman, Orna
last_name: Kupferman
citation:
ama: Boker U, Kupferman O. Translating to Co-Büchi made tight, unified, and useful.
ACM Transactions on Computational Logic (TOCL). 2012;13(4). doi:10.1145/2362355.2362357
apa: Boker, U., & Kupferman, O. (2012). Translating to Co-Büchi made tight,
unified, and useful. ACM Transactions on Computational Logic (TOCL). ACM.
https://doi.org/10.1145/2362355.2362357
chicago: Boker, Udi, and Orna Kupferman. “Translating to Co-Büchi Made Tight, Unified,
and Useful.” ACM Transactions on Computational Logic (TOCL). ACM, 2012.
https://doi.org/10.1145/2362355.2362357.
ieee: U. Boker and O. Kupferman, “Translating to Co-Büchi made tight, unified, and
useful,” ACM Transactions on Computational Logic (TOCL), vol. 13, no. 4.
ACM, 2012.
ista: Boker U, Kupferman O. 2012. Translating to Co-Büchi made tight, unified, and
useful. ACM Transactions on Computational Logic (TOCL). 13(4), 29.
mla: Boker, Udi, and Orna Kupferman. “Translating to Co-Büchi Made Tight, Unified,
and Useful.” ACM Transactions on Computational Logic (TOCL), vol. 13, no.
4, 29, ACM, 2012, doi:10.1145/2362355.2362357.
short: U. Boker, O. Kupferman, ACM Transactions on Computational Logic (TOCL) 13
(2012).
date_created: 2018-12-11T11:46:47Z
date_published: 2012-10-01T00:00:00Z
date_updated: 2021-01-12T08:01:03Z
day: '01'
department:
- _id: ToHe
doi: 10.1145/2362355.2362357
intvolume: ' 13'
issue: '4'
language:
- iso: eng
month: '10'
oa_version: None
publication: ACM Transactions on Computational Logic (TOCL)
publication_status: published
publisher: ACM
publist_id: '7326'
quality_controlled: '1'
scopus_import: 1
status: public
title: Translating to Co-Büchi made tight, unified, and useful
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2012'
...
---
_id: '495'
abstract:
- lang: eng
text: An automaton with advice is a finite state automaton which has access to an
additional fixed infinite string called an advice tape. We refine the Myhill-Nerode
theorem to characterize the languages of finite strings that are accepted by automata
with advice. We do the same for tree automata with advice.
alternative_title:
- EPTCS
author:
- first_name: Alex
full_name: Kruckman, Alex
last_name: Kruckman
- first_name: Sasha
full_name: Rubin, Sasha
id: 2EC51194-F248-11E8-B48F-1D18A9856A87
last_name: Rubin
- first_name: John
full_name: Sheridan, John
last_name: Sheridan
- first_name: Ben
full_name: Zax, Ben
last_name: Zax
citation:
ama: 'Kruckman A, Rubin S, Sheridan J, Zax B. A Myhill Nerode theorem for automata
with advice. In: Proceedings GandALF 2012. Vol 96. Open Publishing Association;
2012:238-246. doi:10.4204/EPTCS.96.18'
apa: 'Kruckman, A., Rubin, S., Sheridan, J., & Zax, B. (2012). A Myhill Nerode
theorem for automata with advice. In Proceedings GandALF 2012 (Vol. 96,
pp. 238–246). Napoli, Italy: Open Publishing Association. https://doi.org/10.4204/EPTCS.96.18'
chicago: Kruckman, Alex, Sasha Rubin, John Sheridan, and Ben Zax. “A Myhill Nerode
Theorem for Automata with Advice.” In Proceedings GandALF 2012, 96:238–46.
Open Publishing Association, 2012. https://doi.org/10.4204/EPTCS.96.18.
ieee: A. Kruckman, S. Rubin, J. Sheridan, and B. Zax, “A Myhill Nerode theorem for
automata with advice,” in Proceedings GandALF 2012, Napoli, Italy, 2012,
vol. 96, pp. 238–246.
ista: 'Kruckman A, Rubin S, Sheridan J, Zax B. 2012. A Myhill Nerode theorem for
automata with advice. Proceedings GandALF 2012. GandALF: Games, Automata, Logics
and Formal Verification, EPTCS, vol. 96, 238–246.'
mla: Kruckman, Alex, et al. “A Myhill Nerode Theorem for Automata with Advice.”
Proceedings GandALF 2012, vol. 96, Open Publishing Association, 2012, pp.
238–46, doi:10.4204/EPTCS.96.18.
short: A. Kruckman, S. Rubin, J. Sheridan, B. Zax, in:, Proceedings GandALF 2012,
Open Publishing Association, 2012, pp. 238–246.
conference:
end_date: 2012-09-08
location: Napoli, Italy
name: 'GandALF: Games, Automata, Logics and Formal Verification'
start_date: 2012-09-06
date_created: 2018-12-11T11:46:47Z
date_published: 2012-10-07T00:00:00Z
date_updated: 2021-01-12T08:01:04Z
day: '07'
ddc:
- '004'
department:
- _id: KrCh
doi: 10.4204/EPTCS.96.18
ec_funded: 1
file:
- access_level: open_access
checksum: 56277f95edc9d531fa3bdc5f9579fda8
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:15:31Z
date_updated: 2020-07-14T12:46:35Z
file_id: '5152'
file_name: IST-2018-944-v1+1_2012_Rubin_A_Myhill.pdf
file_size: 97736
relation: main_file
file_date_updated: 2020-07-14T12:46:35Z
has_accepted_license: '1'
intvolume: ' 96'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 238 - 246
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
publication: Proceedings GandALF 2012
publication_status: published
publisher: Open Publishing Association
publist_id: '7325'
pubrep_id: '944'
quality_controlled: '1'
scopus_import: 1
status: public
title: A Myhill Nerode theorem for automata with advice
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 96
year: '2012'
...
---
_id: '496'
abstract:
- lang: eng
text: 'We study the expressive power of logical interpretations on the class of
scattered trees, namely those with countably many infinite branches. Scattered
trees can be thought of as the tree analogue of scattered linear orders. Every
scattered tree has an ordinal rank that reflects the structure of its infinite
branches. We prove, roughly, that trees and orders of large rank cannot be interpreted
in scattered trees of small rank. We consider a quite general notion of interpretation:
each element of the interpreted structure is represented by a set of tuples of
subsets of the interpreting tree. Our trees are countable, not necessarily finitely
branching, and may have finitely many unary predicates as labellings. We also
show how to replace injective set-interpretations in (not necessarily scattered)
trees by ''finitary'' set-interpretations.'
alternative_title:
- LICS
article_number: '6280474'
author:
- first_name: Alexander
full_name: Rabinovich, Alexander
last_name: Rabinovich
- first_name: Sasha
full_name: Rubin, Sasha
id: 2EC51194-F248-11E8-B48F-1D18A9856A87
last_name: Rubin
citation:
ama: 'Rabinovich A, Rubin S. Interpretations in trees with countably many branches.
In: IEEE; 2012. doi:10.1109/LICS.2012.65'
apa: 'Rabinovich, A., & Rubin, S. (2012). Interpretations in trees with countably
many branches. Presented at the LICS: Symposium on Logic in Computer Science,
Dubrovnik, Croatia: IEEE. https://doi.org/10.1109/LICS.2012.65'
chicago: Rabinovich, Alexander, and Sasha Rubin. “Interpretations in Trees with
Countably Many Branches.” IEEE, 2012. https://doi.org/10.1109/LICS.2012.65.
ieee: 'A. Rabinovich and S. Rubin, “Interpretations in trees with countably many
branches,” presented at the LICS: Symposium on Logic in Computer Science, Dubrovnik,
Croatia, 2012.'
ista: 'Rabinovich A, Rubin S. 2012. Interpretations in trees with countably many
branches. LICS: Symposium on Logic in Computer Science, LICS, , 6280474.'
mla: Rabinovich, Alexander, and Sasha Rubin. Interpretations in Trees with Countably
Many Branches. 6280474, IEEE, 2012, doi:10.1109/LICS.2012.65.
short: A. Rabinovich, S. Rubin, in:, IEEE, 2012.
conference:
end_date: 2012-06-28
location: Dubrovnik, Croatia
name: 'LICS: Symposium on Logic in Computer Science'
start_date: 2012-06-25
date_created: 2018-12-11T11:46:47Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2021-01-12T08:01:05Z
day: '01'
department:
- _id: KrCh
doi: 10.1109/LICS.2012.65
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arise.or.at/pubpdf/Interpretations_in_Trees_with_Countably_Many_Branches.pdf
month: '01'
oa: 1
oa_version: Preprint
project:
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
publication_status: published
publisher: IEEE
publist_id: '7324'
quality_controlled: '1'
scopus_import: 1
status: public
title: Interpretations in trees with countably many branches
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2012'
...
---
_id: '497'
abstract:
- lang: eng
text: 'One central issue in the formal design and analysis of reactive systems is
the notion of refinement that asks whether all behaviors of the implementation
is allowed by the specification. The local interpretation of behavior leads to
the notion of simulation. Alternating transition systems (ATSs) provide a general
model for composite reactive systems, and the simulation relation for ATSs is
known as alternating simulation. The simulation relation for fair transition systems
is called fair simulation. In this work our main contributions are as follows:
(1) We present an improved algorithm for fair simulation with Büchi fairness constraints;
our algorithm requires O(n 3·m) time as compared to the previous known O(n 6)-time
algorithm, where n is the number of states and m is the number of transitions.
(2) We present a game based algorithm for alternating simulation that requires
O(m2)-time as compared to the previous known O((n·m)2)-time algorithm, where n
is the number of states and m is the size of transition relation. (3) We present
an iterative algorithm for alternating simulation that matches the time complexity
of the game based algorithm, but is more space efficient than the game based algorithm.
© Krishnendu Chatterjee, Siddhesh Chaubal, and Pritish Kamath.'
alternative_title:
- LIPIcs
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Siddhesh
full_name: Chaubal, Siddhesh
last_name: Chaubal
- first_name: Pritish
full_name: Kamath, Pritish
last_name: Kamath
citation:
ama: 'Chatterjee K, Chaubal S, Kamath P. Faster algorithms for alternating refinement
relations. In: Vol 16. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2012:167-182.
doi:10.4230/LIPIcs.CSL.2012.167'
apa: 'Chatterjee, K., Chaubal, S., & Kamath, P. (2012). Faster algorithms for
alternating refinement relations (Vol. 16, pp. 167–182). Presented at the EACSL:
European Association for Computer Science Logic, Fontainebleau, France: Schloss
Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.CSL.2012.167'
chicago: Chatterjee, Krishnendu, Siddhesh Chaubal, and Pritish Kamath. “Faster Algorithms
for Alternating Refinement Relations,” 16:167–82. Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2012. https://doi.org/10.4230/LIPIcs.CSL.2012.167.
ieee: 'K. Chatterjee, S. Chaubal, and P. Kamath, “Faster algorithms for alternating
refinement relations,” presented at the EACSL: European Association for Computer
Science Logic, Fontainebleau, France, 2012, vol. 16, pp. 167–182.'
ista: 'Chatterjee K, Chaubal S, Kamath P. 2012. Faster algorithms for alternating
refinement relations. EACSL: European Association for Computer Science Logic,
LIPIcs, vol. 16, 167–182.'
mla: Chatterjee, Krishnendu, et al. Faster Algorithms for Alternating Refinement
Relations. Vol. 16, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012,
pp. 167–82, doi:10.4230/LIPIcs.CSL.2012.167.
short: K. Chatterjee, S. Chaubal, P. Kamath, in:, Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2012, pp. 167–182.
conference:
end_date: 2012-09-06
location: Fontainebleau, France
name: 'EACSL: European Association for Computer Science Logic'
start_date: 2012-09-03
date_created: 2018-12-11T11:46:48Z
date_published: 2012-09-01T00:00:00Z
date_updated: 2023-02-23T12:23:32Z
day: '01'
ddc:
- '004'
department:
- _id: KrCh
doi: 10.4230/LIPIcs.CSL.2012.167
ec_funded: 1
file:
- access_level: open_access
checksum: f1b0dd99240800db2d7dbf9b5131fe5e
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:08:50Z
date_updated: 2020-07-14T12:46:35Z
file_id: '4712'
file_name: IST-2018-943-v1+1_2012_Chatterjee_Faster_Algorithms.pdf
file_size: 471236
relation: main_file
file_date_updated: 2020-07-14T12:46:35Z
has_accepted_license: '1'
intvolume: ' 16'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '09'
oa: 1
oa_version: Published Version
page: 167 - 182
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 23499-N23
name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
name: Microsoft Research Faculty Fellowship
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '7323'
pubrep_id: '943'
quality_controlled: '1'
related_material:
record:
- id: '5378'
relation: earlier_version
status: public
scopus_import: 1
status: public
title: Faster algorithms for alternating refinement relations
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2012'
...
---
_id: '498'
abstract:
- lang: eng
text: Understanding patterns and correlates of local adaptation in heterogeneous
landscapes can provide important information in the selection of appropriate seed
sources for restoration. We assessed the extent of local adaptation of fitness
components in 12 population pairs of the perennial herb Rutidosis leptorrhynchoides
(Asteraceae) and examined whether spatial scale (0.7-600 km), environmental distance,
quantitative (QST) and neutral (FST) genetic differentiation, and size of the
local and foreign populations could predict patterns of adaptive differentiation.
Local adaptation varied among populations and fitness components. Including all
population pairs, local adaptation was observed for seedling survival, but not
for biomass, while foreign genotype advantage was observed for reproduction (number
of inflorescences). Among population pairs, local adaptation increased with QST
and local population size for biomass. QST was associated with environmental distance,
suggesting ecological selection for phenotypic divergence. However, low FST and
variation in population structure in small populations demonstrates the interaction
of gene flow and drift in constraining local adaptation in R. leptorrhynchoides.
Our study indicates that for species in heterogeneous landscapes, collecting seed
from large populations from similar environments to candidate sites is likely
to provide the most appropriate seed sources for restoration.
acknowledgement: "We thank Graham Pickup, David Steer, Linda Broadhurst, Lan Li and
Carole Elliott for technical assistance. The New\r\nSouth Wales Department of Environment
and Climate Change, ACT Parks, Conservation and Lands and the\r\nDepartment of Sustainability
and Environment in Victoria provided permits for seed and soil collection. We thank\r\nSpencer
C. H. Barrett for comments that improved the quality of the manuscript.\r\n"
author:
- first_name: Melinda
full_name: Pickup, Melinda
id: 2C78037E-F248-11E8-B48F-1D18A9856A87
last_name: Pickup
orcid: 0000-0001-6118-0541
- first_name: David
full_name: Field, David
id: 419049E2-F248-11E8-B48F-1D18A9856A87
last_name: Field
orcid: 0000-0002-4014-8478
- first_name: David
full_name: Rowell, David
last_name: Rowell
- first_name: Andrew
full_name: Young, Andrew
last_name: Young
citation:
ama: 'Pickup M, Field D, Rowell D, Young A. Predicting local adaptation in fragmented
plant populations: Implications for restoration genetics. Evolutionary Applications.
2012;5(8):913-924. doi:10.1111/j.1752-4571.2012.00284.x'
apa: 'Pickup, M., Field, D., Rowell, D., & Young, A. (2012). Predicting local
adaptation in fragmented plant populations: Implications for restoration genetics.
Evolutionary Applications. Wiley-Blackwell. https://doi.org/10.1111/j.1752-4571.2012.00284.x'
chicago: 'Pickup, Melinda, David Field, David Rowell, and Andrew Young. “Predicting
Local Adaptation in Fragmented Plant Populations: Implications for Restoration
Genetics.” Evolutionary Applications. Wiley-Blackwell, 2012. https://doi.org/10.1111/j.1752-4571.2012.00284.x.'
ieee: 'M. Pickup, D. Field, D. Rowell, and A. Young, “Predicting local adaptation
in fragmented plant populations: Implications for restoration genetics,” Evolutionary
Applications, vol. 5, no. 8. Wiley-Blackwell, pp. 913–924, 2012.'
ista: 'Pickup M, Field D, Rowell D, Young A. 2012. Predicting local adaptation in
fragmented plant populations: Implications for restoration genetics. Evolutionary
Applications. 5(8), 913–924.'
mla: 'Pickup, Melinda, et al. “Predicting Local Adaptation in Fragmented Plant Populations:
Implications for Restoration Genetics.” Evolutionary Applications, vol.
5, no. 8, Wiley-Blackwell, 2012, pp. 913–24, doi:10.1111/j.1752-4571.2012.00284.x.'
short: M. Pickup, D. Field, D. Rowell, A. Young, Evolutionary Applications 5 (2012)
913–924.
date_created: 2018-12-11T11:46:48Z
date_published: 2012-12-01T00:00:00Z
date_updated: 2021-01-12T08:01:06Z
day: '01'
ddc:
- '576'
department:
- _id: NiBa
doi: 10.1111/j.1752-4571.2012.00284.x
file:
- access_level: open_access
checksum: 233007138606aca5a2f75f7ae1742f43
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:10:33Z
date_updated: 2020-07-14T12:46:35Z
file_id: '4821'
file_name: IST-2018-942-v1+1_Pickup_et_al-2012-Evolutionary_Applications.pdf
file_size: 396136
relation: main_file
file_date_updated: 2020-07-14T12:46:35Z
has_accepted_license: '1'
intvolume: ' 5'
issue: '8'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 913 - 924
publication: Evolutionary Applications
publication_status: published
publisher: Wiley-Blackwell
publist_id: '7322'
pubrep_id: '942'
quality_controlled: '1'
status: public
title: 'Predicting local adaptation in fragmented plant populations: Implications
for restoration genetics'
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2012'
...
---
_id: '506'
article_processing_charge: No
article_type: original
author:
- first_name: Michael K
full_name: Sixt, Michael K
id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
last_name: Sixt
orcid: 0000-0002-6620-9179
citation:
ama: 'Sixt MK. Cell migration: Fibroblasts find a new way to get ahead. Journal
of Cell Biology. 2012;197(3):347-349. doi:10.1083/jcb.201204039'
apa: 'Sixt, M. K. (2012). Cell migration: Fibroblasts find a new way to get ahead.
Journal of Cell Biology. Rockefeller University Press. https://doi.org/10.1083/jcb.201204039'
chicago: 'Sixt, Michael K. “Cell Migration: Fibroblasts Find a New Way to Get Ahead.”
Journal of Cell Biology. Rockefeller University Press, 2012. https://doi.org/10.1083/jcb.201204039.'
ieee: 'M. K. Sixt, “Cell migration: Fibroblasts find a new way to get ahead,” Journal
of Cell Biology, vol. 197, no. 3. Rockefeller University Press, pp. 347–349,
2012.'
ista: 'Sixt MK. 2012. Cell migration: Fibroblasts find a new way to get ahead. Journal
of Cell Biology. 197(3), 347–349.'
mla: 'Sixt, Michael K. “Cell Migration: Fibroblasts Find a New Way to Get Ahead.”
Journal of Cell Biology, vol. 197, no. 3, Rockefeller University Press,
2012, pp. 347–49, doi:10.1083/jcb.201204039.'
short: M.K. Sixt, Journal of Cell Biology 197 (2012) 347–349.
date_created: 2018-12-11T11:46:51Z
date_published: 2012-04-30T00:00:00Z
date_updated: 2021-01-12T08:01:11Z
day: '30'
ddc:
- '570'
department:
- _id: MiSi
doi: 10.1083/jcb.201204039
file:
- access_level: open_access
checksum: 45c02be33ebd99fc3077d60b9c90bdfa
content_type: application/pdf
creator: kschuh
date_created: 2019-02-12T09:03:09Z
date_updated: 2020-07-14T12:46:36Z
file_id: '5957'
file_name: 2012_CellBiology_Sixt.pdf
file_size: 986566
relation: main_file
file_date_updated: 2020-07-14T12:46:36Z
has_accepted_license: '1'
intvolume: ' 197'
issue: '3'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 347 - 349
publication: Journal of Cell Biology
publication_status: published
publisher: Rockefeller University Press
publist_id: '7314'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Cell migration: Fibroblasts find a new way to get ahead'
tmp:
image: /images/cc_by_nc_sa.png
legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
BY-NC-SA 4.0)
short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 197
year: '2012'
...
---
_id: '5377'
abstract:
- lang: eng
text: 'Two-player games on graphs are central in many problems in formal verification
and program analysis such as synthesis and verification of open systems. In this
work we consider solving recursive game graphs (or pushdown game graphs) that
can model the control flow of sequential programs with recursion. While pushdown
games have been studied before with qualitative objectives, such as reachability
and ω-regular objectives, in this work we study for the first time such games
with the most well-studied quantitative objective, namely, mean-payoff objectives.
In pushdown games two types of strategies are relevant: (1) global strategies,
that depend on the entire global history; and (2) modular strategies, that have
only local memory and thus do not depend on the context of invocation, but only
on the history of the current invocation of the module. Our main results are as
follows: (1) One-player pushdown games with mean-payoff objectives under global
strategies are decidable in polynomial time. (2) Two- player pushdown games with
mean-payoff objectives under global strategies are undecidable. (3) One-player
pushdown games with mean-payoff objectives under modular strategies are NP- hard.
(4) Two-player pushdown games with mean-payoff objectives under modular strategies
can be solved in NP (i.e., both one-player and two-player pushdown games with
mean-payoff objectives under modular strategies are NP-complete). We also establish
the optimal strategy complexity showing that global strategies for mean-payoff
objectives require infinite memory even in one-player pushdown games; and memoryless
modular strategies are sufficient in two- player pushdown games. Finally we also
show that all the problems have the same complexity if the stack boundedness condition
is added, where along with the mean-payoff objective the player must also ensure
that the stack height is bounded.'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Yaron
full_name: Velner, Yaron
last_name: Velner
citation:
ama: Chatterjee K, Velner Y. Mean-Payoff Pushdown Games. IST Austria; 2012.
doi:10.15479/AT:IST-2012-0002
apa: Chatterjee, K., & Velner, Y. (2012). Mean-payoff pushdown games.
IST Austria. https://doi.org/10.15479/AT:IST-2012-0002
chicago: Chatterjee, Krishnendu, and Yaron Velner. Mean-Payoff Pushdown Games.
IST Austria, 2012. https://doi.org/10.15479/AT:IST-2012-0002.
ieee: K. Chatterjee and Y. Velner, Mean-payoff pushdown games. IST Austria,
2012.
ista: Chatterjee K, Velner Y. 2012. Mean-payoff pushdown games, IST Austria, 33p.
mla: Chatterjee, Krishnendu, and Yaron Velner. Mean-Payoff Pushdown Games.
IST Austria, 2012, doi:10.15479/AT:IST-2012-0002.
short: K. Chatterjee, Y. Velner, Mean-Payoff Pushdown Games, IST Austria, 2012.
date_created: 2018-12-12T11:38:59Z
date_published: 2012-07-02T00:00:00Z
date_updated: 2023-02-23T11:05:50Z
day: '02'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2012-0002
file:
- access_level: open_access
checksum: a03c08c1589dbb0c96183a8bcf3ab240
content_type: application/pdf
creator: system
date_created: 2018-12-12T11:54:00Z
date_updated: 2020-07-14T12:46:38Z
file_id: '5522'
file_name: IST-2012-002_IST-2012-0002.pdf
file_size: 592098
relation: main_file
file_date_updated: 2020-07-14T12:46:38Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '33'
publication_identifier:
issn:
- 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '10'
related_material:
record:
- id: '2956'
relation: later_version
status: public
status: public
title: Mean-payoff pushdown games
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2012'
...
---
_id: '5378'
abstract:
- lang: eng
text: 'One central issue in the formal design and analysis of reactive systems is
the notion of refinement that asks whether all behaviors of the implementation
is allowed by the specification. The local interpretation of behavior leads to
the notion of simulation. Alternating transition systems (ATSs) provide a general
model for composite reactive systems, and the simulation relation for ATSs is
known as alternating simulation. The simulation relation for fair transition systems
is called fair simulation. In this work our main contributions are as follows:
(1) We present an improved algorithm for fair simulation with Büchi fairness constraints;
our algorithm requires O(n3 · m) time as compared to the previous known O(n6)-time
algorithm, where n is the number of states and m is the number of transitions.
(2) We present a game based algorithm for alternating simulation that requires
O(m2)-time as compared to the previous known O((n · m)2)-time algorithm, where
n is the number of states and m is the size of transition relation. (3) We present
an iterative algorithm for alternating simulation that matches the time complexity
of the game based algorithm, but is more space efficient than the game based algorithm.'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Siddhesh
full_name: Chaubal, Siddhesh
last_name: Chaubal
- first_name: Pritish
full_name: Kamath, Pritish
last_name: Kamath
citation:
ama: Chatterjee K, Chaubal S, Kamath P. Faster Algorithms for Alternating Refinement
Relations. IST Austria; 2012. doi:10.15479/AT:IST-2012-0001
apa: Chatterjee, K., Chaubal, S., & Kamath, P. (2012). Faster algorithms
for alternating refinement relations. IST Austria. https://doi.org/10.15479/AT:IST-2012-0001
chicago: Chatterjee, Krishnendu, Siddhesh Chaubal, and Pritish Kamath. Faster
Algorithms for Alternating Refinement Relations. IST Austria, 2012. https://doi.org/10.15479/AT:IST-2012-0001.
ieee: K. Chatterjee, S. Chaubal, and P. Kamath, Faster algorithms for alternating
refinement relations. IST Austria, 2012.
ista: Chatterjee K, Chaubal S, Kamath P. 2012. Faster algorithms for alternating
refinement relations, IST Austria, 21p.
mla: Chatterjee, Krishnendu, et al. Faster Algorithms for Alternating Refinement
Relations. IST Austria, 2012, doi:10.15479/AT:IST-2012-0001.
short: K. Chatterjee, S. Chaubal, P. Kamath, Faster Algorithms for Alternating Refinement
Relations, IST Austria, 2012.
date_created: 2018-12-12T11:38:59Z
date_published: 2012-07-04T00:00:00Z
date_updated: 2023-02-23T12:21:38Z
day: '04'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2012-0001
file:
- access_level: open_access
checksum: ec8d1857cc7095d3de5107a0162ced37
content_type: application/pdf
creator: system
date_created: 2018-12-12T11:53:28Z
date_updated: 2020-07-14T12:46:39Z
file_id: '5489'
file_name: IST-2012-0001_IST-2012-0001.pdf
file_size: 394256
relation: main_file
file_date_updated: 2020-07-14T12:46:39Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '21'
publication_identifier:
issn:
- 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '14'
related_material:
record:
- id: '497'
relation: later_version
status: public
status: public
title: Faster algorithms for alternating refinement relations
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2012'
...
---
_id: '2263'
abstract:
- lang: eng
text: Nestin-cre transgenic mice have been widely used to direct recombination to
neural stem cells (NSCs) and intermediate neural progenitor cells (NPCs). Here
we report that a readily utilized, and the only commercially available, Nestin-cre
line is insufficient for directing recombination in early embryonic NSCs and NPCs.
Analysis of recombination efficiency in multiple cre-dependent reporters and a
genetic mosaic line revealed consistent temporal and spatial patterns of recombination
in NSCs and NPCs. For comparison we utilized a knock-in Emx1cre line and found
robust recombination in NSCs and NPCs in ventricular and subventricular zones
of the cerebral cortices as early as embryonic day 12.5. In addition we found
that the rate of Nestin-cre driven recombination only reaches sufficiently high
levels in NSCs and NPCs during late embryonic and early postnatal periods. These
findings are important when commercially available cre lines are considered for
directing recombination to embryonic NSCs and NPCs.
author:
- first_name: Huixuan
full_name: Liang, Huixuan
last_name: Liang
- first_name: Simon
full_name: Hippenmeyer, Simon
id: 37B36620-F248-11E8-B48F-1D18A9856A87
last_name: Hippenmeyer
orcid: 0000-0003-2279-1061
- first_name: H.
full_name: Ghashghaei, H.
last_name: Ghashghaei
citation:
ama: Liang H, Hippenmeyer S, Ghashghaei H. A Nestin-cre transgenic mouse is insufficient
for recombination in early embryonic neural progenitors. Biology open.
2012;1(12):1200-1203. doi:10.1242/bio.20122287
apa: Liang, H., Hippenmeyer, S., & Ghashghaei, H. (2012). A Nestin-cre transgenic
mouse is insufficient for recombination in early embryonic neural progenitors.
Biology Open. The Company of Biologists. https://doi.org/10.1242/bio.20122287
chicago: Liang, Huixuan, Simon Hippenmeyer, and H. Ghashghaei. “A Nestin-Cre Transgenic
Mouse Is Insufficient for Recombination in Early Embryonic Neural Progenitors.”
Biology Open. The Company of Biologists, 2012. https://doi.org/10.1242/bio.20122287.
ieee: H. Liang, S. Hippenmeyer, and H. Ghashghaei, “A Nestin-cre transgenic mouse
is insufficient for recombination in early embryonic neural progenitors,” Biology
open, vol. 1, no. 12. The Company of Biologists, pp. 1200–1203, 2012.
ista: Liang H, Hippenmeyer S, Ghashghaei H. 2012. A Nestin-cre transgenic mouse
is insufficient for recombination in early embryonic neural progenitors. Biology
open. 1(12), 1200–1203.
mla: Liang, Huixuan, et al. “A Nestin-Cre Transgenic Mouse Is Insufficient for Recombination
in Early Embryonic Neural Progenitors.” Biology Open, vol. 1, no. 12, The
Company of Biologists, 2012, pp. 1200–03, doi:10.1242/bio.20122287.
short: H. Liang, S. Hippenmeyer, H. Ghashghaei, Biology Open 1 (2012) 1200–1203.
date_created: 2018-12-11T11:56:38Z
date_published: 2012-12-15T00:00:00Z
date_updated: 2021-01-12T06:56:23Z
day: '15'
ddc:
- '576'
department:
- _id: SiHi
doi: 10.1242/bio.20122287
file:
- access_level: open_access
checksum: 605a1800b81227848c361fd6ba7d22ba
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:13:09Z
date_updated: 2020-07-14T12:45:35Z
file_id: '4990'
file_name: IST-2015-387-v1+1_1200.full.pdf
file_size: 726695
relation: main_file
file_date_updated: 2020-07-14T12:45:35Z
has_accepted_license: '1'
intvolume: ' 1'
issue: '12'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 1200 - 1203
publication: Biology open
publication_status: published
publisher: The Company of Biologists
publist_id: '4682'
pubrep_id: '387'
quality_controlled: '1'
scopus_import: 1
status: public
title: A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic
neural progenitors
tmp:
image: /images/cc_by_nc_sa.png
legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
BY-NC-SA 4.0)
short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2012'
...
---
_id: '2302'
abstract:
- lang: eng
text: 'We introduce propagation models (PMs), a formalism able to express several
kinds of equations that describe the behavior of biochemical reaction networks.
Furthermore, we introduce the propagation abstract data type (PADT), which separates
concerns regarding different numerical algorithms for the transient analysis of
biochemical reaction networks from concerns regarding their implementation, thus
allowing for portable and efficient solutions. The state of a propagation abstract
data type is given by a vector that assigns mass values to a set of nodes, and
its (next) operator propagates mass values through this set of nodes. We propose
an approximate implementation of the (next) operator, based on threshold abstraction,
which propagates only "significant" mass values and thus achieves a
compromise between efficiency and accuracy. Finally, we give three use cases for
propagation models: the chemical master equation (CME), the reaction rate equation
(RRE), and a hybrid method that combines these two equations. These three applications
use propagation models in order to propagate probabilities and/or expected values
and variances of the model''s variables.'
author:
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Maria
full_name: Mateescu, Maria
id: 3B43276C-F248-11E8-B48F-1D18A9856A87
last_name: Mateescu
citation:
ama: Henzinger TA, Mateescu M. The propagation approach for computing biochemical
reaction networks. IEEE ACM Transactions on Computational Biology and Bioinformatics.
2012;10(2):310-322. doi:10.1109/TCBB.2012.91
apa: Henzinger, T. A., & Mateescu, M. (2012). The propagation approach for computing
biochemical reaction networks. IEEE ACM Transactions on Computational Biology
and Bioinformatics. IEEE. https://doi.org/10.1109/TCBB.2012.91
chicago: Henzinger, Thomas A, and Maria Mateescu. “The Propagation Approach for
Computing Biochemical Reaction Networks.” IEEE ACM Transactions on Computational
Biology and Bioinformatics. IEEE, 2012. https://doi.org/10.1109/TCBB.2012.91.
ieee: T. A. Henzinger and M. Mateescu, “The propagation approach for computing biochemical
reaction networks,” IEEE ACM Transactions on Computational Biology and Bioinformatics,
vol. 10, no. 2. IEEE, pp. 310–322, 2012.
ista: Henzinger TA, Mateescu M. 2012. The propagation approach for computing biochemical
reaction networks. IEEE ACM Transactions on Computational Biology and Bioinformatics.
10(2), 310–322.
mla: Henzinger, Thomas A., and Maria Mateescu. “The Propagation Approach for Computing
Biochemical Reaction Networks.” IEEE ACM Transactions on Computational Biology
and Bioinformatics, vol. 10, no. 2, IEEE, 2012, pp. 310–22, doi:10.1109/TCBB.2012.91.
short: T.A. Henzinger, M. Mateescu, IEEE ACM Transactions on Computational Biology
and Bioinformatics 10 (2012) 310–322.
date_created: 2018-12-11T11:56:52Z
date_published: 2012-07-03T00:00:00Z
date_updated: 2021-01-12T06:56:38Z
day: '03'
department:
- _id: ToHe
- _id: CaGu
doi: 10.1109/TCBB.2012.91
ec_funded: 1
external_id:
pmid:
- '22778152'
intvolume: ' 10'
issue: '2'
language:
- iso: eng
month: '07'
oa_version: None
page: 310 - 322
pmid: 1
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '267989'
name: Quantitative Reactive Modeling
publication: IEEE ACM Transactions on Computational Biology and Bioinformatics
publication_status: published
publisher: IEEE
publist_id: '4625'
quality_controlled: '1'
scopus_import: 1
status: public
title: The propagation approach for computing biochemical reaction networks
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2012'
...
---
_id: '2318'
abstract:
- lang: eng
text: 'We show that bosons interacting via pair potentials with negative scattering
length form bound states for a suitable number of particles. In other words, the
absence of many-particle bound states of any kind implies the non-negativity of
the scattering length of the interaction potential. '
acknowledgement: 'Partial financial support by NSERC '
author:
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Seiringer R. Absence of bound states implies non-negativity of the scattering
length. Journal of Spectral Theory. 2012;2(3):321-328. doi:10.4171/JST/31
apa: Seiringer, R. (2012). Absence of bound states implies non-negativity of the
scattering length. Journal of Spectral Theory. European Mathematical Society.
https://doi.org/10.4171/JST/31
chicago: Seiringer, Robert. “Absence of Bound States Implies Non-Negativity of the
Scattering Length.” Journal of Spectral Theory. European Mathematical Society,
2012. https://doi.org/10.4171/JST/31.
ieee: R. Seiringer, “Absence of bound states implies non-negativity of the scattering
length,” Journal of Spectral Theory, vol. 2, no. 3. European Mathematical
Society, pp. 321–328, 2012.
ista: Seiringer R. 2012. Absence of bound states implies non-negativity of the scattering
length. Journal of Spectral Theory. 2(3), 321–328.
mla: Seiringer, Robert. “Absence of Bound States Implies Non-Negativity of the Scattering
Length.” Journal of Spectral Theory, vol. 2, no. 3, European Mathematical
Society, 2012, pp. 321–28, doi:10.4171/JST/31.
short: R. Seiringer, Journal of Spectral Theory 2 (2012) 321–328.
date_created: 2018-12-11T11:56:58Z
date_published: 2012-06-24T00:00:00Z
date_updated: 2021-01-12T06:56:44Z
day: '24'
department:
- _id: RoSe
doi: 10.4171/JST/31
intvolume: ' 2'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1204.0435
month: '06'
oa: 1
oa_version: Preprint
page: 321-328
publication: Journal of Spectral Theory
publication_status: published
publisher: European Mathematical Society
publist_id: '4609'
quality_controlled: '1'
status: public
title: Absence of bound states implies non-negativity of the scattering length
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2012'
...
---
_id: '2411'
abstract:
- lang: eng
text: The kingdom of fungi provides model organisms for biotechnology, cell biology,
genetics, and life sciences in general. Only when their phylogenetic relationships
are stably resolved, can individual results from fungal research be integrated
into a holistic picture of biology. However, and despite recent progress, many
deep relationships within the fungi remain unclear. Here, we present the first
phylogenomic study of an entire eukaryotic kingdom that uses a consistency criterion
to strengthen phylogenetic conclusions. We reason that branches (splits) recovered
with independent data and different tree reconstruction methods are likely to
reflect true evolutionary relationships. Two complementary phylogenomic data sets
based on 99 fungal genomes and 109 fungal expressed sequence tag (EST) sets analyzed
with four different tree reconstruction methods shed light from different angles
on the fungal tree of life. Eleven additional data sets address specifically the
phylogenetic position of Blastocladiomycota, Ustilaginomycotina, and Dothideomycetes,
respectively. The combined evidence from the resulting trees supports the deep-level
stability of the fungal groups toward a comprehensive natural system of the fungi.
In addition, our analysis reveals methodologically interesting aspects. Enrichment
for EST encoded data-a common practice in phylogenomic analyses-introduces a strong
bias toward slowly evolving and functionally correlated genes. Consequently, the
generalization of phylogenomic data sets as collections of randomly selected genes
cannot be taken for granted. A thorough characterization of the data to assess
possible influences on the tree reconstruction should therefore become a standard
in phylogenomic analyses.
author:
- first_name: Ingo
full_name: Ebersberger, Ingo
last_name: Ebersberger
- first_name: Ricardo
full_name: De Matos Simoes, Ricardo
last_name: De Matos Simoes
- first_name: Anne
full_name: Kupczok, Anne
id: 2BB22BC2-F248-11E8-B48F-1D18A9856A87
last_name: Kupczok
- first_name: Matthias
full_name: Gube, Matthias
last_name: Gube
- first_name: Erika
full_name: Kothe, Erika
last_name: Kothe
- first_name: Kerstin
full_name: Voigt, Kerstin
last_name: Voigt
- first_name: Arndt
full_name: Von Haeseler, Arndt
last_name: Von Haeseler
citation:
ama: Ebersberger I, De Matos Simoes R, Kupczok A, et al. A consistent phylogenetic
backbone for the fungi. Molecular Biology and Evolution. 2012;29(5):1319-1334.
doi:10.1093/molbev/msr285
apa: Ebersberger, I., De Matos Simoes, R., Kupczok, A., Gube, M., Kothe, E., Voigt,
K., & Von Haeseler, A. (2012). A consistent phylogenetic backbone for the
fungi. Molecular Biology and Evolution. Oxford University Press. https://doi.org/10.1093/molbev/msr285
chicago: Ebersberger, Ingo, Ricardo De Matos Simoes, Anne Kupczok, Matthias Gube,
Erika Kothe, Kerstin Voigt, and Arndt Von Haeseler. “A Consistent Phylogenetic
Backbone for the Fungi.” Molecular Biology and Evolution. Oxford University
Press, 2012. https://doi.org/10.1093/molbev/msr285.
ieee: I. Ebersberger et al., “A consistent phylogenetic backbone for the
fungi,” Molecular Biology and Evolution, vol. 29, no. 5. Oxford University
Press, pp. 1319–1334, 2012.
ista: Ebersberger I, De Matos Simoes R, Kupczok A, Gube M, Kothe E, Voigt K, Von
Haeseler A. 2012. A consistent phylogenetic backbone for the fungi. Molecular
Biology and Evolution. 29(5), 1319–1334.
mla: Ebersberger, Ingo, et al. “A Consistent Phylogenetic Backbone for the Fungi.”
Molecular Biology and Evolution, vol. 29, no. 5, Oxford University Press,
2012, pp. 1319–34, doi:10.1093/molbev/msr285.
short: I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt,
A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
date_created: 2018-12-11T11:57:30Z
date_published: 2012-05-01T00:00:00Z
date_updated: 2021-01-12T06:57:19Z
day: '01'
ddc:
- '570'
- '576'
department:
- _id: JoBo
doi: 10.1093/molbev/msr285
file:
- access_level: open_access
checksum: d565dcac27d1736c0c378ea6fcf22d69
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:13:30Z
date_updated: 2020-07-14T12:45:40Z
file_id: '5013'
file_name: IST-2015-384-v1+1_Mol_Biol_Evol-2012-Ebersberger-1319-34.pdf
file_size: 754922
relation: main_file
file_date_updated: 2020-07-14T12:45:40Z
has_accepted_license: '1'
intvolume: ' 29'
issue: '5'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 1319 - 1334
publication: Molecular Biology and Evolution
publication_status: published
publisher: Oxford University Press
publist_id: '4515'
pubrep_id: '384'
quality_controlled: '1'
scopus_import: 1
status: public
title: A consistent phylogenetic backbone for the fungi
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 29
year: '2012'
...
---
_id: '2715'
abstract:
- lang: eng
text: 'We consider Markov decision processes (MDPs) with specifications given as
Büchi (liveness) objectives. We consider the problem of computing the set of almost-sure
winning vertices from where the objective can be ensured with probability 1. We
study for the first time the average case complexity of the classical algorithm
for computing the set of almost-sure winning vertices for MDPs with Büchi objectives.
Our contributions are as follows: First, we show that for MDPs with constant out-degree
the expected number of iterations is at most logarithmic and the average case
running time is linear (as compared to the worst case linear number of iterations
and quadratic time complexity). Second, for the average case analysis over all
MDPs we show that the expected number of iterations is constant and the average
case running time is linear (again as compared to the worst case linear number
of iterations and quadratic time complexity). Finally we also show that given
that all MDPs are equally likely, the probability that the classical algorithm
requires more than constant number of iterations is exponentially small.'
alternative_title:
- LIPIcs
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Manas
full_name: Joglekar, Manas
last_name: Joglekar
- first_name: Nisarg
full_name: Shah, Nisarg
last_name: Shah
citation:
ama: 'Chatterjee K, Joglekar M, Shah N. Average case analysis of the classical algorithm
for Markov decision processes with Büchi objectives. In: Vol 18. Schloss Dagstuhl
- Leibniz-Zentrum für Informatik; 2012:461-473. doi:10.4230/LIPIcs.FSTTCS.2012.461'
apa: 'Chatterjee, K., Joglekar, M., & Shah, N. (2012). Average case analysis
of the classical algorithm for Markov decision processes with Büchi objectives
(Vol. 18, pp. 461–473). Presented at the FSTTCS: Foundations of Software Technology
and Theoretical Computer Science, Hyderabad, India: Schloss Dagstuhl - Leibniz-Zentrum
für Informatik. https://doi.org/10.4230/LIPIcs.FSTTCS.2012.461'
chicago: Chatterjee, Krishnendu, Manas Joglekar, and Nisarg Shah. “Average Case
Analysis of the Classical Algorithm for Markov Decision Processes with Büchi Objectives,”
18:461–73. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012. https://doi.org/10.4230/LIPIcs.FSTTCS.2012.461.
ieee: 'K. Chatterjee, M. Joglekar, and N. Shah, “Average case analysis of the classical
algorithm for Markov decision processes with Büchi objectives,” presented at the
FSTTCS: Foundations of Software Technology and Theoretical Computer Science, Hyderabad,
India, 2012, vol. 18, pp. 461–473.'
ista: 'Chatterjee K, Joglekar M, Shah N. 2012. Average case analysis of the classical
algorithm for Markov decision processes with Büchi objectives. FSTTCS: Foundations
of Software Technology and Theoretical Computer Science, LIPIcs, vol. 18, 461–473.'
mla: Chatterjee, Krishnendu, et al. Average Case Analysis of the Classical Algorithm
for Markov Decision Processes with Büchi Objectives. Vol. 18, Schloss Dagstuhl
- Leibniz-Zentrum für Informatik, 2012, pp. 461–73, doi:10.4230/LIPIcs.FSTTCS.2012.461.
short: K. Chatterjee, M. Joglekar, N. Shah, in:, Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2012, pp. 461–473.
conference:
end_date: 2012-12-17
location: Hyderabad, India
name: 'FSTTCS: Foundations of Software Technology and Theoretical Computer Science'
start_date: 2012-12-15
date_created: 2018-12-11T11:59:13Z
date_published: 2012-12-10T00:00:00Z
date_updated: 2023-02-23T10:06:04Z
day: '10'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.4230/LIPIcs.FSTTCS.2012.461
ec_funded: 1
file:
- access_level: open_access
checksum: d4d644ed1a885dbfc4fa1ef4c5724dab
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:13:53Z
date_updated: 2020-07-14T12:45:45Z
file_id: '5040'
file_name: IST-2016-525-v1+1_42_1_.pdf
file_size: 519040
relation: main_file
file_date_updated: 2020-07-14T12:45:45Z
has_accepted_license: '1'
intvolume: ' 18'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 461 - 473
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 23499-N23
name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11407
name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
name: Microsoft Research Faculty Fellowship
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '4180'
pubrep_id: '525'
quality_controlled: '1'
related_material:
record:
- id: '1598'
relation: later_version
status: public
scopus_import: 1
status: public
title: Average case analysis of the classical algorithm for Markov decision processes
with Büchi objectives
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 18
year: '2012'
...
---
_id: '2825'
abstract:
- lang: eng
text: 'We study the problem of maximum marginal prediction (MMP) in probabilistic
graphical models, a task that occurs, for example, as the Bayes optimal decision
rule under a Hamming loss. MMP is typically performed as a two-stage procedure:
one estimates each variable''s marginal probability and then forms a prediction
from the states of maximal probability. In this work we propose a simple yet effective
technique for accelerating MMP when inference is sampling-based: instead of the
above two-stage procedure we directly estimate the posterior probability of each
decision variable. This allows us to identify the point of time when we are sufficiently
certain about any individual decision. Whenever this is the case, we dynamically
prune the variables we are confident about from the underlying factor graph. Consequently,
at any time only samples of variables whose decision is still uncertain need to
be created. Experiments in two prototypical scenarios, multi-label classification
and image inpainting, show that adaptive sampling can drastically accelerate MMP
without sacrificing prediction accuracy.'
author:
- first_name: Christoph
full_name: Lampert, Christoph
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
citation:
ama: 'Lampert C. Dynamic pruning of factor graphs for maximum marginal prediction.
In: Vol 1. Neural Information Processing Systems; 2012:82-90.'
apa: 'Lampert, C. (2012). Dynamic pruning of factor graphs for maximum marginal
prediction (Vol. 1, pp. 82–90). Presented at the NIPS: Neural Information Processing
Systems, Lake Tahoe, NV, United States: Neural Information Processing Systems.'
chicago: Lampert, Christoph. “Dynamic Pruning of Factor Graphs for Maximum Marginal
Prediction,” 1:82–90. Neural Information Processing Systems, 2012.
ieee: 'C. Lampert, “Dynamic pruning of factor graphs for maximum marginal prediction,”
presented at the NIPS: Neural Information Processing Systems, Lake Tahoe, NV,
United States, 2012, vol. 1, pp. 82–90.'
ista: 'Lampert C. 2012. Dynamic pruning of factor graphs for maximum marginal prediction.
NIPS: Neural Information Processing Systems vol. 1, 82–90.'
mla: Lampert, Christoph. Dynamic Pruning of Factor Graphs for Maximum Marginal
Prediction. Vol. 1, Neural Information Processing Systems, 2012, pp. 82–90.
short: C. Lampert, in:, Neural Information Processing Systems, 2012, pp. 82–90.
conference:
end_date: 2012-12-06
location: Lake Tahoe, NV, United States
name: 'NIPS: Neural Information Processing Systems'
start_date: 2012-12-03
date_created: 2018-12-11T11:59:48Z
date_published: 2012-12-01T00:00:00Z
date_updated: 2021-01-12T06:59:59Z
day: '01'
department:
- _id: ChLa
intvolume: ' 1'
language:
- iso: eng
month: '12'
oa_version: None
page: 82 - 90
publication_status: published
publisher: Neural Information Processing Systems
publist_id: '3975'
quality_controlled: '1'
scopus_import: 1
status: public
title: Dynamic pruning of factor graphs for maximum marginal prediction
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2012'
...
---
_id: '2848'
abstract:
- lang: eng
text: We study evolutionary game theory in a setting where individuals learn from
each other. We extend the traditional approach by assuming that a population contains
individuals with different learning abilities. In particular, we explore the situation
where individuals have different search spaces, when attempting to learn the strategies
of others. The search space of an individual specifies the set of strategies learnable
by that individual. The search space is genetically given and does not change
under social evolutionary dynamics. We introduce a general framework and study
a specific example in the context of direct reciprocity. For this example, we
obtain the counter intuitive result that cooperation can only evolve for intermediate
benefit-to-cost ratios, while small and large benefit-to-cost ratios favor defection.
Our paper is a step toward making a connection between computational learning
theory and evolutionary game dynamics.
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Damien
full_name: Zufferey, Damien
id: 4397AC76-F248-11E8-B48F-1D18A9856A87
last_name: Zufferey
orcid: 0000-0002-3197-8736
- first_name: Martin
full_name: Nowak, Martin
last_name: Nowak
citation:
ama: Chatterjee K, Zufferey D, Nowak M. Evolutionary game dynamics in populations
with different learners. Journal of Theoretical Biology. 2012;301:161-173.
doi:10.1016/j.jtbi.2012.02.021
apa: Chatterjee, K., Zufferey, D., & Nowak, M. (2012). Evolutionary game dynamics
in populations with different learners. Journal of Theoretical Biology.
Elsevier. https://doi.org/10.1016/j.jtbi.2012.02.021
chicago: Chatterjee, Krishnendu, Damien Zufferey, and Martin Nowak. “Evolutionary
Game Dynamics in Populations with Different Learners.” Journal of Theoretical
Biology. Elsevier, 2012. https://doi.org/10.1016/j.jtbi.2012.02.021.
ieee: K. Chatterjee, D. Zufferey, and M. Nowak, “Evolutionary game dynamics in populations
with different learners,” Journal of Theoretical Biology, vol. 301. Elsevier,
pp. 161–173, 2012.
ista: Chatterjee K, Zufferey D, Nowak M. 2012. Evolutionary game dynamics in populations
with different learners. Journal of Theoretical Biology. 301, 161–173.
mla: Chatterjee, Krishnendu, et al. “Evolutionary Game Dynamics in Populations with
Different Learners.” Journal of Theoretical Biology, vol. 301, Elsevier,
2012, pp. 161–73, doi:10.1016/j.jtbi.2012.02.021.
short: K. Chatterjee, D. Zufferey, M. Nowak, Journal of Theoretical Biology 301
(2012) 161–173.
date_created: 2018-12-11T11:59:55Z
date_published: 2012-05-21T00:00:00Z
date_updated: 2021-01-12T07:00:12Z
day: '21'
department:
- _id: KrCh
- _id: ToHe
doi: 10.1016/j.jtbi.2012.02.021
ec_funded: 1
external_id:
pmid:
- '22394652'
intvolume: ' 301'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3322297/
month: '05'
oa: 1
oa_version: Submitted Version
page: 161 - 173
pmid: 1
project:
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
- _id: 2584A770-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 23499-N23
name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 2587B514-B435-11E9-9278-68D0E5697425
name: Microsoft Research Faculty Fellowship
publication: Journal of Theoretical Biology
publication_status: published
publisher: Elsevier
publist_id: '3946'
quality_controlled: '1'
scopus_import: 1
status: public
title: Evolutionary game dynamics in populations with different learners
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 301
year: '2012'
...
---
_id: '2849'
author:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Nataliya
full_name: Strelkova, Nataliya
last_name: Strelkova
citation:
ama: Edelsbrunner H, Strelkova N. On the configuration space of Steiner minimal
trees. Russian Mathematical Surveys. 2012;67(6):1167-1168. doi:10.1070/RM2012v067n06ABEH004820
apa: Edelsbrunner, H., & Strelkova, N. (2012). On the configuration space of
Steiner minimal trees. Russian Mathematical Surveys. IOP Publishing Ltd.
https://doi.org/10.1070/RM2012v067n06ABEH004820
chicago: Edelsbrunner, Herbert, and Nataliya Strelkova. “On the Configuration Space
of Steiner Minimal Trees.” Russian Mathematical Surveys. IOP Publishing
Ltd., 2012. https://doi.org/10.1070/RM2012v067n06ABEH004820.
ieee: H. Edelsbrunner and N. Strelkova, “On the configuration space of Steiner minimal
trees,” Russian Mathematical Surveys, vol. 67, no. 6. IOP Publishing Ltd.,
pp. 1167–1168, 2012.
ista: Edelsbrunner H, Strelkova N. 2012. On the configuration space of Steiner minimal
trees. Russian Mathematical Surveys. 67(6), 1167–1168.
mla: Edelsbrunner, Herbert, and Nataliya Strelkova. “On the Configuration Space
of Steiner Minimal Trees.” Russian Mathematical Surveys, vol. 67, no. 6,
IOP Publishing Ltd., 2012, pp. 1167–68, doi:10.1070/RM2012v067n06ABEH004820.
short: H. Edelsbrunner, N. Strelkova, Russian Mathematical Surveys 67 (2012) 1167–1168.
date_created: 2018-12-11T11:59:55Z
date_published: 2012-01-01T00:00:00Z
date_updated: 2021-01-12T07:00:13Z
day: '01'
ddc:
- '000'
department:
- _id: HeEd
doi: 10.1070/RM2012v067n06ABEH004820
file:
- access_level: open_access
checksum: 44ee8d173487e8ed41a51136816bbeb4
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:14:26Z
date_updated: 2020-07-14T12:45:51Z
file_id: '5078'
file_name: IST-2016-546-v1+1_2014-J-05-SteinerMinTrees.pdf
file_size: 392021
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file_date_updated: 2020-07-14T12:45:51Z
has_accepted_license: '1'
intvolume: ' 67'
issue: '6'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Submitted Version
page: 1167 - 1168
publication: Russian Mathematical Surveys
publication_status: published
publisher: IOP Publishing Ltd.
publist_id: '3943'
pubrep_id: '546'
quality_controlled: '1'
scopus_import: 1
status: public
title: On the configuration space of Steiner minimal trees
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 67
year: '2012'
...
---
_id: '2888'
abstract:
- lang: eng
text: Formal verification aims to improve the quality of hardware and software by
detecting errors before they do harm. At the basis of formal verification lies
the logical notion of correctness, which purports to capture whether or not a
circuit or program behaves as desired. We suggest that the boolean partition into
correct and incorrect systems falls short of the practical need to assess the
behavior of hardware and software in a more nuanced fashion against multiple criteria.
alternative_title:
- LNCS
author:
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
citation:
ama: 'Henzinger TA. Quantitative reactive models. In: Conference Proceedings
MODELS 2012. Vol 7590. Springer; 2012:1-2. doi:10.1007/978-3-642-33666-9_1'
apa: 'Henzinger, T. A. (2012). Quantitative reactive models. In Conference proceedings
MODELS 2012 (Vol. 7590, pp. 1–2). Innsbruck, Austria: Springer. https://doi.org/10.1007/978-3-642-33666-9_1'
chicago: Henzinger, Thomas A. “Quantitative Reactive Models.” In Conference Proceedings
MODELS 2012, 7590:1–2. Springer, 2012. https://doi.org/10.1007/978-3-642-33666-9_1.
ieee: T. A. Henzinger, “Quantitative reactive models,” in Conference proceedings
MODELS 2012, Innsbruck, Austria, 2012, vol. 7590, pp. 1–2.
ista: 'Henzinger TA. 2012. Quantitative reactive models. Conference proceedings
MODELS 2012. MODELS: Model-driven Engineering Languages and Systems, LNCS, vol.
7590, 1–2.'
mla: Henzinger, Thomas A. “Quantitative Reactive Models.” Conference Proceedings
MODELS 2012, vol. 7590, Springer, 2012, pp. 1–2, doi:10.1007/978-3-642-33666-9_1.
short: T.A. Henzinger, in:, Conference Proceedings MODELS 2012, Springer, 2012,
pp. 1–2.
conference:
end_date: 2012-10-05
location: Innsbruck, Austria
name: 'MODELS: Model-driven Engineering Languages and Systems'
start_date: 2012-09-30
date_created: 2018-12-11T12:00:09Z
date_published: 2012-09-01T00:00:00Z
date_updated: 2021-01-12T07:00:29Z
day: '01'
department:
- _id: ToHe
doi: 10.1007/978-3-642-33666-9_1
ec_funded: 1
intvolume: ' 7590'
language:
- iso: eng
month: '09'
oa_version: None
page: 1 - 2
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '267989'
name: Quantitative Reactive Modeling
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
publication: Conference proceedings MODELS 2012
publication_status: published
publisher: Springer
publist_id: '3870'
quality_controlled: '1'
scopus_import: 1
status: public
title: Quantitative reactive models
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 7590
year: '2012'
...
---
_id: '2890'
abstract:
- lang: eng
text: 'Systems are often specified using multiple requirements on their behavior.
In practice, these requirements can be contradictory. The classical approach to
specification, verification, and synthesis demands more detailed specifications
that resolve any contradictions in the requirements. These detailed specifications
are usually large, cumbersome, and hard to maintain or modify. In contrast, quantitative
frameworks allow the formalization of the intuitive idea that what is desired
is an implementation that comes "closest" to satisfying the mutually
incompatible requirements, according to a measure of fit that can be defined by
the requirements engineer. One flexible framework for quantifying how "well"
an implementation satisfies a specification is offered by simulation distances
that are parameterized by an error model. We introduce this framework, study its
properties, and provide an algorithmic solution for the following quantitative
synthesis question: given two (or more) behavioral requirements specified by possibly
incompatible finite-state machines, and an error model, find the finite-state
implementation that minimizes the maximal simulation distance to the given requirements.
Furthermore, we generalize the framework to handle infinite alphabets (for example,
realvalued domains). We also demonstrate how quantitative specifications based
on simulation distances might lead to smaller and easier to modify specifications.
Finally, we illustrate our approach using case studies on error correcting codes
and scheduler synthesis.'
author:
- first_name: Pavol
full_name: Cerny, Pavol
id: 4DCBEFFE-F248-11E8-B48F-1D18A9856A87
last_name: Cerny
- first_name: Sivakanth
full_name: Gopi, Sivakanth
last_name: Gopi
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Arjun
full_name: Radhakrishna, Arjun
id: 3B51CAC4-F248-11E8-B48F-1D18A9856A87
last_name: Radhakrishna
- first_name: Nishant
full_name: Totla, Nishant
last_name: Totla
citation:
ama: 'Cerny P, Gopi S, Henzinger TA, Radhakrishna A, Totla N. Synthesis from incompatible
specifications. In: Proceedings of the Tenth ACM International Conference on
Embedded Software. ACM; 2012:53-62. doi:10.1145/2380356.2380371'
apa: 'Cerny, P., Gopi, S., Henzinger, T. A., Radhakrishna, A., & Totla, N. (2012).
Synthesis from incompatible specifications. In Proceedings of the tenth ACM
international conference on Embedded software (pp. 53–62). Tampere, Finland:
ACM. https://doi.org/10.1145/2380356.2380371'
chicago: Cerny, Pavol, Sivakanth Gopi, Thomas A Henzinger, Arjun Radhakrishna, and
Nishant Totla. “Synthesis from Incompatible Specifications.” In Proceedings
of the Tenth ACM International Conference on Embedded Software, 53–62. ACM,
2012. https://doi.org/10.1145/2380356.2380371.
ieee: P. Cerny, S. Gopi, T. A. Henzinger, A. Radhakrishna, and N. Totla, “Synthesis
from incompatible specifications,” in Proceedings of the tenth ACM international
conference on Embedded software, Tampere, Finland, 2012, pp. 53–62.
ista: 'Cerny P, Gopi S, Henzinger TA, Radhakrishna A, Totla N. 2012. Synthesis from
incompatible specifications. Proceedings of the tenth ACM international conference
on Embedded software. EMSOFT: Embedded Software , 53–62.'
mla: Cerny, Pavol, et al. “Synthesis from Incompatible Specifications.” Proceedings
of the Tenth ACM International Conference on Embedded Software, ACM, 2012,
pp. 53–62, doi:10.1145/2380356.2380371.
short: P. Cerny, S. Gopi, T.A. Henzinger, A. Radhakrishna, N. Totla, in:, Proceedings
of the Tenth ACM International Conference on Embedded Software, ACM, 2012, pp.
53–62.
conference:
end_date: 2012-10-12
location: Tampere, Finland
name: 'EMSOFT: Embedded Software '
start_date: 2012-10-07
date_created: 2018-12-11T12:00:10Z
date_published: 2012-10-01T00:00:00Z
date_updated: 2021-01-12T07:00:30Z
day: '01'
department:
- _id: ToHe
doi: 10.1145/2380356.2380371
ec_funded: 1
language:
- iso: eng
month: '10'
oa_version: None
page: 53 - 62
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '267989'
name: Quantitative Reactive Modeling
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
publication: Proceedings of the tenth ACM international conference on Embedded software
publication_status: published
publisher: ACM
publist_id: '3868'
quality_controlled: '1'
scopus_import: 1
status: public
title: Synthesis from incompatible specifications
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2012'
...