[{"date_published":"2020-06-01T00:00:00Z","title":"Neo-gibberellin signaling: Guiding the next generation of the green revolution","quality_controlled":"1","date_created":"2020-04-26T22:00:46Z","year":"2020","publication":"Trends in Plant Science","volume":25,"article_processing_charge":"No","_id":"7686","external_id":{"isi":["000533518400003"],"pmid":["32407691"]},"scopus_import":"1","type":"journal_article","oa_version":"None","date_updated":"2023-08-21T06:16:01Z","department":[{"_id":"JiFr"}],"citation":{"mla":"Xue, Huidan, et al. “Neo-Gibberellin Signaling: Guiding the next Generation of the Green Revolution.” Trends in Plant Science, vol. 25, no. 6, Elsevier, 2020, pp. 520–22, doi:10.1016/j.tplants.2020.04.001.","apa":"Xue, H., Zhang, Y., & Xiao, G. (2020). Neo-gibberellin signaling: Guiding the next generation of the green revolution. Trends in Plant Science. Elsevier. https://doi.org/10.1016/j.tplants.2020.04.001","ista":"Xue H, Zhang Y, Xiao G. 2020. Neo-gibberellin signaling: Guiding the next generation of the green revolution. Trends in Plant Science. 25(6), 520–522.","chicago":"Xue, Huidan, Yuzhou Zhang, and Guanghui Xiao. “Neo-Gibberellin Signaling: Guiding the next Generation of the Green Revolution.” Trends in Plant Science. Elsevier, 2020. https://doi.org/10.1016/j.tplants.2020.04.001.","ama":"Xue H, Zhang Y, Xiao G. Neo-gibberellin signaling: Guiding the next generation of the green revolution. Trends in Plant Science. 2020;25(6):520-522. doi:10.1016/j.tplants.2020.04.001","short":"H. Xue, Y. Zhang, G. Xiao, Trends in Plant Science 25 (2020) 520–522.","ieee":"H. Xue, Y. Zhang, and G. Xiao, “Neo-gibberellin signaling: Guiding the next generation of the green revolution,” Trends in Plant Science, vol. 25, no. 6. Elsevier, pp. 520–522, 2020."},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","author":[{"full_name":"Xue, Huidan","first_name":"Huidan","last_name":"Xue"},{"first_name":"Yuzhou","id":"3B6137F2-F248-11E8-B48F-1D18A9856A87","full_name":"Zhang, Yuzhou","orcid":"0000-0003-2627-6956","last_name":"Zhang"},{"first_name":"Guanghui","full_name":"Xiao, Guanghui","last_name":"Xiao"}],"publisher":"Elsevier","intvolume":" 25","page":"520-522","article_type":"original","language":[{"iso":"eng"}],"status":"public","pmid":1,"publication_identifier":{"issn":["1360-1385"]},"issue":"6","doi":"10.1016/j.tplants.2020.04.001","abstract":[{"lang":"eng","text":"The agricultural green revolution spectacularly enhanced crop yield and lodging resistance with modified DELLA-mediated gibberellin signaling. However, this was achieved at the expense of reduced nitrogen-use efficiency (NUE). Recently, Wu et al. revealed novel gibberellin signaling that provides a blueprint for improving tillering and NUE in Green Revolution varieties (GRVs). "}],"isi":1,"month":"06","publication_status":"published","day":"01"},{"language":[{"iso":"ger"}],"popular_science":"1","intvolume":" 73","article_type":"original","page":"46-59","publisher":"Vereinigung Osterreichischer Bibliothekarinnen und Bibliothekare","publication_status":"published","day":"28","month":"04","license":"https://creativecommons.org/licenses/by/4.0/","issue":"1","abstract":[{"text":"A working group, which was established within the Network of Repository Managers (RepManNet), has dealt with common certifications for repositories. In addition, current requirements of the research funding agencies FWF and EU were also taken into account. The Core Trust Seal was examined in more detail. For this purpose, a questionnaire was sent to those organizations that are already certified with CTS in Austria. The answers were summarized and evaluated anonymously. It is recommended to go for a repository certification. Moreover, the development of a DINI certificate in Austria is strongly suggested.","lang":"eng"},{"text":" Eine Arbeitsgruppe, die im Rahmen des Netzwerks für RepositorienmanagerInnen (RepManNet) entstanden ist, hat sich mit gängigen Zertifizierungen für Repositorien beschäftigt. Weiters wurden aktuelle Vorgaben der Forschungsförderer FWF und EU herangezogen. Das Core Trust Seal wurde genauer betrachtet. Hierfür wurden jenen Organisationen, die in Österreich bereits mit CTS zertifiziert sind, ein Fragebogen übermittelt. Die Antworten wurden anonymisiert zusammengefasst und ausgewertet. Plädiert wird für eine Zertifizierung von Repositorien und die Entwicklung einer DINI-Zertifizierung in Österreich.","lang":"ger"}],"doi":"10.31263/voebm.v73i1.3491","status":"public","publication_identifier":{"issn":["1022-2588"]},"year":"2020","article_processing_charge":"No","volume":73,"publication":"Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare","date_created":"2020-04-28T08:37:38Z","ddc":["020"],"title":"(Core Trust) Seal your repository!","date_published":"2020-04-28T00:00:00Z","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"department":[{"_id":"E-Lib"}],"file":[{"checksum":"fee784f15a489deb7def6ccf8c5bf8c3","relation":"main_file","creator":"dernst","file_name":"2020_VOEB_Ernst.pdf","content_type":"application/pdf","date_updated":"2023-04-03T09:17:25Z","file_size":579291,"access_level":"open_access","file_id":"7970","date_created":"2020-06-17T10:50:13Z"}],"date_updated":"2024-02-27T13:41:03Z","oa_version":"Published Version","oa":1,"author":[{"last_name":"Ernst","orcid":"0000-0002-2354-0195","first_name":"Doris","id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","full_name":"Ernst, Doris"},{"full_name":"Novotny, Gertraud","first_name":"Gertraud","last_name":"Novotny"},{"last_name":"Schönher","full_name":"Schönher, Eva Maria","first_name":"Eva Maria"}],"has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ieee":"D. Ernst, G. Novotny, and E. M. Schönher, “(Core Trust) Seal your repository!,” Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, vol. 73, no. 1. Vereinigung Osterreichischer Bibliothekarinnen und Bibliothekare, pp. 46–59, 2020.","chicago":"Ernst, Doris, Gertraud Novotny, and Eva Maria Schönher. “(Core Trust) Seal your repository!” Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare. Vereinigung Osterreichischer Bibliothekarinnen und Bibliothekare, 2020. https://doi.org/10.31263/voebm.v73i1.3491.","short":"D. Ernst, G. Novotny, E.M. Schönher, Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare 73 (2020) 46–59.","ama":"Ernst D, Novotny G, Schönher EM. (Core Trust) Seal your repository! Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare. 2020;73(1):46-59. doi:10.31263/voebm.v73i1.3491","apa":"Ernst, D., Novotny, G., & Schönher, E. M. (2020). (Core Trust) Seal your repository! Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare. Vereinigung Osterreichischer Bibliothekarinnen und Bibliothekare. https://doi.org/10.31263/voebm.v73i1.3491","mla":"Ernst, Doris, et al. “(Core Trust) Seal your repository!” Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, vol. 73, no. 1, Vereinigung Osterreichischer Bibliothekarinnen und Bibliothekare, 2020, pp. 46–59, doi:10.31263/voebm.v73i1.3491.","ista":"Ernst D, Novotny G, Schönher EM. 2020. (Core Trust) Seal your repository! Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare. 73(1), 46–59."},"type":"journal_article","scopus_import":"1","file_date_updated":"2023-04-03T09:17:25Z","_id":"7687"},{"publisher":"Institute of Science and Technology Austria","tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"date_published":"2020-05-01T00:00:00Z","title":"Supplementary data for \"Zero field splitting of heavy-hole states in quantum dots\"","project":[{"name":"TOPOLOGICALLY PROTECTED AND SCALABLE QUANTUM BITS","grant_number":"862046","_id":"237E5020-32DE-11EA-91FC-C7463DDC885E","call_identifier":"H2020"},{"name":"Towards scalable hut wire quantum devices","grant_number":"P32235","call_identifier":"FWF","_id":"237B3DA4-32DE-11EA-91FC-C7463DDC885E"}],"date_created":"2020-05-01T15:14:46Z","ddc":["530"],"article_processing_charge":"No","year":"2020","contributor":[{"last_name":"Katsaros","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios","contributor_type":"contact_person"}],"_id":"7689","status":"public","doi":"10.15479/AT:ISTA:7689","abstract":[{"text":"These are the supplementary research data to the publication \"Zero field splitting of heavy-hole states in quantum dots\". All matrix files have the same format. Within each column the bias voltage is changed. Each column corresponds to either a different gate voltage or magnetic field. The voltage values are given in mV, the current values in pA. Find a specific description in the included Readme file.\r\n","lang":"eng"}],"file_date_updated":"2020-07-14T12:48:02Z","license":"https://creativecommons.org/publicdomain/zero/1.0/","month":"05","related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"8203"}]},"type":"research_data","ec_funded":1,"oa":1,"author":[{"orcid":"0000-0001-8342-202X","full_name":"Katsaros, Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios","last_name":"Katsaros"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ista":"Katsaros G. 2020. Supplementary data for ‘Zero field splitting of heavy-hole states in quantum dots’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:7689.","apa":"Katsaros, G. (2020). Supplementary data for “Zero field splitting of heavy-hole states in quantum dots.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:7689","mla":"Katsaros, Georgios. Supplementary Data for “Zero Field Splitting of Heavy-Hole States in Quantum Dots.” Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:7689.","ama":"Katsaros G. Supplementary data for “Zero field splitting of heavy-hole states in quantum dots.” 2020. doi:10.15479/AT:ISTA:7689","short":"G. Katsaros, (2020).","chicago":"Katsaros, Georgios. “Supplementary Data for ‘Zero Field Splitting of Heavy-Hole States in Quantum Dots.’” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:7689.","ieee":"G. Katsaros, “Supplementary data for ‘Zero field splitting of heavy-hole states in quantum dots.’” Institute of Science and Technology Austria, 2020."},"has_accepted_license":"1","day":"01","department":[{"_id":"GeKa"}],"file":[{"creator":"gkatsaro","checksum":"d23c0cb9e2d19e14e2f902b88b97c05d","relation":"main_file","file_id":"7786","date_created":"2020-05-01T15:13:28Z","access_level":"open_access","date_updated":"2020-07-14T12:48:02Z","content_type":"application/x-zip-compressed","file_size":5514403,"file_name":"DOI_ZeroFieldSplitting.zip"}],"oa_version":"Published Version","date_updated":"2024-02-21T12:44:02Z"},{"article_type":"original","page":"986-997","intvolume":" 183","language":[{"iso":"eng"}],"publisher":"American Society of Plant Biologists","month":"07","isi":1,"day":"01","publication_status":"published","publication_identifier":{"issn":["0032-0889"],"eissn":["1532-2548"]},"status":"public","pmid":1,"abstract":[{"lang":"eng","text":"The TPLATE complex (TPC) is a key endocytic adaptor protein complex in plants. TPC in Arabidopsis (Arabidopsis thaliana) contains six evolutionarily conserved subunits and two plant-specific subunits, AtEH1/Pan1 and AtEH2/Pan1, although cytoplasmic proteins are not associated with the hexameric subcomplex in the cytoplasm. To investigate the dynamic assembly of the octameric TPC at the plasma membrane (PM), we performed state-of-the-art dual-color live cell imaging at physiological and lowered temperatures. Lowering the temperature slowed down endocytosis, thereby enhancing the temporal resolution of the differential recruitment of endocytic components. Under both normal and lowered temperature conditions, the core TPC subunit TPLATE and the AtEH/Pan1 proteins exhibited simultaneous recruitment at the PM. These results, together with co-localization analysis of different TPC subunits, allow us to conclude that TPC in plant cells is not recruited to the PM sequentially but as an octameric complex."}],"doi":"10.1104/pp.20.00178","issue":"3","date_created":"2020-04-29T15:23:00Z","volume":183,"article_processing_charge":"No","publication":"Plant Physiology","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/2020.02.13.948109"}],"year":"2020","quality_controlled":"1","date_published":"2020-07-01T00:00:00Z","title":"High temporal resolution reveals simultaneous plasma membrane recruitment of TPLATE complex subunits","project":[{"_id":"26538374-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Molecular mechanisms of endocytic cargo recognition in plants","grant_number":"I03630"}],"type":"journal_article","author":[{"last_name":"Wang","full_name":"Wang, J","first_name":"J"},{"last_name":"Mylle","first_name":"E","full_name":"Mylle, E"},{"orcid":"0000-0002-2739-8843","first_name":"Alexander J","full_name":"Johnson, Alexander J","id":"46A62C3A-F248-11E8-B48F-1D18A9856A87","last_name":"Johnson"},{"full_name":"Besbrugge, N","first_name":"N","last_name":"Besbrugge"},{"full_name":"De Jaeger, G","first_name":"G","last_name":"De Jaeger"},{"orcid":"0000-0002-8302-7596","first_name":"Jiří","full_name":"Friml, Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml"},{"last_name":"Pleskot","first_name":"R","full_name":"Pleskot, R"},{"last_name":"van Damme","first_name":"D","full_name":"van Damme, D"}],"oa":1,"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","citation":{"ieee":"J. Wang et al., “High temporal resolution reveals simultaneous plasma membrane recruitment of TPLATE complex subunits,” Plant Physiology, vol. 183, no. 3. American Society of Plant Biologists, pp. 986–997, 2020.","chicago":"Wang, J, E Mylle, Alexander J Johnson, N Besbrugge, G De Jaeger, Jiří Friml, R Pleskot, and D van Damme. “High Temporal Resolution Reveals Simultaneous Plasma Membrane Recruitment of TPLATE Complex Subunits.” Plant Physiology. American Society of Plant Biologists, 2020. https://doi.org/10.1104/pp.20.00178.","ama":"Wang J, Mylle E, Johnson AJ, et al. High temporal resolution reveals simultaneous plasma membrane recruitment of TPLATE complex subunits. Plant Physiology. 2020;183(3):986-997. doi:10.1104/pp.20.00178","short":"J. Wang, E. Mylle, A.J. Johnson, N. Besbrugge, G. De Jaeger, J. Friml, R. Pleskot, D. van Damme, Plant Physiology 183 (2020) 986–997.","mla":"Wang, J., et al. “High Temporal Resolution Reveals Simultaneous Plasma Membrane Recruitment of TPLATE Complex Subunits.” Plant Physiology, vol. 183, no. 3, American Society of Plant Biologists, 2020, pp. 986–97, doi:10.1104/pp.20.00178.","apa":"Wang, J., Mylle, E., Johnson, A. J., Besbrugge, N., De Jaeger, G., Friml, J., … van Damme, D. (2020). High temporal resolution reveals simultaneous plasma membrane recruitment of TPLATE complex subunits. Plant Physiology. American Society of Plant Biologists. https://doi.org/10.1104/pp.20.00178","ista":"Wang J, Mylle E, Johnson AJ, Besbrugge N, De Jaeger G, Friml J, Pleskot R, van Damme D. 2020. High temporal resolution reveals simultaneous plasma membrane recruitment of TPLATE complex subunits. Plant Physiology. 183(3), 986–997."},"department":[{"_id":"JiFr"}],"oa_version":"Preprint","date_updated":"2023-09-05T12:20:02Z","_id":"7695","scopus_import":"1","external_id":{"isi":["000550682000018"],"pmid":["32321842"]}},{"issue":"5","doi":"10.1111/nph.16629","abstract":[{"text":"* Morphogenesis and adaptive tropic growth in plants depend on gradients of the phytohormone auxin, mediated by the membrane‐based PIN‐FORMED (PIN) auxin transporters. PINs localize to a particular side of the plasma membrane (PM) or to the endoplasmic reticulum (ER) to directionally transport auxin and maintain intercellular and intracellular auxin homeostasis, respectively. However, the molecular cues that confer their diverse cellular localizations remain largely unknown.\r\n* In this study, we systematically swapped the domains between ER‐ and PM‐localized PIN proteins, as well as between apical and basal PM‐localized PINs from Arabidopsis thaliana , to shed light on why PIN family members with similar topological structures reside at different membrane compartments within cells.\r\n* Our results show that not only do the N‐ and C‐terminal transmembrane domains (TMDs) and central hydrophilic loop contribute to their differential subcellular localizations and cellular polarity, but that the pairwise‐matched N‐ and C‐terminal TMDs resulting from intramolecular domain–domain coevolution are also crucial for their divergent patterns of localization.\r\n* These findings illustrate the complexity of the evolutionary path of PIN proteins in acquiring their plethora of developmental functions and adaptive growth in plants.","lang":"eng"}],"status":"public","pmid":1,"publication_identifier":{"eissn":["1469-8137"],"issn":["0028-646X"]},"publication_status":"published","day":"01","ec_funded":1,"isi":1,"month":"09","publisher":"Wiley","language":[{"iso":"eng"}],"intvolume":" 227","article_type":"original","page":"1406-1416","external_id":{"pmid":["32350870"],"isi":["000534092400001"]},"file_date_updated":"2020-11-24T12:19:38Z","scopus_import":"1","_id":"7697","date_updated":"2023-09-05T15:46:04Z","oa_version":"Published Version","file":[{"relation":"main_file","checksum":"8e8150dbbba8cb65b72f81d1f0864b8b","creator":"dernst","access_level":"open_access","success":1,"date_created":"2020-11-24T12:19:38Z","file_id":"8799","file_name":"2020_09_NewPhytologist_Zhang.pdf","file_size":3643395,"date_updated":"2020-11-24T12:19:38Z","content_type":"application/pdf"}],"department":[{"_id":"JiFr"}],"citation":{"ama":"Zhang Y, Hartinger C, Wang X, Friml J. Directional auxin fluxes in plants by intramolecular domain‐domain co‐evolution of PIN auxin transporters. New Phytologist. 2020;227(5):1406-1416. doi:10.1111/nph.16629","short":"Y. Zhang, C. Hartinger, X. Wang, J. Friml, New Phytologist 227 (2020) 1406–1416.","chicago":"Zhang, Yuzhou, Corinna Hartinger, Xiaojuan Wang, and Jiří Friml. “Directional Auxin Fluxes in Plants by Intramolecular Domain‐domain Co‐evolution of PIN Auxin Transporters.” New Phytologist. Wiley, 2020. https://doi.org/10.1111/nph.16629.","ieee":"Y. Zhang, C. Hartinger, X. Wang, and J. Friml, “Directional auxin fluxes in plants by intramolecular domain‐domain co‐evolution of PIN auxin transporters,” New Phytologist, vol. 227, no. 5. Wiley, pp. 1406–1416, 2020.","ista":"Zhang Y, Hartinger C, Wang X, Friml J. 2020. Directional auxin fluxes in plants by intramolecular domain‐domain co‐evolution of PIN auxin transporters. New Phytologist. 227(5), 1406–1416.","apa":"Zhang, Y., Hartinger, C., Wang, X., & Friml, J. (2020). Directional auxin fluxes in plants by intramolecular domain‐domain co‐evolution of PIN auxin transporters. New Phytologist. Wiley. https://doi.org/10.1111/nph.16629","mla":"Zhang, Yuzhou, et al. “Directional Auxin Fluxes in Plants by Intramolecular Domain‐domain Co‐evolution of PIN Auxin Transporters.” New Phytologist, vol. 227, no. 5, Wiley, 2020, pp. 1406–16, doi:10.1111/nph.16629."},"has_accepted_license":"1","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","author":[{"last_name":"Zhang","orcid":"0000-0003-2627-6956","id":"3B6137F2-F248-11E8-B48F-1D18A9856A87","full_name":"Zhang, Yuzhou","first_name":"Yuzhou"},{"last_name":"Hartinger","first_name":"Corinna","full_name":"Hartinger, Corinna","id":"AEFB2266-8ABF-11EA-AA39-812C3623CBE4","orcid":"0000-0003-1618-2737"},{"last_name":"Wang","first_name":"Xiaojuan","full_name":"Wang, Xiaojuan"},{"last_name":"Friml","orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jiří","full_name":"Friml, Jiří"}],"oa":1,"type":"journal_article","project":[{"grant_number":"742985","name":"Tracing Evolution of Auxin Transport and Polarity in Plants","_id":"261099A6-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"},{"call_identifier":"FWF","_id":"26538374-B435-11E9-9278-68D0E5697425","name":"Molecular mechanisms of endocytic cargo recognition in plants","grant_number":"I03630"},{"name":"International IST Postdoc Fellowship Programme","grant_number":"291734","call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425"}],"date_published":"2020-09-01T00:00:00Z","title":"Directional auxin fluxes in plants by intramolecular domain‐domain co‐evolution of PIN auxin transporters","quality_controlled":"1","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"year":"2020","publication":"New Phytologist","article_processing_charge":"Yes (via OA deal)","volume":227,"ddc":["580"],"date_created":"2020-04-30T08:43:29Z"},{"intvolume":" 26","page":"2288-2302","article_type":"original","language":[{"iso":"eng"}],"publisher":"IEEE","month":"06","isi":1,"acknowledgement":"This work was partially supported by JSPS Grant-in-Aid forYoung Scientists (Start-up) 16H07410, the ERC StartingGrantsrealFlow(StG-2015-637014) andBigSplash(StG-2014-638176). This research was supported by the Scientific Ser-vice Units (SSU) of IST Austria through resources providedby Scientific Computing. We would like to express my grati-tude to Nobuyuki Umetani and Tomas Skrivan for insight-ful discussion.","publication_status":"published","day":"01","status":"public","pmid":1,"publication_identifier":{"issn":["10772626"],"eissn":["19410506"]},"acknowledged_ssus":[{"_id":"ScienComp"}],"issue":"6","abstract":[{"lang":"eng","text":"We introduce dynamically warping grids for adaptive liquid simulation. Our primary contributions are a strategy for dynamically deforming regular grids over the course of a simulation and a method for efficiently utilizing these deforming grids for liquid simulation. Prior work has shown that unstructured grids are very effective for adaptive fluid simulations. However, unstructured grids often lead to complicated implementations and a poor cache hit rate due to inconsistent memory access. Regular grids, on the other hand, provide a fast, fixed memory access pattern and straightforward implementation. Our method combines the advantages of both: we leverage the simplicity of regular grids while still achieving practical and controllable spatial adaptivity. We demonstrate that our method enables adaptive simulations that are fast, flexible, and robust to null-space issues. At the same time, our method is simple to implement and takes advantage of existing highly-tuned algorithms."}],"doi":"10.1109/TVCG.2018.2883628","date_created":"2018-12-16T22:59:21Z","ddc":["006"],"year":"2020","article_processing_charge":"No","volume":26,"publication":"IEEE Transactions on Visualization and Computer Graphics","title":"Simulating liquids on dynamically warping grids","date_published":"2020-06-01T00:00:00Z","quality_controlled":"1","type":"journal_article","file":[{"creator":"wojtan","relation":"main_file","checksum":"8d4c55443a0ee335bb5bb652de503042","success":1,"date_created":"2020-10-08T08:34:53Z","file_id":"8626","access_level":"open_access","file_size":21910098,"date_updated":"2020-10-08T08:34:53Z","content_type":"application/pdf","file_name":"preprint.pdf"}],"department":[{"_id":"ChWo"}],"oa_version":"Submitted Version","date_updated":"2023-09-18T09:30:01Z","oa":1,"author":[{"last_name":"Hikaru","full_name":"Hikaru, Ibayashi","first_name":"Ibayashi"},{"first_name":"Christopher J","id":"3C61F1D2-F248-11E8-B48F-1D18A9856A87","full_name":"Wojtan, Christopher J","orcid":"0000-0001-6646-5546","last_name":"Wojtan"},{"last_name":"Thuerey","first_name":"Nils","full_name":"Thuerey, Nils"},{"last_name":"Igarashi","first_name":"Takeo","full_name":"Igarashi, Takeo"},{"first_name":"Ryoichi","full_name":"Ando, Ryoichi","last_name":"Ando"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","citation":{"ista":"Hikaru I, Wojtan C, Thuerey N, Igarashi T, Ando R. 2020. Simulating liquids on dynamically warping grids. IEEE Transactions on Visualization and Computer Graphics. 26(6), 2288–2302.","mla":"Hikaru, Ibayashi, et al. “Simulating Liquids on Dynamically Warping Grids.” IEEE Transactions on Visualization and Computer Graphics, vol. 26, no. 6, IEEE, 2020, pp. 2288–302, doi:10.1109/TVCG.2018.2883628.","apa":"Hikaru, I., Wojtan, C., Thuerey, N., Igarashi, T., & Ando, R. (2020). Simulating liquids on dynamically warping grids. IEEE Transactions on Visualization and Computer Graphics. IEEE. https://doi.org/10.1109/TVCG.2018.2883628","ama":"Hikaru I, Wojtan C, Thuerey N, Igarashi T, Ando R. Simulating liquids on dynamically warping grids. IEEE Transactions on Visualization and Computer Graphics. 2020;26(6):2288-2302. doi:10.1109/TVCG.2018.2883628","short":"I. Hikaru, C. Wojtan, N. Thuerey, T. Igarashi, R. Ando, IEEE Transactions on Visualization and Computer Graphics 26 (2020) 2288–2302.","chicago":"Hikaru, Ibayashi, Chris Wojtan, Nils Thuerey, Takeo Igarashi, and Ryoichi Ando. “Simulating Liquids on Dynamically Warping Grids.” IEEE Transactions on Visualization and Computer Graphics. IEEE, 2020. https://doi.org/10.1109/TVCG.2018.2883628.","ieee":"I. Hikaru, C. Wojtan, N. Thuerey, T. Igarashi, and R. Ando, “Simulating liquids on dynamically warping grids,” IEEE Transactions on Visualization and Computer Graphics, vol. 26, no. 6. IEEE, pp. 2288–2302, 2020."},"has_accepted_license":"1","_id":"5681","external_id":{"isi":["000532295600014"],"pmid":["30507534"]},"scopus_import":"1","file_date_updated":"2020-10-08T08:34:53Z"},{"scopus_import":"1","external_id":{"isi":["000528269100013"],"arxiv":["1804.07744"]},"_id":"6184","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","citation":{"ieee":"J. Alt, L. Erdös, T. H. Krüger, and D. J. Schröder, “Correlated random matrices: Band rigidity and edge universality,” Annals of Probability, vol. 48, no. 2. Institute of Mathematical Statistics, pp. 963–1001, 2020.","short":"J. Alt, L. Erdös, T.H. Krüger, D.J. Schröder, Annals of Probability 48 (2020) 963–1001.","ama":"Alt J, Erdös L, Krüger TH, Schröder DJ. Correlated random matrices: Band rigidity and edge universality. Annals of Probability. 2020;48(2):963-1001. doi:10.1214/19-AOP1379","chicago":"Alt, Johannes, László Erdös, Torben H Krüger, and Dominik J Schröder. “Correlated Random Matrices: Band Rigidity and Edge Universality.” Annals of Probability. Institute of Mathematical Statistics, 2020. https://doi.org/10.1214/19-AOP1379.","ista":"Alt J, Erdös L, Krüger TH, Schröder DJ. 2020. Correlated random matrices: Band rigidity and edge universality. Annals of Probability. 48(2), 963–1001.","mla":"Alt, Johannes, et al. “Correlated Random Matrices: Band Rigidity and Edge Universality.” Annals of Probability, vol. 48, no. 2, Institute of Mathematical Statistics, 2020, pp. 963–1001, doi:10.1214/19-AOP1379.","apa":"Alt, J., Erdös, L., Krüger, T. H., & Schröder, D. J. (2020). Correlated random matrices: Band rigidity and edge universality. Annals of Probability. 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Our theorem also applies to internal edges of the self-consistent density of states. In particular, we establish a strong form of band rigidity which excludes mismatches between location and label of eigenvalues close to internal edges in these general models."}],"doi":"10.1214/19-AOP1379","issue":"2","publication_identifier":{"issn":["0091-1798"]},"status":"public","day":"01","ec_funded":1,"publication_status":"published","isi":1,"month":"03","related_material":{"record":[{"status":"public","id":"149","relation":"dissertation_contains"},{"relation":"dissertation_contains","id":"6179","status":"public"}]},"publisher":"Institute of Mathematical Statistics","language":[{"iso":"eng"}],"arxiv":1,"page":"963-1001","article_type":"original","intvolume":" 48"},{"publisher":"Springer Nature","article_type":"original","page":"1203-1278","intvolume":" 378","language":[{"iso":"eng"}],"arxiv":1,"publication_identifier":{"eissn":["1432-0916"],"issn":["0010-3616"]},"status":"public","doi":"10.1007/s00220-019-03657-4","abstract":[{"lang":"eng","text":"For complex Wigner-type matrices, i.e. Hermitian random matrices with independent, not necessarily identically distributed entries above the diagonal, we show that at any cusp singularity of the limiting eigenvalue distribution the local eigenvalue statistics are universal and form a Pearcey process. Since the density of states typically exhibits only square root or cubic root cusp singularities, our work complements previous results on the bulk and edge universality and it thus completes the resolution of the Wigner–Dyson–Mehta universality conjecture for the last remaining universality type in the complex Hermitian class. Our analysis holds not only for exact cusps, but approximate cusps as well, where an extended Pearcey process emerges. As a main technical ingredient we prove an optimal local law at the cusp for both symmetry classes. This result is also the key input in the companion paper (Cipolloni et al. in Pure Appl Anal, 2018. arXiv:1811.04055) where the cusp universality for real symmetric Wigner-type matrices is proven. The novel cusp fluctuation mechanism is also essential for the recent results on the spectral radius of non-Hermitian random matrices (Alt et al. in Spectral radius of random matrices with independent entries, 2019. arXiv:1907.13631), and the non-Hermitian edge universality (Cipolloni et al. in Edge universality for non-Hermitian random matrices, 2019. arXiv:1908.00969)."}],"month":"09","related_material":{"record":[{"id":"6179","relation":"dissertation_contains","status":"public"}]},"isi":1,"ec_funded":1,"day":"01","publication_status":"published","acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria). The authors are very grateful to Johannes Alt for numerous discussions on the Dyson equation and for his invaluable help in adjusting [10] to the needs of the present work.","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"quality_controlled":"1","date_published":"2020-09-01T00:00:00Z","title":"Cusp universality for random matrices I: Local law and the complex Hermitian case","project":[{"name":"Random matrices, universality and disordered quantum systems","grant_number":"338804","_id":"258DCDE6-B435-11E9-9278-68D0E5697425","call_identifier":"FP7"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"date_created":"2019-03-28T10:21:15Z","ddc":["530","510"],"volume":378,"article_processing_charge":"Yes (via OA deal)","publication":"Communications in Mathematical Physics","year":"2020","_id":"6185","scopus_import":"1","file_date_updated":"2020-11-18T11:14:37Z","external_id":{"isi":["000529483000001"],"arxiv":["1809.03971"]},"type":"journal_article","oa":1,"author":[{"id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","full_name":"Erdös, László","first_name":"László","orcid":"0000-0001-5366-9603","last_name":"Erdös"},{"last_name":"Krüger","orcid":"0000-0002-4821-3297","full_name":"Krüger, Torben H","first_name":"Torben H","id":"3020C786-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Schröder","id":"408ED176-F248-11E8-B48F-1D18A9856A87","first_name":"Dominik J","full_name":"Schröder, Dominik J","orcid":"0000-0002-2904-1856"}],"citation":{"chicago":"Erdös, László, Torben H Krüger, and Dominik J Schröder. “Cusp Universality for Random Matrices I: Local Law and the Complex Hermitian Case.” Communications in Mathematical Physics. 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Non-commutative calculus, optimal transport and functional inequalities in dissipative quantum systems. Journal of Statistical Physics. 178(2), 319–378.","mla":"Carlen, Eric A., and Jan Maas. “Non-Commutative Calculus, Optimal Transport and Functional Inequalities in Dissipative Quantum Systems.” Journal of Statistical Physics, vol. 178, no. 2, Springer Nature, 2020, pp. 319–78, doi:10.1007/s10955-019-02434-w.","apa":"Carlen, E. A., & Maas, J. (2020). Non-commutative calculus, optimal transport and functional inequalities in dissipative quantum systems. Journal of Statistical Physics. Springer Nature. https://doi.org/10.1007/s10955-019-02434-w","ieee":"E. A. Carlen and J. Maas, “Non-commutative calculus, optimal transport and functional inequalities in dissipative quantum systems,” Journal of Statistical Physics, vol. 178, no. 2. Springer Nature, pp. 319–378, 2020.","ama":"Carlen EA, Maas J. 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Our settingcovers arbitrary skew-derivations and it provides a unified framework that simultaneously generalizes recently constructed transport metrics for Markov chains, Lindblad equations, and the Fermi Ornstein–Uhlenbeck semigroup. We develop a non-nommutative differential calculus that allows us to obtain non-commutative Ricci curvature bounds, logarithmic Sobolev inequalities, transport-entropy inequalities, andspectral gap estimates."}],"doi":"10.1007/s10955-019-02434-w","issue":"2","publication_identifier":{"issn":["00224715"],"eissn":["15729613"]},"status":"public","ec_funded":1,"day":"01","publication_status":"published","related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1007/s10955-020-02671-4"}]},"month":"01","isi":1,"publisher":"Springer Nature","arxiv":1,"language":[{"iso":"eng"}],"article_type":"original","page":"319-378","intvolume":" 178"},{"publisher":"Institute of Mathematical Statistics","article_type":"original","article_number":"82","intvolume":" 25","language":[{"iso":"eng"}],"arxiv":1,"publication_identifier":{"eissn":["1083-6489"]},"status":"public","abstract":[{"lang":"eng","text":"The strong rate of convergence of the Euler-Maruyama scheme for nondegenerate SDEs with irregular drift coefficients is considered. In the case of α-Hölder drift in the recent literature the rate α/2 was proved in many related situations. By exploiting the regularising effect of the noise more efficiently, we show that the rate is in fact arbitrarily close to 1/2 for all α>0. The result extends to Dini continuous coefficients, while in d=1 also to all bounded measurable coefficients."}],"doi":"10.1214/20-EJP479","isi":1,"month":"07","day":"16","publication_status":"published","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"quality_controlled":"1","date_published":"2020-07-16T00:00:00Z","title":"On the regularisation of the noise for the Euler-Maruyama scheme with irregular drift","ddc":["510"],"date_created":"2019-04-30T07:40:17Z","publication":"Electronic Journal of Probability","article_processing_charge":"No","volume":25,"year":"2020","_id":"6359","file_date_updated":"2020-09-21T13:15:02Z","scopus_import":"1","external_id":{"isi":["000550150700001"],"arxiv":["1812.04583"]},"type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"chicago":"Dareiotis, Konstantinos, and Mate Gerencser. “On the Regularisation of the Noise for the Euler-Maruyama Scheme with Irregular Drift.” Electronic Journal of Probability. 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We find that the fluctuation of this difference is much smaller than those of the individual linear statistics, as a consequence of the strong correlation between the eigenvalues of W˜ and W. Our result identifies the fluctuation of the spatial derivative of the approximate Gaussian field in the recent paper by Dumitru and Paquette. Unlike in a similar result for Wigner matrices, for sample covariance matrices, the fluctuation may entirely vanish."}],"issue":"3","publication_identifier":{"eissn":["20103271"],"issn":["20103263"]},"status":"public","ec_funded":1,"day":"01","publication_status":"published","month":"07","isi":1,"quality_controlled":"1","date_published":"2020-07-01T00:00:00Z","title":"Fluctuations for differences of linear eigenvalue statistics for sample covariance matrices","project":[{"call_identifier":"FP7","_id":"258DCDE6-B435-11E9-9278-68D0E5697425","name":"Random matrices, universality and disordered quantum systems","grant_number":"338804"},{"_id":"2564DBCA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"International IST Doctoral Program","grant_number":"665385"}],"article_processing_charge":"No","volume":9,"publication":"Random Matrices: Theory and Application","year":"2020","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1806.08751"}],"date_created":"2019-05-26T21:59:14Z","scopus_import":"1","external_id":{"isi":["000547464400001"],"arxiv":["1806.08751"]},"_id":"6488","author":[{"last_name":"Cipolloni","id":"42198EFA-F248-11E8-B48F-1D18A9856A87","first_name":"Giorgio","full_name":"Cipolloni, Giorgio","orcid":"0000-0002-4901-7992"},{"last_name":"Erdös","orcid":"0000-0001-5366-9603","first_name":"László","full_name":"Erdös, László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87"}],"oa":1,"citation":{"ama":"Cipolloni G, Erdös L. Fluctuations for differences of linear eigenvalue statistics for sample covariance matrices. Random Matrices: Theory and Application. 2020;9(3). doi:10.1142/S2010326320500069","short":"G. Cipolloni, L. Erdös, Random Matrices: Theory and Application 9 (2020).","chicago":"Cipolloni, Giorgio, and László Erdös. “Fluctuations for Differences of Linear Eigenvalue Statistics for Sample Covariance Matrices.” Random Matrices: Theory and Application. World Scientific Publishing, 2020. https://doi.org/10.1142/S2010326320500069.","ieee":"G. Cipolloni and L. Erdös, “Fluctuations for differences of linear eigenvalue statistics for sample covariance matrices,” Random Matrices: Theory and Application, vol. 9, no. 3. World Scientific Publishing, 2020.","ista":"Cipolloni G, Erdös L. 2020. Fluctuations for differences of linear eigenvalue statistics for sample covariance matrices. Random Matrices: Theory and Application. 9(3), 2050006.","apa":"Cipolloni, G., & Erdös, L. (2020). Fluctuations for differences of linear eigenvalue statistics for sample covariance matrices. Random Matrices: Theory and Application. World Scientific Publishing. https://doi.org/10.1142/S2010326320500069","mla":"Cipolloni, Giorgio, and László Erdös. “Fluctuations for Differences of Linear Eigenvalue Statistics for Sample Covariance Matrices.” Random Matrices: Theory and Application, vol. 9, no. 3, 2050006, World Scientific Publishing, 2020, doi:10.1142/S2010326320500069."},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","department":[{"_id":"LaEr"}],"date_updated":"2023-08-28T08:38:48Z","oa_version":"Preprint","type":"journal_article"},{"type":"journal_article","oa_version":"Preprint","date_updated":"2023-08-17T13:50:44Z","department":[{"_id":"UlWa"}],"citation":{"ista":"Filakovský M, Vokřínek L. 2020. Are two given maps homotopic? An algorithmic viewpoint. Foundations of Computational Mathematics. 20, 311–330.","mla":"Filakovský, Marek, and Lukas Vokřínek. “Are Two given Maps Homotopic? An Algorithmic Viewpoint.” Foundations of Computational Mathematics, vol. 20, Springer Nature, 2020, pp. 311–30, doi:10.1007/s10208-019-09419-x.","apa":"Filakovský, M., & Vokřínek, L. (2020). Are two given maps homotopic? An algorithmic viewpoint. Foundations of Computational Mathematics. Springer Nature. https://doi.org/10.1007/s10208-019-09419-x","ieee":"M. Filakovský and L. Vokřínek, “Are two given maps homotopic? An algorithmic viewpoint,” Foundations of Computational Mathematics, vol. 20. Springer Nature, pp. 311–330, 2020.","short":"M. Filakovský, L. Vokřínek, Foundations of Computational Mathematics 20 (2020) 311–330.","ama":"Filakovský M, Vokřínek L. Are two given maps homotopic? An algorithmic viewpoint. Foundations of Computational Mathematics. 2020;20:311-330. doi:10.1007/s10208-019-09419-x","chicago":"Filakovský, Marek, and Lukas Vokřínek. “Are Two given Maps Homotopic? An Algorithmic Viewpoint.” Foundations of Computational Mathematics. Springer Nature, 2020. https://doi.org/10.1007/s10208-019-09419-x."},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","author":[{"first_name":"Marek","full_name":"Filakovský, Marek","id":"3E8AF77E-F248-11E8-B48F-1D18A9856A87","last_name":"Filakovský"},{"last_name":"Vokřínek","first_name":"Lukas","full_name":"Vokřínek, Lukas"}],"oa":1,"_id":"6563","external_id":{"isi":["000522437400004"],"arxiv":["1312.2337"]},"scopus_import":"1","date_created":"2019-06-16T21:59:14Z","year":"2020","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1312.2337"}],"publication":"Foundations of Computational Mathematics","article_processing_charge":"No","volume":20,"project":[{"call_identifier":"FWF","_id":"26611F5C-B435-11E9-9278-68D0E5697425","grant_number":"P31312","name":"Algorithms for Embeddings and Homotopy Theory"}],"title":"Are two given maps homotopic? An algorithmic viewpoint","date_published":"2020-04-01T00:00:00Z","quality_controlled":"1","isi":1,"month":"04","publication_status":"published","day":"01","status":"public","publication_identifier":{"eissn":["16153383"],"issn":["16153375"]},"doi":"10.1007/s10208-019-09419-x","abstract":[{"lang":"eng","text":"This paper presents two algorithms. The first decides the existence of a pointed homotopy between given simplicial maps 𝑓,𝑔:𝑋→𝑌, and the second computes the group [𝛴𝑋,𝑌]∗ of pointed homotopy classes of maps from a suspension; in both cases, the target Y is assumed simply connected. More generally, these algorithms work relative to 𝐴⊆𝑋."}],"intvolume":" 20","article_type":"original","page":"311-330","arxiv":1,"language":[{"iso":"eng"}],"publisher":"Springer Nature"},{"quality_controlled":"1","date_published":"2020-05-01T00:00:00Z","title":"An efficient projection-type method for monotone variational inequalities in Hilbert spaces","project":[{"call_identifier":"FP7","_id":"25FBA906-B435-11E9-9278-68D0E5697425","grant_number":"616160","name":"Discrete Optimization in Computer Vision: Theory and Practice"}],"date_created":"2019-06-27T20:09:33Z","ddc":["000"],"volume":84,"article_processing_charge":"No","publication":"Numerical Algorithms","year":"2020","_id":"6593","scopus_import":"1","file_date_updated":"2020-07-14T12:47:34Z","external_id":{"isi":["000528979000015"]},"type":"journal_article","oa":1,"author":[{"last_name":"Shehu","id":"3FC7CB58-F248-11E8-B48F-1D18A9856A87","first_name":"Yekini","full_name":"Shehu, Yekini","orcid":"0000-0001-9224-7139"},{"last_name":"Li","full_name":"Li, Xiao-Huan","first_name":"Xiao-Huan"},{"last_name":"Dong","first_name":"Qiao-Li","full_name":"Dong, Qiao-Li"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","has_accepted_license":"1","citation":{"mla":"Shehu, Yekini, et al. “An Efficient Projection-Type Method for Monotone Variational Inequalities in Hilbert Spaces.” Numerical Algorithms, vol. 84, Springer Nature, 2020, pp. 365–88, doi:10.1007/s11075-019-00758-y.","apa":"Shehu, Y., Li, X.-H., & Dong, Q.-L. (2020). An efficient projection-type method for monotone variational inequalities in Hilbert spaces. Numerical Algorithms. Springer Nature. https://doi.org/10.1007/s11075-019-00758-y","ista":"Shehu Y, Li X-H, Dong Q-L. 2020. An efficient projection-type method for monotone variational inequalities in Hilbert spaces. Numerical Algorithms. 84, 365–388.","chicago":"Shehu, Yekini, Xiao-Huan Li, and Qiao-Li Dong. “An Efficient Projection-Type Method for Monotone Variational Inequalities in Hilbert Spaces.” Numerical Algorithms. Springer Nature, 2020. https://doi.org/10.1007/s11075-019-00758-y.","ama":"Shehu Y, Li X-H, Dong Q-L. An efficient projection-type method for monotone variational inequalities in Hilbert spaces. Numerical Algorithms. 2020;84:365-388. doi:10.1007/s11075-019-00758-y","short":"Y. Shehu, X.-H. Li, Q.-L. Dong, Numerical Algorithms 84 (2020) 365–388.","ieee":"Y. Shehu, X.-H. Li, and Q.-L. Dong, “An efficient projection-type method for monotone variational inequalities in Hilbert spaces,” Numerical Algorithms, vol. 84. Springer Nature, pp. 365–388, 2020."},"department":[{"_id":"VlKo"}],"file":[{"relation":"main_file","checksum":"bb1a1eb3ebb2df380863d0db594673ba","creator":"kschuh","access_level":"open_access","date_created":"2019-10-01T13:14:10Z","file_id":"6927","file_name":"ExtragradientMethodPaper.pdf","file_size":359654,"content_type":"application/pdf","date_updated":"2020-07-14T12:47:34Z"}],"oa_version":"Submitted Version","date_updated":"2023-08-17T13:51:18Z","publisher":"Springer Nature","page":"365-388","article_type":"original","intvolume":" 84","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1572-9265"],"issn":["1017-1398"]},"status":"public","abstract":[{"text":"We consider the monotone variational inequality problem in a Hilbert space and describe a projection-type method with inertial terms under the following properties: (a) The method generates a strongly convergent iteration sequence; (b) The method requires, at each iteration, only one projection onto the feasible set and two evaluations of the operator; (c) The method is designed for variational inequality for which the underline operator is monotone and uniformly continuous; (d) The method includes an inertial term. The latter is also shown to speed up the convergence in our numerical results. A comparison with some related methods is given and indicates that the new method is promising.","lang":"eng"}],"doi":"10.1007/s11075-019-00758-y","month":"05","isi":1,"ec_funded":1,"day":"01","acknowledgement":"The research of this author is supported by the ERC grant at the IST.","publication_status":"published"},{"date_published":"2020-12-01T00:00:00Z","title":"STL-files for 3D-printed grid holders described in Fäßler F, Zens B, et al.; 3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy","project":[{"grant_number":"P33367","name":"Structure and isoform diversity of the Arp2/3 complex","_id":"9B954C5C-BA93-11EA-9121-9846C619BF3A"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","short":"CC BY-NC-SA (4.0)","image":"/images/cc_by_nc_sa.png","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)"},"publisher":"Institute of Science and Technology Austria","year":"2020","contributor":[{"last_name":"Fäßler","first_name":"Florian","id":"404F5528-F248-11E8-B48F-1D18A9856A87","contributor_type":"researcher","orcid":"0000-0001-7149-769X"},{"contributor_type":"researcher","first_name":"Bettina","id":"45FD126C-F248-11E8-B48F-1D18A9856A87","last_name":"Zens"},{"contributor_type":"researcher","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","first_name":"Robert","last_name":"Hauschild"},{"last_name":"Schur","orcid":"0000-0003-4790-8078","contributor_type":"researcher","first_name":"Florian KM","id":"48AD8942-F248-11E8-B48F-1D18A9856A87"}],"article_processing_charge":"No","date_created":"2023-11-22T15:00:57Z","ddc":["570"],"license":"https://creativecommons.org/licenses/by-nc-sa/4.0/","file_date_updated":"2023-12-01T10:39:59Z","doi":"10.15479/AT:ISTA:14592","abstract":[{"lang":"eng","text":"Cryo-electron microscopy (cryo-EM) of cellular specimens provides insights into biological processes and structures within a native context. However, a major challenge still lies in the efficient and reproducible preparation of adherent cells for subsequent cryo-EM analysis. This is due to the sensitivity of many cellular specimens to the varying seeding and culturing conditions required for EM experiments, the often limited amount of cellular material and also the fragility of EM grids and their substrate. Here, we present low-cost and reusable 3D printed grid holders, designed to improve specimen preparation when culturing challenging cellular samples directly on grids. The described grid holders increase cell culture reproducibility and throughput, and reduce the resources required for cell culturing. We show that grid holders can be integrated into various cryo-EM workflows, including micro-patterning approaches to control cell seeding on grids, and for generating samples for cryo-focused ion beam milling and cryo-electron tomography experiments. Their adaptable design allows for the generation of specialized grid holders customized to a large variety of applications."}],"_id":"14592","status":"public","file":[{"content_type":"application/zip","date_updated":"2023-11-22T14:58:44Z","file_size":49297,"file_name":"3Dprint-files_download_v2.zip","file_id":"14593","success":1,"date_created":"2023-11-22T14:58:44Z","access_level":"open_access","creator":"fschur","checksum":"0108616e2a59e51879ea51299a29b091","relation":"main_file"},{"checksum":"4c66ddedee4d01c1c4a7978208350cfc","relation":"main_file","creator":"cchlebak","file_name":"readme.txt","date_updated":"2023-12-01T10:39:59Z","content_type":"text/plain","file_size":641,"access_level":"open_access","file_id":"14637","date_created":"2023-12-01T10:39:59Z","success":1}],"department":[{"_id":"FlSc"}],"date_updated":"2024-02-21T12:44:48Z","oa_version":"Published Version","author":[{"last_name":"Schur","orcid":"0000-0003-4790-8078","id":"48AD8942-F248-11E8-B48F-1D18A9856A87","first_name":"Florian KM","full_name":"Schur, Florian KM"}],"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"01","has_accepted_license":"1","citation":{"apa":"Schur, F. K. (2020). STL-files for 3D-printed grid holders described in Fäßler F, Zens B, et al.; 3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:14592","mla":"Schur, Florian KM. STL-Files for 3D-Printed Grid Holders Described in Fäßler F, Zens B, et Al.; 3D Printed Cell Culture Grid Holders for Improved Cellular Specimen Preparation in Cryo-Electron Microscopy. Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:14592.","ista":"Schur FK. 2020. STL-files for 3D-printed grid holders described in Fäßler F, Zens B, et al.; 3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy, Institute of Science and Technology Austria, 10.15479/AT:ISTA:14592.","ieee":"F. K. Schur, “STL-files for 3D-printed grid holders described in Fäßler F, Zens B, et al.; 3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy.” Institute of Science and Technology Austria, 2020.","chicago":"Schur, Florian KM. “STL-Files for 3D-Printed Grid Holders Described in Fäßler F, Zens B, et Al.; 3D Printed Cell Culture Grid Holders for Improved Cellular Specimen Preparation in Cryo-Electron Microscopy.” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:14592.","ama":"Schur FK. STL-files for 3D-printed grid holders described in Fäßler F, Zens B, et al.; 3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy. 2020. doi:10.15479/AT:ISTA:14592","short":"F.K. Schur, (2020)."},"related_material":{"record":[{"status":"public","id":"8586","relation":"research_data"}]},"month":"12","type":"research_data"},{"intvolume":" 25","article_type":"original","page":"1421-1539","arxiv":1,"language":[{"iso":"eng"}],"publisher":"EMS Press","month":"09","related_material":{"record":[{"status":"public","id":"6183","relation":"earlier_version"}]},"publication_status":"published","day":"01","status":"public","publication_identifier":{"eissn":["1431-0643"],"issn":["1431-0635"]},"doi":"10.4171/dm/780","abstract":[{"lang":"eng","text":"We study the unique solution m of the Dyson equation \\( -m(z)^{-1} = z\\1 - a + S[m(z)] \\) on a von Neumann algebra A with the constraint Imm≥0. Here, z lies in the complex upper half-plane, a is a self-adjoint element of A and S is a positivity-preserving linear operator on A. We show that m is the Stieltjes transform of a compactly supported A-valued measure on R. Under suitable assumptions, we establish that this measure has a uniformly 1/3-Hölder continuous density with respect to the Lebesgue measure, which is supported on finitely many intervals, called bands. In fact, the density is analytic inside the bands with a square-root growth at the edges and internal cubic root cusps whenever the gap between two bands vanishes. The shape of these singularities is universal and no other singularity may occur. We give a precise asymptotic description of m near the singular points. These asymptotics generalize the analysis at the regular edges given in the companion paper on the Tracy-Widom universality for the edge eigenvalue statistics for correlated random matrices [the first author et al., Ann. Probab. 48, No. 2, 963--1001 (2020; Zbl 1434.60017)] and they play a key role in the proof of the Pearcey universality at the cusp for Wigner-type matrices [G. Cipolloni et al., Pure Appl. Anal. 1, No. 4, 615--707 (2019; Zbl 07142203); the second author et al., Commun. Math. Phys. 378, No. 2, 1203--1278 (2020; Zbl 07236118)]. We also extend the finite dimensional band mass formula from [the first author et al., loc. cit.] to the von Neumann algebra setting by showing that the spectral mass of the bands is topologically rigid under deformations and we conclude that these masses are quantized in some important cases."}],"date_created":"2023-12-18T10:37:43Z","ddc":["510"],"year":"2020","article_processing_charge":"Yes","volume":25,"publication":"Documenta Mathematica","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"keyword":["General Mathematics"],"date_published":"2020-09-01T00:00:00Z","title":"The Dyson equation with linear self-energy: Spectral bands, edges and cusps","quality_controlled":"1","type":"journal_article","department":[{"_id":"LaEr"}],"file":[{"creator":"dernst","relation":"main_file","checksum":"12aacc1d63b852ff9a51c1f6b218d4a6","file_size":1374708,"content_type":"application/pdf","date_updated":"2023-12-18T10:42:32Z","file_name":"2020_DocumentaMathematica_Alt.pdf","date_created":"2023-12-18T10:42:32Z","success":1,"file_id":"14695","access_level":"open_access"}],"oa_version":"Published Version","date_updated":"2023-12-18T10:46:09Z","oa":1,"author":[{"full_name":"Alt, Johannes","first_name":"Johannes","id":"36D3D8B6-F248-11E8-B48F-1D18A9856A87","last_name":"Alt"},{"last_name":"Erdös","orcid":"0000-0001-5366-9603","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","first_name":"László","full_name":"Erdös, László"},{"id":"3020C786-F248-11E8-B48F-1D18A9856A87","first_name":"Torben H","full_name":"Krüger, Torben H","orcid":"0000-0002-4821-3297","last_name":"Krüger"}],"citation":{"ieee":"J. Alt, L. Erdös, and T. H. Krüger, “The Dyson equation with linear self-energy: Spectral bands, edges and cusps,” Documenta Mathematica, vol. 25. EMS Press, pp. 1421–1539, 2020.","ama":"Alt J, Erdös L, Krüger TH. The Dyson equation with linear self-energy: Spectral bands, edges and cusps. Documenta Mathematica. 2020;25:1421-1539. doi:10.4171/dm/780","short":"J. Alt, L. Erdös, T.H. Krüger, Documenta Mathematica 25 (2020) 1421–1539.","chicago":"Alt, Johannes, László Erdös, and Torben H Krüger. “The Dyson Equation with Linear Self-Energy: Spectral Bands, Edges and Cusps.” Documenta Mathematica. EMS Press, 2020. https://doi.org/10.4171/dm/780.","ista":"Alt J, Erdös L, Krüger TH. 2020. The Dyson equation with linear self-energy: Spectral bands, edges and cusps. Documenta Mathematica. 25, 1421–1539.","mla":"Alt, Johannes, et al. “The Dyson Equation with Linear Self-Energy: Spectral Bands, Edges and Cusps.” Documenta Mathematica, vol. 25, EMS Press, 2020, pp. 1421–539, doi:10.4171/dm/780.","apa":"Alt, J., Erdös, L., & Krüger, T. H. (2020). The Dyson equation with linear self-energy: Spectral bands, edges and cusps. Documenta Mathematica. EMS Press. https://doi.org/10.4171/dm/780"},"has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14694","external_id":{"arxiv":["1804.07752"]},"file_date_updated":"2023-12-18T10:42:32Z"},{"issue":"1","doi":"10.2140/paa.2020.2.35","abstract":[{"lang":"eng","text":"We give the first mathematically rigorous justification of the local density approximation in density functional theory. We provide a quantitative estimate on the difference between the grand-canonical Levy–Lieb energy of a given density (the lowest possible energy of all quantum states having this density) and the integral over the uniform electron gas energy of this density. The error involves gradient terms and justifies the use of the local density approximation in the situation where the density is very flat on sufficiently large regions in space."}],"status":"public","publication_identifier":{"issn":["2578-5893"],"eissn":["2578-5885"]},"publication_status":"published","day":"01","month":"01","publisher":"Mathematical Sciences Publishers","arxiv":1,"language":[{"iso":"eng"}],"intvolume":" 2","article_type":"original","page":"35-73","external_id":{"arxiv":["1903.04046"]},"scopus_import":"1","_id":"14891","date_updated":"2024-01-29T09:01:12Z","oa_version":"Preprint","department":[{"_id":"RoSe"}],"citation":{"ieee":"M. Lewin, E. H. Lieb, and R. Seiringer, “ The local density approximation in density functional theory,” Pure and Applied Analysis, vol. 2, no. 1. Mathematical Sciences Publishers, pp. 35–73, 2020.","ama":"Lewin M, Lieb EH, Seiringer R. The local density approximation in density functional theory. Pure and Applied Analysis. 2020;2(1):35-73. doi:10.2140/paa.2020.2.35","short":"M. Lewin, E.H. Lieb, R. Seiringer, Pure and Applied Analysis 2 (2020) 35–73.","chicago":"Lewin, Mathieu, Elliott H. Lieb, and Robert Seiringer. “ The Local Density Approximation in Density Functional Theory.” Pure and Applied Analysis. Mathematical Sciences Publishers, 2020. https://doi.org/10.2140/paa.2020.2.35.","ista":"Lewin M, Lieb EH, Seiringer R. 2020. The local density approximation in density functional theory. Pure and Applied Analysis. 2(1), 35–73.","apa":"Lewin, M., Lieb, E. H., & Seiringer, R. (2020). The local density approximation in density functional theory. Pure and Applied Analysis. Mathematical Sciences Publishers. https://doi.org/10.2140/paa.2020.2.35","mla":"Lewin, Mathieu, et al. “ The Local Density Approximation in Density Functional Theory.” Pure and Applied Analysis, vol. 2, no. 1, Mathematical Sciences Publishers, 2020, pp. 35–73, doi:10.2140/paa.2020.2.35."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"author":[{"last_name":"Lewin","first_name":"Mathieu","full_name":"Lewin, Mathieu"},{"first_name":"Elliott H.","full_name":"Lieb, Elliott H.","last_name":"Lieb"},{"last_name":"Seiringer","orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert","first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"type":"journal_article","title":" The local density approximation in density functional theory","date_published":"2020-01-01T00:00:00Z","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1903.04046"}],"year":"2020","publication":"Pure and Applied Analysis","volume":2,"article_processing_charge":"No","date_created":"2024-01-28T23:01:44Z"},{"external_id":{"pmid":["32910969"]},"_id":"15036","department":[{"_id":"MaLo"}],"date_updated":"2024-02-28T12:37:54Z","oa_version":"Published Version","author":[{"last_name":"Rosa","full_name":"Rosa, Higor Vinícius Dias","first_name":"Higor Vinícius Dias"},{"last_name":"Leonardo","full_name":"Leonardo, Diego Antonio","first_name":"Diego Antonio"},{"id":"D96FFDA0-A884-11E9-9968-DC26E6697425","full_name":"Brognara, Gabriel","first_name":"Gabriel","last_name":"Brognara"},{"last_name":"Brandão-Neto","first_name":"José","full_name":"Brandão-Neto, José"},{"last_name":"D'Muniz Pereira","full_name":"D'Muniz Pereira, Humberto","first_name":"Humberto"},{"last_name":"Araújo","full_name":"Araújo, Ana Paula Ulian","first_name":"Ana Paula Ulian"},{"first_name":"Richard Charles","full_name":"Garratt, Richard Charles","last_name":"Garratt"}],"oa":1,"citation":{"chicago":"Rosa, Higor Vinícius Dias, Diego Antonio Leonardo, Gabriel Brognara, José Brandão-Neto, Humberto D’Muniz Pereira, Ana Paula Ulian Araújo, and Richard Charles Garratt. “Molecular Recognition at Septin Interfaces: The Switches Hold the Key.” Journal of Molecular Biology. Elsevier, 2020. https://doi.org/10.1016/j.jmb.2020.09.001.","ama":"Rosa HVD, Leonardo DA, Brognara G, et al. Molecular recognition at septin interfaces: The switches hold the key. Journal of Molecular Biology. 2020;432(21):5784-5801. doi:10.1016/j.jmb.2020.09.001","short":"H.V.D. Rosa, D.A. Leonardo, G. Brognara, J. Brandão-Neto, H. D’Muniz Pereira, A.P.U. Araújo, R.C. Garratt, Journal of Molecular Biology 432 (2020) 5784–5801.","ieee":"H. V. D. Rosa et al., “Molecular recognition at septin interfaces: The switches hold the key,” Journal of Molecular Biology, vol. 432, no. 21. Elsevier, pp. 5784–5801, 2020.","apa":"Rosa, H. V. D., Leonardo, D. A., Brognara, G., Brandão-Neto, J., D’Muniz Pereira, H., Araújo, A. P. U., & Garratt, R. C. (2020). Molecular recognition at septin interfaces: The switches hold the key. Journal of Molecular Biology. Elsevier. https://doi.org/10.1016/j.jmb.2020.09.001","mla":"Rosa, Higor Vinícius Dias, et al. “Molecular Recognition at Septin Interfaces: The Switches Hold the Key.” Journal of Molecular Biology, vol. 432, no. 21, Elsevier, 2020, pp. 5784–801, doi:10.1016/j.jmb.2020.09.001.","ista":"Rosa HVD, Leonardo DA, Brognara G, Brandão-Neto J, D’Muniz Pereira H, Araújo APU, Garratt RC. 2020. Molecular recognition at septin interfaces: The switches hold the key. Journal of Molecular Biology. 432(21), 5784–5801."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","keyword":["Molecular Biology","Structural Biology"],"title":"Molecular recognition at septin interfaces: The switches hold the key","date_published":"2020-10-02T00:00:00Z","quality_controlled":"1","main_file_link":[{"url":"https://doi.org/10.1016/j.jmb.2020.09.001","open_access":"1"}],"year":"2020","volume":432,"article_processing_charge":"No","publication":"Journal of Molecular Biology","date_created":"2024-02-28T08:50:34Z","issue":"21","doi":"10.1016/j.jmb.2020.09.001","abstract":[{"text":"The assembly of a septin filament requires that homologous monomers must distinguish between one another in establishing appropriate interfaces with their neighbors. To understand this phenomenon at the molecular level, we present the first four crystal structures of heterodimeric septin complexes. We describe in detail the two distinct types of G-interface present within the octameric particles, which must polymerize to form filaments. These are formed between SEPT2 and SEPT6 and between SEPT7 and SEPT3, and their description permits an understanding of the structural basis for the selectivity necessary for correct filament assembly. By replacing SEPT6 by SEPT8 or SEPT11, it is possible to rationalize Kinoshita's postulate, which predicts the exchangeability of septins from within a subgroup. Switches I and II, which in classical small GTPases provide a mechanism for nucleotide-dependent conformational change, have been repurposed in septins to play a fundamental role in molecular recognition. Specifically, it is switch I which holds the key to discriminating between the two different G-interfaces. Moreover, residues which are characteristic for a given subgroup play subtle, but pivotal, roles in guaranteeing that the correct interfaces are formed.","lang":"eng"}],"status":"public","pmid":1,"publication_identifier":{"issn":["0022-2836"]},"publication_status":"published","day":"02","month":"10","publisher":"Elsevier","language":[{"iso":"eng"}],"intvolume":" 432","article_type":"original","page":"5784-5801"},{"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"quality_controlled":"1","title":"TOLs function as ubiquitin receptors in the early steps of the ESCRT pathway in higher plants","date_published":"2020-05-04T00:00:00Z","keyword":["Plant Science","Molecular Biology"],"date_created":"2024-02-28T08:55:56Z","ddc":["580"],"article_processing_charge":"No","volume":13,"publication":"Molecular Plant","year":"2020","_id":"15037","file_date_updated":"2024-02-28T12:39:56Z","external_id":{"pmid":["32087370"]},"type":"journal_article","author":[{"full_name":"Moulinier-Anzola, Jeanette","first_name":"Jeanette","last_name":"Moulinier-Anzola"},{"full_name":"Schwihla, Maximilian","first_name":"Maximilian","last_name":"Schwihla"},{"last_name":"De-Araújo","full_name":"De-Araújo, Lucinda","first_name":"Lucinda"},{"first_name":"Christina","full_name":"Artner, Christina","id":"45DF286A-F248-11E8-B48F-1D18A9856A87","last_name":"Artner"},{"full_name":"Jörg, Lisa","first_name":"Lisa","last_name":"Jörg"},{"full_name":"Konstantinova, Nataliia","first_name":"Nataliia","last_name":"Konstantinova"},{"first_name":"Christian","full_name":"Luschnig, Christian","last_name":"Luschnig"},{"full_name":"Korbei, Barbara","first_name":"Barbara","last_name":"Korbei"}],"oa":1,"has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ista":"Moulinier-Anzola J, Schwihla M, De-Araújo L, Artner C, Jörg L, Konstantinova N, Luschnig C, Korbei B. 2020. TOLs function as ubiquitin receptors in the early steps of the ESCRT pathway in higher plants. Molecular Plant. 13(5), 717–731.","apa":"Moulinier-Anzola, J., Schwihla, M., De-Araújo, L., Artner, C., Jörg, L., Konstantinova, N., … Korbei, B. (2020). TOLs function as ubiquitin receptors in the early steps of the ESCRT pathway in higher plants. Molecular Plant. Elsevier. https://doi.org/10.1016/j.molp.2020.02.012","mla":"Moulinier-Anzola, Jeanette, et al. “TOLs Function as Ubiquitin Receptors in the Early Steps of the ESCRT Pathway in Higher Plants.” Molecular Plant, vol. 13, no. 5, Elsevier, 2020, pp. 717–31, doi:10.1016/j.molp.2020.02.012.","ieee":"J. Moulinier-Anzola et al., “TOLs function as ubiquitin receptors in the early steps of the ESCRT pathway in higher plants,” Molecular Plant, vol. 13, no. 5. Elsevier, pp. 717–731, 2020.","ama":"Moulinier-Anzola J, Schwihla M, De-Araújo L, et al. TOLs function as ubiquitin receptors in the early steps of the ESCRT pathway in higher plants. Molecular Plant. 2020;13(5):717-731. doi:10.1016/j.molp.2020.02.012","short":"J. Moulinier-Anzola, M. Schwihla, L. De-Araújo, C. Artner, L. Jörg, N. Konstantinova, C. Luschnig, B. Korbei, Molecular Plant 13 (2020) 717–731.","chicago":"Moulinier-Anzola, Jeanette, Maximilian Schwihla, Lucinda De-Araújo, Christina Artner, Lisa Jörg, Nataliia Konstantinova, Christian Luschnig, and Barbara Korbei. “TOLs Function as Ubiquitin Receptors in the Early Steps of the ESCRT Pathway in Higher Plants.” Molecular Plant. Elsevier, 2020. https://doi.org/10.1016/j.molp.2020.02.012."},"file":[{"checksum":"c538a5008f7827f62d17d40a3bfabe65","relation":"main_file","creator":"dernst","access_level":"open_access","file_id":"15038","date_created":"2024-02-28T12:39:56Z","success":1,"file_name":"2020_MolecularPlant_MoulinierAnzola.pdf","content_type":"application/pdf","date_updated":"2024-02-28T12:39:56Z","file_size":3089212}],"department":[{"_id":"EvBe"}],"date_updated":"2024-02-28T12:41:52Z","oa_version":"Published Version","publisher":"Elsevier","article_type":"original","page":"717-731","intvolume":" 13","language":[{"iso":"eng"}],"publication_identifier":{"issn":["1674-2052"]},"status":"public","pmid":1,"abstract":[{"lang":"eng","text":"Protein abundance and localization at the plasma membrane (PM) shapes plant development and mediates adaptation to changing environmental conditions. It is regulated by ubiquitination, a post-translational modification crucial for the proper sorting of endocytosed PM proteins to the vacuole for subsequent degradation. To understand the significance and the variety of roles played by this reversible modification, the function of ubiquitin receptors, which translate the ubiquitin signature into a cellular response, needs to be elucidated. In this study, we show that TOL (TOM1-like) proteins function in plants as multivalent ubiquitin receptors, governing ubiquitinated cargo delivery to the vacuole via the conserved Endosomal Sorting Complex Required for Transport (ESCRT) pathway. TOL2 and TOL6 interact with components of the ESCRT machinery and bind to K63-linked ubiquitin via two tandemly arranged conserved ubiquitin-binding domains. Mutation of these domains results not only in a loss of ubiquitin binding but also altered localization, abolishing TOL6 ubiquitin receptor activity. Function and localization of TOL6 is itself regulated by ubiquitination, whereby TOL6 ubiquitination potentially modulates degradation of PM-localized cargoes, assisting in the fine-tuning of the delicate interplay between protein recycling and downregulation. Taken together, our findings demonstrate the function and regulation of a ubiquitin receptor that mediates vacuolar degradation of PM proteins in higher plants."}],"doi":"10.1016/j.molp.2020.02.012","issue":"5","month":"05","day":"04","publication_status":"published"},{"type":"journal_article","author":[{"full_name":"Brázdil, Tomáš","first_name":"Tomáš","last_name":"Brázdil"},{"orcid":"0000-0002-4561-241X","first_name":"Krishnendu","full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee"},{"last_name":"Novotný","full_name":"Novotný, Petr","first_name":"Petr"},{"first_name":"Jiří","full_name":"Vahala, Jiří","last_name":"Vahala"}],"oa":1,"citation":{"ieee":"T. Brázdil, K. Chatterjee, P. Novotný, and J. Vahala, “Reinforcement learning of risk-constrained policies in Markov decision processes,” Proceedings of the 34th AAAI Conference on Artificial Intelligence, vol. 34, no. 06. Association for the Advancement of Artificial Intelligence, pp. 9794–9801, 2020.","short":"T. Brázdil, K. Chatterjee, P. Novotný, J. Vahala, Proceedings of the 34th AAAI Conference on Artificial Intelligence 34 (2020) 9794–9801.","ama":"Brázdil T, Chatterjee K, Novotný P, Vahala J. Reinforcement learning of risk-constrained policies in Markov decision processes. Proceedings of the 34th AAAI Conference on Artificial Intelligence. 2020;34(06):9794-9801. doi:10.1609/aaai.v34i06.6531","chicago":"Brázdil, Tomáš, Krishnendu Chatterjee, Petr Novotný, and Jiří Vahala. “Reinforcement Learning of Risk-Constrained Policies in Markov Decision Processes.” Proceedings of the 34th AAAI Conference on Artificial Intelligence. Association for the Advancement of Artificial Intelligence, 2020. https://doi.org/10.1609/aaai.v34i06.6531.","ista":"Brázdil T, Chatterjee K, Novotný P, Vahala J. 2020. Reinforcement learning of risk-constrained policies in Markov decision processes. Proceedings of the 34th AAAI Conference on Artificial Intelligence. 34(06), 9794–9801.","mla":"Brázdil, Tomáš, et al. “Reinforcement Learning of Risk-Constrained Policies in Markov Decision Processes.” Proceedings of the 34th AAAI Conference on Artificial Intelligence, vol. 34, no. 06, Association for the Advancement of Artificial Intelligence, 2020, pp. 9794–801, doi:10.1609/aaai.v34i06.6531.","apa":"Brázdil, T., Chatterjee, K., Novotný, P., & Vahala, J. (2020). Reinforcement learning of risk-constrained policies in Markov decision processes. Proceedings of the 34th AAAI Conference on Artificial Intelligence. New York, NY, United States: Association for the Advancement of Artificial Intelligence. https://doi.org/10.1609/aaai.v34i06.6531"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"KrCh"}],"oa_version":"Preprint","date_updated":"2024-03-04T08:30:16Z","_id":"15055","external_id":{"arxiv":["2002.12086"]},"date_created":"2024-03-04T08:07:22Z","article_processing_charge":"No","volume":34,"publication":"Proceedings of the 34th AAAI Conference on Artificial Intelligence","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2002.12086"}],"year":"2020","conference":{"name":"AAAI: Conference on Artificial Intelligence","location":"New York, NY, United States","start_date":"2020-02-07","end_date":"2020-02-12"},"quality_controlled":"1","date_published":"2020-04-03T00:00:00Z","title":"Reinforcement learning of risk-constrained policies in Markov decision processes","keyword":["General Medicine"],"project":[{"name":"Game Theory","grant_number":"S11407","call_identifier":"FWF","_id":"25863FF4-B435-11E9-9278-68D0E5697425"}],"month":"04","day":"03","publication_status":"published","acknowledgement":"Krishnendu Chatterjee is supported by the Austrian Science Fund (FWF) NFN Grant No. S11407-N23 (RiSE/SHiNE), and COST Action GAMENET. Tomas Brazdil is supported by the Grant Agency of Masaryk University grant no. MUNI/G/0739/2017 and by the Czech Science Foundation grant No. 18-11193S. Petr Novotny and Jirı Vahala are supported by the Czech Science Foundation grant No. GJ19-15134Y.","publication_identifier":{"issn":["2374-3468"]},"status":"public","abstract":[{"lang":"eng","text":"Markov decision processes (MDPs) are the defacto framework for sequential decision making in the presence of stochastic uncertainty. A classical optimization criterion for MDPs is to maximize the expected discounted-sum payoff, which ignores low probability catastrophic events with highly negative impact on the system. On the other hand, risk-averse policies require the probability of undesirable events to be below a given threshold, but they do not account for optimization of the expected payoff. We consider MDPs with discounted-sum payoff with failure states which represent catastrophic outcomes. The objective of risk-constrained planning is to maximize the expected discounted-sum payoff among risk-averse policies that ensure the probability to encounter a failure state is below a desired threshold. Our main contribution is an efficient risk-constrained planning algorithm that combines UCT-like search with a predictor learned through interaction with the MDP (in the style of AlphaZero) and with a risk-constrained action selection via linear programming. We demonstrate the effectiveness of our approach with experiments on classical MDPs from the literature, including benchmarks with an order of 106 states."}],"doi":"10.1609/aaai.v34i06.6531","issue":"06","page":"9794-9801","article_type":"original","intvolume":" 34","language":[{"iso":"eng"}],"arxiv":1,"publisher":"Association for the Advancement of Artificial Intelligence"},{"_id":"15057","file_date_updated":"2024-03-04T09:46:41Z","type":"journal_article","file":[{"date_updated":"2024-03-04T09:46:41Z","content_type":"application/pdf","file_size":1864415,"file_name":"2020_ScienceAdvances_Park.pdf","file_id":"15058","date_created":"2024-03-04T09:46:41Z","success":1,"access_level":"open_access","creator":"dernst","checksum":"a37157cd0de709dce5fe03f4a31cd0b6","relation":"main_file"}],"department":[{"_id":"MaDe"}],"oa_version":"Published Version","date_updated":"2024-03-04T09:52:09Z","oa":1,"author":[{"full_name":"Park, Sangsoon","first_name":"Sangsoon","last_name":"Park"},{"last_name":"Artan","orcid":"0000-0001-8945-6992","first_name":"Murat","id":"C407B586-6052-11E9-B3AE-7006E6697425","full_name":"Artan, Murat"},{"last_name":"Han","first_name":"Seung Hyun","full_name":"Han, Seung Hyun"},{"last_name":"Park","full_name":"Park, Hae-Eun H.","first_name":"Hae-Eun H."},{"last_name":"Jung","full_name":"Jung, Yoonji","first_name":"Yoonji"},{"full_name":"Hwang, Ara B.","first_name":"Ara B.","last_name":"Hwang"},{"last_name":"Shin","first_name":"Won Sik","full_name":"Shin, Won Sik"},{"first_name":"Kyong-Tai","full_name":"Kim, Kyong-Tai","last_name":"Kim"},{"full_name":"Lee, Seung-Jae V.","first_name":"Seung-Jae V.","last_name":"Lee"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"chicago":"Park, Sangsoon, Murat Artan, Seung Hyun Han, Hae-Eun H. Park, Yoonji Jung, Ara B. Hwang, Won Sik Shin, Kyong-Tai Kim, and Seung-Jae V. Lee. “VRK-1 Extends Life Span by Activation of AMPK via Phosphorylation.” Science Advances. American Association for the Advancement of Science, 2020. https://doi.org/10.1126/sciadv.aaw7824.","short":"S. Park, M. Artan, S.H. Han, H.-E.H. Park, Y. Jung, A.B. Hwang, W.S. Shin, K.-T. Kim, S.-J.V. Lee, Science Advances 6 (2020).","ama":"Park S, Artan M, Han SH, et al. VRK-1 extends life span by activation of AMPK via phosphorylation. Science Advances. 2020;6(27). doi:10.1126/sciadv.aaw7824","ieee":"S. Park et al., “VRK-1 extends life span by activation of AMPK via phosphorylation,” Science Advances, vol. 6, no. 27. American Association for the Advancement of Science, 2020.","mla":"Park, Sangsoon, et al. “VRK-1 Extends Life Span by Activation of AMPK via Phosphorylation.” Science Advances, vol. 6, no. 27, aaw7824, American Association for the Advancement of Science, 2020, doi:10.1126/sciadv.aaw7824.","apa":"Park, S., Artan, M., Han, S. H., Park, H.-E. H., Jung, Y., Hwang, A. B., … Lee, S.-J. V. (2020). VRK-1 extends life span by activation of AMPK via phosphorylation. Science Advances. American Association for the Advancement of Science. https://doi.org/10.1126/sciadv.aaw7824","ista":"Park S, Artan M, Han SH, Park H-EH, Jung Y, Hwang AB, Shin WS, Kim K-T, Lee S-JV. 2020. VRK-1 extends life span by activation of AMPK via phosphorylation. Science Advances. 6(27), aaw7824."},"has_accepted_license":"1","tmp":{"image":"/images/cc_by_nc.png","short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)"},"date_published":"2020-07-01T00:00:00Z","title":"VRK-1 extends life span by activation of AMPK via phosphorylation","quality_controlled":"1","date_created":"2024-03-04T09:41:57Z","ddc":["570"],"year":"2020","volume":6,"article_processing_charge":"No","publication":"Science Advances","status":"public","publication_identifier":{"eissn":["2375-2548"]},"issue":"27","license":"https://creativecommons.org/licenses/by-nc/4.0/","abstract":[{"lang":"eng","text":"Vaccinia virus–related kinase (VRK) is an evolutionarily conserved nuclear protein kinase. VRK-1, the single Caenorhabditis elegans VRK ortholog, functions in cell division and germline proliferation. However, the role of VRK-1 in postmitotic cells and adult life span remains unknown. Here, we show that VRK-1 increases organismal longevity by activating the cellular energy sensor, AMP-activated protein kinase (AMPK), via direct phosphorylation. We found that overexpression of vrk-1 in the soma of adult C. elegans increased life span and, conversely, inhibition of vrk-1 decreased life span. In addition, vrk-1 was required for longevity conferred by mutations that inhibit C. elegans mitochondrial respiration, which requires AMPK. VRK-1 directly phosphorylated and up-regulated AMPK in both C. elegans and cultured human cells. Thus, our data show that the somatic nuclear kinase, VRK-1, promotes longevity through AMPK activation, and this function appears to be conserved between C. elegans and humans."}],"doi":"10.1126/sciadv.aaw7824","month":"07","publication_status":"published","acknowledgement":"This research was supported by grants NRF-2019R1A3B2067745 and NRF-2017R1A5A1015366 funded by the Korean Government (MSIT) through the National Research Foundation (NRF) of Korea to S.-J.V.L. and by grant Basic Science Research Program (No. 2019R1A2C2009440) funded by the Korean Government (MSIT) through the NRF of Korea to K.-T.K. ","day":"01","publisher":"American Association for the Advancement of Science","intvolume":" 6","article_number":"aaw7824","article_type":"original","language":[{"iso":"eng"}]}]