---
_id: '10565'
abstract:
- lang: eng
  text: 'Enzymatic digestion of the extracellular matrix with chondroitinase-ABC reinstates
    juvenile-like plasticity in the adult cortex as it also disassembles the perineuronal
    nets (PNNs). The disadvantage of the enzyme is that it must be applied intracerebrally
    and it degrades the ECM for several weeks. Here, we provide two minimally invasive
    and transient protocols for microglia-enabled PNN disassembly in mouse cortex:
    repeated treatment with ketamine-xylazine-acepromazine (KXA) anesthesia and 60-Hz
    light entrainment. We also discuss how to analyze PNNs within microglial endosomes-lysosomes.
    For complete details on the use and execution of this protocol, please refer to
    Venturino et al. (2021).'
acknowledged_ssus:
- _id: Bio
acknowledgement: This research was supported by the European Research Council (grant
  715571 to S.S.). We thank Rouven Schulz, Michael Schunn, Claudia Gold, Gabriel Krens,
  Sarah Gorkiewicz, Margaret Maes, Jürgen Siegert, Marco Benevento, and Sara Oakeley
  for comments on the manuscript and the IST Austria Bioimaging Facility for the technical
  support.
article_number: '101012'
article_processing_charge: Yes
article_type: original
author:
- first_name: Alessandro
  full_name: Venturino, Alessandro
  id: 41CB84B2-F248-11E8-B48F-1D18A9856A87
  last_name: Venturino
  orcid: 0000-0003-2356-9403
- first_name: Sandra
  full_name: Siegert, Sandra
  id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
  last_name: Siegert
  orcid: 0000-0001-8635-0877
citation:
  ama: Venturino A, Siegert S. Minimally invasive protocols and quantification for
    microglia-mediated perineuronal net disassembly in mouse brain. <i>STAR Protocols</i>.
    2021;2(4). doi:<a href="https://doi.org/10.1016/j.xpro.2021.101012">10.1016/j.xpro.2021.101012</a>
  apa: Venturino, A., &#38; Siegert, S. (2021). Minimally invasive protocols and quantification
    for microglia-mediated perineuronal net disassembly in mouse brain. <i>STAR Protocols</i>.
    Elsevier ; Cell Press. <a href="https://doi.org/10.1016/j.xpro.2021.101012">https://doi.org/10.1016/j.xpro.2021.101012</a>
  chicago: Venturino, Alessandro, and Sandra Siegert. “Minimally Invasive Protocols
    and Quantification for Microglia-Mediated Perineuronal Net Disassembly in Mouse
    Brain.” <i>STAR Protocols</i>. Elsevier ; Cell Press, 2021. <a href="https://doi.org/10.1016/j.xpro.2021.101012">https://doi.org/10.1016/j.xpro.2021.101012</a>.
  ieee: A. Venturino and S. Siegert, “Minimally invasive protocols and quantification
    for microglia-mediated perineuronal net disassembly in mouse brain,” <i>STAR Protocols</i>,
    vol. 2, no. 4. Elsevier ; Cell Press, 2021.
  ista: Venturino A, Siegert S. 2021. Minimally invasive protocols and quantification
    for microglia-mediated perineuronal net disassembly in mouse brain. STAR Protocols.
    2(4), 101012.
  mla: Venturino, Alessandro, and Sandra Siegert. “Minimally Invasive Protocols and
    Quantification for Microglia-Mediated Perineuronal Net Disassembly in Mouse Brain.”
    <i>STAR Protocols</i>, vol. 2, no. 4, 101012, Elsevier ; Cell Press, 2021, doi:<a
    href="https://doi.org/10.1016/j.xpro.2021.101012">10.1016/j.xpro.2021.101012</a>.
  short: A. Venturino, S. Siegert, STAR Protocols 2 (2021).
date_created: 2021-12-19T23:01:32Z
date_published: 2021-12-17T00:00:00Z
date_updated: 2023-11-16T13:11:04Z
day: '17'
ddc:
- '573'
department:
- _id: SaSi
doi: 10.1016/j.xpro.2021.101012
ec_funded: 1
file:
- access_level: open_access
  checksum: 9ea2501056c5df99e84726b845e9b976
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-12-20T08:58:40Z
  date_updated: 2021-12-20T08:58:40Z
  file_id: '10570'
  file_name: 2021_STARProt_Venturino.pdf
  file_size: 6207060
  relation: main_file
  success: 1
file_date_updated: 2021-12-20T08:58:40Z
has_accepted_license: '1'
intvolume: '         2'
issue: '4'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: 25D4A630-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '715571'
  name: Microglia action towards neuronal circuit formation and function in health
    and disease
publication: STAR Protocols
publication_identifier:
  eissn:
  - 2666-1667
publication_status: published
publisher: Elsevier ; Cell Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Minimally invasive protocols and quantification for microglia-mediated perineuronal
  net disassembly in mouse brain
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2021'
...
---
_id: '10568'
abstract:
- lang: eng
  text: Genetic adaptation and phenotypic plasticity facilitate the migration into
    new habitats and enable organisms to cope with a rapidly changing environment.
    In contrast to genetic adaptation that spans multiple generations as an evolutionary
    process, phenotypic plasticity allows acclimation within the life-time of an organism.
    Genetic adaptation and phenotypic plasticity are usually studied in isolation,
    however, only by including their interactive impact, we can understand acclimation
    and adaptation in nature. We aimed to explore the contribution of adaptation and
    plasticity in coping with an abiotic (salinity) and a biotic (Vibrio bacteria)
    stressor using six different populations of the broad-nosed pipefish Syngnathus
    typhle that originated from either high [14–17 Practical Salinity Unit (PSU)]
    or low (7–11 PSU) saline environments along the German coastline of the Baltic
    Sea. We exposed wild caught animals, to either high (15 PSU) or low (7 PSU) salinity,
    representing native and novel salinity conditions and allowed animals to mate.
    After male pregnancy, offspring was split and each half was exposed to one of
    the two salinities and infected with Vibrio alginolyticus bacteria that were evolved
    at either of the two salinities in a fully reciprocal design. We investigated
    life-history traits of fathers and expression of 47 target genes in mothers and
    offspring. Pregnant males originating from high salinity exposed to low salinity
    were highly susceptible to opportunistic fungi infections resulting in decreased
    offspring size and number. In contrast, no signs of fungal infection were identified
    in fathers originating from low saline conditions suggesting that genetic adaptation
    has the potential to overcome the challenges encountered at low salinity. Offspring
    from parents with low saline origin survived better at low salinity suggesting
    genetic adaptation to low salinity. In addition, gene expression analyses of juveniles
    indicated patterns of local adaptation, trans-generational plasticity and developmental
    plasticity. In conclusion, our study suggests that pipefish are locally adapted
    to the low salinity in their environment, however, they are retaining phenotypic
    plasticity, which allows them to also cope with ancestral salinity levels and
    prevailing pathogens.
acknowledgement: We are grateful for the help of Kristina Dauven, Andreas Ebner, Janina
  Röckner, and Paulina Urban for fish collection in the field and fish maintenance.
  Furthermore, we thank Fabian Wendt for setting up the aquaria system and Tatjana
  Liese, Paulina Urban, Jakob Gismann, and Thorsten Reusch for support with DNA extraction
  and analysis of pipefish population structure. The authors acknowledge support of
  Isabel Tanger, Agnes Piecyk, Jonas Müller, Grace Walls, Sebastian Albrecht, Julia
  Böge, and Julia Stefanschitz for their support in preparing cDNA and running of
  Fluidigm chips. A special thank goes to Diana Gill for general lab support, ordering
  materials and just being the good spirit of our molecular lab, to Till Bayer for
  bioinformatics support and to Melanie Heckwolf for fruitful discussion and feedback
  on the manuscript. HG is very grateful for inspirational office space with ocean
  view provided by Lisa Hentschel and family. This manuscript has been released as
  a pre-print at BIORXIV.
article_number: '626442'
article_processing_charge: No
article_type: original
author:
- first_name: Henry
  full_name: Goehlich, Henry
  last_name: Goehlich
- first_name: Linda
  full_name: Sartoris, Linda
  id: 2B9284CA-F248-11E8-B48F-1D18A9856A87
  last_name: Sartoris
- first_name: Kim-Sara
  full_name: Wagner, Kim-Sara
  last_name: Wagner
- first_name: Carolin C.
  full_name: Wendling, Carolin C.
  last_name: Wendling
- first_name: Olivia
  full_name: Roth, Olivia
  last_name: Roth
citation:
  ama: Goehlich H, Sartoris L, Wagner K-S, Wendling CC, Roth O. Pipefish locally adapted
    to low salinity in the Baltic Sea retain phenotypic plasticity to cope with ancestral
    salinity levels. <i>Frontiers in Ecology and Evolution</i>. 2021;9. doi:<a href="https://doi.org/10.3389/fevo.2021.626442">10.3389/fevo.2021.626442</a>
  apa: Goehlich, H., Sartoris, L., Wagner, K.-S., Wendling, C. C., &#38; Roth, O.
    (2021). Pipefish locally adapted to low salinity in the Baltic Sea retain phenotypic
    plasticity to cope with ancestral salinity levels. <i>Frontiers in Ecology and
    Evolution</i>. Frontiers Media. <a href="https://doi.org/10.3389/fevo.2021.626442">https://doi.org/10.3389/fevo.2021.626442</a>
  chicago: Goehlich, Henry, Linda Sartoris, Kim-Sara Wagner, Carolin C. Wendling,
    and Olivia Roth. “Pipefish Locally Adapted to Low Salinity in the Baltic Sea Retain
    Phenotypic Plasticity to Cope with Ancestral Salinity Levels.” <i>Frontiers in
    Ecology and Evolution</i>. Frontiers Media, 2021. <a href="https://doi.org/10.3389/fevo.2021.626442">https://doi.org/10.3389/fevo.2021.626442</a>.
  ieee: H. Goehlich, L. Sartoris, K.-S. Wagner, C. C. Wendling, and O. Roth, “Pipefish
    locally adapted to low salinity in the Baltic Sea retain phenotypic plasticity
    to cope with ancestral salinity levels,” <i>Frontiers in Ecology and Evolution</i>,
    vol. 9. Frontiers Media, 2021.
  ista: Goehlich H, Sartoris L, Wagner K-S, Wendling CC, Roth O. 2021. Pipefish locally
    adapted to low salinity in the Baltic Sea retain phenotypic plasticity to cope
    with ancestral salinity levels. Frontiers in Ecology and Evolution. 9, 626442.
  mla: Goehlich, Henry, et al. “Pipefish Locally Adapted to Low Salinity in the Baltic
    Sea Retain Phenotypic Plasticity to Cope with Ancestral Salinity Levels.” <i>Frontiers
    in Ecology and Evolution</i>, vol. 9, 626442, Frontiers Media, 2021, doi:<a href="https://doi.org/10.3389/fevo.2021.626442">10.3389/fevo.2021.626442</a>.
  short: H. Goehlich, L. Sartoris, K.-S. Wagner, C.C. Wendling, O. Roth, Frontiers
    in Ecology and Evolution 9 (2021).
date_created: 2021-12-20T07:53:19Z
date_published: 2021-03-25T00:00:00Z
date_updated: 2023-08-17T06:27:22Z
day: '25'
ddc:
- '597'
department:
- _id: SyCr
doi: 10.3389/fevo.2021.626442
external_id:
  isi:
  - '000637736300001'
file:
- access_level: open_access
  checksum: 8d6e2b767bb0240a9b5a3a3555be51fd
  content_type: application/pdf
  creator: alisjak
  date_created: 2021-12-20T10:44:20Z
  date_updated: 2021-12-20T10:44:20Z
  file_id: '10572'
  file_name: 2021_Frontiers_Goehlich.pdf
  file_size: 3175085
  relation: main_file
  success: 1
file_date_updated: 2021-12-20T10:44:20Z
has_accepted_license: '1'
intvolume: '         9'
isi: 1
keyword:
- ecology
- evolution
- behavior and systematics
- trans-generational plasticity
- genetic adaptation
- local adaptation
- phenotypic plasticity
- Baltic Sea
- climate change
- salinity
- syngnathids
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Frontiers in Ecology and Evolution
publication_identifier:
  issn:
  - 2296-701X
publication_status: published
publisher: Frontiers Media
quality_controlled: '1'
scopus_import: '1'
status: public
title: Pipefish locally adapted to low salinity in the Baltic Sea retain phenotypic
  plasticity to cope with ancestral salinity levels
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 9
year: '2021'
...
---
_id: '10569'
abstract:
- lang: eng
  text: 'For animals to survive until reproduction, it is crucial that juveniles successfully
    detect potential predators and respond with appropriate behavior. The recognition
    of cues originating from predators can be innate or learned. Cues of various modalities
    might be used alone or in multi-modal combinations to detect and distinguish predators
    but studies investigating multi-modal integration in predator avoidance are scarce.
    Here, we used wild, naive tadpoles of the Neotropical poison frog Allobates femoralis
    ( Boulenger, 1884) to test their reaction to cues with two modalities from two
    different sympatrically occurring potential predators: heterospecific predatory
    Dendrobates tinctorius tadpoles and dragonfly larvae. We presented A. femoralis
    tadpoles with olfactory or visual cues, or a combination of the two, and compared
    their reaction to a water control in a between-individual design. In our trials,
    A. femoralis tadpoles reacted to multi-modal stimuli (a combination of visual
    and chemical information) originating from dragonfly larvae with avoidance but
    showed no reaction to uni-modal cues or cues from heterospecific tadpoles. In
    addition, visual cues from conspecifics increased swimming activity while cues
    from predators had no effect on tadpole activity. Our results show that A. femoralis
    tadpoles can innately recognize some predators and probably need both visual and
    chemical information to effectively avoid them. This is the first study looking
    at anti-predator behavior in poison frog tadpoles. We discuss how parental care
    might influence the expression of predator avoidance responses in tadpoles.'
acknowledgement: We are grateful to Véronique Helfer, Walter Hödl, Lisa Schretzmeyer
  and Julia Wotke, who assisted with fieldwork in French Guiana. This work was supported
  by the Austrian Science Fund (FWF) [P24788, T699 and P31518 to E.R.; P33728 to M.R.;
  J3827 to Thomas Bugnyar, Tecumseh Fitch and Ludwig Huber]; and by the Austrian Bundesministerium
  für Wissenschaft, Forschung und Wirtschaft [IS761001 to J.O. (Tecumseh Fitch, Thomas
  Bugnyar and Ludwig Huber)]. A.P. was supported by the European Union's Horizon 2020
  research and innovation programme under the Marie Sklodowska-Curie grant agreement
  no. 835530. S.A.R. was supported by the HT faculty, Lund University. We thank the
  CNRS Nouragues Ecological Research Station, which benefited from the ‘Investissement
  d'Avenir’ grants managed by the Agence Nationale de la Recherche (AnaEE France ANR-11-INBS-0001;
  Labex CEBA ANR-10-LABX-25-01). Open access funding provided by University of Vienna.
  Deposited in PMC for immediate release.
article_number: jeb243647
article_processing_charge: No
article_type: original
author:
- first_name: B
  full_name: Szabo, B
  last_name: Szabo
- first_name: R
  full_name: Mangione, R
  last_name: Mangione
- first_name: M
  full_name: Rath, M
  last_name: Rath
- first_name: A
  full_name: Pašukonis, A
  last_name: Pašukonis
- first_name: SA
  full_name: Reber, SA
  last_name: Reber
- first_name: Jinook
  full_name: Oh, Jinook
  id: 403169A4-080F-11EA-9993-BF3F3DDC885E
  last_name: Oh
  orcid: 0000-0001-7425-2372
- first_name: M
  full_name: Ringler, M
  last_name: Ringler
- first_name: E
  full_name: Ringler, E
  last_name: Ringler
citation:
  ama: Szabo B, Mangione R, Rath M, et al. Naïve poison frog tadpoles use bi-modal
    cues to avoid insect predators but not heterospecific predatory tadpoles. <i>Journal
    of Experimental Biology</i>. 2021;224(24). doi:<a href="https://doi.org/10.1242/jeb.243647">10.1242/jeb.243647</a>
  apa: Szabo, B., Mangione, R., Rath, M., Pašukonis, A., Reber, S., Oh, J., … Ringler,
    E. (2021). Naïve poison frog tadpoles use bi-modal cues to avoid insect predators
    but not heterospecific predatory tadpoles. <i>Journal of Experimental Biology</i>.
    The Company of Biologists. <a href="https://doi.org/10.1242/jeb.243647">https://doi.org/10.1242/jeb.243647</a>
  chicago: Szabo, B, R Mangione, M Rath, A Pašukonis, SA Reber, Jinook Oh, M Ringler,
    and E Ringler. “Naïve Poison Frog Tadpoles Use Bi-Modal Cues to Avoid Insect Predators
    but Not Heterospecific Predatory Tadpoles.” <i>Journal of Experimental Biology</i>.
    The Company of Biologists, 2021. <a href="https://doi.org/10.1242/jeb.243647">https://doi.org/10.1242/jeb.243647</a>.
  ieee: B. Szabo <i>et al.</i>, “Naïve poison frog tadpoles use bi-modal cues to avoid
    insect predators but not heterospecific predatory tadpoles,” <i>Journal of Experimental
    Biology</i>, vol. 224, no. 24. The Company of Biologists, 2021.
  ista: Szabo B, Mangione R, Rath M, Pašukonis A, Reber S, Oh J, Ringler M, Ringler
    E. 2021. Naïve poison frog tadpoles use bi-modal cues to avoid insect predators
    but not heterospecific predatory tadpoles. Journal of Experimental Biology. 224(24),
    jeb243647.
  mla: Szabo, B., et al. “Naïve Poison Frog Tadpoles Use Bi-Modal Cues to Avoid Insect
    Predators but Not Heterospecific Predatory Tadpoles.” <i>Journal of Experimental
    Biology</i>, vol. 224, no. 24, jeb243647, The Company of Biologists, 2021, doi:<a
    href="https://doi.org/10.1242/jeb.243647">10.1242/jeb.243647</a>.
  short: B. Szabo, R. Mangione, M. Rath, A. Pašukonis, S. Reber, J. Oh, M. Ringler,
    E. Ringler, Journal of Experimental Biology 224 (2021).
date_created: 2021-12-20T07:54:22Z
date_published: 2021-12-16T00:00:00Z
date_updated: 2023-08-17T06:26:15Z
day: '16'
ddc:
- '573'
department:
- _id: SyCr
doi: 10.1242/jeb.243647
external_id:
  isi:
  - '000738259300013'
  pmid:
  - '34845497'
file:
- access_level: open_access
  checksum: 75d13a5ec8e3b90e3bc02bd8a9c17eef
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-12-20T10:14:14Z
  date_updated: 2021-12-20T10:14:14Z
  file_id: '10571'
  file_name: 2021_JExpBio_Szabo.pdf
  file_size: 607096
  relation: main_file
  success: 1
file_date_updated: 2021-12-20T10:14:14Z
has_accepted_license: '1'
intvolume: '       224'
isi: 1
issue: '24'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Experimental Biology
publication_identifier:
  eissn:
  - 1477-9145
  issn:
  - 0022-0949
publication_status: published
publisher: The Company of Biologists
quality_controlled: '1'
status: public
title: Naïve poison frog tadpoles use bi-modal cues to avoid insect predators but
  not heterospecific predatory tadpoles
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 224
year: '2021'
...
---
_id: '10573'
abstract:
- lang: eng
  text: How tissues acquire complex shapes is a fundamental question in biology and
    regenerative medicine. Zebrafish semicircular canals form from invaginations in
    the otic epithelium (buds) that extend and fuse to form the hubs of each canal.
    We find that conventional actomyosin-driven behaviors are not required. Instead,
    local secretion of hyaluronan, made by the enzymes uridine 5′-diphosphate dehydrogenase
    (ugdh) and hyaluronan synthase 3 (has3), drives canal morphogenesis. Charged hyaluronate
    polymers osmotically swell with water and generate isotropic extracellular pressure
    to deform the overlying epithelium into buds. The mechanical anisotropy needed
    to shape buds into tubes is conferred by a polarized distribution of actomyosin
    and E-cadherin-rich membrane tethers, which we term cytocinches. Most work on
    tissue morphogenesis ascribes actomyosin contractility as the driving force, while
    the extracellular matrix shapes tissues through differential stiffness. Our work
    inverts this expectation. Hyaluronate pressure shaped by anisotropic tissue stiffness
    may be a widespread mechanism for powering morphological change in organogenesis
    and tissue engineering.
acknowledgement: We thank Ian Swinburne, Sandy Nandagopal, and Toru Kawanishi for
  support, discussions, and reagents. We thank Vanessa Barone, Joseph Nasser, and
  members of the Megason lab for useful comments on the manuscript and general feedback.
  We are grateful to the Heisenberg and Knaut labs for transgenic fish. Diagrams on
  the right in the graphical abstract were created using BioRender. This work was
  supported by NIH R01DC015478 and NIH R01GM107733 to S.G.M. A.M. was supported by
  Human Frontiers Science Program LTF and NIH K99HD098918.
article_processing_charge: No
article_type: original
author:
- first_name: Akankshi
  full_name: Munjal, Akankshi
  last_name: Munjal
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
- first_name: Tony Y.C.
  full_name: Tsai, Tony Y.C.
  last_name: Tsai
- first_name: Timothy J.
  full_name: Mitchison, Timothy J.
  last_name: Mitchison
- first_name: Sean G.
  full_name: Megason, Sean G.
  last_name: Megason
citation:
  ama: Munjal A, Hannezo EB, Tsai TYC, Mitchison TJ, Megason SG. Extracellular hyaluronate
    pressure shaped by cellular tethers drives tissue morphogenesis. <i>Cell</i>.
    2021;184(26):6313-6325.e18. doi:<a href="https://doi.org/10.1016/j.cell.2021.11.025">10.1016/j.cell.2021.11.025</a>
  apa: Munjal, A., Hannezo, E. B., Tsai, T. Y. C., Mitchison, T. J., &#38; Megason,
    S. G. (2021). Extracellular hyaluronate pressure shaped by cellular tethers drives
    tissue morphogenesis. <i>Cell</i>. Elsevier ; Cell Press. <a href="https://doi.org/10.1016/j.cell.2021.11.025">https://doi.org/10.1016/j.cell.2021.11.025</a>
  chicago: Munjal, Akankshi, Edouard B Hannezo, Tony Y.C. Tsai, Timothy J. Mitchison,
    and Sean G. Megason. “Extracellular Hyaluronate Pressure Shaped by Cellular Tethers
    Drives Tissue Morphogenesis.” <i>Cell</i>. Elsevier ; Cell Press, 2021. <a href="https://doi.org/10.1016/j.cell.2021.11.025">https://doi.org/10.1016/j.cell.2021.11.025</a>.
  ieee: A. Munjal, E. B. Hannezo, T. Y. C. Tsai, T. J. Mitchison, and S. G. Megason,
    “Extracellular hyaluronate pressure shaped by cellular tethers drives tissue morphogenesis,”
    <i>Cell</i>, vol. 184, no. 26. Elsevier ; Cell Press, p. 6313–6325.e18, 2021.
  ista: Munjal A, Hannezo EB, Tsai TYC, Mitchison TJ, Megason SG. 2021. Extracellular
    hyaluronate pressure shaped by cellular tethers drives tissue morphogenesis. Cell.
    184(26), 6313–6325.e18.
  mla: Munjal, Akankshi, et al. “Extracellular Hyaluronate Pressure Shaped by Cellular
    Tethers Drives Tissue Morphogenesis.” <i>Cell</i>, vol. 184, no. 26, Elsevier ;
    Cell Press, 2021, p. 6313–6325.e18, doi:<a href="https://doi.org/10.1016/j.cell.2021.11.025">10.1016/j.cell.2021.11.025</a>.
  short: A. Munjal, E.B. Hannezo, T.Y.C. Tsai, T.J. Mitchison, S.G. Megason, Cell
    184 (2021) 6313–6325.e18.
date_created: 2021-12-26T23:01:26Z
date_published: 2021-12-22T00:00:00Z
date_updated: 2023-08-17T06:28:25Z
day: '22'
department:
- _id: EdHa
doi: 10.1016/j.cell.2021.11.025
external_id:
  isi:
  - '000735387500002'
intvolume: '       184'
isi: 1
issue: '26'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.biorxiv.org/content/10.1101/2020.09.28.316042
month: '12'
oa: 1
oa_version: Preprint
page: 6313-6325.e18
publication: Cell
publication_identifier:
  eissn:
  - 1097-4172
  issn:
  - 0092-8674
publication_status: published
publisher: Elsevier ; Cell Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Extracellular hyaluronate pressure shaped by cellular tethers drives tissue
  morphogenesis
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 184
year: '2021'
...
---
_id: '10574'
abstract:
- lang: eng
  text: 'The understanding of material appearance perception is a complex problem
    due to interactions between material reflectance, surface geometry, and illumination.
    Recently, Serrano et al. collected the largest dataset to date with subjective
    ratings of material appearance attributes, including glossiness, metallicness,
    sharpness and contrast of reflections. In this work, we make use of their dataset
    to investigate for the first time the impact of the interactions between illumination,
    geometry, and eight different material categories in perceived appearance attributes.
    After an initial analysis, we select for further analysis the four material categories
    that cover the largest range for all perceptual attributes: fabric, plastic, ceramic,
    and metal. Using a cumulative link mixed model (CLMM) for robust regression, we
    discover interactions between these material categories and four representative
    illuminations and object geometries. We believe that our findings contribute to
    expanding the knowledge on material appearance perception and can be useful for
    many applications, such as scene design, where any particular material in a given
    shape can be aligned with dominant classes of illumination, so that a desired
    strength of appearance attributes can be achieved.'
acknowledgement: This project has received funding from the European Union’s Horizon
  2020 research and innovation programme under the Marie Sklodowska-Curie, grant agreement
  N∘ 765911 (RealVision) and from the European Research Council (ERC), grant agreement
  N∘ 804226 (PERDY). Open Access funding enabled and organized by Projekt DEAL.
article_processing_charge: Yes
article_type: original
author:
- first_name: Bin
  full_name: Chen, Bin
  last_name: Chen
- first_name: Chao
  full_name: Wang, Chao
  last_name: Wang
- first_name: Michael
  full_name: Piovarci, Michael
  id: 62E473F4-5C99-11EA-A40E-AF823DDC885E
  last_name: Piovarci
  orcid: 0000-0002-5062-4474
- first_name: Hans Peter
  full_name: Seidel, Hans Peter
  last_name: Seidel
- first_name: Piotr
  full_name: Didyk, Piotr
  last_name: Didyk
- first_name: Karol
  full_name: Myszkowski, Karol
  last_name: Myszkowski
- first_name: Ana
  full_name: Serrano, Ana
  last_name: Serrano
citation:
  ama: Chen B, Wang C, Piovarci M, et al. The effect of geometry and illumination
    on appearance perception of different material categories. <i>Visual Computer</i>.
    2021;37(12):2975-2987. doi:<a href="https://doi.org/10.1007/s00371-021-02227-x">10.1007/s00371-021-02227-x</a>
  apa: Chen, B., Wang, C., Piovarci, M., Seidel, H. P., Didyk, P., Myszkowski, K.,
    &#38; Serrano, A. (2021). The effect of geometry and illumination on appearance
    perception of different material categories. <i>Visual Computer</i>. Springer
    Nature. <a href="https://doi.org/10.1007/s00371-021-02227-x">https://doi.org/10.1007/s00371-021-02227-x</a>
  chicago: Chen, Bin, Chao Wang, Michael Piovarci, Hans Peter Seidel, Piotr Didyk,
    Karol Myszkowski, and Ana Serrano. “The Effect of Geometry and Illumination on
    Appearance Perception of Different Material Categories.” <i>Visual Computer</i>.
    Springer Nature, 2021. <a href="https://doi.org/10.1007/s00371-021-02227-x">https://doi.org/10.1007/s00371-021-02227-x</a>.
  ieee: B. Chen <i>et al.</i>, “The effect of geometry and illumination on appearance
    perception of different material categories,” <i>Visual Computer</i>, vol. 37,
    no. 12. Springer Nature, pp. 2975–2987, 2021.
  ista: Chen B, Wang C, Piovarci M, Seidel HP, Didyk P, Myszkowski K, Serrano A. 2021.
    The effect of geometry and illumination on appearance perception of different
    material categories. Visual Computer. 37(12), 2975–2987.
  mla: Chen, Bin, et al. “The Effect of Geometry and Illumination on Appearance Perception
    of Different Material Categories.” <i>Visual Computer</i>, vol. 37, no. 12, Springer
    Nature, 2021, pp. 2975–87, doi:<a href="https://doi.org/10.1007/s00371-021-02227-x">10.1007/s00371-021-02227-x</a>.
  short: B. Chen, C. Wang, M. Piovarci, H.P. Seidel, P. Didyk, K. Myszkowski, A. Serrano,
    Visual Computer 37 (2021) 2975–2987.
date_created: 2021-12-26T23:01:26Z
date_published: 2021-12-01T00:00:00Z
date_updated: 2023-08-17T06:29:34Z
day: '01'
ddc:
- '000'
department:
- _id: BeBi
doi: 10.1007/s00371-021-02227-x
external_id:
  isi:
  - '000673536600003'
file:
- access_level: open_access
  checksum: 244cfcac0479ca6e3444c098ab2860a1
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-12-27T13:51:08Z
  date_updated: 2021-12-27T13:51:08Z
  file_id: '10578'
  file_name: 2021_VisComput_Chen.pdf
  file_size: 5741094
  relation: main_file
  success: 1
file_date_updated: 2021-12-27T13:51:08Z
has_accepted_license: '1'
intvolume: '        37'
isi: 1
issue: '12'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 2975-2987
publication: Visual Computer
publication_identifier:
  eissn:
  - 1432-2315
  issn:
  - 0178-2789
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: The effect of geometry and illumination on appearance perception of different
  material categories
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 37
year: '2021'
...
---
_id: '10575'
abstract:
- lang: eng
  text: The choice of the boundary conditions in mechanical problems has to reflect
    the interaction of the considered material with the surface. Still the assumption
    of the no-slip condition is preferred in order to avoid boundary terms in the
    analysis and slipping effects are usually overlooked. Besides the “static slip
    models”, there are phenomena that are not accurately described by them, e.g. at
    the moment when the slip changes rapidly, the wall shear stress and the slip can
    exhibit a sudden overshoot and subsequent relaxation. When these effects become
    significant, the so-called dynamic slip phenomenon occurs. We develop a mathematical
    analysis of Navier–Stokes-like problems with a dynamic slip boundary condition,
    which requires a proper generalization of the Gelfand triplet and the corresponding
    function space setting.
acknowledgement: The research of A. Abbatiello is supported by Einstein Foundation,
  Berlin. A. Abbatiello is also member of the Italian National Group for the Mathematical
  Physics (GNFM) of INdAM. M. Bulíček acknowledges the support of the project No.
  20-11027X financed by Czech Science Foundation (GACR). M. Bulíček is member of the
  Jindřich Nečas Center for Mathematical Modelling. E. Maringová acknowledges support
  from Charles University Research program UNCE/SCI/023, the grant SVV-2020-260583
  by the Ministry of Education, Youth and Sports, Czech Republic and from the Austrian
  Science Fund (FWF), grants P30000, W1245, and F65.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Anna
  full_name: Abbatiello, Anna
  last_name: Abbatiello
- first_name: Miroslav
  full_name: Bulíček, Miroslav
  last_name: Bulíček
- first_name: Erika
  full_name: Maringová, Erika
  id: dbabca31-66eb-11eb-963a-fb9c22c880b4
  last_name: Maringová
citation:
  ama: Abbatiello A, Bulíček M, Maringová E. On the dynamic slip boundary condition
    for Navier-Stokes-like problems. <i>Mathematical Models and Methods in Applied
    Sciences</i>. 2021;31(11):2165-2212. doi:<a href="https://doi.org/10.1142/S0218202521500470">10.1142/S0218202521500470</a>
  apa: Abbatiello, A., Bulíček, M., &#38; Maringová, E. (2021). On the dynamic slip
    boundary condition for Navier-Stokes-like problems. <i>Mathematical Models and
    Methods in Applied Sciences</i>. World Scientific Publishing. <a href="https://doi.org/10.1142/S0218202521500470">https://doi.org/10.1142/S0218202521500470</a>
  chicago: Abbatiello, Anna, Miroslav Bulíček, and Erika Maringová. “On the Dynamic
    Slip Boundary Condition for Navier-Stokes-like Problems.” <i>Mathematical Models
    and Methods in Applied Sciences</i>. World Scientific Publishing, 2021. <a href="https://doi.org/10.1142/S0218202521500470">https://doi.org/10.1142/S0218202521500470</a>.
  ieee: A. Abbatiello, M. Bulíček, and E. Maringová, “On the dynamic slip boundary
    condition for Navier-Stokes-like problems,” <i>Mathematical Models and Methods
    in Applied Sciences</i>, vol. 31, no. 11. World Scientific Publishing, pp. 2165–2212,
    2021.
  ista: Abbatiello A, Bulíček M, Maringová E. 2021. On the dynamic slip boundary condition
    for Navier-Stokes-like problems. Mathematical Models and Methods in Applied Sciences.
    31(11), 2165–2212.
  mla: Abbatiello, Anna, et al. “On the Dynamic Slip Boundary Condition for Navier-Stokes-like
    Problems.” <i>Mathematical Models and Methods in Applied Sciences</i>, vol. 31,
    no. 11, World Scientific Publishing, 2021, pp. 2165–212, doi:<a href="https://doi.org/10.1142/S0218202521500470">10.1142/S0218202521500470</a>.
  short: A. Abbatiello, M. Bulíček, E. Maringová, Mathematical Models and Methods
    in Applied Sciences 31 (2021) 2165–2212.
date_created: 2021-12-26T23:01:27Z
date_published: 2021-10-13T00:00:00Z
date_updated: 2023-08-17T06:29:01Z
day: '13'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1142/S0218202521500470
external_id:
  arxiv:
  - '2009.09057'
  isi:
  - '000722309400001'
file:
- access_level: open_access
  checksum: 8c0a9396335f0b70e1f5cbfe450a987a
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-16T10:55:45Z
  date_updated: 2022-05-16T10:55:45Z
  file_id: '11385'
  file_name: 2021_MathModelsMethods_Abbatiello.pdf
  file_size: 795483
  relation: main_file
  success: 1
file_date_updated: 2022-05-16T10:55:45Z
has_accepted_license: '1'
intvolume: '        31'
isi: 1
issue: '11'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 2165-2212
project:
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
  grant_number: F6504
  name: Taming Complexity in Partial Differential Systems
- _id: 260788DE-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  name: Dissipation and Dispersion in Nonlinear Partial Differential Equations
publication: Mathematical Models and Methods in Applied Sciences
publication_identifier:
  eissn:
  - 1793-6314
  issn:
  - 0218-2025
publication_status: published
publisher: World Scientific Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the dynamic slip boundary condition for Navier-Stokes-like problems
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 31
year: '2021'
...
---
_id: '10579'
abstract:
- lang: eng
  text: 'We consider a totally asymmetric simple exclusion process (TASEP) consisting
    of particles on a lattice that require binding by a "token" to move. Using a combination
    of theory and simulations, we address the following questions: (i) How token binding
    kinetics affects the current-density relation; (ii) How the current-density relation
    depends on the scarcity of tokens; (iii) How tokens propagate the effects of the
    locally-imposed disorder (such a slow site) over the entire lattice; (iv) How
    a shared pool of tokens couples concurrent TASEPs running on multiple lattices;
    (v) How our results translate to TASEPs with open boundaries that exchange particles
    with the reservoir. Since real particle motion (including in systems that inspired
    the standard TASEP model, e.g., protein synthesis or movement of molecular motors)
    is often catalyzed, regulated, actuated, or otherwise mediated, the token-driven
    TASEP dynamics analyzed in this paper should allow for a better understanding
    of real systems and enable a closer match between TASEP theory and experimental
    observations.'
acknowledgement: B.K. thanks Stefano Elefante, Simon Rella, and Michal Hledík for
  their help with the usage of the cluster. B.K. additionally thanks Călin Guet and
  his group for help and advice. We thank M. Hennessey-Wesen for constructive comments
  on the manuscript. We thank Ankita Gupta (Indian Institute of Technology) for spotting
  a typographical error in Eq. (49) in the preprint version of this paper.
article_number: '2112.13558'
article_processing_charge: No
arxiv: 1
author:
- first_name: Bor
  full_name: Kavcic, Bor
  id: 350F91D2-F248-11E8-B48F-1D18A9856A87
  last_name: Kavcic
  orcid: 0000-0001-6041-254X
- first_name: Gašper
  full_name: Tkačik, Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
citation:
  ama: Kavcic B, Tkačik G. Token-driven totally asymmetric simple exclusion process.
    <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2112.13558">10.48550/arXiv.2112.13558</a>
  apa: Kavcic, B., &#38; Tkačik, G. (n.d.). Token-driven totally asymmetric simple
    exclusion process. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2112.13558">https://doi.org/10.48550/arXiv.2112.13558</a>
  chicago: Kavcic, Bor, and Gašper Tkačik. “Token-Driven Totally Asymmetric Simple
    Exclusion Process.” <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2112.13558">https://doi.org/10.48550/arXiv.2112.13558</a>.
  ieee: B. Kavcic and G. Tkačik, “Token-driven totally asymmetric simple exclusion
    process,” <i>arXiv</i>. .
  ista: Kavcic B, Tkačik G. Token-driven totally asymmetric simple exclusion process.
    arXiv, 2112.13558.
  mla: Kavcic, Bor, and Gašper Tkačik. “Token-Driven Totally Asymmetric Simple Exclusion
    Process.” <i>ArXiv</i>, 2112.13558, doi:<a href="https://doi.org/10.48550/arXiv.2112.13558">10.48550/arXiv.2112.13558</a>.
  short: B. Kavcic, G. Tkačik, ArXiv (n.d.).
date_created: 2021-12-28T06:52:09Z
date_published: 2021-12-27T00:00:00Z
date_updated: 2023-05-03T10:54:05Z
day: '27'
ddc:
- '530'
department:
- _id: GaTk
doi: 10.48550/arXiv.2112.13558
external_id:
  arxiv:
  - '2112.13558'
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2112.13558
month: '12'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
status: public
title: Token-driven totally asymmetric simple exclusion process
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '10585'
abstract:
- lang: eng
  text: Recently it was shown that anyons on the two-sphere naturally arise from a
    system of molecular impurities exchanging angular momentum with a many-particle
    bath (Phys. Rev. Lett. 126, 015301 (2021)). Here we further advance this approach
    and rigorously demonstrate that in the experimentally realized regime the lowest
    spectrum of two linear molecules immersed in superfluid helium corresponds to
    the spectrum of two anyons on the sphere. We develop the formalism within the
    framework of the recently experimentally observed angulon quasiparticle
acknowledgement: D. Lundholm acknowledges financial support from the Göran Gustafsson
  Foundation (grant no. 1804).
article_number: '106'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Morris
  full_name: Brooks, Morris
  id: B7ECF9FC-AA38-11E9-AC9A-0930E6697425
  last_name: Brooks
  orcid: 0000-0002-6249-0928
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Douglas
  full_name: Lundholm, Douglas
  last_name: Lundholm
- first_name: Enderalp
  full_name: Yakaboylu, Enderalp
  id: 38CB71F6-F248-11E8-B48F-1D18A9856A87
  last_name: Yakaboylu
  orcid: 0000-0001-5973-0874
citation:
  ama: Brooks M, Lemeshko M, Lundholm D, Yakaboylu E. Emergence of anyons on the two-sphere
    in molecular impurities. <i>Atoms</i>. 2021;9(4). doi:<a href="https://doi.org/10.3390/atoms9040106">10.3390/atoms9040106</a>
  apa: Brooks, M., Lemeshko, M., Lundholm, D., &#38; Yakaboylu, E. (2021). Emergence
    of anyons on the two-sphere in molecular impurities. <i>Atoms</i>. MDPI. <a href="https://doi.org/10.3390/atoms9040106">https://doi.org/10.3390/atoms9040106</a>
  chicago: Brooks, Morris, Mikhail Lemeshko, Douglas Lundholm, and Enderalp Yakaboylu.
    “Emergence of Anyons on the Two-Sphere in Molecular Impurities.” <i>Atoms</i>.
    MDPI, 2021. <a href="https://doi.org/10.3390/atoms9040106">https://doi.org/10.3390/atoms9040106</a>.
  ieee: M. Brooks, M. Lemeshko, D. Lundholm, and E. Yakaboylu, “Emergence of anyons
    on the two-sphere in molecular impurities,” <i>Atoms</i>, vol. 9, no. 4. MDPI,
    2021.
  ista: Brooks M, Lemeshko M, Lundholm D, Yakaboylu E. 2021. Emergence of anyons on
    the two-sphere in molecular impurities. Atoms. 9(4), 106.
  mla: Brooks, Morris, et al. “Emergence of Anyons on the Two-Sphere in Molecular
    Impurities.” <i>Atoms</i>, vol. 9, no. 4, 106, MDPI, 2021, doi:<a href="https://doi.org/10.3390/atoms9040106">10.3390/atoms9040106</a>.
  short: M. Brooks, M. Lemeshko, D. Lundholm, E. Yakaboylu, Atoms 9 (2021).
date_created: 2022-01-02T23:01:33Z
date_published: 2021-12-02T00:00:00Z
date_updated: 2023-06-15T14:51:49Z
day: '02'
ddc:
- '530'
department:
- _id: MiLe
- _id: RoSe
doi: 10.3390/atoms9040106
external_id:
  arxiv:
  - '2108.06966'
file:
- access_level: open_access
  checksum: d0e44b95f36c9e06724f66832af0f8c3
  content_type: application/pdf
  creator: alisjak
  date_created: 2022-01-03T10:15:05Z
  date_updated: 2022-01-03T10:15:05Z
  file_id: '10592'
  file_name: 2021_Atoms_Brooks.pdf
  file_size: 303070
  relation: main_file
  success: 1
file_date_updated: 2022-01-03T10:15:05Z
has_accepted_license: '1'
intvolume: '         9'
issue: '4'
keyword:
- anyons
- quasiparticles
- Quantum Hall Effect
- topological states of matter
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: Atoms
publication_identifier:
  eissn:
  - 2218-2004
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Emergence of anyons on the two-sphere in molecular impurities
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2021'
...
---
_id: '10586'
abstract:
- lang: eng
  text: A facile approach for developing an interfacial solar evaporator by heat localization
    of solar-thermal energy conversion at water-air liquid composed by in-situ polymerization
    of Fe2O3 nanoparticles (Fe2O3@PPy) deposited over a facial sponge is proposed.
    The demonstrated system consists of a floating solar receiver having a vertically
    cross-linked microchannel for wicking up saline water. The in situ polymerized
    Fe2O3@PPy interfacial layer promotes diffuse reflection and its rough black surface
    allows Omni-directional solar absorption (94%) and facilitates efficient thermal
    localization at the water/air interface and offers a defect-rich surface to promote
    heat localization (41.9 °C) and excellent thermal management due to cellulosic
    content. The self-floating composite foam reveals continuous vapors generation
    at a rate of 1.52 kg m−2 h−1 under one 1 kW m−2 and profound evaporating efficiency
    (95%) without heat losses that dissipates in its surroundings. Indeed, long-term
    evaporation experiments reveal the negligible disparity in continuous evaporation
    rate (33.84 kg m−2/8.3 h) receiving two sun solar intensity, and ensures the stability
    of the device under intense seawater conditions synchronized with excellent salt
    rejection potential. More importantly, Raman spectroscopy investigation validates
    the orange dye rejection via Fe2O3@PPy solar evaporator. The combined advantages
    of high efficiency, self-floating capability, multimedia rejection, low cost,
    and this configuration are promising for producing large-scale solar steam generating
    systems appropriate for commercial clean water yield due to their scalable fabrication.
acknowledgement: The authors extend their appreciation to King Saud University for
  funding this work through Researchers Supporting Project number (RSP-2021/387),
  King Saud University, Riyadh, Saudi Arabia.
alternative_title:
- Hybrid and Composite Crystalline Materials
article_number: '1509'
article_processing_charge: No
article_type: original
author:
- first_name: Yuzheng
  full_name: Lu, Yuzheng
  last_name: Lu
- first_name: Naila
  full_name: Arshad, Naila
  last_name: Arshad
- first_name: Muhammad Sultan
  full_name: Irshad, Muhammad Sultan
  last_name: Irshad
- first_name: Iftikhar
  full_name: Ahmed, Iftikhar
  last_name: Ahmed
- first_name: Shafiq
  full_name: Ahmad, Shafiq
  last_name: Ahmad
- first_name: Lina Abdullah
  full_name: Alshahrani, Lina Abdullah
  last_name: Alshahrani
- first_name: Muhammad
  full_name: Yousaf, Muhammad
  last_name: Yousaf
- first_name: Abdelaty Edrees
  full_name: Sayed, Abdelaty Edrees
  last_name: Sayed
- first_name: Muhammad
  full_name: Nauman, Muhammad
  id: 32c21954-2022-11eb-9d5f-af9f93c24e71
  last_name: Nauman
  orcid: 0000-0002-2111-4846
citation:
  ama: Lu Y, Arshad N, Irshad MS, et al. Fe2O3 nanoparticles deposited over self-floating
    facial sponge for facile interfacial seawater solar desalination. <i>Crystals</i>.
    2021;11(12). doi:<a href="https://doi.org/10.3390/cryst11121509">10.3390/cryst11121509</a>
  apa: Lu, Y., Arshad, N., Irshad, M. S., Ahmed, I., Ahmad, S., Alshahrani, L. A.,
    … Nauman, M. (2021). Fe2O3 nanoparticles deposited over self-floating facial sponge
    for facile interfacial seawater solar desalination. <i>Crystals</i>. MDPI. <a
    href="https://doi.org/10.3390/cryst11121509">https://doi.org/10.3390/cryst11121509</a>
  chicago: Lu, Yuzheng, Naila Arshad, Muhammad Sultan Irshad, Iftikhar Ahmed, Shafiq
    Ahmad, Lina Abdullah Alshahrani, Muhammad Yousaf, Abdelaty Edrees Sayed, and Muhammad
    Nauman. “Fe2O3 Nanoparticles Deposited over Self-Floating Facial Sponge for Facile
    Interfacial Seawater Solar Desalination.” <i>Crystals</i>. MDPI, 2021. <a href="https://doi.org/10.3390/cryst11121509">https://doi.org/10.3390/cryst11121509</a>.
  ieee: Y. Lu <i>et al.</i>, “Fe2O3 nanoparticles deposited over self-floating facial
    sponge for facile interfacial seawater solar desalination,” <i>Crystals</i>, vol.
    11, no. 12. MDPI, 2021.
  ista: Lu Y, Arshad N, Irshad MS, Ahmed I, Ahmad S, Alshahrani LA, Yousaf M, Sayed
    AE, Nauman M. 2021. Fe2O3 nanoparticles deposited over self-floating facial sponge
    for facile interfacial seawater solar desalination. Crystals. 11(12), 1509.
  mla: Lu, Yuzheng, et al. “Fe2O3 Nanoparticles Deposited over Self-Floating Facial
    Sponge for Facile Interfacial Seawater Solar Desalination.” <i>Crystals</i>, vol.
    11, no. 12, 1509, MDPI, 2021, doi:<a href="https://doi.org/10.3390/cryst11121509">10.3390/cryst11121509</a>.
  short: Y. Lu, N. Arshad, M.S. Irshad, I. Ahmed, S. Ahmad, L.A. Alshahrani, M. Yousaf,
    A.E. Sayed, M. Nauman, Crystals 11 (2021).
date_created: 2022-01-02T23:01:34Z
date_published: 2021-12-03T00:00:00Z
date_updated: 2023-08-17T06:31:20Z
day: '03'
ddc:
- '620'
department:
- _id: KiMo
doi: 10.3390/cryst11121509
external_id:
  isi:
  - '000736602200001'
file:
- access_level: open_access
  checksum: 668e9d777608ce0a3bc2e305133bd06b
  content_type: application/pdf
  creator: alisjak
  date_created: 2022-01-03T09:46:53Z
  date_updated: 2022-01-03T09:46:53Z
  file_id: '10591'
  file_name: 2021_Crystals_Yuzheng.pdf
  file_size: 4569639
  relation: main_file
  success: 1
file_date_updated: 2022-01-03T09:46:53Z
has_accepted_license: '1'
intvolume: '        11'
isi: 1
issue: '12'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: Crystals
publication_identifier:
  eissn:
  - 2073-4352
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fe2O3 nanoparticles deposited over self-floating facial sponge for facile interfacial
  seawater solar desalination
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2021'
...
---
_id: '10593'
abstract:
- lang: eng
  text: 'We study the problem of estimating a rank-$1$ signal in the presence of rotationally
    invariant noise-a class of perturbations more general than Gaussian noise. Principal
    Component Analysis (PCA) provides a natural estimator, and sharp results on its
    performance have been obtained in the high-dimensional regime. Recently, an Approximate
    Message Passing (AMP) algorithm has been proposed as an alternative estimator
    with the potential to improve the accuracy of PCA. However, the existing analysis
    of AMP requires an initialization that is both correlated with the signal and
    independent of the noise, which is often unrealistic in practice. In this work,
    we combine the two methods, and propose to initialize AMP with PCA. Our main result
    is a rigorous asymptotic characterization of the performance of this estimator.
    Both the AMP algorithm and its analysis differ from those previously derived in
    the Gaussian setting: at every iteration, our AMP algorithm requires a specific
    term to account for PCA initialization, while in the Gaussian case, PCA initialization
    affects only the first iteration of AMP. The proof is based on a two-phase artificial
    AMP that first approximates the PCA estimator and then mimics the true AMP. Our
    numerical simulations show an excellent agreement between AMP results and theoretical
    predictions, and suggest an interesting open direction on achieving Bayes-optimal
    performance.'
acknowledgement: "M. Mondelli would like to thank László Erdős for helpful discussions.
  M. Mondelli was partially supported by the 2019 Lopez-Loreta Prize. R. Venkataramanan
  was partially supported by the Alan Turing Institute under the EPSRC grant EP/N510129/1.\r\n"
article_processing_charge: No
arxiv: 1
author:
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: Ramji
  full_name: Venkataramanan, Ramji
  last_name: Venkataramanan
citation:
  ama: 'Mondelli M, Venkataramanan R. PCA initialization for approximate message passing
    in rotationally invariant models. In: <i>35th Conference on Neural Information
    Processing Systems</i>. Vol 35. Neural Information Processing Systems Foundation;
    2021:29616-29629.'
  apa: 'Mondelli, M., &#38; Venkataramanan, R. (2021). PCA initialization for approximate
    message passing in rotationally invariant models. In <i>35th Conference on Neural
    Information Processing Systems</i> (Vol. 35, pp. 29616–29629). Virtual: Neural
    Information Processing Systems Foundation.'
  chicago: Mondelli, Marco, and Ramji Venkataramanan. “PCA Initialization for Approximate
    Message Passing in Rotationally Invariant Models.” In <i>35th Conference on Neural
    Information Processing Systems</i>, 35:29616–29. Neural Information Processing
    Systems Foundation, 2021.
  ieee: M. Mondelli and R. Venkataramanan, “PCA initialization for approximate message
    passing in rotationally invariant models,” in <i>35th Conference on Neural Information
    Processing Systems</i>, Virtual, 2021, vol. 35, pp. 29616–29629.
  ista: 'Mondelli M, Venkataramanan R. 2021. PCA initialization for approximate message
    passing in rotationally invariant models. 35th Conference on Neural Information
    Processing Systems. NeurIPS: Neural Information Processing Systems vol. 35, 29616–29629.'
  mla: Mondelli, Marco, and Ramji Venkataramanan. “PCA Initialization for Approximate
    Message Passing in Rotationally Invariant Models.” <i>35th Conference on Neural
    Information Processing Systems</i>, vol. 35, Neural Information Processing Systems
    Foundation, 2021, pp. 29616–29.
  short: M. Mondelli, R. Venkataramanan, in:, 35th Conference on Neural Information
    Processing Systems, Neural Information Processing Systems Foundation, 2021, pp.
    29616–29629.
conference:
  end_date: 2021-12-14
  location: Virtual
  name: 'NeurIPS: Neural Information Processing Systems'
  start_date: 2021-12-06
date_created: 2022-01-03T10:50:02Z
date_published: 2021-12-01T00:00:00Z
date_updated: 2024-09-10T13:03:19Z
day: '01'
department:
- _id: MaMo
external_id:
  arxiv:
  - '2106.02356'
intvolume: '        35'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2106.02356
month: '12'
oa: 1
oa_version: Preprint
page: 29616-29629
project:
- _id: 059876FA-7A3F-11EA-A408-12923DDC885E
  name: Prix Lopez-Loretta 2019 - Marco Mondelli
publication: 35th Conference on Neural Information Processing Systems
publication_identifier:
  isbn:
  - '9781713845393'
  issn:
  - 1049-5258
publication_status: published
publisher: Neural Information Processing Systems Foundation
quality_controlled: '1'
scopus_import: '1'
status: public
title: PCA initialization for approximate message passing in rotationally invariant
  models
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 35
year: '2021'
...
---
_id: '10594'
abstract:
- lang: eng
  text: 'The question of how and why the phenomenon of mode connectivity occurs in
    training deep neural networks has gained remarkable attention in the research
    community. From a theoretical perspective, two possible explanations have been
    proposed: (i) the loss function has connected sublevel sets, and (ii) the solutions
    found by stochastic gradient descent are dropout stable. While these explanations
    provide insights into the phenomenon, their assumptions are not always satisfied
    in practice. In particular, the first approach requires the network to have one
    layer with order of N neurons (N being the number of training samples), while
    the second one requires the loss to be almost invariant after removing half of
    the neurons at each layer (up to some rescaling of the remaining ones). In this
    work, we improve both conditions by exploiting the quality of the features at
    every intermediate layer together with a milder over-parameterization condition.
    More specifically, we show that: (i) under generic assumptions on the features
    of intermediate layers, it suffices that the last two hidden layers have order
    of N−−√ neurons, and (ii) if subsets of features at each layer are linearly separable,
    then no over-parameterization is needed to show the connectivity. Our experiments
    confirm that the proposed condition ensures the connectivity of solutions found
    by stochastic gradient descent, even in settings where the previous requirements
    do not hold.'
acknowledgement: MM was partially supported by the 2019 Lopez-Loreta Prize. QN and
  PB acknowledge support from the European Research Council (ERC) under the European
  Union’s Horizon 2020 research and innovation programme (grant agreement no 757983).
article_processing_charge: No
arxiv: 1
author:
- first_name: Quynh
  full_name: Nguyen, Quynh
  last_name: Nguyen
- first_name: Pierre
  full_name: Bréchet, Pierre
  last_name: Bréchet
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
citation:
  ama: 'Nguyen Q, Bréchet P, Mondelli M. When are solutions connected in deep networks?
    In: <i>35th Conference on Neural Information Processing Systems</i>. Vol 35. Neural
    Information Processing Systems Foundation; 2021.'
  apa: 'Nguyen, Q., Bréchet, P., &#38; Mondelli, M. (2021). When are solutions connected
    in deep networks? In <i>35th Conference on Neural Information Processing Systems</i>
    (Vol. 35). Virtual: Neural Information Processing Systems Foundation.'
  chicago: Nguyen, Quynh, Pierre Bréchet, and Marco Mondelli. “When Are Solutions
    Connected in Deep Networks?” In <i>35th Conference on Neural Information Processing
    Systems</i>, Vol. 35. Neural Information Processing Systems Foundation, 2021.
  ieee: Q. Nguyen, P. Bréchet, and M. Mondelli, “When are solutions connected in deep
    networks?,” in <i>35th Conference on Neural Information Processing Systems</i>,
    Virtual, 2021, vol. 35.
  ista: Nguyen Q, Bréchet P, Mondelli M. 2021. When are solutions connected in deep
    networks? 35th Conference on Neural Information Processing Systems. 35th Conference
    on Neural Information Processing Systems vol. 35.
  mla: Nguyen, Quynh, et al. “When Are Solutions Connected in Deep Networks?” <i>35th
    Conference on Neural Information Processing Systems</i>, vol. 35, Neural Information
    Processing Systems Foundation, 2021.
  short: Q. Nguyen, P. Bréchet, M. Mondelli, in:, 35th Conference on Neural Information
    Processing Systems, Neural Information Processing Systems Foundation, 2021.
conference:
  end_date: 2021-12-14
  location: Virtual
  name: 35th Conference on Neural Information Processing Systems
  start_date: 2021-12-06
date_created: 2022-01-03T10:56:20Z
date_published: 2021-12-01T00:00:00Z
date_updated: 2024-09-10T13:03:19Z
day: '01'
department:
- _id: MaMo
external_id:
  arxiv:
  - '2102.09671'
intvolume: '        35'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2102.09671
month: '12'
oa: 1
oa_version: Preprint
project:
- _id: 059876FA-7A3F-11EA-A408-12923DDC885E
  name: Prix Lopez-Loretta 2019 - Marco Mondelli
publication: 35th Conference on Neural Information Processing Systems
publication_identifier:
  isbn:
  - '9781713845393'
  issn:
  - 1049-5258
publication_status: published
publisher: Neural Information Processing Systems Foundation
quality_controlled: '1'
status: public
title: When are solutions connected in deep networks?
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 35
year: '2021'
...
---
_id: '10595'
abstract:
- lang: eng
  text: 'A recent line of work has analyzed the theoretical properties of deep neural
    networks via the Neural Tangent Kernel (NTK). In particular, the smallest eigenvalue
    of the NTK has been related to the memorization capacity, the global convergence
    of gradient descent algorithms and the generalization of deep nets. However, existing
    results either provide bounds in the two-layer setting or assume that the spectrum
    of the NTK matrices is bounded away from 0 for multi-layer networks. In this paper,
    we provide tight bounds on the smallest eigenvalue of NTK matrices for deep ReLU
    nets, both in the limiting case of infinite widths and for finite widths. In the
    finite-width setting, the network architectures we consider are fairly general:
    we require the existence of a wide layer with roughly order of $N$ neurons, $N$
    being the number of data samples; and the scaling of the remaining layer widths
    is arbitrary (up to logarithmic factors). To obtain our results, we analyze various
    quantities of independent interest: we give lower bounds on the smallest singular
    value of hidden feature matrices, and upper bounds on the Lipschitz constant of
    input-output feature maps.'
acknowledgement: "The authors would like to thank the anonymous reviewers for their
  helpful comments. MM was partially supported\r\nby the 2019 Lopez-Loreta Prize.
  QN and GM acknowledge support from the European Research Council (ERC) under\r\nthe
  European Union’s Horizon 2020 research and innovation programme (grant agreement
  no 757983)."
alternative_title:
- Proceedings of Machine Learning Research
article_processing_charge: No
arxiv: 1
author:
- first_name: Quynh
  full_name: Nguyen, Quynh
  last_name: Nguyen
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: Guido F
  full_name: Montufar, Guido F
  last_name: Montufar
citation:
  ama: 'Nguyen Q, Mondelli M, Montufar GF. Tight bounds on the smallest eigenvalue
    of the neural tangent kernel for deep ReLU networks. In: Meila M, Zhang T, eds.
    <i>Proceedings of the 38th International Conference on Machine Learning</i>. Vol
    139. ML Research Press; 2021:8119-8129.'
  apa: 'Nguyen, Q., Mondelli, M., &#38; Montufar, G. F. (2021). Tight bounds on the
    smallest eigenvalue of the neural tangent kernel for deep ReLU networks. In M.
    Meila &#38; T. Zhang (Eds.), <i>Proceedings of the 38th International Conference
    on Machine Learning</i> (Vol. 139, pp. 8119–8129). Virtual: ML Research Press.'
  chicago: Nguyen, Quynh, Marco Mondelli, and Guido F Montufar. “Tight Bounds on the
    Smallest Eigenvalue of the Neural Tangent Kernel for Deep ReLU Networks.” In <i>Proceedings
    of the 38th International Conference on Machine Learning</i>, edited by Marina
    Meila and Tong Zhang, 139:8119–29. ML Research Press, 2021.
  ieee: Q. Nguyen, M. Mondelli, and G. F. Montufar, “Tight bounds on the smallest
    eigenvalue of the neural tangent kernel for deep ReLU networks,” in <i>Proceedings
    of the 38th International Conference on Machine Learning</i>, Virtual, 2021, vol.
    139, pp. 8119–8129.
  ista: 'Nguyen Q, Mondelli M, Montufar GF. 2021. Tight bounds on the smallest eigenvalue
    of the neural tangent kernel for deep ReLU networks. Proceedings of the 38th International
    Conference on Machine Learning. ICML: International Conference on Machine Learning,
    Proceedings of Machine Learning Research, vol. 139, 8119–8129.'
  mla: Nguyen, Quynh, et al. “Tight Bounds on the Smallest Eigenvalue of the Neural
    Tangent Kernel for Deep ReLU Networks.” <i>Proceedings of the 38th International
    Conference on Machine Learning</i>, edited by Marina Meila and Tong Zhang, vol.
    139, ML Research Press, 2021, pp. 8119–29.
  short: Q. Nguyen, M. Mondelli, G.F. Montufar, in:, M. Meila, T. Zhang (Eds.), Proceedings
    of the 38th International Conference on Machine Learning, ML Research Press, 2021,
    pp. 8119–8129.
conference:
  end_date: 2021-07-24
  location: Virtual
  name: 'ICML: International Conference on Machine Learning'
  start_date: 2021-07-18
date_created: 2022-01-03T10:57:49Z
date_published: 2021-01-01T00:00:00Z
date_updated: 2024-09-10T13:03:17Z
department:
- _id: MaMo
editor:
- first_name: Marina
  full_name: Meila, Marina
  last_name: Meila
- first_name: Tong
  full_name: Zhang, Tong
  last_name: Zhang
external_id:
  arxiv:
  - '2012.11654'
intvolume: '       139'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://proceedings.mlr.press/v139/nguyen21g.html
oa: 1
oa_version: Published Version
page: 8119-8129
project:
- _id: 059876FA-7A3F-11EA-A408-12923DDC885E
  name: Prix Lopez-Loretta 2019 - Marco Mondelli
publication: Proceedings of the 38th International Conference on Machine Learning
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
status: public
title: Tight bounds on the smallest eigenvalue of the neural tangent kernel for deep
  ReLU networks
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 139
year: '2021'
...
---
_id: '10597'
abstract:
- lang: eng
  text: We thank Emmanuel Abbe and Min Ye for providing us the implementation of RPA
    decoding. D. Fathollahi and M. Mondelli are partially supported by the 2019 Lopez-Loreta
    Prize. N. Farsad is supported by Discovery Grant from the Natural Sciences and
    Engineering Research Council of Canada (NSERC) and Canada Foundation for Innovation
    (CFI), John R. Evans Leader Fund. S. A. Hashemi is supported by a Postdoctoral
    Fellowship from NSERC.
article_processing_charge: No
arxiv: 1
author:
- first_name: Dorsa
  full_name: Fathollahi, Dorsa
  last_name: Fathollahi
- first_name: Nariman
  full_name: Farsad, Nariman
  last_name: Farsad
- first_name: Seyyed Ali
  full_name: Hashemi, Seyyed Ali
  last_name: Hashemi
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
citation:
  ama: 'Fathollahi D, Farsad N, Hashemi SA, Mondelli M. Sparse multi-decoder recursive
    projection aggregation for Reed-Muller codes. In: <i>2021 IEEE International Symposium
    on Information Theory</i>. Institute of Electrical and Electronics Engineers;
    2021:1082-1087. doi:<a href="https://doi.org/10.1109/isit45174.2021.9517887">10.1109/isit45174.2021.9517887</a>'
  apa: 'Fathollahi, D., Farsad, N., Hashemi, S. A., &#38; Mondelli, M. (2021). Sparse
    multi-decoder recursive projection aggregation for Reed-Muller codes. In <i>2021
    IEEE International Symposium on Information Theory</i> (pp. 1082–1087). Virtual,
    Melbourne, Australia: Institute of Electrical and Electronics Engineers. <a href="https://doi.org/10.1109/isit45174.2021.9517887">https://doi.org/10.1109/isit45174.2021.9517887</a>'
  chicago: Fathollahi, Dorsa, Nariman Farsad, Seyyed Ali Hashemi, and Marco Mondelli.
    “Sparse Multi-Decoder Recursive Projection Aggregation for Reed-Muller Codes.”
    In <i>2021 IEEE International Symposium on Information Theory</i>, 1082–87. Institute
    of Electrical and Electronics Engineers, 2021. <a href="https://doi.org/10.1109/isit45174.2021.9517887">https://doi.org/10.1109/isit45174.2021.9517887</a>.
  ieee: D. Fathollahi, N. Farsad, S. A. Hashemi, and M. Mondelli, “Sparse multi-decoder
    recursive projection aggregation for Reed-Muller codes,” in <i>2021 IEEE International
    Symposium on Information Theory</i>, Virtual, Melbourne, Australia, 2021, pp.
    1082–1087.
  ista: 'Fathollahi D, Farsad N, Hashemi SA, Mondelli M. 2021. Sparse multi-decoder
    recursive projection aggregation for Reed-Muller codes. 2021 IEEE International
    Symposium on Information Theory. ISIT: International Symposium on Information
    Theory, 1082–1087.'
  mla: Fathollahi, Dorsa, et al. “Sparse Multi-Decoder Recursive Projection Aggregation
    for Reed-Muller Codes.” <i>2021 IEEE International Symposium on Information Theory</i>,
    Institute of Electrical and Electronics Engineers, 2021, pp. 1082–87, doi:<a href="https://doi.org/10.1109/isit45174.2021.9517887">10.1109/isit45174.2021.9517887</a>.
  short: D. Fathollahi, N. Farsad, S.A. Hashemi, M. Mondelli, in:, 2021 IEEE International
    Symposium on Information Theory, Institute of Electrical and Electronics Engineers,
    2021, pp. 1082–1087.
conference:
  end_date: 2021-07-20
  location: Virtual, Melbourne, Australia
  name: 'ISIT: International Symposium on Information Theory'
  start_date: 2021-07-12
date_created: 2022-01-03T11:31:26Z
date_published: 2021-09-01T00:00:00Z
date_updated: 2024-09-10T13:03:18Z
day: '01'
department:
- _id: MaMo
doi: 10.1109/isit45174.2021.9517887
external_id:
  arxiv:
  - '2011.12882'
  isi:
  - '000701502201029'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2011.12882
month: '09'
oa: 1
oa_version: Preprint
page: 1082-1087
project:
- _id: 059876FA-7A3F-11EA-A408-12923DDC885E
  name: Prix Lopez-Loretta 2019 - Marco Mondelli
publication: 2021 IEEE International Symposium on Information Theory
publication_identifier:
  eisbn:
  - 978-1-5386-8209-8
  isbn:
  - 978-1-5386-8210-4
publication_status: published
publisher: Institute of Electrical and Electronics Engineers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sparse multi-decoder recursive projection aggregation for Reed-Muller codes
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
year: '2021'
...
---
_id: '10598'
abstract:
- lang: eng
  text: ' We consider the problem of estimating a signal from measurements obtained
    via a generalized linear model. We focus on estimators based on approximate message
    passing (AMP), a family of iterative algorithms with many appealing features:
    the performance of AMP in the high-dimensional limit can be succinctly characterized
    under suitable model assumptions; AMP can also be tailored to the empirical distribution
    of the signal entries, and for a wide class of estimation problems, AMP is conjectured
    to be optimal among all polynomial-time algorithms. However, a major issue of
    AMP is that in many models (such as phase retrieval), it requires an initialization
    correlated with the ground-truth signal and independent from the measurement matrix.
    Assuming that such an initialization is available is typically not realistic.
    In this paper, we solve this problem by proposing an AMP algorithm initialized
    with a spectral estimator. With such an initialization, the standard AMP analysis
    fails since the spectral estimator depends in a complicated way on the design
    matrix. Our main contribution is a rigorous characterization of the performance
    of AMP with spectral initialization in the high-dimensional limit. The key technical
    idea is to define and analyze a two-phase artificial AMP algorithm that first
    produces the spectral estimator, and then closely approximates the iterates of
    the true AMP. We also provide numerical results that demonstrate the validity
    of the proposed approach. '
acknowledgement: The authors would like to thank Andrea Montanari for helpful discussions.
  M. Mondelli was partially supported by the 2019 Lopez-Loreta Prize. R. Venkataramanan
  was partially supported by the Alan Turing Institute under the EPSRC grant EP/N510129/1.
alternative_title:
- Proceedings of Machine Learning Research
article_processing_charge: Yes (via OA deal)
arxiv: 1
author:
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: Ramji
  full_name: Venkataramanan, Ramji
  last_name: Venkataramanan
citation:
  ama: 'Mondelli M, Venkataramanan R. Approximate message passing with spectral initialization
    for generalized linear models. In: Banerjee A, Fukumizu K, eds. <i>Proceedings
    of The 24th International Conference on Artificial Intelligence and Statistics</i>.
    Vol 130. ML Research Press; 2021:397-405.'
  apa: 'Mondelli, M., &#38; Venkataramanan, R. (2021). Approximate message passing
    with spectral initialization for generalized linear models. In A. Banerjee &#38;
    K. Fukumizu (Eds.), <i>Proceedings of The 24th International Conference on Artificial
    Intelligence and Statistics</i> (Vol. 130, pp. 397–405). Virtual, San Diego, CA,
    United States: ML Research Press.'
  chicago: Mondelli, Marco, and Ramji Venkataramanan. “Approximate Message Passing
    with Spectral Initialization for Generalized Linear Models.” In <i>Proceedings
    of The 24th International Conference on Artificial Intelligence and Statistics</i>,
    edited by Arindam Banerjee and Kenji Fukumizu, 130:397–405. ML Research Press,
    2021.
  ieee: M. Mondelli and R. Venkataramanan, “Approximate message passing with spectral
    initialization for generalized linear models,” in <i>Proceedings of The 24th International
    Conference on Artificial Intelligence and Statistics</i>, Virtual, San Diego,
    CA, United States, 2021, vol. 130, pp. 397–405.
  ista: 'Mondelli M, Venkataramanan R. 2021. Approximate message passing with spectral
    initialization for generalized linear models. Proceedings of The 24th International
    Conference on Artificial Intelligence and Statistics. AISTATS: Artificial Intelligence
    and Statistics, Proceedings of Machine Learning Research, vol. 130, 397–405.'
  mla: Mondelli, Marco, and Ramji Venkataramanan. “Approximate Message Passing with
    Spectral Initialization for Generalized Linear Models.” <i>Proceedings of The
    24th International Conference on Artificial Intelligence and Statistics</i>, edited
    by Arindam Banerjee and Kenji Fukumizu, vol. 130, ML Research Press, 2021, pp.
    397–405.
  short: M. Mondelli, R. Venkataramanan, in:, A. Banerjee, K. Fukumizu (Eds.), Proceedings
    of The 24th International Conference on Artificial Intelligence and Statistics,
    ML Research Press, 2021, pp. 397–405.
conference:
  end_date: 2021-04-15
  location: Virtual, San Diego, CA, United States
  name: 'AISTATS: Artificial Intelligence and Statistics'
  start_date: 2021-04-13
date_created: 2022-01-03T11:34:22Z
date_published: 2021-04-01T00:00:00Z
date_updated: 2024-03-07T10:36:53Z
day: '01'
department:
- _id: MaMo
editor:
- first_name: Arindam
  full_name: Banerjee, Arindam
  last_name: Banerjee
- first_name: Kenji
  full_name: Fukumizu, Kenji
  last_name: Fukumizu
external_id:
  arxiv:
  - '2010.03460'
intvolume: '       130'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://proceedings.mlr.press/v130/mondelli21a.html
month: '04'
oa: 1
oa_version: Preprint
page: 397-405
project:
- _id: 059876FA-7A3F-11EA-A408-12923DDC885E
  name: Prix Lopez-Loretta 2019 - Marco Mondelli
publication: Proceedings of The 24th International Conference on Artificial Intelligence
  and Statistics
publication_identifier:
  issn:
  - 2640-3498
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
related_material:
  record:
  - id: '12480'
    relation: later_version
    status: public
scopus_import: '1'
status: public
title: Approximate message passing with spectral initialization for generalized linear
  models
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 130
year: '2021'
...
---
_id: '10599'
abstract:
- lang: eng
  text: A two-part successive syndrome-check decoding of polar codes is proposed with
    the first part successively refining the received codeword and the second part
    checking its syndrome. A new formulation of the successive-cancellation (SC) decoding
    algorithm is presented that allows for successively refining the received codeword
    by comparing the log-likelihood ratio value of a frozen bit with its predefined
    value. The syndrome of the refined received codeword is then checked for possible
    errors. In case there are no errors, the decoding process is terminated. Otherwise,
    the decoder continues to refine the received codeword. The proposed method is
    extended to the case of SC list (SCL) decoding by terminating the decoding process
    when the syndrome of the best candidate in the list indicates no errors. Simulation
    results show that the proposed method reduces the time-complexity of SC and SCL
    decoders and their fast variants, especially at high signal-to-noise ratios.
acknowledgement: This work is supported in part by ONR grant N00014-18-1-2191. S.
  A. Hashemi was supported by a Postdoctoral Fellowship from the Natural Sciences
  and Engineering Research Council of Canada (NSERC) and by Huawei. M. Mondelli was
  partially supported by the 2019 Lopez-Loreta Prize.
article_processing_charge: No
arxiv: 1
author:
- first_name: Seyyed Ali
  full_name: Hashemi, Seyyed Ali
  last_name: Hashemi
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: John
  full_name: Cioffi, John
  last_name: Cioffi
- first_name: Andrea
  full_name: Goldsmith, Andrea
  last_name: Goldsmith
citation:
  ama: 'Hashemi SA, Mondelli M, Cioffi J, Goldsmith A. Successive syndrome-check decoding
    of polar codes. In: <i>Proceedings of the 55th Asilomar Conference on Signals,
    Systems, and Computers</i>. Vol 2021-October. Institute of Electrical and Electronics
    Engineers; 2021:943-947. doi:<a href="https://doi.org/10.1109/IEEECONF53345.2021.9723394">10.1109/IEEECONF53345.2021.9723394</a>'
  apa: 'Hashemi, S. A., Mondelli, M., Cioffi, J., &#38; Goldsmith, A. (2021). Successive
    syndrome-check decoding of polar codes. In <i>Proceedings of the 55th Asilomar
    Conference on Signals, Systems, and Computers</i> (Vol. 2021–October, pp. 943–947).
    Virtual, Pacific Grove, CA, United States: Institute of Electrical and Electronics
    Engineers. <a href="https://doi.org/10.1109/IEEECONF53345.2021.9723394">https://doi.org/10.1109/IEEECONF53345.2021.9723394</a>'
  chicago: Hashemi, Seyyed Ali, Marco Mondelli, John Cioffi, and Andrea Goldsmith.
    “Successive Syndrome-Check Decoding of Polar Codes.” In <i>Proceedings of the
    55th Asilomar Conference on Signals, Systems, and Computers</i>, 2021–October:943–47.
    Institute of Electrical and Electronics Engineers, 2021. <a href="https://doi.org/10.1109/IEEECONF53345.2021.9723394">https://doi.org/10.1109/IEEECONF53345.2021.9723394</a>.
  ieee: S. A. Hashemi, M. Mondelli, J. Cioffi, and A. Goldsmith, “Successive syndrome-check
    decoding of polar codes,” in <i>Proceedings of the 55th Asilomar Conference on
    Signals, Systems, and Computers</i>, Virtual, Pacific Grove, CA, United States,
    2021, vol. 2021–October, pp. 943–947.
  ista: 'Hashemi SA, Mondelli M, Cioffi J, Goldsmith A. 2021. Successive syndrome-check
    decoding of polar codes. Proceedings of the 55th Asilomar Conference on Signals,
    Systems, and Computers. ACSSC: Asilomar Conference on Signals, Systems, and Computers
    vol. 2021–October, 943–947.'
  mla: Hashemi, Seyyed Ali, et al. “Successive Syndrome-Check Decoding of Polar Codes.”
    <i>Proceedings of the 55th Asilomar Conference on Signals, Systems, and Computers</i>,
    vol. 2021–October, Institute of Electrical and Electronics Engineers, 2021, pp.
    943–47, doi:<a href="https://doi.org/10.1109/IEEECONF53345.2021.9723394">10.1109/IEEECONF53345.2021.9723394</a>.
  short: S.A. Hashemi, M. Mondelli, J. Cioffi, A. Goldsmith, in:, Proceedings of the
    55th Asilomar Conference on Signals, Systems, and Computers, Institute of Electrical
    and Electronics Engineers, 2021, pp. 943–947.
conference:
  end_date: 2021-11-03
  location: Virtual, Pacific Grove, CA, United States
  name: 'ACSSC: Asilomar Conference on Signals, Systems, and Computers'
  start_date: 2021-10-31
date_created: 2022-01-03T11:39:51Z
date_published: 2021-11-01T00:00:00Z
date_updated: 2024-09-10T13:03:17Z
day: '01'
department:
- _id: MaMo
doi: 10.1109/IEEECONF53345.2021.9723394
external_id:
  arxiv:
  - '2112.00057'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2112.00057'
month: '11'
oa: 1
oa_version: Preprint
page: 943-947
project:
- _id: 059876FA-7A3F-11EA-A408-12923DDC885E
  name: Prix Lopez-Loretta 2019 - Marco Mondelli
publication: Proceedings of the 55th Asilomar Conference on Signals, Systems, and
  Computers
publication_identifier:
  isbn:
  - '9781665458283'
  issn:
  - 1058-6393
publication_status: published
publisher: Institute of Electrical and Electronics Engineers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Successive syndrome-check decoding of polar codes
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2021-October
year: '2021'
...
---
_id: '10606'
abstract:
- lang: eng
  text: Cell division orientation is thought to result from a competition between
    cell geometry and polarity domains controlling the position of the mitotic spindle
    during mitosis. Depending on the level of cell shape anisotropy or the strength
    of the polarity domain, one dominates the other and determines the orientation
    of the spindle. Whether and how such competition is also at work to determine
    unequal cell division (UCD), producing daughter cells of different size, remains
    unclear. Here, we show that cell geometry and polarity domains cooperate, rather
    than compete, in positioning the cleavage plane during UCDs in early ascidian
    embryos. We found that the UCDs and their orientation at the ascidian third cleavage
    rely on the spindle tilting in an anisotropic cell shape, and cortical polarity
    domains exerting different effects on spindle astral microtubules. By systematically
    varying mitotic cell shape, we could modulate the effect of attractive and repulsive
    polarity domains and consequently generate predicted daughter cell size asymmetries
    and position. We therefore propose that the spindle position during UCD is set
    by the combined activities of cell geometry and polarity domains, where cell geometry
    modulates the effect of cortical polarity domain(s).
acknowledged_ssus:
- _id: NanoFab
- _id: Bio
acknowledgement: 'We thank members of the Heisenberg and McDougall groups for technical
  advice and discussion. We are grateful to the Bioimaging and Nanofabrication facilities
  of IST Austria and the Imaging Platform (PIM) and animal facility (CRB) of Institut
  de la Mer de Villefranche (IMEV), which is supported by EMBRC-France, whose French
  state funds are managed by the ANR within the Investments of the Future program
  under reference ANR-10-INBS-0, for continuous support. This work was supported by
  a collaborative grant from the French Government funding agency Agence National
  de la Recherche to McDougall (ANR ''MorCell'': ANR-17-CE 13-0028) and the Austrian
  Science Fund to Heisenberg (FWF: I 3601-B27).'
article_number: e75639
article_processing_charge: No
article_type: original
author:
- first_name: Benoit G
  full_name: Godard, Benoit G
  id: 33280250-F248-11E8-B48F-1D18A9856A87
  last_name: Godard
- first_name: Remi
  full_name: Dumollard, Remi
  last_name: Dumollard
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
- first_name: Alex
  full_name: Mcdougall, Alex
  last_name: Mcdougall
citation:
  ama: Godard BG, Dumollard R, Heisenberg C-PJ, Mcdougall A. Combined effect of cell
    geometry and polarity domains determines the orientation of unequal division.
    <i>eLife</i>. 2021;10. doi:<a href="https://doi.org/10.7554/eLife.75639">10.7554/eLife.75639</a>
  apa: Godard, B. G., Dumollard, R., Heisenberg, C.-P. J., &#38; Mcdougall, A. (2021).
    Combined effect of cell geometry and polarity domains determines the orientation
    of unequal division. <i>ELife</i>. eLife Sciences Publications. <a href="https://doi.org/10.7554/eLife.75639">https://doi.org/10.7554/eLife.75639</a>
  chicago: Godard, Benoit G, Remi Dumollard, Carl-Philipp J Heisenberg, and Alex Mcdougall.
    “Combined Effect of Cell Geometry and Polarity Domains Determines the Orientation
    of Unequal Division.” <i>ELife</i>. eLife Sciences Publications, 2021. <a href="https://doi.org/10.7554/eLife.75639">https://doi.org/10.7554/eLife.75639</a>.
  ieee: B. G. Godard, R. Dumollard, C.-P. J. Heisenberg, and A. Mcdougall, “Combined
    effect of cell geometry and polarity domains determines the orientation of unequal
    division,” <i>eLife</i>, vol. 10. eLife Sciences Publications, 2021.
  ista: Godard BG, Dumollard R, Heisenberg C-PJ, Mcdougall A. 2021. Combined effect
    of cell geometry and polarity domains determines the orientation of unequal division.
    eLife. 10, e75639.
  mla: Godard, Benoit G., et al. “Combined Effect of Cell Geometry and Polarity Domains
    Determines the Orientation of Unequal Division.” <i>ELife</i>, vol. 10, e75639,
    eLife Sciences Publications, 2021, doi:<a href="https://doi.org/10.7554/eLife.75639">10.7554/eLife.75639</a>.
  short: B.G. Godard, R. Dumollard, C.-P.J. Heisenberg, A. Mcdougall, ELife 10 (2021).
date_created: 2022-01-09T23:01:26Z
date_published: 2021-12-21T00:00:00Z
date_updated: 2023-08-17T06:32:44Z
day: '21'
ddc:
- '570'
department:
- _id: CaHe
doi: 10.7554/eLife.75639
external_id:
  isi:
  - '000733610100001'
file:
- access_level: open_access
  checksum: 759c7a873d554c48a6639e6350746ca6
  content_type: application/pdf
  creator: alisjak
  date_created: 2022-01-10T09:40:37Z
  date_updated: 2022-01-10T09:40:37Z
  file_id: '10611'
  file_name: 2021_eLife_Godard.pdf
  file_size: 7769934
  relation: main_file
  success: 1
file_date_updated: 2022-01-10T09:40:37Z
has_accepted_license: '1'
intvolume: '        10'
isi: 1
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: 2646861A-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03601
  name: Control of embryonic cleavage pattern
publication: eLife
publication_identifier:
  eissn:
  - 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Combined effect of cell geometry and polarity domains determines the orientation
  of unequal division
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 10
year: '2021'
...
---
_id: '10607'
abstract:
- lang: eng
  text: The evidence linking innate immunity mechanisms and neurodegenerative diseases
    is growing, but the specific mechanisms are incompletely understood. Experimental
    data suggest that microglial TLR4 mediates the uptake and clearance of α-synuclein
    also termed synucleinophagy. The accumulation of misfolded α-synuclein throughout
    the brain is central to Parkinson's disease (PD). The distribution and progression
    of the pathology is often attributed to the propagation of α-synuclein. Here,
    we apply a classical α-synuclein propagation model of prodromal PD in wild type
    and TLR4 deficient mice to study the role of TLR4 in the progression of the disease.
    Our data suggest that TLR4 deficiency facilitates the α-synuclein seed spreading
    associated with reduced lysosomal activity of microglia. Three months after seed
    inoculation, more pronounced proteinase K-resistant α-synuclein inclusion pathology
    is observed in mice with TLR4 deficiency. The facilitated propagation of α-synuclein
    is associated with early loss of dopamine transporter (DAT) signal in the striatum
    and loss of dopaminergic neurons in substantia nigra pars compacta of TLR4 deficient
    mice. These new results support TLR4 signaling as a putative target for disease
    modification to slow the progression of PD and related disorders.
acknowledgement: This study was supported by grants of the Austrian Science Fund (FWF)
  F4414 and W1206-08. Electron microscopy was performed at the Scientific Service
  Units (SSU) of IST-Austria through resources provided by the Electron Microscopy
  Facility.
article_processing_charge: No
article_type: original
author:
- first_name: Serena
  full_name: Venezia, Serena
  last_name: Venezia
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: Gregor K.
  full_name: Wenning, Gregor K.
  last_name: Wenning
- first_name: Nadia
  full_name: Stefanova, Nadia
  last_name: Stefanova
citation:
  ama: Venezia S, Kaufmann W, Wenning GK, Stefanova N. Toll-like receptor 4 deficiency
    facilitates α-synuclein propagation and neurodegeneration in a mouse model of
    prodromal Parkinson’s disease. <i>Parkinsonism &#38; Related Disorders</i>. 2021;91:59-65.
    doi:<a href="https://doi.org/10.1016/j.parkreldis.2021.09.007">10.1016/j.parkreldis.2021.09.007</a>
  apa: Venezia, S., Kaufmann, W., Wenning, G. K., &#38; Stefanova, N. (2021). Toll-like
    receptor 4 deficiency facilitates α-synuclein propagation and neurodegeneration
    in a mouse model of prodromal Parkinson’s disease. <i>Parkinsonism &#38; Related
    Disorders</i>. Elsevier. <a href="https://doi.org/10.1016/j.parkreldis.2021.09.007">https://doi.org/10.1016/j.parkreldis.2021.09.007</a>
  chicago: Venezia, Serena, Walter Kaufmann, Gregor K. Wenning, and Nadia Stefanova.
    “Toll-like Receptor 4 Deficiency Facilitates α-Synuclein Propagation and Neurodegeneration
    in a Mouse Model of Prodromal Parkinson’s Disease.” <i>Parkinsonism &#38; Related
    Disorders</i>. Elsevier, 2021. <a href="https://doi.org/10.1016/j.parkreldis.2021.09.007">https://doi.org/10.1016/j.parkreldis.2021.09.007</a>.
  ieee: S. Venezia, W. Kaufmann, G. K. Wenning, and N. Stefanova, “Toll-like receptor
    4 deficiency facilitates α-synuclein propagation and neurodegeneration in a mouse
    model of prodromal Parkinson’s disease,” <i>Parkinsonism &#38; Related Disorders</i>,
    vol. 91. Elsevier, pp. 59–65, 2021.
  ista: Venezia S, Kaufmann W, Wenning GK, Stefanova N. 2021. Toll-like receptor 4
    deficiency facilitates α-synuclein propagation and neurodegeneration in a mouse
    model of prodromal Parkinson’s disease. Parkinsonism &#38; Related Disorders.
    91, 59–65.
  mla: Venezia, Serena, et al. “Toll-like Receptor 4 Deficiency Facilitates α-Synuclein
    Propagation and Neurodegeneration in a Mouse Model of Prodromal Parkinson’s Disease.”
    <i>Parkinsonism &#38; Related Disorders</i>, vol. 91, Elsevier, 2021, pp. 59–65,
    doi:<a href="https://doi.org/10.1016/j.parkreldis.2021.09.007">10.1016/j.parkreldis.2021.09.007</a>.
  short: S. Venezia, W. Kaufmann, G.K. Wenning, N. Stefanova, Parkinsonism &#38; Related
    Disorders 91 (2021) 59–65.
date_created: 2022-01-09T23:01:26Z
date_published: 2021-10-01T00:00:00Z
date_updated: 2023-08-17T06:36:01Z
day: '01'
ddc:
- '610'
department:
- _id: EM-Fac
doi: 10.1016/j.parkreldis.2021.09.007
external_id:
  isi:
  - '000701142900012'
  pmid:
  - '34530328'
file:
- access_level: open_access
  checksum: 360681585acb51e80d17c6b213c56b55
  content_type: application/pdf
  creator: alisjak
  date_created: 2022-01-10T13:41:40Z
  date_updated: 2022-01-10T13:41:40Z
  file_id: '10612'
  file_name: 2021_Parkinsonism_Venezia.pdf
  file_size: 6848513
  relation: main_file
  success: 1
file_date_updated: 2022-01-10T13:41:40Z
has_accepted_license: '1'
intvolume: '        91'
isi: 1
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 59-65
pmid: 1
publication: Parkinsonism & Related Disorders
publication_identifier:
  eissn:
  - 1873-5126
  issn:
  - 1353-8020
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Toll-like receptor 4 deficiency facilitates α-synuclein propagation and neurodegeneration
  in a mouse model of prodromal Parkinson's disease
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 91
year: '2021'
...
---
_id: '10608'
abstract:
- lang: eng
  text: We consider infinite-dimensional properties in coarse geometry for hyperspaces
    consisting of finite subsets of metric spaces with the Hausdorff metric. We see
    that several infinite-dimensional properties are preserved by taking the hyperspace
    of subsets with at most n points. On the other hand, we prove that, if a metric
    space contains a sequence of long intervals coarsely, then its hyperspace of finite
    subsets is not coarsely embeddable into any uniformly convex Banach space. As
    a corollary, the hyperspace of finite subsets of the real line is not coarsely
    embeddable into any uniformly convex Banach space. It is also shown that every
    (not necessarily bounded geometry) metric space with straight finite decomposition
    complexity has metric sparsification property.
acknowledgement: We would like to thank the referees for their careful reading and
  the comments that improved our work. The third named author would like to thank
  the Division of Mathematics, Physics and Earth Sciences of the Graduate School of
  Science and Engineering of Ehime University and the second named author for hosting
  his visit in June 2018. Open access funding provided by Institute of Science and
  Technology (IST Austria).
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Thomas
  full_name: Weighill, Thomas
  last_name: Weighill
- first_name: Takamitsu
  full_name: Yamauchi, Takamitsu
  last_name: Yamauchi
- first_name: Nicolò
  full_name: Zava, Nicolò
  id: c8b3499c-7a77-11eb-b046-aa368cbbf2ad
  last_name: Zava
citation:
  ama: Weighill T, Yamauchi T, Zava N. Coarse infinite-dimensionality of hyperspaces
    of finite subsets. <i>European Journal of Mathematics</i>. 2021. doi:<a href="https://doi.org/10.1007/s40879-021-00515-3">10.1007/s40879-021-00515-3</a>
  apa: Weighill, T., Yamauchi, T., &#38; Zava, N. (2021). Coarse infinite-dimensionality
    of hyperspaces of finite subsets. <i>European Journal of Mathematics</i>. Springer
    Nature. <a href="https://doi.org/10.1007/s40879-021-00515-3">https://doi.org/10.1007/s40879-021-00515-3</a>
  chicago: Weighill, Thomas, Takamitsu Yamauchi, and Nicolò Zava. “Coarse Infinite-Dimensionality
    of Hyperspaces of Finite Subsets.” <i>European Journal of Mathematics</i>. Springer
    Nature, 2021. <a href="https://doi.org/10.1007/s40879-021-00515-3">https://doi.org/10.1007/s40879-021-00515-3</a>.
  ieee: T. Weighill, T. Yamauchi, and N. Zava, “Coarse infinite-dimensionality of
    hyperspaces of finite subsets,” <i>European Journal of Mathematics</i>. Springer
    Nature, 2021.
  ista: Weighill T, Yamauchi T, Zava N. 2021. Coarse infinite-dimensionality of hyperspaces
    of finite subsets. European Journal of Mathematics.
  mla: Weighill, Thomas, et al. “Coarse Infinite-Dimensionality of Hyperspaces of
    Finite Subsets.” <i>European Journal of Mathematics</i>, Springer Nature, 2021,
    doi:<a href="https://doi.org/10.1007/s40879-021-00515-3">10.1007/s40879-021-00515-3</a>.
  short: T. Weighill, T. Yamauchi, N. Zava, European Journal of Mathematics (2021).
date_created: 2022-01-09T23:01:27Z
date_published: 2021-12-30T00:00:00Z
date_updated: 2022-01-10T08:36:55Z
day: '30'
ddc:
- '500'
department:
- _id: HeEd
doi: 10.1007/s40879-021-00515-3
file:
- access_level: open_access
  checksum: c435dcfa1ad3aadc5cdd7366bc7f4e98
  content_type: application/pdf
  creator: cchlebak
  date_created: 2022-01-10T08:33:22Z
  date_updated: 2022-01-10T08:33:22Z
  file_id: '10610'
  file_name: 2021_EuJournalMath_Weighill.pdf
  file_size: 384908
  relation: main_file
  success: 1
file_date_updated: 2022-01-10T08:33:22Z
has_accepted_license: '1'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: European Journal of Mathematics
publication_identifier:
  eissn:
  - 2199-6768
  issn:
  - 2199-675X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Coarse infinite-dimensionality of hyperspaces of finite subsets
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2021'
...
---
_id: '10609'
abstract:
- lang: eng
  text: "We study Multi-party computation (MPC) in the setting of subversion, where
    the adversary tampers with the machines of honest parties. Our goal is to construct
    actively secure MPC protocols where parties are corrupted adaptively by an adversary
    (as in the standard adaptive security setting), and in addition, honest parties’
    machines are compromised.\r\nThe idea of reverse firewalls (RF) was introduced
    at EUROCRYPT’15 by Mironov and Stephens-Davidowitz as an approach to protecting
    protocols against corruption of honest parties’ devices. Intuitively, an RF for
    a party   P  is an external entity that sits between   P  and the outside world
    and whose scope is to sanitize   P ’s incoming and outgoing messages in the face
    of subversion of their computer. Mironov and Stephens-Davidowitz constructed a
    protocol for passively-secure two-party computation. At CRYPTO’20, Chakraborty,
    Dziembowski and Nielsen constructed a protocol for secure computation with firewalls
    that improved on this result, both by extending it to multi-party computation
    protocol, and considering active security in the presence of static corruptions.
    In this paper, we initiate the study of RF for MPC in the adaptive setting. We
    put forward a definition for adaptively secure MPC in the reverse firewall setting,
    explore relationships among the security notions, and then construct reverse firewalls
    for MPC in this stronger setting of adaptive security. We also resolve the open
    question of Chakraborty, Dziembowski and Nielsen by removing the need for a trusted
    setup in constructing RF for MPC. Towards this end, we construct reverse firewalls
    for adaptively secure augmented coin tossing and adaptively secure zero-knowledge
    protocols and obtain a constant round adaptively secure MPC protocol in the reverse
    firewall setting without setup. Along the way, we propose a new multi-party adaptively
    secure coin tossing protocol in the plain model, that is of independent interest."
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Suvradip
  full_name: Chakraborty, Suvradip
  id: B9CD0494-D033-11E9-B219-A439E6697425
  last_name: Chakraborty
- first_name: Chaya
  full_name: Ganesh, Chaya
  last_name: Ganesh
- first_name: Mahak
  full_name: Pancholi, Mahak
  last_name: Pancholi
- first_name: Pratik
  full_name: Sarkar, Pratik
  last_name: Sarkar
citation:
  ama: 'Chakraborty S, Ganesh C, Pancholi M, Sarkar P. Reverse firewalls for adaptively
    secure MPC without setup. In: <i>27th International Conference on the Theory and
    Application of Cryptology and Information Security</i>. Vol 13091. Springer Nature;
    2021:335-364. doi:<a href="https://doi.org/10.1007/978-3-030-92075-3_12">10.1007/978-3-030-92075-3_12</a>'
  apa: 'Chakraborty, S., Ganesh, C., Pancholi, M., &#38; Sarkar, P. (2021). Reverse
    firewalls for adaptively secure MPC without setup. In <i>27th International Conference
    on the Theory and Application of Cryptology and Information Security</i> (Vol.
    13091, pp. 335–364). Virtual, Singapore: Springer Nature. <a href="https://doi.org/10.1007/978-3-030-92075-3_12">https://doi.org/10.1007/978-3-030-92075-3_12</a>'
  chicago: Chakraborty, Suvradip, Chaya Ganesh, Mahak Pancholi, and Pratik Sarkar.
    “Reverse Firewalls for Adaptively Secure MPC without Setup.” In <i>27th International
    Conference on the Theory and Application of Cryptology and Information Security</i>,
    13091:335–64. Springer Nature, 2021. <a href="https://doi.org/10.1007/978-3-030-92075-3_12">https://doi.org/10.1007/978-3-030-92075-3_12</a>.
  ieee: S. Chakraborty, C. Ganesh, M. Pancholi, and P. Sarkar, “Reverse firewalls
    for adaptively secure MPC without setup,” in <i>27th International Conference
    on the Theory and Application of Cryptology and Information Security</i>, Virtual,
    Singapore, 2021, vol. 13091, pp. 335–364.
  ista: 'Chakraborty S, Ganesh C, Pancholi M, Sarkar P. 2021. Reverse firewalls for
    adaptively secure MPC without setup. 27th International Conference on the Theory
    and Application of Cryptology and Information Security. ASIACRYPT: International
    Conference on Cryptology in Asia, LNCS, vol. 13091, 335–364.'
  mla: Chakraborty, Suvradip, et al. “Reverse Firewalls for Adaptively Secure MPC
    without Setup.” <i>27th International Conference on the Theory and Application
    of Cryptology and Information Security</i>, vol. 13091, Springer Nature, 2021,
    pp. 335–64, doi:<a href="https://doi.org/10.1007/978-3-030-92075-3_12">10.1007/978-3-030-92075-3_12</a>.
  short: S. Chakraborty, C. Ganesh, M. Pancholi, P. Sarkar, in:, 27th International
    Conference on the Theory and Application of Cryptology and Information Security,
    Springer Nature, 2021, pp. 335–364.
conference:
  end_date: 2021-12-10
  location: Virtual, Singapore
  name: 'ASIACRYPT: International Conference on Cryptology in Asia'
  start_date: 2021-12-06
date_created: 2022-01-09T23:01:27Z
date_published: 2021-12-01T00:00:00Z
date_updated: 2023-08-17T06:34:41Z
day: '01'
department:
- _id: KrPi
doi: 10.1007/978-3-030-92075-3_12
ec_funded: 1
external_id:
  isi:
  - '000927876200012'
intvolume: '     13091'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprint.iacr.org/2021/1262
month: '12'
oa: 1
oa_version: Preprint
page: 335-364
project:
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '682815'
  name: Teaching Old Crypto New Tricks
publication: 27th International Conference on the Theory and Application of Cryptology
  and Information Security
publication_identifier:
  eisbn:
  - 978-3-030-92075-3
  eissn:
  - 1611-3349
  isbn:
  - 978-3-030-92074-6
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Reverse firewalls for adaptively secure MPC without setup
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13091
year: '2021'
...
---
_id: '10613'
abstract:
- lang: eng
  text: Motivated by the recent preprint [\emph{arXiv:2004.08412}] by Ayala, Carinci,
    and Redig, we first provide a general framework for the study of scaling limits
    of higher-order fields. Then, by considering the same class of infinite interacting
    particle systems as in [\emph{arXiv:2004.08412}], namely symmetric simple exclusion
    and inclusion processes in the d-dimensional Euclidean lattice, we prove the hydrodynamic
    limit, and convergence for the equilibrium fluctuations, of higher-order fields.
    In particular, the limit fields exhibit a tensor structure. Our fluctuation result
    differs from that in [\emph{arXiv:2004.08412}], since we considered-dimensional
    Euclidean lattice, we prove the hydrodynamic limit, and convergence for the equilibrium
    fluctuations, of higher-order fields. In particular, the limit fields exhibit
    a tensor structure. Our fluctuation result differs from that in [\emph{arXiv:2004.08412}],
    since we consider a different notion of higher-order fluctuation fields.
acknowledgement: "F.S. would like to thank Mario Ayala and Frank Redig for useful
  discussions. J.P.C. acknowledges partial financial support from the US National
  Science Foundation (DMS-1855604). F.S. was financially supported by the European
  Union’s Horizon 2020 research and innovation programme under the Marie-Skłodowska-Curie
  grant agreement No. 754411.\r\n"
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Joe P.
  full_name: Chen, Joe P.
  last_name: Chen
- first_name: Federico
  full_name: Sau, Federico
  id: E1836206-9F16-11E9-8814-AEFDE5697425
  last_name: Sau
citation:
  ama: Chen JP, Sau F. Higher-order hydrodynamics and equilibrium fluctuations of
    interacting particle systems. <i>Markov Processes And Related Fields</i>. 2021;27(3):339-380.
  apa: Chen, J. P., &#38; Sau, F. (2021). Higher-order hydrodynamics and equilibrium
    fluctuations of interacting particle systems. <i>Markov Processes And Related
    Fields</i>. Polymat Publishing.
  chicago: Chen, Joe P., and Federico Sau. “Higher-Order Hydrodynamics and Equilibrium
    Fluctuations of Interacting Particle Systems.” <i>Markov Processes And Related
    Fields</i>. Polymat Publishing, 2021.
  ieee: J. P. Chen and F. Sau, “Higher-order hydrodynamics and equilibrium fluctuations
    of interacting particle systems,” <i>Markov Processes And Related Fields</i>,
    vol. 27, no. 3. Polymat Publishing, pp. 339–380, 2021.
  ista: Chen JP, Sau F. 2021. Higher-order hydrodynamics and equilibrium fluctuations
    of interacting particle systems. Markov Processes And Related Fields. 27(3), 339–380.
  mla: Chen, Joe P., and Federico Sau. “Higher-Order Hydrodynamics and Equilibrium
    Fluctuations of Interacting Particle Systems.” <i>Markov Processes And Related
    Fields</i>, vol. 27, no. 3, Polymat Publishing, 2021, pp. 339–80.
  short: J.P. Chen, F. Sau, Markov Processes And Related Fields 27 (2021) 339–380.
date_created: 2022-01-10T14:02:31Z
date_published: 2021-03-16T00:00:00Z
date_updated: 2022-01-10T15:29:08Z
day: '16'
department:
- _id: JaMa
ec_funded: 1
external_id:
  arxiv:
  - '2008.13403'
intvolume: '        27'
issue: '3'
keyword:
- interacting particle systems
- higher-order fields
- hydrodynamic limit
- equilibrium fluctuations
- duality
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2008.13403
month: '03'
oa: 1
oa_version: Preprint
page: 339-380
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Markov Processes And Related Fields
publication_identifier:
  issn:
  - 1024-2953
publication_status: published
publisher: Polymat Publishing
quality_controlled: '1'
related_material:
  link:
  - description: Link to Abstract on publisher's website
    relation: other
    url: http://math-mprf.org/journal/articles/id1614/
  - description: Referred to in Abstract
    relation: used_for_analysis_in
    url: https://arxiv.org/abs/2004.08412
status: public
title: Higher-order hydrodynamics and equilibrium fluctuations of interacting particle
  systems
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 27
year: '2021'
...
