---
_id: '10619'
abstract:
- lang: eng
  text: The quantum anomalous Hall (QAH) effect combines topology and magnetism to
    produce precisely quantized Hall resistance at zero magnetic field. We report
    the observation of a QAH effect in twisted bilayer graphene aligned to hexagonal
    boron nitride. The effect is driven by intrinsic strong interactions, which polarize
    the electrons into a single spin- and valley-resolved moiré miniband with Chern
    number C = 1. In contrast to magnetically doped systems, the measured transport
    energy gap is larger than the Curie temperature for magnetic ordering, and quantization
    to within 0.1% of the von Klitzing constant persists to temperatures of several
    kelvin at zero magnetic field. Electrical currents as small as 1 nanoampere controllably
    switch the magnetic order between states of opposite polarization, forming an
    electrically rewritable magnetic memory.
acknowledgement: The authors acknowledge discussions with A. Macdonald, Y. Saito,
  and M. Zaletel.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: M.
  full_name: Serlin, M.
  last_name: Serlin
- first_name: C. L.
  full_name: Tschirhart, C. L.
  last_name: Tschirhart
- first_name: Hryhoriy
  full_name: Polshyn, Hryhoriy
  id: edfc7cb1-526e-11ec-b05a-e6ecc27e4e48
  last_name: Polshyn
  orcid: 0000-0001-8223-8896
- first_name: Y.
  full_name: Zhang, Y.
  last_name: Zhang
- first_name: J.
  full_name: Zhu, J.
  last_name: Zhu
- first_name: K.
  full_name: Watanabe, K.
  last_name: Watanabe
- first_name: T.
  full_name: Taniguchi, T.
  last_name: Taniguchi
- first_name: L.
  full_name: Balents, L.
  last_name: Balents
- first_name: A. F.
  full_name: Young, A. F.
  last_name: Young
citation:
  ama: Serlin M, Tschirhart CL, Polshyn H, et al. Intrinsic quantized anomalous Hall
    effect in a moiré heterostructure. <i>Science</i>. 2019;367(6480):900-903. doi:<a
    href="https://doi.org/10.1126/science.aay5533">10.1126/science.aay5533</a>
  apa: Serlin, M., Tschirhart, C. L., Polshyn, H., Zhang, Y., Zhu, J., Watanabe, K.,
    … Young, A. F. (2019). Intrinsic quantized anomalous Hall effect in a moiré heterostructure.
    <i>Science</i>. American Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.aay5533">https://doi.org/10.1126/science.aay5533</a>
  chicago: Serlin, M., C. L. Tschirhart, Hryhoriy Polshyn, Y. Zhang, J. Zhu, K. Watanabe,
    T. Taniguchi, L. Balents, and A. F. Young. “Intrinsic Quantized Anomalous Hall
    Effect in a Moiré Heterostructure.” <i>Science</i>. American Association for the
    Advancement of Science, 2019. <a href="https://doi.org/10.1126/science.aay5533">https://doi.org/10.1126/science.aay5533</a>.
  ieee: M. Serlin <i>et al.</i>, “Intrinsic quantized anomalous Hall effect in a moiré
    heterostructure,” <i>Science</i>, vol. 367, no. 6480. American Association for
    the Advancement of Science, pp. 900–903, 2019.
  ista: Serlin M, Tschirhart CL, Polshyn H, Zhang Y, Zhu J, Watanabe K, Taniguchi
    T, Balents L, Young AF. 2019. Intrinsic quantized anomalous Hall effect in a moiré
    heterostructure. Science. 367(6480), 900–903.
  mla: Serlin, M., et al. “Intrinsic Quantized Anomalous Hall Effect in a Moiré Heterostructure.”
    <i>Science</i>, vol. 367, no. 6480, American Association for the Advancement of
    Science, 2019, pp. 900–03, doi:<a href="https://doi.org/10.1126/science.aay5533">10.1126/science.aay5533</a>.
  short: M. Serlin, C.L. Tschirhart, H. Polshyn, Y. Zhang, J. Zhu, K. Watanabe, T.
    Taniguchi, L. Balents, A.F. Young, Science 367 (2019) 900–903.
date_created: 2022-01-13T14:21:32Z
date_published: 2019-12-19T00:00:00Z
date_updated: 2023-02-21T16:00:09Z
day: '19'
doi: 10.1126/science.aay5533
extern: '1'
external_id:
  arxiv:
  - '1907.00261'
  pmid:
  - '31857492'
intvolume: '       367'
issue: '6480'
keyword:
- multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1907.00261
month: '12'
oa: 1
oa_version: Preprint
page: 900-903
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
related_material:
  record:
  - id: '10697'
    relation: other
    status: public
  - id: '10698'
    relation: other
    status: public
  - id: '10699'
    relation: other
    status: public
scopus_import: '1'
status: public
title: Intrinsic quantized anomalous Hall effect in a moiré heterostructure
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 367
year: '2019'
...
---
_id: '10625'
abstract:
- lang: eng
  text: The discovery of superconductivity and exotic insulating phases in twisted
    bilayer graphene has established this material as a model system of strongly correlated
    electrons. To achieve superconductivity, the two layers of graphene need to be
    at a very precise angle with respect to each other. Yankowitz et al. now show
    that another experimental knob, hydrostatic pressure, can be used to tune the
    phase diagram of twisted bilayer graphene (see the Perspective by Feldman). Applying
    pressure increased the coupling between the layers, which shifted the superconducting
    transition to higher angles and somewhat higher temperatures.
acknowledgement: We thank J. Zhu and H. Zhou for experimental assistance and D. Shahar,
  A. Millis, O. Vafek, M. Zaletel, L. Balents, C. Xu, A. Bernevig, L. Fu, M. Koshino,
  and P. Moon for helpful discussions.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Matthew
  full_name: Yankowitz, Matthew
  last_name: Yankowitz
- first_name: Shaowen
  full_name: Chen, Shaowen
  last_name: Chen
- first_name: Hryhoriy
  full_name: Polshyn, Hryhoriy
  id: edfc7cb1-526e-11ec-b05a-e6ecc27e4e48
  last_name: Polshyn
  orcid: 0000-0001-8223-8896
- first_name: Yuxuan
  full_name: Zhang, Yuxuan
  last_name: Zhang
- first_name: K.
  full_name: Watanabe, K.
  last_name: Watanabe
- first_name: T.
  full_name: Taniguchi, T.
  last_name: Taniguchi
- first_name: David
  full_name: Graf, David
  last_name: Graf
- first_name: Andrea F.
  full_name: Young, Andrea F.
  last_name: Young
- first_name: Cory R.
  full_name: Dean, Cory R.
  last_name: Dean
citation:
  ama: Yankowitz M, Chen S, Polshyn H, et al. Tuning superconductivity in twisted
    bilayer graphene. <i>Science</i>. 2019;363(6431):1059-1064. doi:<a href="https://doi.org/10.1126/science.aav1910">10.1126/science.aav1910</a>
  apa: Yankowitz, M., Chen, S., Polshyn, H., Zhang, Y., Watanabe, K., Taniguchi, T.,
    … Dean, C. R. (2019). Tuning superconductivity in twisted bilayer graphene. <i>Science</i>.
    American Association for the Advancement of Science (AAAS). <a href="https://doi.org/10.1126/science.aav1910">https://doi.org/10.1126/science.aav1910</a>
  chicago: Yankowitz, Matthew, Shaowen Chen, Hryhoriy Polshyn, Yuxuan Zhang, K. Watanabe,
    T. Taniguchi, David Graf, Andrea F. Young, and Cory R. Dean. “Tuning Superconductivity
    in Twisted Bilayer Graphene.” <i>Science</i>. American Association for the Advancement
    of Science (AAAS), 2019. <a href="https://doi.org/10.1126/science.aav1910">https://doi.org/10.1126/science.aav1910</a>.
  ieee: M. Yankowitz <i>et al.</i>, “Tuning superconductivity in twisted bilayer graphene,”
    <i>Science</i>, vol. 363, no. 6431. American Association for the Advancement of
    Science (AAAS), pp. 1059–1064, 2019.
  ista: Yankowitz M, Chen S, Polshyn H, Zhang Y, Watanabe K, Taniguchi T, Graf D,
    Young AF, Dean CR. 2019. Tuning superconductivity in twisted bilayer graphene.
    Science. 363(6431), 1059–1064.
  mla: Yankowitz, Matthew, et al. “Tuning Superconductivity in Twisted Bilayer Graphene.”
    <i>Science</i>, vol. 363, no. 6431, American Association for the Advancement of
    Science (AAAS), 2019, pp. 1059–64, doi:<a href="https://doi.org/10.1126/science.aav1910">10.1126/science.aav1910</a>.
  short: M. Yankowitz, S. Chen, H. Polshyn, Y. Zhang, K. Watanabe, T. Taniguchi, D.
    Graf, A.F. Young, C.R. Dean, Science 363 (2019) 1059–1064.
date_created: 2022-01-14T12:14:58Z
date_published: 2019-01-24T00:00:00Z
date_updated: 2022-01-14T13:48:32Z
day: '24'
doi: 10.1126/science.aav1910
extern: '1'
external_id:
  arxiv:
  - '1808.07865'
  pmid:
  - '30679385 '
intvolume: '       363'
issue: '6431'
keyword:
- multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1808.07865
month: '01'
oa: 1
oa_version: Preprint
page: 1059-1064
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science (AAAS)
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tuning superconductivity in twisted bilayer graphene
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 363
year: '2019'
...
---
_id: '7060'
abstract:
- lang: eng
  text: The anomalous metallic state in the high-temperature superconducting cuprates
    is masked by superconductivity near a quantum critical point. Applying high magnetic
    fields to suppress superconductivity has enabled detailed studies of the normal
    state, yet the direct effect of strong magnetic fields on the metallic state is
    poorly understood. We report the high-field magnetoresistance of thin-film La2–xSrxCuO4
    cuprate in the vicinity of the critical doping, 0.161 ≤ p ≤ 0.190. We find that
    the metallic state exposed by suppressing superconductivity is characterized by
    magnetoresistance that is linear in magnetic fields up to 80 tesla. The magnitude
    of the linear-in-field resistivity mirrors the magnitude and doping evolution
    of the well-known linear-in-temperature resistivity that has been associated with
    quantum criticality in high-temperature superconductors.
article_processing_charge: No
article_type: original
author:
- first_name: P.
  full_name: Giraldo-Gallo, P.
  last_name: Giraldo-Gallo
- first_name: J. A.
  full_name: Galvis, J. A.
  last_name: Galvis
- first_name: Z.
  full_name: Stegen, Z.
  last_name: Stegen
- first_name: Kimberly A
  full_name: Modic, Kimberly A
  id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
  last_name: Modic
  orcid: 0000-0001-9760-3147
- first_name: F. F.
  full_name: Balakirev, F. F.
  last_name: Balakirev
- first_name: J. B.
  full_name: Betts, J. B.
  last_name: Betts
- first_name: X.
  full_name: Lian, X.
  last_name: Lian
- first_name: C.
  full_name: Moir, C.
  last_name: Moir
- first_name: S. C.
  full_name: Riggs, S. C.
  last_name: Riggs
- first_name: J.
  full_name: Wu, J.
  last_name: Wu
- first_name: A. T.
  full_name: Bollinger, A. T.
  last_name: Bollinger
- first_name: X.
  full_name: He, X.
  last_name: He
- first_name: I.
  full_name: Božović, I.
  last_name: Božović
- first_name: B. J.
  full_name: Ramshaw, B. J.
  last_name: Ramshaw
- first_name: R. D.
  full_name: McDonald, R. D.
  last_name: McDonald
- first_name: G. S.
  full_name: Boebinger, G. S.
  last_name: Boebinger
- first_name: A.
  full_name: Shekhter, A.
  last_name: Shekhter
citation:
  ama: Giraldo-Gallo P, Galvis JA, Stegen Z, et al. Scale-invariant magnetoresistance
    in a cuprate superconductor. <i>Science</i>. 2018;361(6401):479-481. doi:<a href="https://doi.org/10.1126/science.aan3178">10.1126/science.aan3178</a>
  apa: Giraldo-Gallo, P., Galvis, J. A., Stegen, Z., Modic, K. A., Balakirev, F. F.,
    Betts, J. B., … Shekhter, A. (2018). Scale-invariant magnetoresistance in a cuprate
    superconductor. <i>Science</i>. AAAS. <a href="https://doi.org/10.1126/science.aan3178">https://doi.org/10.1126/science.aan3178</a>
  chicago: Giraldo-Gallo, P., J. A. Galvis, Z. Stegen, Kimberly A Modic, F. F. Balakirev,
    J. B. Betts, X. Lian, et al. “Scale-Invariant Magnetoresistance in a Cuprate Superconductor.”
    <i>Science</i>. AAAS, 2018. <a href="https://doi.org/10.1126/science.aan3178">https://doi.org/10.1126/science.aan3178</a>.
  ieee: P. Giraldo-Gallo <i>et al.</i>, “Scale-invariant magnetoresistance in a cuprate
    superconductor,” <i>Science</i>, vol. 361, no. 6401. AAAS, pp. 479–481, 2018.
  ista: Giraldo-Gallo P, Galvis JA, Stegen Z, Modic KA, Balakirev FF, Betts JB, Lian
    X, Moir C, Riggs SC, Wu J, Bollinger AT, He X, Božović I, Ramshaw BJ, McDonald
    RD, Boebinger GS, Shekhter A. 2018. Scale-invariant magnetoresistance in a cuprate
    superconductor. Science. 361(6401), 479–481.
  mla: Giraldo-Gallo, P., et al. “Scale-Invariant Magnetoresistance in a Cuprate Superconductor.”
    <i>Science</i>, vol. 361, no. 6401, AAAS, 2018, pp. 479–81, doi:<a href="https://doi.org/10.1126/science.aan3178">10.1126/science.aan3178</a>.
  short: P. Giraldo-Gallo, J.A. Galvis, Z. Stegen, K.A. Modic, F.F. Balakirev, J.B.
    Betts, X. Lian, C. Moir, S.C. Riggs, J. Wu, A.T. Bollinger, X. He, I. Božović,
    B.J. Ramshaw, R.D. McDonald, G.S. Boebinger, A. Shekhter, Science 361 (2018) 479–481.
date_created: 2019-11-19T13:03:16Z
date_published: 2018-08-03T00:00:00Z
date_updated: 2021-01-12T08:11:37Z
day: '03'
doi: 10.1126/science.aan3178
extern: '1'
intvolume: '       361'
issue: '6401'
language:
- iso: eng
month: '08'
oa_version: None
page: 479-481
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: AAAS
quality_controlled: '1'
status: public
title: Scale-invariant magnetoresistance in a cuprate superconductor
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 361
year: '2018'
...
---
_id: '5767'
abstract:
- lang: eng
  text: 'Cuprate superconductors have long been thought of as having strong electronic
    correlations but negligible spin-orbit coupling. Using spin- and angle-resolved
    photoemission spectroscopy, we discovered that one of the most studied cuprate
    superconductors, Bi2212, has a nontrivial spin texture with a spin-momentum locking
    that circles the Brillouin zone center and a spin-layer locking that allows states
    of opposite spin to be localized in different parts of the unit cell. Our findings
    pose challenges for the vast majority of models of cuprates, such as the Hubbard
    model and its variants, where spin-orbit interaction has been mostly neglected,
    and open the intriguing question of how the high-temperature superconducting state
    emerges in the presence of this nontrivial spin texture. '
acknowledgement: ' M.S. was supported by the Gordon and Betty Moore Foundation s EPiQS
  Initiative through grant GBMF4307'
article_processing_charge: No
article_type: original
author:
- first_name: Kenneth
  full_name: Gotlieb, Kenneth
  last_name: Gotlieb
- first_name: Chiu-Yun
  full_name: Lin, Chiu-Yun
  last_name: Lin
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Wentao
  full_name: Zhang, Wentao
  last_name: Zhang
- first_name: Christopher L.
  full_name: Smallwood, Christopher L.
  last_name: Smallwood
- first_name: Christopher
  full_name: Jozwiak, Christopher
  last_name: Jozwiak
- first_name: Hiroshi
  full_name: Eisaki, Hiroshi
  last_name: Eisaki
- first_name: Zahid
  full_name: Hussain, Zahid
  last_name: Hussain
- first_name: Ashvin
  full_name: Vishwanath, Ashvin
  last_name: Vishwanath
- first_name: Alessandra
  full_name: Lanzara, Alessandra
  last_name: Lanzara
citation:
  ama: Gotlieb K, Lin C-Y, Serbyn M, et al. Revealing hidden spin-momentum locking
    in a high-temperature cuprate superconductor. <i>Science</i>. 2018;362(6420):1271-1275.
    doi:<a href="https://doi.org/10.1126/science.aao0980">10.1126/science.aao0980</a>
  apa: Gotlieb, K., Lin, C.-Y., Serbyn, M., Zhang, W., Smallwood, C. L., Jozwiak,
    C., … Lanzara, A. (2018). Revealing hidden spin-momentum locking in a high-temperature
    cuprate superconductor. <i>Science</i>. American Association for the Advancement
    of Science. <a href="https://doi.org/10.1126/science.aao0980">https://doi.org/10.1126/science.aao0980</a>
  chicago: Gotlieb, Kenneth, Chiu-Yun Lin, Maksym Serbyn, Wentao Zhang, Christopher
    L. Smallwood, Christopher Jozwiak, Hiroshi Eisaki, Zahid Hussain, Ashvin Vishwanath,
    and Alessandra Lanzara. “Revealing Hidden Spin-Momentum Locking in a High-Temperature
    Cuprate Superconductor.” <i>Science</i>. American Association for the Advancement
    of Science, 2018. <a href="https://doi.org/10.1126/science.aao0980">https://doi.org/10.1126/science.aao0980</a>.
  ieee: K. Gotlieb <i>et al.</i>, “Revealing hidden spin-momentum locking in a high-temperature
    cuprate superconductor,” <i>Science</i>, vol. 362, no. 6420. American Association
    for the Advancement of Science, pp. 1271–1275, 2018.
  ista: Gotlieb K, Lin C-Y, Serbyn M, Zhang W, Smallwood CL, Jozwiak C, Eisaki H,
    Hussain Z, Vishwanath A, Lanzara A. 2018. Revealing hidden spin-momentum locking
    in a high-temperature cuprate superconductor. Science. 362(6420), 1271–1275.
  mla: Gotlieb, Kenneth, et al. “Revealing Hidden Spin-Momentum Locking in a High-Temperature
    Cuprate Superconductor.” <i>Science</i>, vol. 362, no. 6420, American Association
    for the Advancement of Science, 2018, pp. 1271–75, doi:<a href="https://doi.org/10.1126/science.aao0980">10.1126/science.aao0980</a>.
  short: K. Gotlieb, C.-Y. Lin, M. Serbyn, W. Zhang, C.L. Smallwood, C. Jozwiak, H.
    Eisaki, Z. Hussain, A. Vishwanath, A. Lanzara, Science 362 (2018) 1271–1275.
date_created: 2018-12-19T14:53:50Z
date_published: 2018-12-14T00:00:00Z
date_updated: 2023-09-18T08:11:56Z
day: '14'
department:
- _id: MaSe
doi: 10.1126/science.aao0980
external_id:
  isi:
  - '000452994400048'
intvolume: '       362'
isi: 1
issue: '6420'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1126/science.aao0980
month: '12'
oa: 1
oa_version: Published Version
page: 1271-1275
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Revealing hidden spin-momentum locking in a high-temperature cuprate superconductor
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 362
year: '2018'
...
---
_id: '13381'
abstract:
- lang: eng
  text: Self-assembly of inorganic nanoparticles has been used to prepare hundreds
    of different colloidal crystals, but almost invariably with the restriction that
    the particles must be densely packed. Here, we show that non–close-packed nanoparticle
    arrays can be fabricated through the selective removal of one of two components
    comprising binary nanoparticle superlattices. First, a variety of binary nanoparticle
    superlattices were prepared at the liquid-air interface, including several arrangements
    that were previously unknown. Molecular dynamics simulations revealed the particular
    role of the liquid in templating the formation of superlattices not achievable
    through self-assembly in bulk solution. Second, upon stabilization, all of these
    binary superlattices could be transformed into distinct “nanoallotropes”—nanoporous
    materials having the same chemical composition but differing in their nanoscale
    architectures.
article_processing_charge: No
article_type: original
author:
- first_name: Thumu
  full_name: Udayabhaskararao, Thumu
  last_name: Udayabhaskararao
- first_name: Thomas
  full_name: Altantzis, Thomas
  last_name: Altantzis
- first_name: Lothar
  full_name: Houben, Lothar
  last_name: Houben
- first_name: Marc
  full_name: Coronado-Puchau, Marc
  last_name: Coronado-Puchau
- first_name: Judith
  full_name: Langer, Judith
  last_name: Langer
- first_name: Ronit
  full_name: Popovitz-Biro, Ronit
  last_name: Popovitz-Biro
- first_name: Luis M.
  full_name: Liz-Marzán, Luis M.
  last_name: Liz-Marzán
- first_name: Lela
  full_name: Vuković, Lela
  last_name: Vuković
- first_name: Petr
  full_name: Král, Petr
  last_name: Král
- first_name: Sara
  full_name: Bals, Sara
  last_name: Bals
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
citation:
  ama: Udayabhaskararao T, Altantzis T, Houben L, et al. Tunable porous nanoallotropes
    prepared by post-assembly etching of binary nanoparticle superlattices. <i>Science</i>.
    2017;358(6362):514-518. doi:<a href="https://doi.org/10.1126/science.aan6046">10.1126/science.aan6046</a>
  apa: Udayabhaskararao, T., Altantzis, T., Houben, L., Coronado-Puchau, M., Langer,
    J., Popovitz-Biro, R., … Klajn, R. (2017). Tunable porous nanoallotropes prepared
    by post-assembly etching of binary nanoparticle superlattices. <i>Science</i>.
    American Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.aan6046">https://doi.org/10.1126/science.aan6046</a>
  chicago: Udayabhaskararao, Thumu, Thomas Altantzis, Lothar Houben, Marc Coronado-Puchau,
    Judith Langer, Ronit Popovitz-Biro, Luis M. Liz-Marzán, et al. “Tunable Porous
    Nanoallotropes Prepared by Post-Assembly Etching of Binary Nanoparticle Superlattices.”
    <i>Science</i>. American Association for the Advancement of Science, 2017. <a
    href="https://doi.org/10.1126/science.aan6046">https://doi.org/10.1126/science.aan6046</a>.
  ieee: T. Udayabhaskararao <i>et al.</i>, “Tunable porous nanoallotropes prepared
    by post-assembly etching of binary nanoparticle superlattices,” <i>Science</i>,
    vol. 358, no. 6362. American Association for the Advancement of Science, pp. 514–518,
    2017.
  ista: Udayabhaskararao T, Altantzis T, Houben L, Coronado-Puchau M, Langer J, Popovitz-Biro
    R, Liz-Marzán LM, Vuković L, Král P, Bals S, Klajn R. 2017. Tunable porous nanoallotropes
    prepared by post-assembly etching of binary nanoparticle superlattices. Science.
    358(6362), 514–518.
  mla: Udayabhaskararao, Thumu, et al. “Tunable Porous Nanoallotropes Prepared by
    Post-Assembly Etching of Binary Nanoparticle Superlattices.” <i>Science</i>, vol.
    358, no. 6362, American Association for the Advancement of Science, 2017, pp.
    514–18, doi:<a href="https://doi.org/10.1126/science.aan6046">10.1126/science.aan6046</a>.
  short: T. Udayabhaskararao, T. Altantzis, L. Houben, M. Coronado-Puchau, J. Langer,
    R. Popovitz-Biro, L.M. Liz-Marzán, L. Vuković, P. Král, S. Bals, R. Klajn, Science
    358 (2017) 514–518.
date_created: 2023-08-01T09:41:16Z
date_published: 2017-10-27T00:00:00Z
date_updated: 2023-08-07T11:25:00Z
day: '27'
doi: 10.1126/science.aan6046
extern: '1'
external_id:
  pmid:
  - '29074773'
intvolume: '       358'
issue: '6362'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://repository.uantwerpen.be/docman/irua/8d722e/147242_2018_06_07.pdf
month: '10'
oa: 1
oa_version: Submitted Version
page: 514-518
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tunable porous nanoallotropes prepared by post-assembly etching of binary nanoparticle
  superlattices
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 358
year: '2017'
...
---
_id: '13384'
abstract:
- lang: eng
  text: Although methane is a volatile gas, it can be efficiently trapped in ice,
    which can then be readily set on fire. Beyond the curiosity of this “burning ice,”
    caged methane is of great importance as one of the world's largest natural gas
    resources. In these materials, known as clathrates, methane molecules are tightly
    bound in nanometer-sized, regularly interspaced cages. Other inorganic materials,
    such as the silica mineral chibaite, can similarly encapsulate methane and higher
    hydrocarbons. Simple organic compounds have also been found to trap various organic
    molecules upon crystallization.
article_processing_charge: No
article_type: original
author:
- first_name: Dipak
  full_name: Samanta, Dipak
  last_name: Samanta
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
citation:
  ama: Samanta D, Klajn R. Clathrates grow up. <i>Science</i>. 2017;355(6328):912-912.
    doi:<a href="https://doi.org/10.1126/science.aam7927">10.1126/science.aam7927</a>
  apa: Samanta, D., &#38; Klajn, R. (2017). Clathrates grow up. <i>Science</i>. American
    Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.aam7927">https://doi.org/10.1126/science.aam7927</a>
  chicago: Samanta, Dipak, and Rafal Klajn. “Clathrates Grow Up.” <i>Science</i>.
    American Association for the Advancement of Science, 2017. <a href="https://doi.org/10.1126/science.aam7927">https://doi.org/10.1126/science.aam7927</a>.
  ieee: D. Samanta and R. Klajn, “Clathrates grow up,” <i>Science</i>, vol. 355, no.
    6328. American Association for the Advancement of Science, pp. 912–912, 2017.
  ista: Samanta D, Klajn R. 2017. Clathrates grow up. Science. 355(6328), 912–912.
  mla: Samanta, Dipak, and Rafal Klajn. “Clathrates Grow Up.” <i>Science</i>, vol.
    355, no. 6328, American Association for the Advancement of Science, 2017, pp.
    912–912, doi:<a href="https://doi.org/10.1126/science.aam7927">10.1126/science.aam7927</a>.
  short: D. Samanta, R. Klajn, Science 355 (2017) 912–912.
date_created: 2023-08-01T09:41:55Z
date_published: 2017-03-03T00:00:00Z
date_updated: 2023-08-07T12:23:03Z
day: '03'
doi: 10.1126/science.aam7927
extern: '1'
external_id:
  pmid:
  - '28254902'
intvolume: '       355'
issue: '6328'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '03'
oa_version: None
page: 912-912
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Clathrates grow up
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 355
year: '2017'
...
---
_id: '14008'
abstract:
- lang: eng
  text: Time-resolved x-ray absorption spectroscopy (TR-XAS) has so far practically
    been limited to large-scale facilities, to subpicosecond temporal resolution,
    and to the condensed phase. We report the realization of TR-XAS with a temporal
    resolution in the low femtosecond range by developing a tabletop high-harmonic
    source reaching up to 350 electron volts, thus partially covering the spectral
    region of 280 to 530 electron volts, where water is transmissive. We used this
    source to follow previously unexamined light-induced chemical reactions in the
    lowest electronic states of isolated CF4+ and SF6+ molecules in the gas phase.
    By probing element-specific core-to-valence transitions at the carbon K-edge or
    the sulfur L-edges, we characterized their reaction paths and observed the effect
    of symmetry breaking through the splitting of absorption bands and Rydberg-valence
    mixing induced by the geometry changes.
article_processing_charge: No
article_type: original
author:
- first_name: Yoann
  full_name: Pertot, Yoann
  last_name: Pertot
- first_name: Cédric
  full_name: Schmidt, Cédric
  last_name: Schmidt
- first_name: Mary
  full_name: Matthews, Mary
  last_name: Matthews
- first_name: Adrien
  full_name: Chauvet, Adrien
  last_name: Chauvet
- first_name: Martin
  full_name: Huppert, Martin
  last_name: Huppert
- first_name: Vit
  full_name: Svoboda, Vit
  last_name: Svoboda
- first_name: Aaron
  full_name: von Conta, Aaron
  last_name: von Conta
- first_name: Andres
  full_name: Tehlar, Andres
  last_name: Tehlar
- first_name: Denitsa Rangelova
  full_name: Baykusheva, Denitsa Rangelova
  id: 71b4d059-2a03-11ee-914d-dfa3beed6530
  last_name: Baykusheva
- first_name: Jean-Pierre
  full_name: Wolf, Jean-Pierre
  last_name: Wolf
- first_name: Hans Jakob
  full_name: Wörner, Hans Jakob
  last_name: Wörner
citation:
  ama: Pertot Y, Schmidt C, Matthews M, et al. Time-resolved x-ray absorption spectroscopy
    with a water window high-harmonic source. <i>Science</i>. 2017;355(6322):264-267.
    doi:<a href="https://doi.org/10.1126/science.aah6114">10.1126/science.aah6114</a>
  apa: Pertot, Y., Schmidt, C., Matthews, M., Chauvet, A., Huppert, M., Svoboda, V.,
    … Wörner, H. J. (2017). Time-resolved x-ray absorption spectroscopy with a water
    window high-harmonic source. <i>Science</i>. American Association for the Advancement
    of Science. <a href="https://doi.org/10.1126/science.aah6114">https://doi.org/10.1126/science.aah6114</a>
  chicago: Pertot, Yoann, Cédric Schmidt, Mary Matthews, Adrien Chauvet, Martin Huppert,
    Vit Svoboda, Aaron von Conta, et al. “Time-Resolved x-Ray Absorption Spectroscopy
    with a Water Window High-Harmonic Source.” <i>Science</i>. American Association
    for the Advancement of Science, 2017. <a href="https://doi.org/10.1126/science.aah6114">https://doi.org/10.1126/science.aah6114</a>.
  ieee: Y. Pertot <i>et al.</i>, “Time-resolved x-ray absorption spectroscopy with
    a water window high-harmonic source,” <i>Science</i>, vol. 355, no. 6322. American
    Association for the Advancement of Science, pp. 264–267, 2017.
  ista: Pertot Y, Schmidt C, Matthews M, Chauvet A, Huppert M, Svoboda V, von Conta
    A, Tehlar A, Baykusheva DR, Wolf J-P, Wörner HJ. 2017. Time-resolved x-ray absorption
    spectroscopy with a water window high-harmonic source. Science. 355(6322), 264–267.
  mla: Pertot, Yoann, et al. “Time-Resolved x-Ray Absorption Spectroscopy with a Water
    Window High-Harmonic Source.” <i>Science</i>, vol. 355, no. 6322, American Association
    for the Advancement of Science, 2017, pp. 264–67, doi:<a href="https://doi.org/10.1126/science.aah6114">10.1126/science.aah6114</a>.
  short: Y. Pertot, C. Schmidt, M. Matthews, A. Chauvet, M. Huppert, V. Svoboda, A.
    von Conta, A. Tehlar, D.R. Baykusheva, J.-P. Wolf, H.J. Wörner, Science 355 (2017)
    264–267.
date_created: 2023-08-10T06:36:39Z
date_published: 2017-01-05T00:00:00Z
date_updated: 2023-08-22T08:34:38Z
day: '05'
doi: 10.1126/science.aah6114
extern: '1'
external_id:
  pmid:
  - '28059713'
intvolume: '       355'
issue: '6322'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '01'
oa_version: None
page: 264-267
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Time-resolved x-ray absorption spectroscopy with a water window high-harmonic
  source
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 355
year: '2017'
...
---
_id: '14287'
abstract:
- lang: eng
  text: We describe an approach to bottom-up fabrication that allows integration of
    the functional diversity of proteins into designed three-dimensional structural
    frameworks. A set of custom staple proteins based on transcription activator–like
    effector proteins folds a double-stranded DNA template into a user-defined shape.
    Each staple protein is designed to recognize and closely link two distinct double-helical
    DNA sequences at separate positions on the template. We present design rules for
    constructing megadalton-scale DNA-protein hybrid shapes; introduce various structural
    motifs, such as custom curvature, corners, and vertices; and describe principles
    for creating multilayer DNA-protein objects with enhanced rigidity. We demonstrate
    self-assembly of our hybrid nanostructures in one-pot mixtures that include the
    genetic information for the designed proteins, the template DNA, RNA polymerase,
    ribosomes, and cofactors for transcription and translation.
article_number: eaam5488
article_processing_charge: No
article_type: original
author:
- first_name: Florian M
  full_name: Praetorius, Florian M
  id: dfec9381-4341-11ee-8fd8-faa02bba7d62
  last_name: Praetorius
- first_name: Hendrik
  full_name: Dietz, Hendrik
  last_name: Dietz
citation:
  ama: Praetorius FM, Dietz H. Self-assembly of genetically encoded DNA-protein hybrid
    nanoscale shapes. <i>Science</i>. 2017;355(6331). doi:<a href="https://doi.org/10.1126/science.aam5488">10.1126/science.aam5488</a>
  apa: Praetorius, F. M., &#38; Dietz, H. (2017). Self-assembly of genetically encoded
    DNA-protein hybrid nanoscale shapes. <i>Science</i>. American Association for
    the Advancement of Science. <a href="https://doi.org/10.1126/science.aam5488">https://doi.org/10.1126/science.aam5488</a>
  chicago: Praetorius, Florian M, and Hendrik Dietz. “Self-Assembly of Genetically
    Encoded DNA-Protein Hybrid Nanoscale Shapes.” <i>Science</i>. American Association
    for the Advancement of Science, 2017. <a href="https://doi.org/10.1126/science.aam5488">https://doi.org/10.1126/science.aam5488</a>.
  ieee: F. M. Praetorius and H. Dietz, “Self-assembly of genetically encoded DNA-protein
    hybrid nanoscale shapes,” <i>Science</i>, vol. 355, no. 6331. American Association
    for the Advancement of Science, 2017.
  ista: Praetorius FM, Dietz H. 2017. Self-assembly of genetically encoded DNA-protein
    hybrid nanoscale shapes. Science. 355(6331), eaam5488.
  mla: Praetorius, Florian M., and Hendrik Dietz. “Self-Assembly of Genetically Encoded
    DNA-Protein Hybrid Nanoscale Shapes.” <i>Science</i>, vol. 355, no. 6331, eaam5488,
    American Association for the Advancement of Science, 2017, doi:<a href="https://doi.org/10.1126/science.aam5488">10.1126/science.aam5488</a>.
  short: F.M. Praetorius, H. Dietz, Science 355 (2017).
date_created: 2023-09-06T12:08:55Z
date_published: 2017-03-24T00:00:00Z
date_updated: 2023-11-07T12:33:05Z
day: '24'
doi: 10.1126/science.aam5488
extern: '1'
external_id:
  pmid:
  - '28336611'
intvolume: '       355'
issue: '6331'
language:
- iso: eng
month: '03'
oa_version: None
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Self-assembly of genetically encoded DNA-protein hybrid nanoscale shapes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 355
year: '2017'
...
---
_id: '14013'
abstract:
- lang: eng
  text: The ultrafast motion of electrons and holes after light-matter interaction
    is fundamental to a broad range of chemical and biophysical processes. We advanced
    high-harmonic spectroscopy to resolve spatially and temporally the migration of
    an electron hole immediately after ionization of iodoacetylene while simultaneously
    demonstrating extensive control over the process. A multidimensional approach,
    based on the measurement and accurate theoretical description of both even and
    odd harmonic orders, enabled us to reconstruct both quantum amplitudes and phases
    of the electronic states with a resolution of ~100 attoseconds. We separately
    reconstructed quasi-field-free and laser-controlled charge migration as a function
    of the spatial orientation of the molecule and determined the shape of the hole
    created by ionization. Our technique opens the prospect of laser control over
    electronic primary processes.
article_processing_charge: No
article_type: original
author:
- first_name: P. M.
  full_name: Kraus, P. M.
  last_name: Kraus
- first_name: B.
  full_name: Mignolet, B.
  last_name: Mignolet
- first_name: Denitsa Rangelova
  full_name: Baykusheva, Denitsa Rangelova
  id: 71b4d059-2a03-11ee-914d-dfa3beed6530
  last_name: Baykusheva
- first_name: A.
  full_name: Rupenyan, A.
  last_name: Rupenyan
- first_name: L.
  full_name: Horný, L.
  last_name: Horný
- first_name: E. F.
  full_name: Penka, E. F.
  last_name: Penka
- first_name: G.
  full_name: Grassi, G.
  last_name: Grassi
- first_name: O. I.
  full_name: Tolstikhin, O. I.
  last_name: Tolstikhin
- first_name: J.
  full_name: Schneider, J.
  last_name: Schneider
- first_name: F.
  full_name: Jensen, F.
  last_name: Jensen
- first_name: L. B.
  full_name: Madsen, L. B.
  last_name: Madsen
- first_name: A. D.
  full_name: Bandrauk, A. D.
  last_name: Bandrauk
- first_name: F.
  full_name: Remacle, F.
  last_name: Remacle
- first_name: H. J.
  full_name: Wörner, H. J.
  last_name: Wörner
citation:
  ama: Kraus PM, Mignolet B, Baykusheva DR, et al. Measurement and laser control of
    attosecond charge migration in ionized iodoacetylene. <i>Science</i>. 2015;350(6262):790-795.
    doi:<a href="https://doi.org/10.1126/science.aab2160">10.1126/science.aab2160</a>
  apa: Kraus, P. M., Mignolet, B., Baykusheva, D. R., Rupenyan, A., Horný, L., Penka,
    E. F., … Wörner, H. J. (2015). Measurement and laser control of attosecond charge
    migration in ionized iodoacetylene. <i>Science</i>. American Association for the
    Advancement of Science. <a href="https://doi.org/10.1126/science.aab2160">https://doi.org/10.1126/science.aab2160</a>
  chicago: Kraus, P. M., B. Mignolet, Denitsa Rangelova Baykusheva, A. Rupenyan, L.
    Horný, E. F. Penka, G. Grassi, et al. “Measurement and Laser Control of Attosecond
    Charge Migration in Ionized Iodoacetylene.” <i>Science</i>. American Association
    for the Advancement of Science, 2015. <a href="https://doi.org/10.1126/science.aab2160">https://doi.org/10.1126/science.aab2160</a>.
  ieee: P. M. Kraus <i>et al.</i>, “Measurement and laser control of attosecond charge
    migration in ionized iodoacetylene,” <i>Science</i>, vol. 350, no. 6262. American
    Association for the Advancement of Science, pp. 790–795, 2015.
  ista: Kraus PM, Mignolet B, Baykusheva DR, Rupenyan A, Horný L, Penka EF, Grassi
    G, Tolstikhin OI, Schneider J, Jensen F, Madsen LB, Bandrauk AD, Remacle F, Wörner
    HJ. 2015. Measurement and laser control of attosecond charge migration in ionized
    iodoacetylene. Science. 350(6262), 790–795.
  mla: Kraus, P. M., et al. “Measurement and Laser Control of Attosecond Charge Migration
    in Ionized Iodoacetylene.” <i>Science</i>, vol. 350, no. 6262, American Association
    for the Advancement of Science, 2015, pp. 790–95, doi:<a href="https://doi.org/10.1126/science.aab2160">10.1126/science.aab2160</a>.
  short: P.M. Kraus, B. Mignolet, D.R. Baykusheva, A. Rupenyan, L. Horný, E.F. Penka,
    G. Grassi, O.I. Tolstikhin, J. Schneider, F. Jensen, L.B. Madsen, A.D. Bandrauk,
    F. Remacle, H.J. Wörner, Science 350 (2015) 790–795.
date_created: 2023-08-10T06:37:35Z
date_published: 2015-10-22T00:00:00Z
date_updated: 2023-08-22T08:47:39Z
day: '22'
doi: 10.1126/science.aab2160
extern: '1'
external_id:
  pmid:
  - '26494175'
intvolume: '       350'
issue: '6262'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '10'
oa_version: None
page: 790-795
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Measurement and laser control of attosecond charge migration in ionized iodoacetylene
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 350
year: '2015'
...
---
_id: '13400'
abstract:
- lang: eng
  text: Organizing inorganic nanocrystals into complex architectures is challenging
    and typically relies on preexisting templates, such as properly folded DNA or
    polypeptide chains. We found that under carefully controlled conditions, cubic
    nanocrystals of magnetite self-assemble into arrays of helical superstructures
    in a template-free manner with >99% yield. Computer simulations revealed that
    the formation of helices is determined by the interplay of van der Waals and magnetic
    dipole-dipole interactions, Zeeman coupling, and entropic forces and can be attributed
    to spontaneous formation of chiral nanocube clusters. Neighboring helices within
    their densely packed ensembles tended to adopt the same handedness in order to
    maximize packing, thus revealing a novel mechanism of symmetry breaking and chirality
    amplification.
article_processing_charge: No
article_type: original
author:
- first_name: Gurvinder
  full_name: Singh, Gurvinder
  last_name: Singh
- first_name: Henry
  full_name: Chan, Henry
  last_name: Chan
- first_name: Artem
  full_name: Baskin, Artem
  last_name: Baskin
- first_name: Elijah
  full_name: Gelman, Elijah
  last_name: Gelman
- first_name: Nikita
  full_name: Repnin, Nikita
  last_name: Repnin
- first_name: Petr
  full_name: Král, Petr
  last_name: Král
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
citation:
  ama: Singh G, Chan H, Baskin A, et al. Self-assembly of magnetite nanocubes into
    helical superstructures. <i>Science</i>. 2014;345(6201):1149-1153. doi:<a href="https://doi.org/10.1126/science.1254132">10.1126/science.1254132</a>
  apa: Singh, G., Chan, H., Baskin, A., Gelman, E., Repnin, N., Král, P., &#38; Klajn,
    R. (2014). Self-assembly of magnetite nanocubes into helical superstructures.
    <i>Science</i>. American Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1254132">https://doi.org/10.1126/science.1254132</a>
  chicago: Singh, Gurvinder, Henry Chan, Artem Baskin, Elijah Gelman, Nikita Repnin,
    Petr Král, and Rafal Klajn. “Self-Assembly of Magnetite Nanocubes into Helical
    Superstructures.” <i>Science</i>. American Association for the Advancement of
    Science, 2014. <a href="https://doi.org/10.1126/science.1254132">https://doi.org/10.1126/science.1254132</a>.
  ieee: G. Singh <i>et al.</i>, “Self-assembly of magnetite nanocubes into helical
    superstructures,” <i>Science</i>, vol. 345, no. 6201. American Association for
    the Advancement of Science, pp. 1149–1153, 2014.
  ista: Singh G, Chan H, Baskin A, Gelman E, Repnin N, Král P, Klajn R. 2014. Self-assembly
    of magnetite nanocubes into helical superstructures. Science. 345(6201), 1149–1153.
  mla: Singh, Gurvinder, et al. “Self-Assembly of Magnetite Nanocubes into Helical
    Superstructures.” <i>Science</i>, vol. 345, no. 6201, American Association for
    the Advancement of Science, 2014, pp. 1149–53, doi:<a href="https://doi.org/10.1126/science.1254132">10.1126/science.1254132</a>.
  short: G. Singh, H. Chan, A. Baskin, E. Gelman, N. Repnin, P. Král, R. Klajn, Science
    345 (2014) 1149–1153.
date_created: 2023-08-01T09:45:56Z
date_published: 2014-07-24T00:00:00Z
date_updated: 2023-08-08T07:23:05Z
day: '24'
doi: 10.1126/science.1254132
extern: '1'
external_id:
  pmid:
  - '25061133'
intvolume: '       345'
issue: '6201'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '07'
oa_version: None
page: 1149-1153
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Self-assembly of magnetite nanocubes into helical superstructures
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 345
year: '2014'
...
---
_id: '9055'
abstract:
- lang: eng
  text: Spontaneous formation of colonies of bacteria or flocks of birds are examples
    of self-organization in active living matter. Here, we demonstrate a form of self-organization
    from nonequilibrium driving forces in a suspension of synthetic photoactivated
    colloidal particles. They lead to two-dimensional "living crystals," which form,
    break, explode, and re-form elsewhere. The dynamic assembly results from a competition
    between self-propulsion of particles and an attractive interaction induced respectively
    by osmotic and phoretic effects and activated by light. We measured a transition
    from normal to giant-number fluctuations. Our experiments are quantitatively described
    by simple numerical simulations. We show that the existence of the living crystals
    is intrinsically related to the out-of-equilibrium collisions of the self-propelled
    particles.
article_processing_charge: No
article_type: original
author:
- first_name: Jérémie A
  full_name: Palacci, Jérémie A
  id: 8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d
  last_name: Palacci
  orcid: 0000-0002-7253-9465
- first_name: S.
  full_name: Sacanna, S.
  last_name: Sacanna
- first_name: A. P.
  full_name: Steinberg, A. P.
  last_name: Steinberg
- first_name: D. J.
  full_name: Pine, D. J.
  last_name: Pine
- first_name: P. M.
  full_name: Chaikin, P. M.
  last_name: Chaikin
citation:
  ama: Palacci JA, Sacanna S, Steinberg AP, Pine DJ, Chaikin PM. Living crystals of
    light-activated colloidal surfers. <i>Science</i>. 2013;339(6122):936-940. doi:<a
    href="https://doi.org/10.1126/science.1230020">10.1126/science.1230020</a>
  apa: Palacci, J. A., Sacanna, S., Steinberg, A. P., Pine, D. J., &#38; Chaikin,
    P. M. (2013). Living crystals of light-activated colloidal surfers. <i>Science</i>.
    American Association for the Advancement of Science . <a href="https://doi.org/10.1126/science.1230020">https://doi.org/10.1126/science.1230020</a>
  chicago: Palacci, Jérémie A, S. Sacanna, A. P. Steinberg, D. J. Pine, and P. M.
    Chaikin. “Living Crystals of Light-Activated Colloidal Surfers.” <i>Science</i>.
    American Association for the Advancement of Science , 2013. <a href="https://doi.org/10.1126/science.1230020">https://doi.org/10.1126/science.1230020</a>.
  ieee: J. A. Palacci, S. Sacanna, A. P. Steinberg, D. J. Pine, and P. M. Chaikin,
    “Living crystals of light-activated colloidal surfers,” <i>Science</i>, vol. 339,
    no. 6122. American Association for the Advancement of Science , pp. 936–940, 2013.
  ista: Palacci JA, Sacanna S, Steinberg AP, Pine DJ, Chaikin PM. 2013. Living crystals
    of light-activated colloidal surfers. Science. 339(6122), 936–940.
  mla: Palacci, Jérémie A., et al. “Living Crystals of Light-Activated Colloidal Surfers.”
    <i>Science</i>, vol. 339, no. 6122, American Association for the Advancement of
    Science , 2013, pp. 936–40, doi:<a href="https://doi.org/10.1126/science.1230020">10.1126/science.1230020</a>.
  short: J.A. Palacci, S. Sacanna, A.P. Steinberg, D.J. Pine, P.M. Chaikin, Science
    339 (2013) 936–940.
date_created: 2021-02-01T14:37:29Z
date_published: 2013-02-22T00:00:00Z
date_updated: 2022-08-25T14:57:43Z
day: '22'
doi: 10.1126/science.1230020
extern: '1'
external_id:
  pmid:
  - '23371555'
intvolume: '       339'
issue: '6122'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '02'
oa_version: None
page: 936-940
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: 'American Association for the Advancement of Science '
quality_controlled: '1'
scopus_import: '1'
status: public
title: Living crystals of light-activated colloidal surfers
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 339
year: '2013'
...
---
_id: '11092'
abstract:
- lang: eng
  text: To combat the functional decline of the proteome, cells use the process of
    protein turnover to replace potentially impaired polypeptides with new functional
    copies. We found that extremely long-lived proteins (ELLPs) did not turn over
    in postmitotic cells of the rat central nervous system. These ELLPs were associated
    with chromatin and the nuclear pore complex, the central transport channels that
    mediate all molecular trafficking in and out of the nucleus. The longevity of
    these proteins would be expected to expose them to potentially harmful metabolites,
    putting them at risk of accumulating damage over extended periods of time. Thus,
    it is possible that failure to maintain proper levels and functional integrity
    of ELLPs in nonproliferative cells might contribute to age-related deterioration
    in cell and tissue function.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Jeffrey N.
  full_name: Savas, Jeffrey N.
  last_name: Savas
- first_name: Brandon H.
  full_name: Toyama, Brandon H.
  last_name: Toyama
- first_name: Tao
  full_name: Xu, Tao
  last_name: Xu
- first_name: John R.
  full_name: Yates, John R.
  last_name: Yates
- first_name: Martin W
  full_name: HETZER, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: HETZER
  orcid: 0000-0002-2111-992X
citation:
  ama: Savas JN, Toyama BH, Xu T, Yates JR, Hetzer M. Extremely long-lived nuclear
    pore proteins in the rat brain. <i>Science</i>. 2012;335(6071):942-942. doi:<a
    href="https://doi.org/10.1126/science.1217421">10.1126/science.1217421</a>
  apa: Savas, J. N., Toyama, B. H., Xu, T., Yates, J. R., &#38; Hetzer, M. (2012).
    Extremely long-lived nuclear pore proteins in the rat brain. <i>Science</i>. American
    Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1217421">https://doi.org/10.1126/science.1217421</a>
  chicago: Savas, Jeffrey N., Brandon H. Toyama, Tao Xu, John R. Yates, and Martin
    Hetzer. “Extremely Long-Lived Nuclear Pore Proteins in the Rat Brain.” <i>Science</i>.
    American Association for the Advancement of Science, 2012. <a href="https://doi.org/10.1126/science.1217421">https://doi.org/10.1126/science.1217421</a>.
  ieee: J. N. Savas, B. H. Toyama, T. Xu, J. R. Yates, and M. Hetzer, “Extremely long-lived
    nuclear pore proteins in the rat brain,” <i>Science</i>, vol. 335, no. 6071. American
    Association for the Advancement of Science, pp. 942–942, 2012.
  ista: Savas JN, Toyama BH, Xu T, Yates JR, Hetzer M. 2012. Extremely long-lived
    nuclear pore proteins in the rat brain. Science. 335(6071), 942–942.
  mla: Savas, Jeffrey N., et al. “Extremely Long-Lived Nuclear Pore Proteins in the
    Rat Brain.” <i>Science</i>, vol. 335, no. 6071, American Association for the Advancement
    of Science, 2012, pp. 942–942, doi:<a href="https://doi.org/10.1126/science.1217421">10.1126/science.1217421</a>.
  short: J.N. Savas, B.H. Toyama, T. Xu, J.R. Yates, M. Hetzer, Science 335 (2012)
    942–942.
date_created: 2022-04-07T07:52:01Z
date_published: 2012-02-02T00:00:00Z
date_updated: 2022-07-18T08:53:06Z
day: '02'
doi: 10.1126/science.1217421
extern: '1'
external_id:
  pmid:
  - '22300851'
intvolume: '       335'
issue: '6071'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '02'
oa_version: None
page: 942-942
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Extremely long-lived nuclear pore proteins in the rat brain
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 335
year: '2012'
...
---
_id: '9451'
abstract:
- lang: eng
  text: The Arabidopsis thaliana central cell, the companion cell of the egg, undergoes
    DNA demethylation before fertilization, but the targeting preferences, mechanism,
    and biological significance of this process remain unclear. Here, we show that
    active DNA demethylation mediated by the DEMETER DNA glycosylase accounts for
    all of the demethylation in the central cell and preferentially targets small,
    AT-rich, and nucleosome-depleted euchromatic transposable elements. The vegetative
    cell, the companion cell of sperm, also undergoes DEMETER-dependent demethylation
    of similar sequences, and lack of DEMETER in vegetative cells causes reduced small
    RNA–directed DNA methylation of transposons in sperm. Our results demonstrate
    that demethylation in companion cells reinforces transposon methylation in plant
    gametes and likely contributes to stable silencing of transposable elements across
    generations.
article_processing_charge: No
article_type: original
author:
- first_name: Christian A.
  full_name: Ibarra, Christian A.
  last_name: Ibarra
- first_name: Xiaoqi
  full_name: Feng, Xiaoqi
  last_name: Feng
- first_name: Vera K.
  full_name: Schoft, Vera K.
  last_name: Schoft
- first_name: Tzung-Fu
  full_name: Hsieh, Tzung-Fu
  last_name: Hsieh
- first_name: Rie
  full_name: Uzawa, Rie
  last_name: Uzawa
- first_name: Jessica A.
  full_name: Rodrigues, Jessica A.
  last_name: Rodrigues
- first_name: Assaf
  full_name: Zemach, Assaf
  last_name: Zemach
- first_name: Nina
  full_name: Chumak, Nina
  last_name: Chumak
- first_name: Adriana
  full_name: Machlicova, Adriana
  last_name: Machlicova
- first_name: Toshiro
  full_name: Nishimura, Toshiro
  last_name: Nishimura
- first_name: Denisse
  full_name: Rojas, Denisse
  last_name: Rojas
- first_name: Robert L.
  full_name: Fischer, Robert L.
  last_name: Fischer
- first_name: Hisashi
  full_name: Tamaru, Hisashi
  last_name: Tamaru
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
citation:
  ama: Ibarra CA, Feng X, Schoft VK, et al. Active DNA demethylation in plant companion
    cells reinforces transposon methylation in gametes. <i>Science</i>. 2012;337(6100):1360-1364.
    doi:<a href="https://doi.org/10.1126/science.1224839">10.1126/science.1224839</a>
  apa: Ibarra, C. A., Feng, X., Schoft, V. K., Hsieh, T.-F., Uzawa, R., Rodrigues,
    J. A., … Zilberman, D. (2012). Active DNA demethylation in plant companion cells
    reinforces transposon methylation in gametes. <i>Science</i>. American Association
    for the Advancement of Science. <a href="https://doi.org/10.1126/science.1224839">https://doi.org/10.1126/science.1224839</a>
  chicago: Ibarra, Christian A., Xiaoqi Feng, Vera K. Schoft, Tzung-Fu Hsieh, Rie
    Uzawa, Jessica A. Rodrigues, Assaf Zemach, et al. “Active DNA Demethylation in
    Plant Companion Cells Reinforces Transposon Methylation in Gametes.” <i>Science</i>.
    American Association for the Advancement of Science, 2012. <a href="https://doi.org/10.1126/science.1224839">https://doi.org/10.1126/science.1224839</a>.
  ieee: C. A. Ibarra <i>et al.</i>, “Active DNA demethylation in plant companion cells
    reinforces transposon methylation in gametes,” <i>Science</i>, vol. 337, no. 6100.
    American Association for the Advancement of Science, pp. 1360–1364, 2012.
  ista: Ibarra CA, Feng X, Schoft VK, Hsieh T-F, Uzawa R, Rodrigues JA, Zemach A,
    Chumak N, Machlicova A, Nishimura T, Rojas D, Fischer RL, Tamaru H, Zilberman
    D. 2012. Active DNA demethylation in plant companion cells reinforces transposon
    methylation in gametes. Science. 337(6100), 1360–1364.
  mla: Ibarra, Christian A., et al. “Active DNA Demethylation in Plant Companion Cells
    Reinforces Transposon Methylation in Gametes.” <i>Science</i>, vol. 337, no. 6100,
    American Association for the Advancement of Science, 2012, pp. 1360–64, doi:<a
    href="https://doi.org/10.1126/science.1224839">10.1126/science.1224839</a>.
  short: C.A. Ibarra, X. Feng, V.K. Schoft, T.-F. Hsieh, R. Uzawa, J.A. Rodrigues,
    A. Zemach, N. Chumak, A. Machlicova, T. Nishimura, D. Rojas, R.L. Fischer, H.
    Tamaru, D. Zilberman, Science 337 (2012) 1360–1364.
date_created: 2021-06-04T07:51:31Z
date_published: 2012-09-14T00:00:00Z
date_updated: 2021-12-14T08:28:51Z
day: '14'
ddc:
- '580'
department:
- _id: DaZi
doi: 10.1126/science.1224839
extern: '1'
external_id:
  pmid:
  - '22984074'
has_accepted_license: '1'
intvolume: '       337'
issue: '6100'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4034762/
month: '09'
oa: 1
oa_version: Published Version
page: 1360-1364
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Active DNA demethylation in plant companion cells reinforces transposon methylation
  in gametes
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 337
year: '2012'
...
---
_id: '12198'
abstract:
- lang: eng
  text: The Arabidopsis thaliana central cell, the companion cell of the egg, undergoes
    DNA demethylation before fertilization, but the targeting preferences, mechanism,
    and biological significance of this process remain unclear. Here, we show that
    active DNA demethylation mediated by the DEMETER DNA glycosylase accounts for
    all of the demethylation in the central cell and preferentially targets small,
    AT-rich, and nucleosome-depleted euchromatic transposable elements. The vegetative
    cell, the companion cell of sperm, also undergoes DEMETER-dependent demethylation
    of similar sequences, and lack of DEMETER in vegetative cells causes reduced small
    RNA–directed DNA methylation of transposons in sperm. Our results demonstrate
    that demethylation in companion cells reinforces transposon methylation in plant
    gametes and likely contributes to stable silencing of transposable elements across
    generations.
acknowledgement: We thank S. Harmer for assistance with the analysis of histone modifications,
  the BioOptics team at the Vienna Biocenter Campus for sorting sperm and vegetative
  cell nuclei, K. Slotkin for the LAT52p-amiRNA=GFP plasmid, and G. Drews for the
  DD45p-GFP transgenic line. This work was partially funded by an NIH grant (GM69415)
  to R.L.F., NSF grants (MCB-0918821 and IOS-1025890) to R.L.F. and D.Z., a Young
  Investigator Grant from the Arnold and Mabel Beckman Foundation to D.Z., an Austrian
  Science Fund (FWF) grant P21389-B03 to H.T., a Ruth L. Kirschstein NIH Predoctoral
  Fellowship (GM093633) to C.A.I., a Fulbright Scholarship to J.A.R., a fellowship
  from the Jane Coffin Childs Memorial Fund to A.Z., and a Robert and Colleen Haas
  Scholarship to D.R. Sequencing data are deposited in GEO (GSE38935).
article_processing_charge: No
article_type: original
author:
- first_name: Christian A.
  full_name: Ibarra, Christian A.
  last_name: Ibarra
- first_name: Xiaoqi
  full_name: Feng, Xiaoqi
  id: e0164712-22ee-11ed-b12a-d80fcdf35958
  last_name: Feng
  orcid: 0000-0002-4008-1234
- first_name: Vera K.
  full_name: Schoft, Vera K.
  last_name: Schoft
- first_name: Tzung-Fu
  full_name: Hsieh, Tzung-Fu
  last_name: Hsieh
- first_name: Rie
  full_name: Uzawa, Rie
  last_name: Uzawa
- first_name: Jessica A.
  full_name: Rodrigues, Jessica A.
  last_name: Rodrigues
- first_name: Assaf
  full_name: Zemach, Assaf
  last_name: Zemach
- first_name: Nina
  full_name: Chumak, Nina
  last_name: Chumak
- first_name: Adriana
  full_name: Machlicova, Adriana
  last_name: Machlicova
- first_name: Toshiro
  full_name: Nishimura, Toshiro
  last_name: Nishimura
- first_name: Denisse
  full_name: Rojas, Denisse
  last_name: Rojas
- first_name: Robert L.
  full_name: Fischer, Robert L.
  last_name: Fischer
- first_name: Hisashi
  full_name: Tamaru, Hisashi
  last_name: Tamaru
- first_name: Daniel
  full_name: Zilberman, Daniel
  last_name: Zilberman
citation:
  ama: Ibarra CA, Feng X, Schoft VK, et al. Active DNA demethylation in plant companion
    cells reinforces transposon methylation in gametes. <i>Science</i>. 2012;337(6100):1360-1364.
    doi:<a href="https://doi.org/10.1126/science.1224839">10.1126/science.1224839</a>
  apa: Ibarra, C. A., Feng, X., Schoft, V. K., Hsieh, T.-F., Uzawa, R., Rodrigues,
    J. A., … Zilberman, D. (2012). Active DNA demethylation in plant companion cells
    reinforces transposon methylation in gametes. <i>Science</i>. American Association
    for the Advancement of Science. <a href="https://doi.org/10.1126/science.1224839">https://doi.org/10.1126/science.1224839</a>
  chicago: Ibarra, Christian A., Xiaoqi Feng, Vera K. Schoft, Tzung-Fu Hsieh, Rie
    Uzawa, Jessica A. Rodrigues, Assaf Zemach, et al. “Active DNA Demethylation in
    Plant Companion Cells Reinforces Transposon Methylation in Gametes.” <i>Science</i>.
    American Association for the Advancement of Science, 2012. <a href="https://doi.org/10.1126/science.1224839">https://doi.org/10.1126/science.1224839</a>.
  ieee: C. A. Ibarra <i>et al.</i>, “Active DNA demethylation in plant companion cells
    reinforces transposon methylation in gametes,” <i>Science</i>, vol. 337, no. 6100.
    American Association for the Advancement of Science, pp. 1360–1364, 2012.
  ista: Ibarra CA, Feng X, Schoft VK, Hsieh T-F, Uzawa R, Rodrigues JA, Zemach A,
    Chumak N, Machlicova A, Nishimura T, Rojas D, Fischer RL, Tamaru H, Zilberman
    D. 2012. Active DNA demethylation in plant companion cells reinforces transposon
    methylation in gametes. Science. 337(6100), 1360–1364.
  mla: Ibarra, Christian A., et al. “Active DNA Demethylation in Plant Companion Cells
    Reinforces Transposon Methylation in Gametes.” <i>Science</i>, vol. 337, no. 6100,
    American Association for the Advancement of Science, 2012, pp. 1360–64, doi:<a
    href="https://doi.org/10.1126/science.1224839">10.1126/science.1224839</a>.
  short: C.A. Ibarra, X. Feng, V.K. Schoft, T.-F. Hsieh, R. Uzawa, J.A. Rodrigues,
    A. Zemach, N. Chumak, A. Machlicova, T. Nishimura, D. Rojas, R.L. Fischer, H.
    Tamaru, D. Zilberman, Science 337 (2012) 1360–1364.
date_created: 2023-01-16T09:21:24Z
date_published: 2012-09-14T00:00:00Z
date_updated: 2023-10-16T09:27:26Z
day: '14'
department:
- _id: XiFe
doi: 10.1126/science.1224839
external_id:
  pmid:
  - '22984074'
intvolume: '       337'
issue: '6100'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4034762/
month: '09'
oa: 1
oa_version: Published Version
page: 1360-1364
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Active DNA demethylation in plant companion cells reinforces transposon methylation
  in gametes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 337
year: '2012'
...
---
_id: '9452'
abstract:
- lang: eng
  text: Eukaryotic cytosine methylation represses transcription but also occurs in
    the bodies of active genes, and the extent of methylation biology conservation
    is unclear. We quantified DNA methylation in 17 eukaryotic genomes and found that
    gene body methylation is conserved between plants and animals, whereas selective
    methylation of transposons is not. We show that methylation of plant transposons
    in the CHG context extends to green algae and that exclusion of histone H2A.Z
    from methylated DNA is conserved between plants and animals, and we present evidence
    for RNA-directed DNA methylation of fungal genes. Our data demonstrate that extant
    DNA methylation systems are mosaics of conserved and derived features, and indicate
    that gene body methylation is an ancient property of eukaryotic genomes.
article_processing_charge: No
article_type: original
author:
- first_name: 'Assaf '
  full_name: 'Zemach, Assaf '
  last_name: Zemach
- first_name: Ivy E.
  full_name: McDaniel, Ivy E.
  last_name: McDaniel
- first_name: Pedro
  full_name: Silva, Pedro
  last_name: Silva
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
citation:
  ama: Zemach A, McDaniel IE, Silva P, Zilberman D. Genome-wide evolutionary analysis
    of eukaryotic DNA methylation. <i>Science</i>. 2010;328(5980):916-919. doi:<a
    href="https://doi.org/10.1126/science.1186366">10.1126/science.1186366</a>
  apa: Zemach, A., McDaniel, I. E., Silva, P., &#38; Zilberman, D. (2010). Genome-wide
    evolutionary analysis of eukaryotic DNA methylation. <i>Science</i>. American
    Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1186366">https://doi.org/10.1126/science.1186366</a>
  chicago: Zemach, Assaf , Ivy E. McDaniel, Pedro Silva, and Daniel Zilberman. “Genome-Wide
    Evolutionary Analysis of Eukaryotic DNA Methylation.” <i>Science</i>. American
    Association for the Advancement of Science, 2010. <a href="https://doi.org/10.1126/science.1186366">https://doi.org/10.1126/science.1186366</a>.
  ieee: A. Zemach, I. E. McDaniel, P. Silva, and D. Zilberman, “Genome-wide evolutionary
    analysis of eukaryotic DNA methylation,” <i>Science</i>, vol. 328, no. 5980. American
    Association for the Advancement of Science, pp. 916–919, 2010.
  ista: Zemach A, McDaniel IE, Silva P, Zilberman D. 2010. Genome-wide evolutionary
    analysis of eukaryotic DNA methylation. Science. 328(5980), 916–919.
  mla: Zemach, Assaf, et al. “Genome-Wide Evolutionary Analysis of Eukaryotic DNA
    Methylation.” <i>Science</i>, vol. 328, no. 5980, American Association for the
    Advancement of Science, 2010, pp. 916–19, doi:<a href="https://doi.org/10.1126/science.1186366">10.1126/science.1186366</a>.
  short: A. Zemach, I.E. McDaniel, P. Silva, D. Zilberman, Science 328 (2010) 916–919.
date_created: 2021-06-04T08:26:08Z
date_published: 2010-05-14T00:00:00Z
date_updated: 2021-12-14T08:35:37Z
day: '14'
department:
- _id: DaZi
doi: 10.1126/science.1186366
extern: '1'
external_id:
  pmid:
  - '20395474 '
intvolume: '       328'
issue: '5980'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '05'
oa_version: None
page: 916-919
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Genome-wide evolutionary analysis of eukaryotic DNA methylation
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 328
year: '2010'
...
---
_id: '9453'
abstract:
- lang: eng
  text: Parent-of-origin-specific (imprinted) gene expression is regulated in Arabidopsis
    thaliana endosperm by cytosine demethylation of the maternal genome mediated by
    the DNA glycosylase DEMETER, but the extent of the methylation changes is not
    known. Here, we show that virtually the entire endosperm genome is demethylated,
    coupled with extensive local non-CG hypermethylation of small interfering RNA–targeted
    sequences. Mutation of DEMETER partially restores endosperm CG methylation to
    levels found in other tissues, indicating that CG demethylation is specific to
    maternal sequences. Endosperm demethylation is accompanied by CHH hypermethylation
    of embryo transposable elements. Our findings demonstrate extensive reconfiguration
    of the endosperm methylation landscape that likely reinforces transposon silencing
    in the embryo.
article_processing_charge: No
article_type: original
author:
- first_name: Tzung-Fu
  full_name: Hsieh, Tzung-Fu
  last_name: Hsieh
- first_name: Christian A.
  full_name: Ibarra, Christian A.
  last_name: Ibarra
- first_name: Pedro
  full_name: Silva, Pedro
  last_name: Silva
- first_name: Assaf
  full_name: Zemach, Assaf
  last_name: Zemach
- first_name: Leor
  full_name: Eshed-Williams, Leor
  last_name: Eshed-Williams
- first_name: Robert L.
  full_name: Fischer, Robert L.
  last_name: Fischer
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
citation:
  ama: Hsieh T-F, Ibarra CA, Silva P, et al. Genome-wide demethylation of Arabidopsis
    endosperm. <i>Science</i>. 2009;324(5933):1451-1454. doi:<a href="https://doi.org/10.1126/science.1172417">10.1126/science.1172417</a>
  apa: Hsieh, T.-F., Ibarra, C. A., Silva, P., Zemach, A., Eshed-Williams, L., Fischer,
    R. L., &#38; Zilberman, D. (2009). Genome-wide demethylation of Arabidopsis endosperm.
    <i>Science</i>. American Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1172417">https://doi.org/10.1126/science.1172417</a>
  chicago: Hsieh, Tzung-Fu, Christian A. Ibarra, Pedro Silva, Assaf Zemach, Leor Eshed-Williams,
    Robert L. Fischer, and Daniel Zilberman. “Genome-Wide Demethylation of Arabidopsis
    Endosperm.” <i>Science</i>. American Association for the Advancement of Science,
    2009. <a href="https://doi.org/10.1126/science.1172417">https://doi.org/10.1126/science.1172417</a>.
  ieee: T.-F. Hsieh <i>et al.</i>, “Genome-wide demethylation of Arabidopsis endosperm,”
    <i>Science</i>, vol. 324, no. 5933. American Association for the Advancement of
    Science, pp. 1451–1454, 2009.
  ista: Hsieh T-F, Ibarra CA, Silva P, Zemach A, Eshed-Williams L, Fischer RL, Zilberman
    D. 2009. Genome-wide demethylation of Arabidopsis endosperm. Science. 324(5933),
    1451–1454.
  mla: Hsieh, Tzung-Fu, et al. “Genome-Wide Demethylation of Arabidopsis Endosperm.”
    <i>Science</i>, vol. 324, no. 5933, American Association for the Advancement of
    Science, 2009, pp. 1451–54, doi:<a href="https://doi.org/10.1126/science.1172417">10.1126/science.1172417</a>.
  short: T.-F. Hsieh, C.A. Ibarra, P. Silva, A. Zemach, L. Eshed-Williams, R.L. Fischer,
    D. Zilberman, Science 324 (2009) 1451–1454.
date_created: 2021-06-04T08:55:41Z
date_published: 2009-06-12T00:00:00Z
date_updated: 2021-12-14T08:53:26Z
day: '12'
department:
- _id: DaZi
doi: 10.1126/science.1172417
extern: '1'
external_id:
  pmid:
  - '19520962'
intvolume: '       324'
issue: '5933'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4044190/
month: '06'
oa: 1
oa_version: Submitted Version
page: 1451-1454
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Genome-wide demethylation of Arabidopsis endosperm
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 324
year: '2009'
...
---
_id: '13427'
abstract:
- lang: eng
  text: Deformable, spherical aggregates of metal nanoparticles connected by long-chain
    dithiol ligands self-assemble into nanostructured materials of macroscopic dimensions.
    These materials are plastic and moldable against arbitrarily shaped masters and
    can be thermally hardened into polycrystalline metal structures of controllable
    porosity. In addition, in both plastic and hardened states, the assemblies are
    electrically conductive and exhibit Ohmic characteristics down to ∼20 volts per
    meter. The self-assembly method leading to such materials is applicable both to
    pure metals and to bimetallic structures of various elemental compositions.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Kyle J. M.
  full_name: Bishop, Kyle J. M.
  last_name: Bishop
- first_name: Marcin
  full_name: Fialkowski, Marcin
  last_name: Fialkowski
- first_name: Maciej
  full_name: Paszewski, Maciej
  last_name: Paszewski
- first_name: Christopher J.
  full_name: Campbell, Christopher J.
  last_name: Campbell
- first_name: Timothy P.
  full_name: Gray, Timothy P.
  last_name: Gray
- first_name: Bartosz A.
  full_name: Grzybowski, Bartosz A.
  last_name: Grzybowski
citation:
  ama: Klajn R, Bishop KJM, Fialkowski M, et al. Plastic and moldable metals by self-assembly
    of sticky nanoparticle aggregates. <i>Science</i>. 2007;316(5822):261-264. doi:<a
    href="https://doi.org/10.1126/science.1139131">10.1126/science.1139131</a>
  apa: Klajn, R., Bishop, K. J. M., Fialkowski, M., Paszewski, M., Campbell, C. J.,
    Gray, T. P., &#38; Grzybowski, B. A. (2007). Plastic and moldable metals by self-assembly
    of sticky nanoparticle aggregates. <i>Science</i>. American Association for the
    Advancement of Science. <a href="https://doi.org/10.1126/science.1139131">https://doi.org/10.1126/science.1139131</a>
  chicago: Klajn, Rafal, Kyle J. M. Bishop, Marcin Fialkowski, Maciej Paszewski, Christopher
    J. Campbell, Timothy P. Gray, and Bartosz A. Grzybowski. “Plastic and Moldable
    Metals by Self-Assembly of Sticky Nanoparticle Aggregates.” <i>Science</i>. American
    Association for the Advancement of Science, 2007. <a href="https://doi.org/10.1126/science.1139131">https://doi.org/10.1126/science.1139131</a>.
  ieee: R. Klajn <i>et al.</i>, “Plastic and moldable metals by self-assembly of sticky
    nanoparticle aggregates,” <i>Science</i>, vol. 316, no. 5822. American Association
    for the Advancement of Science, pp. 261–264, 2007.
  ista: Klajn R, Bishop KJM, Fialkowski M, Paszewski M, Campbell CJ, Gray TP, Grzybowski
    BA. 2007. Plastic and moldable metals by self-assembly of sticky nanoparticle
    aggregates. Science. 316(5822), 261–264.
  mla: Klajn, Rafal, et al. “Plastic and Moldable Metals by Self-Assembly of Sticky
    Nanoparticle Aggregates.” <i>Science</i>, vol. 316, no. 5822, American Association
    for the Advancement of Science, 2007, pp. 261–64, doi:<a href="https://doi.org/10.1126/science.1139131">10.1126/science.1139131</a>.
  short: R. Klajn, K.J.M. Bishop, M. Fialkowski, M. Paszewski, C.J. Campbell, T.P.
    Gray, B.A. Grzybowski, Science 316 (2007) 261–264.
date_created: 2023-08-01T10:36:08Z
date_published: 2007-04-13T00:00:00Z
date_updated: 2023-08-08T11:28:29Z
day: '13'
doi: 10.1126/science.1139131
extern: '1'
external_id:
  pmid:
  - '17431176'
intvolume: '       316'
issue: '5822'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '04'
oa_version: None
page: 261-264
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Plastic and moldable metals by self-assembly of sticky nanoparticle aggregates
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 316
year: '2007'
...
---
_id: '11884'
abstract:
- lang: eng
  text: About 20% of the world's population uses the Web, and a large majority thereof
    uses Web search engines to find information. As a result, many Web researchers
    are devoting much effort to improving the speed and capability of search technology.
article_processing_charge: No
article_type: review
author:
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
citation:
  ama: Henzinger MH. Search technologies for the internet. <i>Science</i>. 2007;317(5837):468-471.
    doi:<a href="https://doi.org/10.1126/science.1126557">10.1126/science.1126557</a>
  apa: Henzinger, M. H. (2007). Search technologies for the internet. <i>Science</i>.
    American Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1126557">https://doi.org/10.1126/science.1126557</a>
  chicago: Henzinger, Monika H. “Search Technologies for the Internet.” <i>Science</i>.
    American Association for the Advancement of Science, 2007. <a href="https://doi.org/10.1126/science.1126557">https://doi.org/10.1126/science.1126557</a>.
  ieee: M. H. Henzinger, “Search technologies for the internet,” <i>Science</i>, vol.
    317, no. 5837. American Association for the Advancement of Science, pp. 468–471,
    2007.
  ista: Henzinger MH. 2007. Search technologies for the internet. Science. 317(5837),
    468–471.
  mla: Henzinger, Monika H. “Search Technologies for the Internet.” <i>Science</i>,
    vol. 317, no. 5837, American Association for the Advancement of Science, 2007,
    pp. 468–71, doi:<a href="https://doi.org/10.1126/science.1126557">10.1126/science.1126557</a>.
  short: M.H. Henzinger, Science 317 (2007) 468–471.
date_created: 2022-08-17T07:30:07Z
date_published: 2007-07-27T00:00:00Z
date_updated: 2023-02-17T14:07:49Z
day: '27'
doi: 10.1126/science.1126557
extern: '1'
external_id:
  pmid:
  - '17656714'
intvolume: '       317'
issue: '5837'
language:
- iso: eng
month: '07'
oa_version: None
page: 468-471
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Search technologies for the internet
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 317
year: '2007'
...
---
_id: '9454'
article_processing_charge: No
article_type: original
author:
- first_name: Simon W.-L.
  full_name: Chan, Simon W.-L.
  last_name: Chan
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
- first_name: ' Zhixin'
  full_name: Xie,  Zhixin
  last_name: Xie
- first_name: ' Lisa K.'
  full_name: Johansen,  Lisa K.
  last_name: Johansen
- first_name: James C.
  full_name: Carrington, James C.
  last_name: Carrington
- first_name: Steven E.
  full_name: Jacobsen, Steven E.
  last_name: Jacobsen
citation:
  ama: Chan SW-L, Zilberman D, Xie  Zhixin, Johansen  Lisa K., Carrington JC, Jacobsen
    SE. RNA silencing genes control de novo DNA methylation. <i>Science</i>. 2004;303(5662):1336.
    doi:<a href="https://doi.org/10.1126/science.1095989">10.1126/science.1095989</a>
  apa: Chan, S. W.-L., Zilberman, D., Xie,  Zhixin, Johansen,  Lisa K., Carrington,
    J. C., &#38; Jacobsen, S. E. (2004). RNA silencing genes control de novo DNA methylation.
    <i>Science</i>. American Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1095989">https://doi.org/10.1126/science.1095989</a>
  chicago: Chan, Simon W.-L., Daniel Zilberman,  Zhixin Xie,  Lisa K. Johansen, James
    C. Carrington, and Steven E. Jacobsen. “RNA Silencing Genes Control de Novo DNA
    Methylation.” <i>Science</i>. American Association for the Advancement of Science,
    2004. <a href="https://doi.org/10.1126/science.1095989">https://doi.org/10.1126/science.1095989</a>.
  ieee: S. W.-L. Chan, D. Zilberman,  Zhixin Xie,  Lisa K. Johansen, J. C. Carrington,
    and S. E. Jacobsen, “RNA silencing genes control de novo DNA methylation,” <i>Science</i>,
    vol. 303, no. 5662. American Association for the Advancement of Science, p. 1336,
    2004.
  ista: Chan SW-L, Zilberman D, Xie  Zhixin, Johansen  Lisa K., Carrington JC, Jacobsen
    SE. 2004. RNA silencing genes control de novo DNA methylation. Science. 303(5662),
    1336.
  mla: Chan, Simon W. L., et al. “RNA Silencing Genes Control de Novo DNA Methylation.”
    <i>Science</i>, vol. 303, no. 5662, American Association for the Advancement of
    Science, 2004, p. 1336, doi:<a href="https://doi.org/10.1126/science.1095989">10.1126/science.1095989</a>.
  short: S.W.-L. Chan, D. Zilberman,  Zhixin Xie,  Lisa K. Johansen, J.C. Carrington,
    S.E. Jacobsen, Science 303 (2004) 1336.
date_created: 2021-06-04T11:12:35Z
date_published: 2004-02-27T00:00:00Z
date_updated: 2021-12-14T09:13:53Z
day: '27'
department:
- _id: DaZi
doi: 10.1126/science.1095989
extern: '1'
external_id:
  pmid:
  - '14988555'
intvolume: '       303'
issue: '5662'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '02'
oa_version: None
page: '1336'
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: RNA silencing genes control de novo DNA methylation
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 303
year: '2004'
...
---
_id: '9455'
abstract:
- lang: eng
  text: Proteins of the ARGONAUTE family are important in diverse posttranscriptional
    RNA-mediated gene-silencing systems as well as in transcriptional gene silencing
    in Drosophila and fission yeast and in programmed DNA elimination in Tetrahymena.
    We cloned ARGONAUTE4 (AGO4) from a screen for mutants that suppress silencing
    of the Arabidopsis SUPERMAN(SUP) gene. The ago4-1 mutant reactivated silentSUP
    alleles and decreased CpNpG and asymmetric DNA methylation as well as histone
    H3 lysine-9 methylation. In addition,ago4-1 blocked histone and DNA methylation
    and the accumulation of 25-nucleotide small interfering RNAs (siRNAs) that correspond
    to the retroelement AtSN1. These results suggest that AGO4 and long siRNAs direct
    chromatin modifications, including histone methylation and non-CpG DNA methylation.
article_processing_charge: No
article_type: original
author:
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
- first_name: ' Xiaofeng'
  full_name: Cao,  Xiaofeng
  last_name: Cao
- first_name: Steven E.
  full_name: Jacobsen, Steven E.
  last_name: Jacobsen
citation:
  ama: Zilberman D, Cao  Xiaofeng, Jacobsen SE. ARGONAUTE4 control of locus-specific
    siRNA accumulation and DNA and histone methylation. <i>Science</i>. 2003;299(5607):716-719.
    doi:<a href="https://doi.org/10.1126/science.1079695">10.1126/science.1079695</a>
  apa: Zilberman, D., Cao,  Xiaofeng, &#38; Jacobsen, S. E. (2003). ARGONAUTE4 control
    of locus-specific siRNA accumulation and DNA and histone methylation. <i>Science</i>.
    American Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.1079695">https://doi.org/10.1126/science.1079695</a>
  chicago: Zilberman, Daniel,  Xiaofeng Cao, and Steven E. Jacobsen. “ARGONAUTE4 Control
    of Locus-Specific SiRNA Accumulation and DNA and Histone Methylation.” <i>Science</i>.
    American Association for the Advancement of Science, 2003. <a href="https://doi.org/10.1126/science.1079695">https://doi.org/10.1126/science.1079695</a>.
  ieee: D. Zilberman,  Xiaofeng Cao, and S. E. Jacobsen, “ARGONAUTE4 control of locus-specific
    siRNA accumulation and DNA and histone methylation,” <i>Science</i>, vol. 299,
    no. 5607. American Association for the Advancement of Science, pp. 716–719, 2003.
  ista: Zilberman D, Cao  Xiaofeng, Jacobsen SE. 2003. ARGONAUTE4 control of locus-specific
    siRNA accumulation and DNA and histone methylation. Science. 299(5607), 716–719.
  mla: Zilberman, Daniel, et al. “ARGONAUTE4 Control of Locus-Specific SiRNA Accumulation
    and DNA and Histone Methylation.” <i>Science</i>, vol. 299, no. 5607, American
    Association for the Advancement of Science, 2003, pp. 716–19, doi:<a href="https://doi.org/10.1126/science.1079695">10.1126/science.1079695</a>.
  short: D. Zilberman,  Xiaofeng Cao, S.E. Jacobsen, Science 299 (2003) 716–719.
date_created: 2021-06-04T11:26:26Z
date_published: 2003-01-31T00:00:00Z
date_updated: 2021-12-14T08:43:30Z
day: '31'
department:
- _id: DaZi
doi: 10.1126/science.1079695
extern: '1'
external_id:
  pmid:
  - '12522258'
intvolume: '       299'
issue: '5607'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '01'
oa_version: None
page: 716-719
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone
  methylation
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 299
year: '2003'
...
