[{"status":"public","related_material":{"record":[{"status":"public","id":"6898","relation":"used_in_publication"}]},"date_published":"2019-09-12T00:00:00Z","publisher":"Springer Nature","doi":"10.6084/m9.figshare.9808907.v1","_id":"9901","department":[{"_id":"FyKo"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.6084/m9.figshare.9808907.v1"}],"day":"12","oa":1,"title":"Additional file 9 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction","year":"2019","citation":{"short":"O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov, E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).","ieee":"O. M. Sigalova <i>et al.</i>, “Additional file 9 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction.” Springer Nature, 2019.","chicago":"Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional File 9 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction.” Springer Nature, 2019. <a href=\"https://doi.org/10.6084/m9.figshare.9808907.v1\">https://doi.org/10.6084/m9.figshare.9808907.v1</a>.","ista":"Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov EE, Burskaia V, Gelfand MS. 2019. Additional file 9 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction, Springer Nature, <a href=\"https://doi.org/10.6084/m9.figshare.9808907.v1\">10.6084/m9.figshare.9808907.v1</a>.","ama":"Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 9 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. 2019. doi:<a href=\"https://doi.org/10.6084/m9.figshare.9808907.v1\">10.6084/m9.figshare.9808907.v1</a>","mla":"Sigalova, Olga M., et al. <i>Additional File 9 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>. Springer Nature, 2019, doi:<a href=\"https://doi.org/10.6084/m9.figshare.9808907.v1\">10.6084/m9.figshare.9808907.v1</a>.","apa":"Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 9 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. <a href=\"https://doi.org/10.6084/m9.figshare.9808907.v1\">https://doi.org/10.6084/m9.figshare.9808907.v1</a>"},"oa_version":"Published Version","date_created":"2021-08-12T10:54:03Z","type":"research_data_reference","article_processing_charge":"No","date_updated":"2023-08-30T06:20:22Z","abstract":[{"text":"Clusters of Orthologous Genes (COGs) and corresponding functional categories assigned to OGs. (CSV 117 kb)","lang":"eng"}],"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","month":"09","author":[{"first_name":"Olga M.","full_name":"Sigalova, Olga M.","last_name":"Sigalova"},{"last_name":"Chaplin","full_name":"Chaplin, Andrei V.","first_name":"Andrei V."},{"orcid":"0000-0003-1006-6639","id":"C4558D3C-6102-11E9-A62E-F418E6697425","last_name":"Bochkareva","full_name":"Bochkareva, Olga","first_name":"Olga"},{"first_name":"Pavel V.","full_name":"Shelyakin, Pavel V.","last_name":"Shelyakin"},{"last_name":"Filaretov","full_name":"Filaretov, Vsevolod A.","first_name":"Vsevolod A."},{"first_name":"Evgeny E.","full_name":"Akkuratov, Evgeny E.","last_name":"Akkuratov"},{"first_name":"Valentina","last_name":"Burskaia","full_name":"Burskaia, Valentina"},{"last_name":"Gelfand","full_name":"Gelfand, Mikhail S.","first_name":"Mikhail S."}]},{"type":"journal_article","date_created":"2018-12-11T11:46:17Z","citation":{"ieee":"D. Virosztek, “Jointly convex quantum Jensen divergences,” <i>Linear Algebra and Its Applications</i>, vol. 576. Elsevier, pp. 67–78, 2019.","short":"D. Virosztek, Linear Algebra and Its Applications 576 (2019) 67–78.","ista":"Virosztek D. 2019. Jointly convex quantum Jensen divergences. Linear Algebra and Its Applications. 576, 67–78.","chicago":"Virosztek, Daniel. “Jointly Convex Quantum Jensen Divergences.” <i>Linear Algebra and Its Applications</i>. Elsevier, 2019. <a href=\"https://doi.org/10.1016/j.laa.2018.03.002\">https://doi.org/10.1016/j.laa.2018.03.002</a>.","ama":"Virosztek D. Jointly convex quantum Jensen divergences. <i>Linear Algebra and Its Applications</i>. 2019;576:67-78. doi:<a href=\"https://doi.org/10.1016/j.laa.2018.03.002\">10.1016/j.laa.2018.03.002</a>","mla":"Virosztek, Daniel. “Jointly Convex Quantum Jensen Divergences.” <i>Linear Algebra and Its Applications</i>, vol. 576, Elsevier, 2019, pp. 67–78, doi:<a href=\"https://doi.org/10.1016/j.laa.2018.03.002\">10.1016/j.laa.2018.03.002</a>.","apa":"Virosztek, D. (2019). Jointly convex quantum Jensen divergences. <i>Linear Algebra and Its Applications</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.laa.2018.03.002\">https://doi.org/10.1016/j.laa.2018.03.002</a>"},"oa_version":"Preprint","publication":"Linear Algebra and Its Applications","month":"09","arxiv":1,"acknowledgement":"The author was supported by the ISTFELLOW program of the Institute of Science and Technology Austria (project code IC1027FELL01) and partially supported by the Hungarian National Research, Development and Innovation Office – NKFIH (grant no. K124152)","quality_controlled":"1","isi":1,"intvolume":"       576","date_published":"2019-09-01T00:00:00Z","doi":"10.1016/j.laa.2018.03.002","status":"public","oa":1,"day":"01","main_file_link":[{"url":"https://arxiv.org/abs/1712.05324","open_access":"1"}],"external_id":{"arxiv":["1712.05324"],"isi":["000470955300005"]},"volume":576,"year":"2019","scopus_import":"1","author":[{"orcid":"0000-0003-1109-5511","first_name":"Daniel","full_name":"Virosztek, Daniel","id":"48DB45DA-F248-11E8-B48F-1D18A9856A87","last_name":"Virosztek"}],"language":[{"iso":"eng"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","abstract":[{"lang":"eng","text":"We investigate the quantum Jensen divergences from the viewpoint of joint convexity. It turns out that the set of the functions which generate jointly convex quantum Jensen divergences on positive matrices coincides with the Matrix Entropy Class which has been introduced by Chen and Tropp quite recently."}],"date_updated":"2023-08-24T14:31:47Z","article_processing_charge":"No","_id":"405","ec_funded":1,"article_type":"original","publist_id":"7424","publisher":"Elsevier","publication_status":"published","title":"Jointly convex quantum Jensen divergences","page":"67-78","project":[{"grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme"}],"department":[{"_id":"LaEr"}]},{"status":"public","date_published":"2019-02-01T00:00:00Z","doi":"10.1007/s00440-018-0835-z","intvolume":"       173","isi":1,"external_id":{"isi":["000459396500007"]},"day":"01","oa":1,"publication":"Probability Theory and Related Fields","oa_version":"Published Version","citation":{"ama":"Ajanki OH, Erdös L, Krüger TH. Stability of the matrix Dyson equation and random matrices with correlations. <i>Probability Theory and Related Fields</i>. 2019;173(1-2):293–373. doi:<a href=\"https://doi.org/10.1007/s00440-018-0835-z\">10.1007/s00440-018-0835-z</a>","apa":"Ajanki, O. H., Erdös, L., &#38; Krüger, T. H. (2019). Stability of the matrix Dyson equation and random matrices with correlations. <i>Probability Theory and Related Fields</i>. Springer. <a href=\"https://doi.org/10.1007/s00440-018-0835-z\">https://doi.org/10.1007/s00440-018-0835-z</a>","mla":"Ajanki, Oskari H., et al. “Stability of the Matrix Dyson Equation and Random Matrices with Correlations.” <i>Probability Theory and Related Fields</i>, vol. 173, no. 1–2, Springer, 2019, pp. 293–373, doi:<a href=\"https://doi.org/10.1007/s00440-018-0835-z\">10.1007/s00440-018-0835-z</a>.","ieee":"O. H. Ajanki, L. Erdös, and T. H. Krüger, “Stability of the matrix Dyson equation and random matrices with correlations,” <i>Probability Theory and Related Fields</i>, vol. 173, no. 1–2. Springer, pp. 293–373, 2019.","short":"O.H. Ajanki, L. Erdös, T.H. Krüger, Probability Theory and Related Fields 173 (2019) 293–373.","chicago":"Ajanki, Oskari H, László Erdös, and Torben H Krüger. “Stability of the Matrix Dyson Equation and Random Matrices with Correlations.” <i>Probability Theory and Related Fields</i>. Springer, 2019. <a href=\"https://doi.org/10.1007/s00440-018-0835-z\">https://doi.org/10.1007/s00440-018-0835-z</a>.","ista":"Ajanki OH, Erdös L, Krüger TH. 2019. Stability of the matrix Dyson equation and random matrices with correlations. Probability Theory and Related Fields. 173(1–2), 293–373."},"date_created":"2018-12-11T11:46:25Z","type":"journal_article","quality_controlled":"1","license":"https://creativecommons.org/licenses/by/4.0/","acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria).\r\n","month":"02","publication_status":"published","file_date_updated":"2020-07-14T12:46:26Z","ddc":["510"],"publisher":"Springer","publist_id":"7394","article_type":"original","ec_funded":1,"_id":"429","department":[{"_id":"LaEr"}],"project":[{"grant_number":"338804","_id":"258DCDE6-B435-11E9-9278-68D0E5697425","name":"Random matrices, universality and disordered quantum systems","call_identifier":"FP7"},{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"title":"Stability of the matrix Dyson equation and random matrices with correlations","page":"293–373","issue":"1-2","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"scopus_import":"1","year":"2019","volume":173,"has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","file":[{"file_id":"5720","relation":"main_file","access_level":"open_access","content_type":"application/pdf","creator":"dernst","file_size":1201840,"date_created":"2018-12-17T16:12:08Z","checksum":"f9354fa5c71f9edd17132588f0dc7d01","file_name":"2018_ProbTheory_Ajanki.pdf","date_updated":"2020-07-14T12:46:26Z"}],"date_updated":"2023-08-24T14:39:00Z","abstract":[{"text":"We consider real symmetric or complex hermitian random matrices with correlated entries. We prove local laws for the resolvent and universality of the local eigenvalue statistics in the bulk of the spectrum. The correlations have fast decay but are otherwise of general form. The key novelty is the detailed stability analysis of the corresponding matrix valued Dyson equation whose solution is the deterministic limit of the resolvent.","lang":"eng"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","language":[{"iso":"eng"}],"publication_identifier":{"issn":["01788051"],"eissn":["14322064"]},"author":[{"id":"36F2FB7E-F248-11E8-B48F-1D18A9856A87","last_name":"Ajanki","full_name":"Ajanki, Oskari H","first_name":"Oskari H"},{"orcid":"0000-0001-5366-9603","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","last_name":"Erdös","full_name":"Erdös, László","first_name":"László"},{"orcid":"0000-0002-4821-3297","id":"3020C786-F248-11E8-B48F-1D18A9856A87","last_name":"Krüger","full_name":"Krüger, Torben H","first_name":"Torben H"}]},{"isi":1,"date_published":"2019-10-01T00:00:00Z","doi":"10.4171/JEMS/896","intvolume":"        21","status":"public","oa":1,"external_id":{"isi":["000480413600002"],"arxiv":["1604.03382"]},"day":"01","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1604.03382"}],"type":"journal_article","citation":{"ieee":"T. Hausel, M. Mereb, and M. Wong, “Arithmetic and representation theory of wild character varieties,” <i>Journal of the European Mathematical Society</i>, vol. 21, no. 10. European Mathematical Society, pp. 2995–3052, 2019.","short":"T. Hausel, M. Mereb, M. Wong, Journal of the European Mathematical Society 21 (2019) 2995–3052.","chicago":"Hausel, Tamás, Martin Mereb, and Michael Wong. “Arithmetic and Representation Theory of Wild Character Varieties.” <i>Journal of the European Mathematical Society</i>. European Mathematical Society, 2019. <a href=\"https://doi.org/10.4171/JEMS/896\">https://doi.org/10.4171/JEMS/896</a>.","ista":"Hausel T, Mereb M, Wong M. 2019. Arithmetic and representation theory of wild character varieties. Journal of the European Mathematical Society. 21(10), 2995–3052.","ama":"Hausel T, Mereb M, Wong M. Arithmetic and representation theory of wild character varieties. <i>Journal of the European Mathematical Society</i>. 2019;21(10):2995-3052. doi:<a href=\"https://doi.org/10.4171/JEMS/896\">10.4171/JEMS/896</a>","mla":"Hausel, Tamás, et al. “Arithmetic and Representation Theory of Wild Character Varieties.” <i>Journal of the European Mathematical Society</i>, vol. 21, no. 10, European Mathematical Society, 2019, pp. 2995–3052, doi:<a href=\"https://doi.org/10.4171/JEMS/896\">10.4171/JEMS/896</a>.","apa":"Hausel, T., Mereb, M., &#38; Wong, M. (2019). Arithmetic and representation theory of wild character varieties. <i>Journal of the European Mathematical Society</i>. European Mathematical Society. <a href=\"https://doi.org/10.4171/JEMS/896\">https://doi.org/10.4171/JEMS/896</a>"},"oa_version":"Preprint","date_created":"2018-12-11T11:46:29Z","publication":"Journal of the European Mathematical Society","month":"10","arxiv":1,"quality_controlled":"1","ec_funded":1,"_id":"439","publisher":"European Mathematical Society","publist_id":"7384","article_type":"original","publication_status":"published","page":"2995-3052","title":"Arithmetic and representation theory of wild character varieties","project":[{"grant_number":"320593","call_identifier":"FP7","name":"Arithmetic and physics of Higgs moduli spaces","_id":"25E549F4-B435-11E9-9278-68D0E5697425"}],"department":[{"_id":"TaHa"}],"volume":21,"issue":"10","scopus_import":"1","year":"2019","author":[{"full_name":"Hausel, Tamas","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","last_name":"Hausel","first_name":"Tamas"},{"first_name":"Martin","id":"43D735EE-F248-11E8-B48F-1D18A9856A87","last_name":"Mereb","full_name":"Mereb, Martin"},{"first_name":"Michael","last_name":"Wong","full_name":"Wong, Michael"}],"publication_identifier":{"eissn":["1435-9855"]},"language":[{"iso":"eng"}],"abstract":[{"text":"We count points over a finite field on wild character varieties,of Riemann surfaces for singularities with regular semisimple leading term. The new feature in our counting formulas is the appearance of characters of Yokonuma–Hecke algebras. Our result leads to the conjecture that the mixed Hodge polynomials of these character varieties agree with previously conjectured perverse Hodge polynomials of certain twisted parabolic Higgs moduli spaces, indicating the\r\npossibility of a P = W conjecture for a suitable wild Hitchin system.","lang":"eng"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","article_processing_charge":"No","date_updated":"2023-08-24T14:24:49Z"},{"type":"journal_article","publication":"European Journal of Mathematics","oa_version":"Preprint","citation":{"apa":"Kalinin, N., &#38; Shkolnikov, M. (2019). Tropical formulae for summation over a part of SL(2,Z). <i>European Journal of Mathematics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s40879-018-0218-0\">https://doi.org/10.1007/s40879-018-0218-0</a>","mla":"Kalinin, Nikita, and Mikhail Shkolnikov. “Tropical Formulae for Summation over a Part of SL(2,Z).” <i>European Journal of Mathematics</i>, vol. 5, no. 3, Springer Nature, 2019, pp. 909–928, doi:<a href=\"https://doi.org/10.1007/s40879-018-0218-0\">10.1007/s40879-018-0218-0</a>.","ama":"Kalinin N, Shkolnikov M. Tropical formulae for summation over a part of SL(2,Z). <i>European Journal of Mathematics</i>. 2019;5(3):909–928. doi:<a href=\"https://doi.org/10.1007/s40879-018-0218-0\">10.1007/s40879-018-0218-0</a>","ista":"Kalinin N, Shkolnikov M. 2019. Tropical formulae for summation over a part of SL(2,Z). European Journal of Mathematics. 5(3), 909–928.","chicago":"Kalinin, Nikita, and Mikhail Shkolnikov. “Tropical Formulae for Summation over a Part of SL(2,Z).” <i>European Journal of Mathematics</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1007/s40879-018-0218-0\">https://doi.org/10.1007/s40879-018-0218-0</a>.","ieee":"N. Kalinin and M. Shkolnikov, “Tropical formulae for summation over a part of SL(2,Z),” <i>European Journal of Mathematics</i>, vol. 5, no. 3. Springer Nature, pp. 909–928, 2019.","short":"N. Kalinin, M. Shkolnikov, European Journal of Mathematics 5 (2019) 909–928."},"date_created":"2018-12-11T11:46:29Z","arxiv":1,"month":"09","quality_controlled":"1","doi":"10.1007/s40879-018-0218-0","date_published":"2019-09-15T00:00:00Z","intvolume":"         5","status":"public","external_id":{"arxiv":["1711.02089"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1711.02089"}],"day":"15","oa":1,"volume":5,"issue":"3","scopus_import":1,"year":"2019","language":[{"iso":"eng"}],"author":[{"full_name":"Kalinin, Nikita","last_name":"Kalinin","first_name":"Nikita"},{"first_name":"Mikhail","id":"35084A62-F248-11E8-B48F-1D18A9856A87","last_name":"Shkolnikov","full_name":"Shkolnikov, Mikhail","orcid":"0000-0002-4310-178X"}],"publication_identifier":{"issn":["2199-675X"],"eissn":["2199-6768"]},"article_processing_charge":"No","date_updated":"2021-01-12T07:56:46Z","user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","publisher":"Springer Nature","publist_id":"7382","article_type":"original","ec_funded":1,"_id":"441","publication_status":"published","project":[{"_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7","grant_number":"291734"}],"page":"909–928","title":"Tropical formulae for summation over a part of SL(2,Z)","department":[{"_id":"TaHa"}]},{"publication":"Journal of the London Mathematical Society","date_created":"2018-12-11T11:44:06Z","oa_version":"Published Version","citation":{"ama":"Ganev IV. The wonderful compactification for quantum groups. <i>Journal of the London Mathematical Society</i>. 2019;99(3):778-806. doi:<a href=\"https://doi.org/10.1112/jlms.12193\">10.1112/jlms.12193</a>","mla":"Ganev, Iordan V. “The Wonderful Compactification for Quantum Groups.” <i>Journal of the London Mathematical Society</i>, vol. 99, no. 3, Wiley, 2019, pp. 778–806, doi:<a href=\"https://doi.org/10.1112/jlms.12193\">10.1112/jlms.12193</a>.","apa":"Ganev, I. V. (2019). The wonderful compactification for quantum groups. <i>Journal of the London Mathematical Society</i>. Wiley. <a href=\"https://doi.org/10.1112/jlms.12193\">https://doi.org/10.1112/jlms.12193</a>","ieee":"I. V. Ganev, “The wonderful compactification for quantum groups,” <i>Journal of the London Mathematical Society</i>, vol. 99, no. 3. Wiley, pp. 778–806, 2019.","short":"I.V. Ganev, Journal of the London Mathematical Society 99 (2019) 778–806.","ista":"Ganev IV. 2019. The wonderful compactification for quantum groups. Journal of the London Mathematical Society. 99(3), 778–806.","chicago":"Ganev, Iordan V. “The Wonderful Compactification for Quantum Groups.” <i>Journal of the London Mathematical Society</i>. Wiley, 2019. <a href=\"https://doi.org/10.1112/jlms.12193\">https://doi.org/10.1112/jlms.12193</a>."},"type":"journal_article","quality_controlled":"1","month":"06","status":"public","intvolume":"        99","date_published":"2019-06-01T00:00:00Z","doi":"10.1112/jlms.12193","isi":1,"day":"01","external_id":{"isi":["000470025900008"]},"oa":1,"year":"2019","issue":"3","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"scopus_import":"1","volume":99,"has_accepted_license":"1","date_updated":"2023-09-19T10:13:08Z","file":[{"file_size":431754,"date_created":"2020-01-07T13:31:53Z","file_id":"7238","relation":"main_file","content_type":"application/pdf","access_level":"open_access","creator":"kschuh","checksum":"1be56239b2cd740a0e9a084f773c22f6","file_name":"2019_Wiley_Ganev.pdf","date_updated":"2020-07-14T12:46:35Z"}],"article_processing_charge":"Yes (via OA deal)","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","abstract":[{"text":"In this paper, we introduce a quantum version of the wonderful compactification of a group as a certain noncommutative projective scheme. Our approach stems from the fact that the wonderful compactification encodes the asymptotics of matrix coefficients, and from its realization as a GIT quotient of the Vinberg semigroup. In order to define the wonderful compactification for a quantum group, we adopt a generalized formalism of Proj categories in the spirit of Artin and Zhang. Key to our construction is a quantum version of the Vinberg semigroup, which we define as a q-deformation of a certain Rees algebra, compatible with a standard Poisson structure. Furthermore, we discuss quantum analogues of the stratification of the wonderful compactification by orbits for a certain group action, and provide explicit computations in the case of SL2.","lang":"eng"}],"language":[{"iso":"eng"}],"author":[{"last_name":"Ganev","id":"447491B8-F248-11E8-B48F-1D18A9856A87","full_name":"Ganev, Iordan V","first_name":"Iordan V"}],"file_date_updated":"2020-07-14T12:46:35Z","ddc":["510"],"publication_status":"published","publist_id":"8052","publisher":"Wiley","_id":"5","department":[{"_id":"TaHa"}],"title":"The wonderful compactification for quantum groups","page":"778-806"},{"author":[{"full_name":"Amberg, Nicole","id":"4CD6AAC6-F248-11E8-B48F-1D18A9856A87","last_name":"Amberg","first_name":"Nicole","orcid":"0000-0002-3183-8207"},{"full_name":"Laukoter, Susanne","id":"2D6B7A9A-F248-11E8-B48F-1D18A9856A87","last_name":"Laukoter","first_name":"Susanne","orcid":"0000-0002-7903-3010"},{"orcid":"0000-0003-2279-1061","full_name":"Hippenmeyer, Simon","last_name":"Hippenmeyer","id":"37B36620-F248-11E8-B48F-1D18A9856A87","first_name":"Simon"}],"language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"The cerebral cortex is composed of a large variety of distinct cell-types including projection neurons, interneurons and glial cells which emerge from distinct neural stem cell (NSC) lineages. The vast majority of cortical projection neurons and certain classes of glial cells are generated by radial glial progenitor cells (RGPs) in a highly orchestrated manner. Recent studies employing single cell analysis and clonal lineage tracing suggest that NSC and RGP lineage progression are regulated in a profound deterministic manner. In this review we focus on recent advances based mainly on correlative phenotypic data emerging from functional genetic studies in mice. We establish hypotheses to test in future research and outline a conceptual framework how epigenetic cues modulate the generation of cell-type diversity during cortical development. This article is protected by copyright. All rights reserved."}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","article_processing_charge":"Yes (via OA deal)","file":[{"date_updated":"2020-07-14T12:45:45Z","file_name":"2019_Wiley_Amberg.pdf","checksum":"db027721a95d36f5de36aadcd0bdf7e6","date_created":"2020-01-07T13:35:52Z","file_size":889709,"creator":"kschuh","access_level":"open_access","content_type":"application/pdf","relation":"main_file","file_id":"7239"}],"date_updated":"2023-09-11T13:40:26Z","has_accepted_license":"1","volume":149,"issue":"1","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"scopus_import":"1","year":"2019","title":"Epigenetic cues modulating the generation of cell type diversity in the cerebral cortex","page":"12-26","project":[{"_id":"25D92700-B435-11E9-9278-68D0E5697425","name":"Mapping Cell-Type Specificity of the Genomic Imprintome in the Brain","grant_number":"LS13-002"},{"grant_number":"RGP0053/2014","name":"Quantitative Structure-Function Analysis of Cerebral Cortex Assembly at Clonal Level","_id":"25D7962E-B435-11E9-9278-68D0E5697425"},{"name":"Molecular Mechanisms of Cerebral Cortex Development","call_identifier":"FP7","_id":"25D61E48-B435-11E9-9278-68D0E5697425","grant_number":"618444"},{"grant_number":"725780","name":"Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development","call_identifier":"H2020","_id":"260018B0-B435-11E9-9278-68D0E5697425"}],"department":[{"_id":"SiHi"}],"ec_funded":1,"_id":"27","publisher":"Wiley","article_type":"review","publication_status":"published","file_date_updated":"2020-07-14T12:45:45Z","ddc":["570"],"month":"04","acknowledgement":" This work was supported by IST Austria institutional funds; NÖ Forschung und Bildung \r\nn[f+b]   (C13-002)   to   SH;   a   program   grant   from   the   Human   Frontiers   Science   Program (RGP0053/2014)  to SH;  the  People  Programme  (Marie  Curie  Actions)  of  the  European  Union’s Seventh Framework Programme (FP7/2007-2013) under REA grant agreement No 618444 to SH, and the  European  Research  Council  (ERC)  under  the  European  Union’s  Horizon  2020  research  and innovation programme (grant agreement No 725780 LinPro)to SH.\r\n","quality_controlled":"1","type":"journal_article","oa_version":"Published Version","citation":{"short":"N. Amberg, S. Laukoter, S. Hippenmeyer, Journal of Neurochemistry 149 (2019) 12–26.","ieee":"N. Amberg, S. Laukoter, and S. Hippenmeyer, “Epigenetic cues modulating the generation of cell type diversity in the cerebral cortex,” <i>Journal of Neurochemistry</i>, vol. 149, no. 1. Wiley, pp. 12–26, 2019.","chicago":"Amberg, Nicole, Susanne Laukoter, and Simon Hippenmeyer. “Epigenetic Cues Modulating the Generation of Cell Type Diversity in the Cerebral Cortex.” <i>Journal of Neurochemistry</i>. Wiley, 2019. <a href=\"https://doi.org/10.1111/jnc.14601\">https://doi.org/10.1111/jnc.14601</a>.","ista":"Amberg N, Laukoter S, Hippenmeyer S. 2019. Epigenetic cues modulating the generation of cell type diversity in the cerebral cortex. Journal of Neurochemistry. 149(1), 12–26.","ama":"Amberg N, Laukoter S, Hippenmeyer S. Epigenetic cues modulating the generation of cell type diversity in the cerebral cortex. <i>Journal of Neurochemistry</i>. 2019;149(1):12-26. doi:<a href=\"https://doi.org/10.1111/jnc.14601\">10.1111/jnc.14601</a>","apa":"Amberg, N., Laukoter, S., &#38; Hippenmeyer, S. (2019). Epigenetic cues modulating the generation of cell type diversity in the cerebral cortex. <i>Journal of Neurochemistry</i>. Wiley. <a href=\"https://doi.org/10.1111/jnc.14601\">https://doi.org/10.1111/jnc.14601</a>","mla":"Amberg, Nicole, et al. “Epigenetic Cues Modulating the Generation of Cell Type Diversity in the Cerebral Cortex.” <i>Journal of Neurochemistry</i>, vol. 149, no. 1, Wiley, 2019, pp. 12–26, doi:<a href=\"https://doi.org/10.1111/jnc.14601\">10.1111/jnc.14601</a>."},"date_created":"2018-12-11T11:44:14Z","publication":"Journal of Neurochemistry","oa":1,"external_id":{"isi":["000462680200002"]},"day":"01","isi":1,"date_published":"2019-04-01T00:00:00Z","doi":"10.1111/jnc.14601","intvolume":"       149","status":"public"},{"_id":"301","publisher":"Elsevier","article_type":"original","publication_status":"published","page":"995-1012","title":"A Feynman–Kac formula for stochastic Dirichlet problems","department":[{"_id":"JaMa"}],"volume":129,"scopus_import":"1","issue":"3","year":"2019","author":[{"first_name":"Mate","last_name":"Gerencser","full_name":"Gerencser, Mate","id":"44ECEDF2-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Gyöngy","full_name":"Gyöngy, István","first_name":"István"}],"language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"A representation formula for solutions of stochastic partial differential equations with Dirichlet boundary conditions is proved. The scope of our setting is wide enough to cover the general situation when the backward characteristics that appear in the usual formulation are not even defined in the Itô sense."}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","article_processing_charge":"No","date_updated":"2023-08-24T14:20:49Z","isi":1,"doi":"10.1016/j.spa.2018.04.003","date_published":"2019-03-01T00:00:00Z","intvolume":"       129","status":"public","oa":1,"external_id":{"arxiv":["1611.04177"],"isi":["000458945300012"]},"day":"01","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1611.04177"}],"type":"journal_article","citation":{"ieee":"M. Gerencser and I. Gyöngy, “A Feynman–Kac formula for stochastic Dirichlet problems,” <i>Stochastic Processes and their Applications</i>, vol. 129, no. 3. Elsevier, pp. 995–1012, 2019.","short":"M. Gerencser, I. Gyöngy, Stochastic Processes and Their Applications 129 (2019) 995–1012.","chicago":"Gerencser, Mate, and István Gyöngy. “A Feynman–Kac Formula for Stochastic Dirichlet Problems.” <i>Stochastic Processes and Their Applications</i>. Elsevier, 2019. <a href=\"https://doi.org/10.1016/j.spa.2018.04.003\">https://doi.org/10.1016/j.spa.2018.04.003</a>.","ista":"Gerencser M, Gyöngy I. 2019. A Feynman–Kac formula for stochastic Dirichlet problems. Stochastic Processes and their Applications. 129(3), 995–1012.","ama":"Gerencser M, Gyöngy I. A Feynman–Kac formula for stochastic Dirichlet problems. <i>Stochastic Processes and their Applications</i>. 2019;129(3):995-1012. doi:<a href=\"https://doi.org/10.1016/j.spa.2018.04.003\">10.1016/j.spa.2018.04.003</a>","mla":"Gerencser, Mate, and István Gyöngy. “A Feynman–Kac Formula for Stochastic Dirichlet Problems.” <i>Stochastic Processes and Their Applications</i>, vol. 129, no. 3, Elsevier, 2019, pp. 995–1012, doi:<a href=\"https://doi.org/10.1016/j.spa.2018.04.003\">10.1016/j.spa.2018.04.003</a>.","apa":"Gerencser, M., &#38; Gyöngy, I. (2019). A Feynman–Kac formula for stochastic Dirichlet problems. <i>Stochastic Processes and Their Applications</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.spa.2018.04.003\">https://doi.org/10.1016/j.spa.2018.04.003</a>"},"oa_version":"Preprint","date_created":"2018-12-11T11:45:42Z","publication":"Stochastic Processes and their Applications","month":"03","arxiv":1,"quality_controlled":"1"},{"acknowledgement":"MG thanks the support of the LMS Postdoctoral Mobility Grant.\r\n\r\n","quality_controlled":"1","month":"04","date_created":"2018-12-11T11:45:48Z","oa_version":"Published Version","citation":{"ama":"Gerencser M, Hairer M. Singular SPDEs in domains with boundaries. <i>Probability Theory and Related Fields</i>. 2019;173(3-4):697–758. doi:<a href=\"https://doi.org/10.1007/s00440-018-0841-1\">10.1007/s00440-018-0841-1</a>","apa":"Gerencser, M., &#38; Hairer, M. (2019). Singular SPDEs in domains with boundaries. <i>Probability Theory and Related Fields</i>. Springer. <a href=\"https://doi.org/10.1007/s00440-018-0841-1\">https://doi.org/10.1007/s00440-018-0841-1</a>","mla":"Gerencser, Mate, and Martin Hairer. “Singular SPDEs in Domains with Boundaries.” <i>Probability Theory and Related Fields</i>, vol. 173, no. 3–4, Springer, 2019, pp. 697–758, doi:<a href=\"https://doi.org/10.1007/s00440-018-0841-1\">10.1007/s00440-018-0841-1</a>.","ieee":"M. Gerencser and M. Hairer, “Singular SPDEs in domains with boundaries,” <i>Probability Theory and Related Fields</i>, vol. 173, no. 3–4. Springer, pp. 697–758, 2019.","short":"M. Gerencser, M. Hairer, Probability Theory and Related Fields 173 (2019) 697–758.","chicago":"Gerencser, Mate, and Martin Hairer. “Singular SPDEs in Domains with Boundaries.” <i>Probability Theory and Related Fields</i>. Springer, 2019. <a href=\"https://doi.org/10.1007/s00440-018-0841-1\">https://doi.org/10.1007/s00440-018-0841-1</a>.","ista":"Gerencser M, Hairer M. 2019. Singular SPDEs in domains with boundaries. Probability Theory and Related Fields. 173(3–4), 697–758."},"publication":"Probability Theory and Related Fields","type":"journal_article","oa":1,"day":"01","external_id":{"isi":["000463613800001"]},"status":"public","isi":1,"intvolume":"       173","date_published":"2019-04-01T00:00:00Z","doi":"10.1007/s00440-018-0841-1","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","abstract":[{"lang":"eng","text":"We study spaces of modelled distributions with singular behaviour near the boundary of a domain that, in the context of the theory of regularity structures, allow one to give robust solution theories for singular stochastic PDEs with boundary conditions. The calculus of modelled distributions established in Hairer (Invent Math 198(2):269–504, 2014. https://doi.org/10.1007/s00222-014-0505-4) is extended to this setting. We formulate and solve fixed point problems in these spaces with a class of kernels that is sufficiently large to cover in particular the Dirichlet and Neumann heat kernels. These results are then used to provide solution theories for the KPZ equation with Dirichlet and Neumann boundary conditions and for the 2D generalised parabolic Anderson model with Dirichlet boundary conditions. In the case of the KPZ equation with Neumann boundary conditions, we show that, depending on the class of mollifiers one considers, a “boundary renormalisation” takes place. In other words, there are situations in which a certain boundary condition is applied to an approximation to the KPZ equation, but the limiting process is the Hopf–Cole solution to the KPZ equation with a different boundary condition."}],"date_updated":"2023-08-24T14:38:32Z","file":[{"date_updated":"2020-07-14T12:46:03Z","file_name":"2018_ProbTheory_Gerencser.pdf","checksum":"288d16ef7291242f485a9660979486e3","date_created":"2018-12-17T16:25:24Z","file_size":893182,"creator":"dernst","content_type":"application/pdf","access_level":"open_access","relation":"main_file","file_id":"5722"}],"article_processing_charge":"Yes (via OA deal)","author":[{"last_name":"Gerencser","full_name":"Gerencser, Mate","id":"44ECEDF2-F248-11E8-B48F-1D18A9856A87","first_name":"Mate"},{"first_name":"Martin","full_name":"Hairer, Martin","last_name":"Hairer"}],"publication_identifier":{"issn":["01788051"],"eissn":["14322064"]},"language":[{"iso":"eng"}],"year":"2019","issue":"3-4","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"scopus_import":"1","has_accepted_license":"1","volume":173,"department":[{"_id":"JaMa"}],"page":"697–758","title":"Singular SPDEs in domains with boundaries","project":[{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"publication_status":"published","file_date_updated":"2020-07-14T12:46:03Z","ddc":["510"],"_id":"319","article_type":"original","publist_id":"7546","publisher":"Springer"},{"month":"01","arxiv":1,"acknowledgement":"The authors would like to thank the Lorentz Center in Leiden for hosting the Women in Numbers Europe 2 workshop and providing a productive and enjoyable environment for our initial work on this project. We are grateful to the organizers of WIN-E2, Irene Bouw, Rachel Newton and Ekin Ozman, for making this conference and this collaboration possible. We\r\nthank Irene Bouw and Christophe Ritzenhaler for helpful discussions. Ionica acknowledges support from the Thomas Jefferson Fund of the Embassy of France in the United States and the FACE Foundation. Most of Kılıçer’s work was carried out during her stay in Universiteit Leiden and Carl von Ossietzky Universität Oldenburg. Massierer was supported by the Australian Research Council (DP150101689). Vincent is supported by the National Science Foundation under Grant No. DMS-1802323 and by the Thomas Jefferson Fund of the Embassy of France in the United States and the FACE Foundation. ","quality_controlled":"1","type":"journal_article","date_created":"2022-03-18T12:09:48Z","citation":{"ista":"Ionica S, Kılıçer P, Lauter K, Lorenzo García E, Manzateanu M-A, Massierer M, Vincent C. 2019. Modular invariants for genus 3 hyperelliptic curves. Research in Number Theory. 5, 9.","chicago":"Ionica, Sorina, Pınar Kılıçer, Kristin Lauter, Elisa Lorenzo García, Maria-Adelina Manzateanu, Maike Massierer, and Christelle Vincent. “Modular Invariants for Genus 3 Hyperelliptic Curves.” <i>Research in Number Theory</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1007/s40993-018-0146-6\">https://doi.org/10.1007/s40993-018-0146-6</a>.","short":"S. Ionica, P. Kılıçer, K. Lauter, E. Lorenzo García, M.-A. Manzateanu, M. Massierer, C. Vincent, Research in Number Theory 5 (2019).","ieee":"S. Ionica <i>et al.</i>, “Modular invariants for genus 3 hyperelliptic curves,” <i>Research in Number Theory</i>, vol. 5. Springer Nature, 2019.","mla":"Ionica, Sorina, et al. “Modular Invariants for Genus 3 Hyperelliptic Curves.” <i>Research in Number Theory</i>, vol. 5, 9, Springer Nature, 2019, doi:<a href=\"https://doi.org/10.1007/s40993-018-0146-6\">10.1007/s40993-018-0146-6</a>.","apa":"Ionica, S., Kılıçer, P., Lauter, K., Lorenzo García, E., Manzateanu, M.-A., Massierer, M., &#38; Vincent, C. (2019). Modular invariants for genus 3 hyperelliptic curves. <i>Research in Number Theory</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s40993-018-0146-6\">https://doi.org/10.1007/s40993-018-0146-6</a>","ama":"Ionica S, Kılıçer P, Lauter K, et al. Modular invariants for genus 3 hyperelliptic curves. <i>Research in Number Theory</i>. 2019;5. doi:<a href=\"https://doi.org/10.1007/s40993-018-0146-6\">10.1007/s40993-018-0146-6</a>"},"oa_version":"Preprint","publication":"Research in Number Theory","oa":1,"main_file_link":[{"url":"https://arxiv.org/abs/1807.08986","open_access":"1"}],"day":"02","external_id":{"arxiv":["1807.08986"]},"keyword":["Algebra and Number Theory"],"article_number":"9","intvolume":"         5","doi":"10.1007/s40993-018-0146-6","date_published":"2019-01-02T00:00:00Z","status":"public","author":[{"first_name":"Sorina","full_name":"Ionica, Sorina","last_name":"Ionica"},{"last_name":"Kılıçer","full_name":"Kılıçer, Pınar","first_name":"Pınar"},{"last_name":"Lauter","full_name":"Lauter, Kristin","first_name":"Kristin"},{"first_name":"Elisa","last_name":"Lorenzo García","full_name":"Lorenzo García, Elisa"},{"last_name":"Manzateanu","id":"be8d652e-a908-11ec-82a4-e2867729459c","full_name":"Manzateanu, Maria-Adelina","first_name":"Maria-Adelina"},{"first_name":"Maike","last_name":"Massierer","full_name":"Massierer, Maike"},{"last_name":"Vincent","full_name":"Vincent, Christelle","first_name":"Christelle"}],"publication_identifier":{"issn":["2522-0160"],"eissn":["2363-9555"]},"language":[{"iso":"eng"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","abstract":[{"lang":"eng","text":"In this article we prove an analogue of a theorem of Lachaud, Ritzenthaler, and Zykin, which allows us to connect invariants of binary octics to Siegel modular forms of genus 3. We use this connection to show that certain modular functions, when restricted to the hyperelliptic locus, assume values whose denominators are products of powers of primes of bad reduction for the associated hyperelliptic curves. We illustrate our theorem with explicit computations. This work is motivated by the study of the values of these modular functions at CM points of the Siegel upper half-space, which, if their denominators are known, can be used to effectively compute models of (hyperelliptic, in our case) curves with CM."}],"date_updated":"2023-09-05T15:39:31Z","article_processing_charge":"No","volume":5,"year":"2019","scopus_import":"1","title":"Modular invariants for genus 3 hyperelliptic curves","department":[{"_id":"TiBr"}],"_id":"10874","article_type":"original","publisher":"Springer Nature","publication_status":"published"},{"conference":{"start_date":"2019-04-15","location":"Montreal, Canada","name":"ARCH: International Workshop on Applied Verification on Continuous and Hybrid Systems","end_date":"2019-04-15"},"publication_identifier":{"issn":["2398-7340"]},"author":[{"last_name":"Frehse","full_name":"Frehse, Goran","first_name":"Goran"},{"first_name":"Alessandro","full_name":"Abate, Alessandro","last_name":"Abate"},{"first_name":"Dieky","full_name":"Adzkiya, Dieky","last_name":"Adzkiya"},{"first_name":"Anna","last_name":"Becchi","full_name":"Becchi, Anna"},{"full_name":"Bu, Lei","last_name":"Bu","first_name":"Lei"},{"first_name":"Alessandro","full_name":"Cimatti, Alessandro","last_name":"Cimatti"},{"full_name":"Giacobbe, Mirco","last_name":"Giacobbe","id":"3444EA5E-F248-11E8-B48F-1D18A9856A87","first_name":"Mirco","orcid":"0000-0001-8180-0904"},{"full_name":"Griggio, Alberto","last_name":"Griggio","first_name":"Alberto"},{"full_name":"Mover, Sergio","last_name":"Mover","first_name":"Sergio"},{"full_name":"Mufid, Muhammad Syifa'ul","last_name":"Mufid","first_name":"Muhammad Syifa'ul"},{"full_name":"Riouak, Idriss","last_name":"Riouak","first_name":"Idriss"},{"first_name":"Stefano","full_name":"Tonetta, Stefano","last_name":"Tonetta"},{"last_name":"Zaffanella","full_name":"Zaffanella, Enea","first_name":"Enea"}],"language":[{"iso":"eng"}],"abstract":[{"text":"This report presents the results of a friendly competition for formal verification of continuous and hybrid systems with piecewise constant dynamics. The friendly competition took place as part of the workshop Applied Verification for Continuous and Hybrid Systems (ARCH) in 2019. In this third edition, six tools have been applied to solve five different benchmark problems in the category for piecewise constant dynamics: BACH, Lyse, Hy- COMP, PHAVer/SX, PHAVerLite, and VeriSiMPL. Compared to last year, a new tool has participated (HyCOMP) and PHAVerLite has replaced PHAVer-lite. The result is a snap- shot of the current landscape of tools and the types of benchmarks they are particularly suited for. Due to the diversity of problems, we are not ranking tools, yet the presented results probably provide the most complete assessment of tools for the safety verification of continuous and hybrid systems with piecewise constant dynamics up to this date.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","file":[{"success":1,"file_name":"2019_EPiCs_Frehse.pdf","date_updated":"2022-05-17T06:55:49Z","checksum":"4b92e333db7b4e2349501a804dfede69","content_type":"application/pdf","access_level":"open_access","creator":"dernst","file_id":"11391","relation":"main_file","file_size":346415,"date_created":"2022-05-17T06:55:49Z"}],"date_updated":"2022-05-17T07:09:47Z","has_accepted_license":"1","volume":61,"scopus_import":"1","year":"2019","page":"1-13","title":"ARCH-COMP19 Category Report: Hybrid systems with piecewise constant dynamics","alternative_title":["EPiC Series in Computing"],"department":[{"_id":"ToHe"}],"_id":"10877","publisher":"EasyChair","publication_status":"published","ddc":["000"],"file_date_updated":"2022-05-17T06:55:49Z","month":"05","acknowledgement":"The authors gratefully acknowledge \fnancial support by the European Commission project\r\nUnCoVerCPS under grant number 643921. Lei Bu is supported by the National Natural Science\r\nFoundation of China (No.61572249).","quality_controlled":"1","type":"conference","oa_version":"Published Version","citation":{"apa":"Frehse, G., Abate, A., Adzkiya, D., Becchi, A., Bu, L., Cimatti, A., … Zaffanella, E. (2019). ARCH-COMP19 Category Report: Hybrid systems with piecewise constant dynamics. In G. Frehse &#38; M. Althoff (Eds.), <i>ARCH19. 6th International Workshop on Applied Verification of Continuous and Hybrid Systems</i> (Vol. 61, pp. 1–13). Montreal, Canada: EasyChair. <a href=\"https://doi.org/10.29007/rjwn\">https://doi.org/10.29007/rjwn</a>","mla":"Frehse, Goran, et al. “ARCH-COMP19 Category Report: Hybrid Systems with Piecewise Constant Dynamics.” <i>ARCH19. 6th International Workshop on Applied Verification of Continuous and Hybrid Systems</i>, edited by Goran Frehse and Matthias Althoff, vol. 61, EasyChair, 2019, pp. 1–13, doi:<a href=\"https://doi.org/10.29007/rjwn\">10.29007/rjwn</a>.","ama":"Frehse G, Abate A, Adzkiya D, et al. ARCH-COMP19 Category Report: Hybrid systems with piecewise constant dynamics. In: Frehse G, Althoff M, eds. <i>ARCH19. 6th International Workshop on Applied Verification of Continuous and Hybrid Systems</i>. Vol 61. EasyChair; 2019:1-13. doi:<a href=\"https://doi.org/10.29007/rjwn\">10.29007/rjwn</a>","chicago":"Frehse, Goran, Alessandro Abate, Dieky Adzkiya, Anna Becchi, Lei Bu, Alessandro Cimatti, Mirco Giacobbe, et al. “ARCH-COMP19 Category Report: Hybrid Systems with Piecewise Constant Dynamics.” In <i>ARCH19. 6th International Workshop on Applied Verification of Continuous and Hybrid Systems</i>, edited by Goran Frehse and Matthias Althoff, 61:1–13. EasyChair, 2019. <a href=\"https://doi.org/10.29007/rjwn\">https://doi.org/10.29007/rjwn</a>.","ista":"Frehse G, Abate A, Adzkiya D, Becchi A, Bu L, Cimatti A, Giacobbe M, Griggio A, Mover S, Mufid MS, Riouak I, Tonetta S, Zaffanella E. 2019. ARCH-COMP19 Category Report: Hybrid systems with piecewise constant dynamics. ARCH19. 6th International Workshop on Applied Verification of Continuous and Hybrid Systems. ARCH: International Workshop on Applied Verification on Continuous and Hybrid Systems, EPiC Series in Computing, vol. 61, 1–13.","ieee":"G. Frehse <i>et al.</i>, “ARCH-COMP19 Category Report: Hybrid systems with piecewise constant dynamics,” in <i>ARCH19. 6th International Workshop on Applied Verification of Continuous and Hybrid Systems</i>, Montreal, Canada, 2019, vol. 61, pp. 1–13.","short":"G. Frehse, A. Abate, D. Adzkiya, A. Becchi, L. Bu, A. Cimatti, M. Giacobbe, A. Griggio, S. Mover, M.S. Mufid, I. Riouak, S. Tonetta, E. Zaffanella, in:, G. Frehse, M. Althoff (Eds.), ARCH19. 6th International Workshop on Applied Verification of Continuous and Hybrid Systems, EasyChair, 2019, pp. 1–13."},"date_created":"2022-03-18T12:29:23Z","publication":"ARCH19. 6th International Workshop on Applied Verification of Continuous and Hybrid Systems","editor":[{"first_name":"Goran","last_name":"Frehse","full_name":"Frehse, Goran"},{"first_name":"Matthias","full_name":"Althoff, Matthias","last_name":"Althoff"}],"oa":1,"day":"25","doi":"10.29007/rjwn","date_published":"2019-05-25T00:00:00Z","intvolume":"        61","status":"public"},{"language":[{"iso":"eng"}],"author":[{"last_name":"Flandoli","full_name":"Flandoli, Franco","first_name":"Franco"},{"last_name":"Priola","full_name":"Priola, Enrico","first_name":"Enrico"},{"id":"47491882-F248-11E8-B48F-1D18A9856A87","full_name":"Zanco, Giovanni A","last_name":"Zanco","first_name":"Giovanni A"}],"publication_identifier":{"issn":["1553-5231"]},"date_updated":"2023-09-08T11:34:45Z","article_processing_charge":"No","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","abstract":[{"lang":"eng","text":"Starting from a microscopic model for a system of neurons evolving in time which individually follow a stochastic integrate-and-fire type model, we study a mean-field limit of the system. Our model is described by a system of SDEs with discontinuous coefficients for the action potential of each neuron and takes into account the (random) spatial configuration of neurons allowing the interaction to depend on it. In the limit as the number of particles tends to infinity, we obtain a nonlinear Fokker-Planck type PDE in two variables, with derivatives only with respect to one variable and discontinuous coefficients. We also study strong well-posedness of the system of SDEs and prove the existence and uniqueness of a weak measure-valued solution to the PDE, obtained as the limit of the laws of the empirical measures for the system of particles."}],"volume":39,"year":"2019","scopus_import":"1","issue":"6","project":[{"_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","name":"Taming Complexity in Partial Differential Systems","grant_number":"F6504"}],"title":"A mean-field model with discontinuous coefficients for neurons with spatial interaction","page":"3037-3067","department":[{"_id":"JaMa"}],"article_type":"original","publisher":"American Institute of Mathematical Sciences","_id":"10878","publication_status":"published","arxiv":1,"month":"06","quality_controlled":"1","acknowledgement":"The second author has been partially supported by INdAM through the GNAMPA Research\r\nProject (2017) “Sistemi stocastici singolari: buona posizione e problemi di controllo”. The third\r\nauthor was partly funded by the Austrian Science Fund (FWF) project F 65.","type":"journal_article","publication":"Discrete and Continuous Dynamical Systems","date_created":"2022-03-18T12:33:34Z","citation":{"ama":"Flandoli F, Priola E, Zanco GA. A mean-field model with discontinuous coefficients for neurons with spatial interaction. <i>Discrete and Continuous Dynamical Systems</i>. 2019;39(6):3037-3067. doi:<a href=\"https://doi.org/10.3934/dcds.2019126\">10.3934/dcds.2019126</a>","apa":"Flandoli, F., Priola, E., &#38; Zanco, G. A. (2019). A mean-field model with discontinuous coefficients for neurons with spatial interaction. <i>Discrete and Continuous Dynamical Systems</i>. American Institute of Mathematical Sciences. <a href=\"https://doi.org/10.3934/dcds.2019126\">https://doi.org/10.3934/dcds.2019126</a>","mla":"Flandoli, Franco, et al. “A Mean-Field Model with Discontinuous Coefficients for Neurons with Spatial Interaction.” <i>Discrete and Continuous Dynamical Systems</i>, vol. 39, no. 6, American Institute of Mathematical Sciences, 2019, pp. 3037–67, doi:<a href=\"https://doi.org/10.3934/dcds.2019126\">10.3934/dcds.2019126</a>.","short":"F. Flandoli, E. Priola, G.A. Zanco, Discrete and Continuous Dynamical Systems 39 (2019) 3037–3067.","ieee":"F. Flandoli, E. Priola, and G. A. Zanco, “A mean-field model with discontinuous coefficients for neurons with spatial interaction,” <i>Discrete and Continuous Dynamical Systems</i>, vol. 39, no. 6. American Institute of Mathematical Sciences, pp. 3037–3067, 2019.","ista":"Flandoli F, Priola E, Zanco GA. 2019. A mean-field model with discontinuous coefficients for neurons with spatial interaction. Discrete and Continuous Dynamical Systems. 39(6), 3037–3067.","chicago":"Flandoli, Franco, Enrico Priola, and Giovanni A Zanco. “A Mean-Field Model with Discontinuous Coefficients for Neurons with Spatial Interaction.” <i>Discrete and Continuous Dynamical Systems</i>. American Institute of Mathematical Sciences, 2019. <a href=\"https://doi.org/10.3934/dcds.2019126\">https://doi.org/10.3934/dcds.2019126</a>."},"oa_version":"Preprint","day":"01","main_file_link":[{"url":"https://arxiv.org/abs/1708.04156","open_access":"1"}],"external_id":{"arxiv":["1708.04156"],"isi":["000459954800003"]},"oa":1,"keyword":["Applied Mathematics","Discrete Mathematics and Combinatorics","Analysis"],"intvolume":"        39","date_published":"2019-06-01T00:00:00Z","doi":"10.3934/dcds.2019126","isi":1,"status":"public"},{"_id":"10879","publisher":"European Mathematical Society Publishing House","article_type":"original","publication_status":"published","title":"Perturbations of continuum random Schrödinger operators with applications to Anderson orthogonality and the spectral shift function","page":"921-965","department":[{"_id":"LaEr"}],"volume":9,"scopus_import":"1","issue":"3","year":"2019","author":[{"first_name":"Adrian M","id":"317CB464-F248-11E8-B48F-1D18A9856A87","full_name":"Dietlein, Adrian M","last_name":"Dietlein"},{"first_name":"Martin","last_name":"Gebert","full_name":"Gebert, Martin"},{"full_name":"Müller, Peter","last_name":"Müller","first_name":"Peter"}],"publication_identifier":{"issn":["1664-039X"]},"language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"We study effects of a bounded and compactly supported perturbation on multidimensional continuum random Schrödinger operators in the region of complete localisation. Our main emphasis is on Anderson orthogonality for random Schrödinger operators. Among others, we prove that Anderson orthogonality does occur for Fermi energies in the region of complete localisation with a non-zero probability. This partially confirms recent non-rigorous findings [V. Khemani et al., Nature Phys. 11 (2015), 560–565]. The spectral shift function plays an important role in our analysis of Anderson orthogonality. We identify it with the index of the corresponding pair of spectral projections and explore the consequences thereof. All our results rely on the main technical estimate of this paper which guarantees separate exponential decay of the disorder-averaged Schatten p-norm of χa(f(H)−f(Hτ))χb in a and b. Here, Hτ is a perturbation of the random Schrödinger operator H, χa is the multiplication operator corresponding to the indicator function of a unit cube centred about a∈Rd, and f is in a suitable class of functions of bounded variation with distributional derivative supported in the region of complete localisation for H."}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","article_processing_charge":"No","date_updated":"2023-09-08T11:35:31Z","isi":1,"doi":"10.4171/jst/267","date_published":"2019-03-01T00:00:00Z","intvolume":"         9","status":"public","oa":1,"external_id":{"isi":["000484709400006"],"arxiv":["1701.02956"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1701.02956"}],"day":"01","keyword":["Random Schrödinger operators","spectral shift function","Anderson orthogonality"],"type":"journal_article","citation":{"ama":"Dietlein AM, Gebert M, Müller P. Perturbations of continuum random Schrödinger operators with applications to Anderson orthogonality and the spectral shift function. <i>Journal of Spectral Theory</i>. 2019;9(3):921-965. doi:<a href=\"https://doi.org/10.4171/jst/267\">10.4171/jst/267</a>","apa":"Dietlein, A. M., Gebert, M., &#38; Müller, P. (2019). Perturbations of continuum random Schrödinger operators with applications to Anderson orthogonality and the spectral shift function. <i>Journal of Spectral Theory</i>. European Mathematical Society Publishing House. <a href=\"https://doi.org/10.4171/jst/267\">https://doi.org/10.4171/jst/267</a>","mla":"Dietlein, Adrian M., et al. “Perturbations of Continuum Random Schrödinger Operators with Applications to Anderson Orthogonality and the Spectral Shift Function.” <i>Journal of Spectral Theory</i>, vol. 9, no. 3, European Mathematical Society Publishing House, 2019, pp. 921–65, doi:<a href=\"https://doi.org/10.4171/jst/267\">10.4171/jst/267</a>.","short":"A.M. Dietlein, M. Gebert, P. Müller, Journal of Spectral Theory 9 (2019) 921–965.","ieee":"A. M. Dietlein, M. Gebert, and P. Müller, “Perturbations of continuum random Schrödinger operators with applications to Anderson orthogonality and the spectral shift function,” <i>Journal of Spectral Theory</i>, vol. 9, no. 3. European Mathematical Society Publishing House, pp. 921–965, 2019.","ista":"Dietlein AM, Gebert M, Müller P. 2019. Perturbations of continuum random Schrödinger operators with applications to Anderson orthogonality and the spectral shift function. Journal of Spectral Theory. 9(3), 921–965.","chicago":"Dietlein, Adrian M, Martin Gebert, and Peter Müller. “Perturbations of Continuum Random Schrödinger Operators with Applications to Anderson Orthogonality and the Spectral Shift Function.” <i>Journal of Spectral Theory</i>. European Mathematical Society Publishing House, 2019. <a href=\"https://doi.org/10.4171/jst/267\">https://doi.org/10.4171/jst/267</a>."},"oa_version":"Preprint","date_created":"2022-03-18T12:36:42Z","publication":"Journal of Spectral Theory","month":"03","arxiv":1,"acknowledgement":"M.G. was supported by the DFG under grant GE 2871/1-1.","quality_controlled":"1"},{"publication_status":"published","ec_funded":1,"_id":"11222","publisher":"Austrian Pharmacological Society","department":[{"_id":"PeJo"}],"title":"Functional analysis of the docked vesicle pool in hippocampal mossy fiber terminals by electron microscopy","project":[{"_id":"25B7EB9E-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Biophysics and circuit function of a giant cortical glumatergic synapse","grant_number":"692692"},{"grant_number":"708497","call_identifier":"H2020","name":"Presynaptic calcium channels distribution and impact on coupling at the hippocampal mossy fiber synapse","_id":"25BAF7B2-B435-11E9-9278-68D0E5697425"},{"name":"Zellkommunikation in Gesundheit und Krankheit","call_identifier":"FWF","_id":"25C3DBB6-B435-11E9-9278-68D0E5697425","grant_number":"W01205"},{"grant_number":"Z00312","call_identifier":"FWF","name":"The Wittgenstein Prize","_id":"25C5A090-B435-11E9-9278-68D0E5697425"}],"issue":"Suppl. 1","year":"2019","volume":7,"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","article_processing_charge":"No","date_updated":"2024-03-25T23:30:04Z","publication_identifier":{"issn":["2309-8503"]},"conference":{"end_date":"2019-09-27","location":"Innsbruck, Austria","start_date":"2019-09-25","name":"ANA: Austrian Neuroscience Association ; APHAR: Austrian Pharmacological Society"},"author":[{"id":"3F8ABDDA-F248-11E8-B48F-1D18A9856A87","last_name":"Kim","full_name":"Kim, Olena","first_name":"Olena"},{"id":"4305C450-F248-11E8-B48F-1D18A9856A87","full_name":"Borges Merjane, Carolina","last_name":"Borges Merjane","first_name":"Carolina","orcid":"0000-0003-0005-401X"},{"id":"353C1B58-F248-11E8-B48F-1D18A9856A87","last_name":"Jonas","full_name":"Jonas, Peter M","first_name":"Peter M","orcid":"0000-0001-5001-4804"}],"language":[{"iso":"eng"}],"related_material":{"record":[{"status":"public","relation":"dissertation_contains","id":"11196"}]},"status":"public","article_number":"A3.27","doi":"10.25006/ia.7.s1-a3.27","date_published":"2019-09-11T00:00:00Z","intvolume":"         7","keyword":["hippocampus","mossy fibers","readily releasable pool","electron microscopy"],"oa":1,"day":"11","main_file_link":[{"url":"https://www.intrinsicactivity.org/2019/7/S1/A3.27/","open_access":"1"}],"citation":{"short":"O. Kim, C. Borges Merjane, P.M. Jonas, in:, Intrinsic Activity, Austrian Pharmacological Society, 2019.","ieee":"O. Kim, C. Borges Merjane, and P. M. Jonas, “Functional analysis of the docked vesicle pool in hippocampal mossy fiber terminals by electron microscopy,” in <i>Intrinsic Activity</i>, Innsbruck, Austria, 2019, vol. 7, no. Suppl. 1.","chicago":"Kim, Olena, Carolina Borges Merjane, and Peter M Jonas. “Functional Analysis of the Docked Vesicle Pool in Hippocampal Mossy Fiber Terminals by Electron Microscopy.” In <i>Intrinsic Activity</i>, Vol. 7. Austrian Pharmacological Society, 2019. <a href=\"https://doi.org/10.25006/ia.7.s1-a3.27\">https://doi.org/10.25006/ia.7.s1-a3.27</a>.","ista":"Kim O, Borges Merjane C, Jonas PM. 2019. Functional analysis of the docked vesicle pool in hippocampal mossy fiber terminals by electron microscopy. Intrinsic Activity. ANA: Austrian Neuroscience Association ; APHAR: Austrian Pharmacological Society vol. 7, A3.27.","ama":"Kim O, Borges Merjane C, Jonas PM. Functional analysis of the docked vesicle pool in hippocampal mossy fiber terminals by electron microscopy. In: <i>Intrinsic Activity</i>. Vol 7. Austrian Pharmacological Society; 2019. doi:<a href=\"https://doi.org/10.25006/ia.7.s1-a3.27\">10.25006/ia.7.s1-a3.27</a>","apa":"Kim, O., Borges Merjane, C., &#38; Jonas, P. M. (2019). Functional analysis of the docked vesicle pool in hippocampal mossy fiber terminals by electron microscopy. In <i>Intrinsic Activity</i> (Vol. 7). Innsbruck, Austria: Austrian Pharmacological Society. <a href=\"https://doi.org/10.25006/ia.7.s1-a3.27\">https://doi.org/10.25006/ia.7.s1-a3.27</a>","mla":"Kim, Olena, et al. “Functional Analysis of the Docked Vesicle Pool in Hippocampal Mossy Fiber Terminals by Electron Microscopy.” <i>Intrinsic Activity</i>, vol. 7, no. Suppl. 1, A3.27, Austrian Pharmacological Society, 2019, doi:<a href=\"https://doi.org/10.25006/ia.7.s1-a3.27\">10.25006/ia.7.s1-a3.27</a>."},"oa_version":"Published Version","date_created":"2022-04-20T15:06:05Z","publication":"Intrinsic Activity","type":"conference_abstract","acknowledgement":"This work was supported by the ERC and EU Horizon 2020 (ERC 692692; MSC-IF 708497) and FWF Z 312-B27 Wittgenstein award; W 1205-B09).","quality_controlled":"1","month":"09"},{"date_updated":"2021-01-12T06:49:09Z","file":[{"date_created":"2018-12-12T10:17:13Z","file_size":671125,"creator":"system","content_type":"application/pdf","access_level":"open_access","relation":"main_file","file_id":"5266","date_updated":"2020-07-14T12:44:39Z","file_name":"IST-2016-712-v1+1_s10959-016-0724-2.pdf","checksum":"47686d58ec21c164540f1a980ff2163f"}],"article_processing_charge":"Yes (via OA deal)","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Two generalizations of Itô formula to infinite-dimensional spaces are given.\r\nThe first one, in Hilbert spaces, extends the classical one by taking advantage of\r\ncancellations when they occur in examples and it is applied to the case of a group\r\ngenerator. The second one, based on the previous one and a limit procedure, is an Itô\r\nformula in a special class of Banach spaces having a product structure with the noise\r\nin a Hilbert component; again the key point is the extension due to a cancellation. This\r\nextension to Banach spaces and in particular the specific cancellation are motivated\r\nby path-dependent Itô calculus."}],"language":[{"iso":"eng"}],"author":[{"first_name":"Franco","last_name":"Flandoli","full_name":"Flandoli, Franco"},{"first_name":"Francesco","last_name":"Russo","full_name":"Russo, Francesco"},{"last_name":"Zanco","full_name":"Zanco, Giovanni A","id":"47491882-F248-11E8-B48F-1D18A9856A87","first_name":"Giovanni A"}],"year":"2018","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"scopus_import":1,"issue":"2","volume":31,"has_accepted_license":"1","department":[{"_id":"JaMa"}],"project":[{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"page":"789-826","title":"Infinite-dimensional calculus under weak spatial regularity of the processes","publication_status":"published","file_date_updated":"2020-07-14T12:44:39Z","ddc":["519"],"publist_id":"6119","publisher":"Springer","_id":"1215","quality_controlled":"1","acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria). The second named author benefited partially from the support of the “FMJH Program Gaspard Monge in Optimization and Operations Research” (Project 2014-1607H). He is also grateful for the invitation to the Department of Mathematics of the University of Pisa. The third named author is grateful for the invitation to ENSTA.","month":"06","pubrep_id":"712","publication":"Journal of Theoretical Probability","date_created":"2018-12-11T11:50:45Z","citation":{"ama":"Flandoli F, Russo F, Zanco GA. Infinite-dimensional calculus under weak spatial regularity of the processes. <i>Journal of Theoretical Probability</i>. 2018;31(2):789-826. doi:<a href=\"https://doi.org/10.1007/s10959-016-0724-2\">10.1007/s10959-016-0724-2</a>","mla":"Flandoli, Franco, et al. “Infinite-Dimensional Calculus under Weak Spatial Regularity of the Processes.” <i>Journal of Theoretical Probability</i>, vol. 31, no. 2, Springer, 2018, pp. 789–826, doi:<a href=\"https://doi.org/10.1007/s10959-016-0724-2\">10.1007/s10959-016-0724-2</a>.","apa":"Flandoli, F., Russo, F., &#38; Zanco, G. A. (2018). Infinite-dimensional calculus under weak spatial regularity of the processes. <i>Journal of Theoretical Probability</i>. Springer. <a href=\"https://doi.org/10.1007/s10959-016-0724-2\">https://doi.org/10.1007/s10959-016-0724-2</a>","ieee":"F. Flandoli, F. Russo, and G. A. Zanco, “Infinite-dimensional calculus under weak spatial regularity of the processes,” <i>Journal of Theoretical Probability</i>, vol. 31, no. 2. Springer, pp. 789–826, 2018.","short":"F. Flandoli, F. Russo, G.A. Zanco, Journal of Theoretical Probability 31 (2018) 789–826.","ista":"Flandoli F, Russo F, Zanco GA. 2018. Infinite-dimensional calculus under weak spatial regularity of the processes. Journal of Theoretical Probability. 31(2), 789–826.","chicago":"Flandoli, Franco, Francesco Russo, and Giovanni A Zanco. “Infinite-Dimensional Calculus under Weak Spatial Regularity of the Processes.” <i>Journal of Theoretical Probability</i>. Springer, 2018. <a href=\"https://doi.org/10.1007/s10959-016-0724-2\">https://doi.org/10.1007/s10959-016-0724-2</a>."},"oa_version":"Published Version","type":"journal_article","day":"01","oa":1,"status":"public","intvolume":"        31","date_published":"2018-06-01T00:00:00Z","doi":"10.1007/s10959-016-0724-2"},{"publisher":"ACM","publist_id":"8043","ec_funded":1,"_id":"13","file_date_updated":"2020-07-14T12:44:43Z","ddc":["004"],"publication_status":"published","project":[{"grant_number":"715767","_id":"24F9549A-B435-11E9-9278-68D0E5697425","name":"MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and Modeling","call_identifier":"H2020"}],"title":"Metamolds: Computational design of silicone molds","department":[{"_id":"BeBi"}],"volume":37,"has_accepted_license":"1","issue":"4","scopus_import":"1","year":"2018","language":[{"iso":"eng"}],"author":[{"first_name":"Thomas","full_name":"Alderighi, Thomas","last_name":"Alderighi"},{"first_name":"Luigi","full_name":"Malomo, Luigi","last_name":"Malomo"},{"first_name":"Daniela","full_name":"Giorgi, Daniela","last_name":"Giorgi"},{"last_name":"Pietroni","full_name":"Pietroni, Nico","first_name":"Nico"},{"orcid":"0000-0001-6511-9385","first_name":"Bernd","full_name":"Bickel, Bernd","last_name":"Bickel","id":"49876194-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Cignoni, Paolo","last_name":"Cignoni","first_name":"Paolo"}],"article_processing_charge":"No","file":[{"file_name":"IST-2018-1038-v1+1_metamolds_authorversion.pdf","date_updated":"2020-07-14T12:44:43Z","checksum":"61d46273dca4de626accef1d17a0aaad","content_type":"application/pdf","access_level":"open_access","creator":"system","file_id":"5374","relation":"main_file","file_size":91939066,"date_created":"2018-12-12T10:18:52Z"}],"date_updated":"2023-09-13T08:56:07Z","abstract":[{"text":"We propose a new method for fabricating digital objects through reusable silicone molds. Molds are generated by casting liquid silicone into custom 3D printed containers called metamolds. Metamolds automatically define the cuts that are needed to extract the cast object from the silicone mold. The shape of metamolds is designed through a novel segmentation technique, which takes into account both geometric and topological constraints involved in the process of mold casting. Our technique is simple, does not require changing the shape or topology of the input objects, and only requires off-the- shelf materials and technologies. We successfully tested our method on a set of challenging examples with complex shapes and rich geometric detail. © 2018 Association for Computing Machinery.","lang":"eng"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","date_published":"2018-08-04T00:00:00Z","doi":"10.1145/3197517.3201381","intvolume":"        37","isi":1,"article_number":"136","status":"public","related_material":{"link":[{"description":"News on IST Homepage","relation":"press_release","url":"https://ist.ac.at/en/news/metamolds-molding-a-mold/"}]},"external_id":{"isi":["000448185000097"]},"day":"04","oa":1,"type":"journal_article","publication":"ACM Trans. Graph.","oa_version":"Submitted Version","citation":{"ieee":"T. Alderighi, L. Malomo, D. Giorgi, N. Pietroni, B. Bickel, and P. Cignoni, “Metamolds: Computational design of silicone molds,” <i>ACM Trans. Graph.</i>, vol. 37, no. 4. ACM, 2018.","short":"T. Alderighi, L. Malomo, D. Giorgi, N. Pietroni, B. Bickel, P. Cignoni, ACM Trans. Graph. 37 (2018).","chicago":"Alderighi, Thomas, Luigi Malomo, Daniela Giorgi, Nico Pietroni, Bernd Bickel, and Paolo Cignoni. “Metamolds: Computational Design of Silicone Molds.” <i>ACM Trans. Graph.</i> ACM, 2018. <a href=\"https://doi.org/10.1145/3197517.3201381\">https://doi.org/10.1145/3197517.3201381</a>.","ista":"Alderighi T, Malomo L, Giorgi D, Pietroni N, Bickel B, Cignoni P. 2018. Metamolds: Computational design of silicone molds. ACM Trans. Graph. 37(4), 136.","ama":"Alderighi T, Malomo L, Giorgi D, Pietroni N, Bickel B, Cignoni P. Metamolds: Computational design of silicone molds. <i>ACM Trans Graph</i>. 2018;37(4). doi:<a href=\"https://doi.org/10.1145/3197517.3201381\">10.1145/3197517.3201381</a>","mla":"Alderighi, Thomas, et al. “Metamolds: Computational Design of Silicone Molds.” <i>ACM Trans. Graph.</i>, vol. 37, no. 4, 136, ACM, 2018, doi:<a href=\"https://doi.org/10.1145/3197517.3201381\">10.1145/3197517.3201381</a>.","apa":"Alderighi, T., Malomo, L., Giorgi, D., Pietroni, N., Bickel, B., &#38; Cignoni, P. (2018). Metamolds: Computational design of silicone molds. <i>ACM Trans. Graph.</i> ACM. <a href=\"https://doi.org/10.1145/3197517.3201381\">https://doi.org/10.1145/3197517.3201381</a>"},"date_created":"2018-12-11T11:44:09Z","month":"08","pubrep_id":"1038","quality_controlled":"1"},{"main_file_link":[{"url":"https://doi.org/10.5281/zenodo.1480665","open_access":"1"}],"day":"23","oa":1,"title":"Social network plasticity decreases disease transmission in a eusocial insect","department":[{"_id":"SyCr"}],"publisher":"Zenodo","doi":"10.5281/ZENODO.1322669","date_published":"2018-10-23T00:00:00Z","_id":"13055","status":"public","ddc":["570"],"related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"7"}]},"author":[{"full_name":"Stroeymeyt, Nathalie","last_name":"Stroeymeyt","first_name":"Nathalie"},{"first_name":"Anna V","last_name":"Grasse","id":"406F989C-F248-11E8-B48F-1D18A9856A87","full_name":"Grasse, Anna V"},{"first_name":"Alessandro","full_name":"Crespi, Alessandro","last_name":"Crespi"},{"last_name":"Mersch","full_name":"Mersch, Danielle","first_name":"Danielle"},{"orcid":"0000-0002-2193-3868","full_name":"Cremer, Sylvia","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","last_name":"Cremer","first_name":"Sylvia"},{"first_name":"Laurent","full_name":"Keller, Laurent","last_name":"Keller"}],"month":"10","article_processing_charge":"No","date_updated":"2023-10-17T11:50:04Z","abstract":[{"lang":"eng","text":"Dataset for manuscript 'Social network plasticity decreases disease transmission in a eusocial insect'\r\nCompared to previous versions: - raw image files added\r\n                                                     - correction of URLs within README.txt file\r\n"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"research_data_reference","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"year":"2018","citation":{"chicago":"Stroeymeyt, Nathalie, Anna V Grasse, Alessandro Crespi, Danielle Mersch, Sylvia Cremer, and Laurent Keller. “Social Network Plasticity Decreases Disease Transmission in a Eusocial Insect.” Zenodo, 2018. <a href=\"https://doi.org/10.5281/ZENODO.1322669\">https://doi.org/10.5281/ZENODO.1322669</a>.","ista":"Stroeymeyt N, Grasse AV, Crespi A, Mersch D, Cremer S, Keller L. 2018. Social network plasticity decreases disease transmission in a eusocial insect, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.1322669\">10.5281/ZENODO.1322669</a>.","ieee":"N. Stroeymeyt, A. V. Grasse, A. Crespi, D. Mersch, S. Cremer, and L. Keller, “Social network plasticity decreases disease transmission in a eusocial insect.” Zenodo, 2018.","short":"N. Stroeymeyt, A.V. Grasse, A. Crespi, D. Mersch, S. Cremer, L. Keller, (2018).","apa":"Stroeymeyt, N., Grasse, A. V., Crespi, A., Mersch, D., Cremer, S., &#38; Keller, L. (2018). Social network plasticity decreases disease transmission in a eusocial insect. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.1322669\">https://doi.org/10.5281/ZENODO.1322669</a>","mla":"Stroeymeyt, Nathalie, et al. <i>Social Network Plasticity Decreases Disease Transmission in a Eusocial Insect</i>. Zenodo, 2018, doi:<a href=\"https://doi.org/10.5281/ZENODO.1322669\">10.5281/ZENODO.1322669</a>.","ama":"Stroeymeyt N, Grasse AV, Crespi A, Mersch D, Cremer S, Keller L. Social network plasticity decreases disease transmission in a eusocial insect. 2018. doi:<a href=\"https://doi.org/10.5281/ZENODO.1322669\">10.5281/ZENODO.1322669</a>"},"oa_version":"Published Version","date_created":"2023-05-23T13:24:51Z"},{"ddc":["570"],"related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"7181"}]},"status":"public","_id":"13059","date_published":"2018-12-07T00:00:00Z","doi":"10.5281/ZENODO.2025846","publisher":"Zenodo","department":[{"_id":"FyKo"}],"oa":1,"title":"Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method","main_file_link":[{"url":"https://doi.org/10.5281/zenodo.3271452","open_access":"1"}],"day":"07","citation":{"ieee":"E. Garriga <i>et al.</i>, “Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method.” Zenodo, 2018.","short":"E. Garriga, P. di Tommaso, C. Magis, I. Erb, L. Mansouri, A. Baltzis, H. Laayouni, F. Kondrashov, E. Floden, C. Notredame, (2018).","ista":"Garriga E, di Tommaso P, Magis C, Erb I, Mansouri L, Baltzis A, Laayouni H, Kondrashov F, Floden E, Notredame C. 2018. Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.2025846\">10.5281/ZENODO.2025846</a>.","chicago":"Garriga, Edgar, Paolo di Tommaso, Cedrik Magis, Ionas Erb, Leila Mansouri, Athanasios Baltzis, Hafid Laayouni, Fyodor Kondrashov, Evan Floden, and Cedric Notredame. “Fast and Accurate Large Multiple Sequence Alignments with a Root-to-Leaf Regressive Method.” Zenodo, 2018. <a href=\"https://doi.org/10.5281/ZENODO.2025846\">https://doi.org/10.5281/ZENODO.2025846</a>.","ama":"Garriga E, di Tommaso P, Magis C, et al. Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method. 2018. doi:<a href=\"https://doi.org/10.5281/ZENODO.2025846\">10.5281/ZENODO.2025846</a>","mla":"Garriga, Edgar, et al. <i>Fast and Accurate Large Multiple Sequence Alignments with a Root-to-Leaf Regressive Method</i>. Zenodo, 2018, doi:<a href=\"https://doi.org/10.5281/ZENODO.2025846\">10.5281/ZENODO.2025846</a>.","apa":"Garriga, E., di Tommaso, P., Magis, C., Erb, I., Mansouri, L., Baltzis, A., … Notredame, C. (2018). Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.2025846\">https://doi.org/10.5281/ZENODO.2025846</a>"},"oa_version":"Published Version","date_created":"2023-05-23T16:08:20Z","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"year":"2018","type":"research_data_reference","abstract":[{"text":"This dataset contains a GitHub repository containing all the data, analysis, Nextflow workflows and Jupyter notebooks to replicate the manuscript titled \"Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method\".\r\nIt also contains the Multiple Sequence Alignments (MSAs) generated and well as the main figures and tables from the manuscript.\r\nThe repository is also available at GitHub (https://github.com/cbcrg/dpa-analysis) release `v1.2`.\r\nFor details on how to use the regressive alignment algorithm, see the T-Coffee software suite (https://github.com/cbcrg/tcoffee).","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","date_updated":"2023-09-06T14:32:51Z","author":[{"full_name":"Garriga, Edgar","last_name":"Garriga","first_name":"Edgar"},{"first_name":"Paolo","last_name":"di Tommaso","full_name":"di Tommaso, Paolo"},{"last_name":"Magis","full_name":"Magis, Cedrik","first_name":"Cedrik"},{"full_name":"Erb, Ionas","last_name":"Erb","first_name":"Ionas"},{"last_name":"Mansouri","full_name":"Mansouri, Leila","first_name":"Leila"},{"full_name":"Baltzis, Athanasios","last_name":"Baltzis","first_name":"Athanasios"},{"first_name":"Hafid","full_name":"Laayouni, Hafid","last_name":"Laayouni"},{"id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","last_name":"Kondrashov","full_name":"Kondrashov, Fyodor","first_name":"Fyodor","orcid":"0000-0001-8243-4694"},{"first_name":"Evan","last_name":"Floden","full_name":"Floden, Evan"},{"first_name":"Cedric","full_name":"Notredame, Cedric","last_name":"Notredame"}],"month":"12"},{"month":"08","quality_controlled":"1","acknowledgement":"We are grateful to Lu Dabing (Soochow University, Suzhou, China) for providing Schistosoma japonicum samples, to Ariana Macon (IST Austria) and Georgette Stovall (JLU Giessen) for technical assistance, to IT support at IST Austria for providing optimal environment to bioinformatic analyses, and to the Vicoso lab for comments on the manuscript.","type":"journal_article","publication":"eLife","citation":{"apa":"Picard, M. A. L., Cosseau, C., Ferré, S., Quack, T., Grevelding, C., Couté, Y., &#38; Vicoso, B. (2018). Evolution of gene dosage on the Z-chromosome of schistosome parasites. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/eLife.35684\">https://doi.org/10.7554/eLife.35684</a>","mla":"Picard, Marion A. L., et al. “Evolution of Gene Dosage on the Z-Chromosome of Schistosome Parasites.” <i>ELife</i>, vol. 7, e35684, eLife Sciences Publications, 2018, doi:<a href=\"https://doi.org/10.7554/eLife.35684\">10.7554/eLife.35684</a>.","ama":"Picard MAL, Cosseau C, Ferré S, et al. Evolution of gene dosage on the Z-chromosome of schistosome parasites. <i>eLife</i>. 2018;7. doi:<a href=\"https://doi.org/10.7554/eLife.35684\">10.7554/eLife.35684</a>","chicago":"Picard, Marion A L, Celine Cosseau, Sabrina Ferré, Thomas Quack, Christoph Grevelding, Yohann Couté, and Beatriz Vicoso. “Evolution of Gene Dosage on the Z-Chromosome of Schistosome Parasites.” <i>ELife</i>. eLife Sciences Publications, 2018. <a href=\"https://doi.org/10.7554/eLife.35684\">https://doi.org/10.7554/eLife.35684</a>.","ista":"Picard MAL, Cosseau C, Ferré S, Quack T, Grevelding C, Couté Y, Vicoso B. 2018. Evolution of gene dosage on the Z-chromosome of schistosome parasites. eLife. 7, e35684.","ieee":"M. A. L. Picard <i>et al.</i>, “Evolution of gene dosage on the Z-chromosome of schistosome parasites,” <i>eLife</i>, vol. 7. eLife Sciences Publications, 2018.","short":"M.A.L. Picard, C. Cosseau, S. Ferré, T. Quack, C. Grevelding, Y. Couté, B. Vicoso, ELife 7 (2018)."},"oa_version":"Published Version","date_created":"2018-12-11T11:44:47Z","external_id":{"isi":["000441388200001"]},"day":"13","oa":1,"doi":"10.7554/eLife.35684","date_published":"2018-08-13T00:00:00Z","intvolume":"         7","isi":1,"article_number":"e35684","status":"public","related_material":{"record":[{"id":"5586","relation":"popular_science","status":"public"}]},"language":[{"iso":"eng"}],"author":[{"orcid":"0000-0002-8101-2518","first_name":"Marion A","id":"2C921A7A-F248-11E8-B48F-1D18A9856A87","full_name":"Picard, Marion A","last_name":"Picard"},{"first_name":"Celine","last_name":"Cosseau","full_name":"Cosseau, Celine"},{"first_name":"Sabrina","full_name":"Ferré, Sabrina","last_name":"Ferré"},{"full_name":"Quack, Thomas","last_name":"Quack","first_name":"Thomas"},{"last_name":"Grevelding","full_name":"Grevelding, Christoph","first_name":"Christoph"},{"first_name":"Yohann","last_name":"Couté","full_name":"Couté, Yohann"},{"full_name":"Vicoso, Beatriz","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","last_name":"Vicoso","first_name":"Beatriz","orcid":"0000-0002-4579-8306"}],"article_processing_charge":"No","file":[{"file_name":"2018_eLife_Picard.pdf","date_updated":"2020-07-14T12:44:43Z","checksum":"d6331d4385b1fffd6b47b45d5949d841","access_level":"open_access","content_type":"application/pdf","creator":"dernst","file_id":"5695","relation":"main_file","file_size":3158125,"date_created":"2018-12-17T11:55:05Z"}],"date_updated":"2024-02-21T13:45:12Z","abstract":[{"lang":"eng","text":"XY systems usually show chromosome-wide compensation of X-linked genes, while in many ZW systems, compensation is restricted to a minority of dosage-sensitive genes. Why such differences arose is still unclear. Here, we combine comparative genomics, transcriptomics and proteomics to obtain a complete overview of the evolution of gene dosage on the Z-chromosome of Schistosoma parasites. We compare the Z-chromosome gene content of African (Schistosoma mansoni and S. haematobium) and Asian (S. japonicum) schistosomes and describe lineage-specific evolutionary strata. We use these to assess gene expression evolution following sex-linkage. The resulting patterns suggest a reduction in expression of Z-linked genes in females, combined with upregulation of the Z in both sexes, in line with the first step of Ohno’s classic model of dosage compensation evolution. Quantitative proteomics suggest that post-transcriptional mechanisms do not play a major role in balancing the expression of Z-linked genes. "}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","volume":7,"has_accepted_license":"1","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"scopus_import":"1","year":"2018","project":[{"name":"Sex chromosome evolution under male- and female- heterogamety","call_identifier":"FWF","_id":"250ED89C-B435-11E9-9278-68D0E5697425","grant_number":"P28842-B22"}],"title":"Evolution of gene dosage on the Z-chromosome of schistosome parasites","department":[{"_id":"BeVi"}],"publisher":"eLife Sciences Publications","article_type":"original","publist_id":"7792","_id":"131","ddc":["570"],"publication_status":"published","file_date_updated":"2020-07-14T12:44:43Z"},{"date_created":"2018-12-11T11:44:48Z","oa_version":"Published Version","citation":{"apa":"Sznurkowska, M., Hannezo, E. B., Azzarelli, R., Rulands, S., Nestorowa, S., Hindley, C., … Simons, B. (2018). Defining lineage potential and fate behavior of precursors during pancreas development. <i>Developmental Cell</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.devcel.2018.06.028\">https://doi.org/10.1016/j.devcel.2018.06.028</a>","mla":"Sznurkowska, Magdalena, et al. “Defining Lineage Potential and Fate Behavior of Precursors during Pancreas Development.” <i>Developmental Cell</i>, vol. 46, no. 3, Cell Press, 2018, pp. 360–75, doi:<a href=\"https://doi.org/10.1016/j.devcel.2018.06.028\">10.1016/j.devcel.2018.06.028</a>.","ama":"Sznurkowska M, Hannezo EB, Azzarelli R, et al. Defining lineage potential and fate behavior of precursors during pancreas development. <i>Developmental Cell</i>. 2018;46(3):360-375. doi:<a href=\"https://doi.org/10.1016/j.devcel.2018.06.028\">10.1016/j.devcel.2018.06.028</a>","ista":"Sznurkowska M, Hannezo EB, Azzarelli R, Rulands S, Nestorowa S, Hindley C, Nichols J, Göttgens B, Huch M, Philpott A, Simons B. 2018. Defining lineage potential and fate behavior of precursors during pancreas development. Developmental Cell. 46(3), 360–375.","chicago":"Sznurkowska, Magdalena, Edouard B Hannezo, Roberta Azzarelli, Steffen Rulands, Sonia Nestorowa, Christopher Hindley, Jennifer Nichols, et al. “Defining Lineage Potential and Fate Behavior of Precursors during Pancreas Development.” <i>Developmental Cell</i>. Cell Press, 2018. <a href=\"https://doi.org/10.1016/j.devcel.2018.06.028\">https://doi.org/10.1016/j.devcel.2018.06.028</a>.","ieee":"M. Sznurkowska <i>et al.</i>, “Defining lineage potential and fate behavior of precursors during pancreas development,” <i>Developmental Cell</i>, vol. 46, no. 3. Cell Press, pp. 360–375, 2018.","short":"M. Sznurkowska, E.B. Hannezo, R. Azzarelli, S. Rulands, S. Nestorowa, C. Hindley, J. Nichols, B. Göttgens, M. Huch, A. Philpott, B. Simons, Developmental Cell 46 (2018) 360–375."},"publication":"Developmental Cell","type":"journal_article","acknowledgement":"E.H. is funded by a Junior Research Fellowship from Trinity College, Cam-bridge, a Sir Henry Wellcome Fellowship from the Wellcome Trust, and theBettencourt-Schueller Young Researcher Prize for support.","quality_controlled":"1","month":"08","status":"public","isi":1,"intvolume":"        46","doi":"10.1016/j.devcel.2018.06.028","date_published":"2018-08-06T00:00:00Z","oa":1,"day":"06","external_id":{"isi":["000441327300012"]},"year":"2018","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"scopus_import":"1","issue":"3","has_accepted_license":"1","volume":46,"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","abstract":[{"text":"Pancreas development involves a coordinated process in which an early phase of cell segregation is followed by a longer phase of lineage restriction, expansion, and tissue remodeling. By combining clonal tracing and whole-mount reconstruction with proliferation kinetics and single-cell transcriptional profiling, we define the functional basis of pancreas morphogenesis. We show that the large-scale organization of mouse pancreas can be traced to the activity of self-renewing precursors positioned at the termini of growing ducts, which act collectively to drive serial rounds of stochastic ductal bifurcation balanced by termination. During this phase of branching morphogenesis, multipotent precursors become progressively fate-restricted, giving rise to self-renewing acinar-committed precursors that are conveyed with growing ducts, as well as ductal progenitors that expand the trailing ducts and give rise to delaminating endocrine cells. These findings define quantitatively how the functional behavior and lineage progression of precursor pools determine the large-scale patterning of pancreatic sub-compartments.","lang":"eng"}],"file":[{"checksum":"78d2062b9e3c3b90fe71545aeb6d2f65","date_updated":"2020-07-14T12:44:43Z","file_name":"2018_DevelopmentalCell_Sznurkowska.pdf","date_created":"2018-12-17T10:49:49Z","file_size":8948384,"relation":"main_file","file_id":"5694","creator":"dernst","content_type":"application/pdf","access_level":"open_access"}],"date_updated":"2023-09-11T12:52:41Z","article_processing_charge":"No","author":[{"first_name":"Magdalena","full_name":"Sznurkowska, Magdalena","last_name":"Sznurkowska"},{"orcid":"0000-0001-6005-1561","last_name":"Hannezo","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","full_name":"Hannezo, Edouard B","first_name":"Edouard B"},{"first_name":"Roberta","full_name":"Azzarelli, Roberta","last_name":"Azzarelli"},{"first_name":"Steffen","full_name":"Rulands, Steffen","last_name":"Rulands"},{"full_name":"Nestorowa, Sonia","last_name":"Nestorowa","first_name":"Sonia"},{"first_name":"Christopher","full_name":"Hindley, Christopher","last_name":"Hindley"},{"first_name":"Jennifer","last_name":"Nichols","full_name":"Nichols, Jennifer"},{"first_name":"Berthold","full_name":"Göttgens, Berthold","last_name":"Göttgens"},{"last_name":"Huch","full_name":"Huch, Meritxell","first_name":"Meritxell"},{"last_name":"Philpott","full_name":"Philpott, Anna","first_name":"Anna"},{"last_name":"Simons","full_name":"Simons, Benjamin","first_name":"Benjamin"}],"language":[{"iso":"eng"}],"ddc":["570"],"publication_status":"published","file_date_updated":"2020-07-14T12:44:43Z","_id":"132","article_type":"original","publist_id":"7791","publisher":"Cell Press","department":[{"_id":"EdHa"}],"title":"Defining lineage potential and fate behavior of precursors during pancreas development","page":"360 - 375"}]