---
_id: '3314'
abstract:
- lang: eng
  text: We introduce two-level discounted and mean-payoff games played by two players
    on a perfect-information stochastic game graph. The upper level game is a discounted
    or mean-payoff game and the lower level game is a (undiscounted) reachability
    game. Two-level games model hierarchical and sequential decision making under
    uncertainty across different time scales. For both discounted and mean-payoff
    two-level games, we show the existence of pure memoryless optimal strategies for
    both players and an ordered field property. We show that if there is only one
    player (Markov decision processes), then the values can be computed in polynomial
    time. It follows that whether the value of a player is equal to a given rational
    constant in two-level discounted or mean-payoff games can be decided in NP ∩ coNP.
    We also give an alternate strategy improvement algorithm to compute the value.
    © 2012 World Scientific Publishing Company.
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Ritankar
  full_name: Majumdar, Ritankar
  last_name: Majumdar
citation:
  ama: Chatterjee K, Majumdar R. Discounting and averaging in games across time scales.
    <i>International Journal of Foundations of Computer Science</i>. 2012;23(3):609-625.
    doi:<a href="https://doi.org/10.1142/S0129054112400308">10.1142/S0129054112400308</a>
  apa: Chatterjee, K., &#38; Majumdar, R. (2012). Discounting and averaging in games
    across time scales. <i>International Journal of Foundations of Computer Science</i>.
    World Scientific Publishing. <a href="https://doi.org/10.1142/S0129054112400308">https://doi.org/10.1142/S0129054112400308</a>
  chicago: Chatterjee, Krishnendu, and Ritankar Majumdar. “Discounting and Averaging
    in Games across Time Scales.” <i>International Journal of Foundations of Computer
    Science</i>. World Scientific Publishing, 2012. <a href="https://doi.org/10.1142/S0129054112400308">https://doi.org/10.1142/S0129054112400308</a>.
  ieee: K. Chatterjee and R. Majumdar, “Discounting and averaging in games across
    time scales,” <i>International Journal of Foundations of Computer Science</i>,
    vol. 23, no. 3. World Scientific Publishing, pp. 609–625, 2012.
  ista: Chatterjee K, Majumdar R. 2012. Discounting and averaging in games across
    time scales. International Journal of Foundations of Computer Science. 23(3),
    609–625.
  mla: Chatterjee, Krishnendu, and Ritankar Majumdar. “Discounting and Averaging in
    Games across Time Scales.” <i>International Journal of Foundations of Computer
    Science</i>, vol. 23, no. 3, World Scientific Publishing, 2012, pp. 609–25, doi:<a
    href="https://doi.org/10.1142/S0129054112400308">10.1142/S0129054112400308</a>.
  short: K. Chatterjee, R. Majumdar, International Journal of Foundations of Computer
    Science 23 (2012) 609–625.
date_created: 2018-12-11T12:02:37Z
date_published: 2012-04-01T00:00:00Z
date_updated: 2021-01-12T07:42:35Z
day: '01'
department:
- _id: KrCh
doi: 10.1142/S0129054112400308
intvolume: '        23'
issue: '3'
language:
- iso: eng
month: '04'
oa_version: None
page: 609 - 625
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication: International Journal of Foundations of Computer Science
publication_status: published
publisher: World Scientific Publishing
publist_id: '3326'
quality_controlled: '1'
scopus_import: 1
status: public
title: Discounting and averaging in games across time scales
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2012'
...
---
_id: '10896'
abstract:
- lang: eng
  text: Under physiological conditions the brain, via the purine salvage pathway,
    reuses the preformed purine bases hypoxanthine, derived from ATP degradation,
    and adenine (Ade), derived from polyamine synthesis, to restore its ATP pool.
    However, the massive degradation of ATP during ischemia, although providing valuable
    neuroprotective adenosine, results in the accumulation and loss of diffusible
    purine metabolites and thereby leads to a protracted reduction in the post-ischemic
    ATP pool size. In vivo, this may both limit the ability to deploy ATP-dependent
    reparative mechanisms and reduce the subsequent availability of adenosine, whilst
    in brain slices results in tissue with substantially lower levels of ATP than
    in vivo. In the present review, we describe the mechanisms by which brain tissue
    replenishes its ATP, how this can be improved with the clinically tolerated chemicals
    D-ribose and adenine, and the functional, and potential therapeutic, implications
    of doing so.
acknowledgement: We are grateful to Research into Ageing/Ageing UK and The Dunhill
  Trust for funding SzN’s graduate studies, and to Prof Nicholas Dale for his valuable
  input.
article_processing_charge: No
author:
- first_name: Stephanie
  full_name: zur Nedden, Stephanie
  id: 3C77F464-F248-11E8-B48F-1D18A9856A87
  last_name: zur Nedden
- first_name: Alexander S.
  full_name: Doney, Alexander S.
  last_name: Doney
- first_name: Bruno G.
  full_name: Frenguelli, Bruno G.
  last_name: Frenguelli
citation:
  ama: 'zur Nedden S, Doney AS, Frenguelli BG. The double-edged sword: Gaining Adenosine
    at the expense of ATP. How to balance the books. In: Masino S, Boison D, eds.
    <i>Adenosine</i>. 1st ed. New York: Springer; 2012:109-129. doi:<a href="https://doi.org/10.1007/978-1-4614-3903-5_6">10.1007/978-1-4614-3903-5_6</a>'
  apa: 'zur Nedden, S., Doney, A. S., &#38; Frenguelli, B. G. (2012). The double-edged
    sword: Gaining Adenosine at the expense of ATP. How to balance the books. In S.
    Masino &#38; D. Boison (Eds.), <i>Adenosine</i> (1st ed., pp. 109–129). New York:
    Springer. <a href="https://doi.org/10.1007/978-1-4614-3903-5_6">https://doi.org/10.1007/978-1-4614-3903-5_6</a>'
  chicago: 'Nedden, Stephanie zur, Alexander S. Doney, and Bruno G. Frenguelli. “The
    Double-Edged Sword: Gaining Adenosine at the Expense of ATP. How to Balance the
    Books.” In <i>Adenosine</i>, edited by Susan Masino and Detlev Boison, 1st ed.,
    109–29. New York: Springer, 2012. <a href="https://doi.org/10.1007/978-1-4614-3903-5_6">https://doi.org/10.1007/978-1-4614-3903-5_6</a>.'
  ieee: 'S. zur Nedden, A. S. Doney, and B. G. Frenguelli, “The double-edged sword:
    Gaining Adenosine at the expense of ATP. How to balance the books,” in <i>Adenosine</i>,
    1st ed., S. Masino and D. Boison, Eds. New York: Springer, 2012, pp. 109–129.'
  ista: 'zur Nedden S, Doney AS, Frenguelli BG. 2012.The double-edged sword: Gaining
    Adenosine at the expense of ATP. How to balance the books. In: Adenosine. , 109–129.'
  mla: 'zur Nedden, Stephanie, et al. “The Double-Edged Sword: Gaining Adenosine at
    the Expense of ATP. How to Balance the Books.” <i>Adenosine</i>, edited by Susan
    Masino and Detlev Boison, 1st ed., Springer, 2012, pp. 109–29, doi:<a href="https://doi.org/10.1007/978-1-4614-3903-5_6">10.1007/978-1-4614-3903-5_6</a>.'
  short: S. zur Nedden, A.S. Doney, B.G. Frenguelli, in:, S. Masino, D. Boison (Eds.),
    Adenosine, 1st ed., Springer, New York, 2012, pp. 109–129.
date_created: 2022-03-21T07:16:12Z
date_published: 2012-07-23T00:00:00Z
date_updated: 2022-06-21T11:51:58Z
day: '23'
department:
- _id: HaJa
doi: 10.1007/978-1-4614-3903-5_6
edition: '1'
editor:
- first_name: Susan
  full_name: Masino, Susan
  last_name: Masino
- first_name: Detlev
  full_name: Boison, Detlev
  last_name: Boison
language:
- iso: eng
month: '07'
oa_version: None
page: 109-129
place: New York
publication: Adenosine
publication_identifier:
  eisbn:
  - '9781461439035'
  isbn:
  - '9781461439028'
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance
  the books'
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2012'
...
---
_id: '10903'
abstract:
- lang: eng
  text: We propose a logic-based framework for automated reasoning about sequential
    programs manipulating singly-linked lists and arrays with unbounded data. We introduce
    the logic SLAD, which allows combining shape constraints, written in a fragment
    of Separation Logic, with data and size constraints. We address the problem of
    checking the entailment between SLAD formulas, which is crucial in performing
    pre-post condition reasoning. Although this problem is undecidable in general
    for SLAD, we propose a sound and powerful procedure that is able to solve this
    problem for a large class of formulas, beyond the capabilities of existing techniques
    and tools. We prove that this procedure is complete, i.e., it is actually a decision
    procedure for this problem, for an important fragment of SLAD including known
    decidable logics. We implemented this procedure and shown its preciseness and
    its efficiency on a significant benchmark of formulas.
acknowledgement: This work has been partially supported by the French ANR project
  Veridyc
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Ahmed
  full_name: Bouajjani, Ahmed
  last_name: Bouajjani
- first_name: Cezara
  full_name: Dragoi, Cezara
  id: 2B2B5ED0-F248-11E8-B48F-1D18A9856A87
  last_name: Dragoi
- first_name: Constantin
  full_name: Enea, Constantin
  last_name: Enea
- first_name: Mihaela
  full_name: Sighireanu, Mihaela
  last_name: Sighireanu
citation:
  ama: 'Bouajjani A, Dragoi C, Enea C, Sighireanu M. Accurate invariant checking for
    programs manipulating lists and arrays with infinite data. In: <i>Automated Technology
    for Verification and Analysis</i>. Vol 7561. LNCS. Berlin, Heidelberg: Springer;
    2012:167-182. doi:<a href="https://doi.org/10.1007/978-3-642-33386-6_14">10.1007/978-3-642-33386-6_14</a>'
  apa: 'Bouajjani, A., Dragoi, C., Enea, C., &#38; Sighireanu, M. (2012). Accurate
    invariant checking for programs manipulating lists and arrays with infinite data.
    In <i>Automated Technology for Verification and Analysis</i> (Vol. 7561, pp. 167–182).
    Berlin, Heidelberg: Springer. <a href="https://doi.org/10.1007/978-3-642-33386-6_14">https://doi.org/10.1007/978-3-642-33386-6_14</a>'
  chicago: 'Bouajjani, Ahmed, Cezara Dragoi, Constantin Enea, and Mihaela Sighireanu.
    “Accurate Invariant Checking for Programs Manipulating Lists and Arrays with Infinite
    Data.” In <i>Automated Technology for Verification and Analysis</i>, 7561:167–82.
    LNCS. Berlin, Heidelberg: Springer, 2012. <a href="https://doi.org/10.1007/978-3-642-33386-6_14">https://doi.org/10.1007/978-3-642-33386-6_14</a>.'
  ieee: A. Bouajjani, C. Dragoi, C. Enea, and M. Sighireanu, “Accurate invariant checking
    for programs manipulating lists and arrays with infinite data,” in <i>Automated
    Technology for Verification and Analysis</i>, Thiruvananthapuram, India, 2012,
    vol. 7561, pp. 167–182.
  ista: 'Bouajjani A, Dragoi C, Enea C, Sighireanu M. 2012. Accurate invariant checking
    for programs manipulating lists and arrays with infinite data. Automated Technology
    for Verification and Analysis. ATVA: Automated Technology for Verification and
    AnalysisLNCS, LNCS, vol. 7561, 167–182.'
  mla: Bouajjani, Ahmed, et al. “Accurate Invariant Checking for Programs Manipulating
    Lists and Arrays with Infinite Data.” <i>Automated Technology for Verification
    and Analysis</i>, vol. 7561, Springer, 2012, pp. 167–82, doi:<a href="https://doi.org/10.1007/978-3-642-33386-6_14">10.1007/978-3-642-33386-6_14</a>.
  short: A. Bouajjani, C. Dragoi, C. Enea, M. Sighireanu, in:, Automated Technology
    for Verification and Analysis, Springer, Berlin, Heidelberg, 2012, pp. 167–182.
conference:
  end_date: 2012-10-06
  location: Thiruvananthapuram, India
  name: 'ATVA: Automated Technology for Verification and Analysis'
  start_date: 2012-10-03
date_created: 2022-03-21T07:58:39Z
date_published: 2012-10-15T00:00:00Z
date_updated: 2023-09-05T14:07:24Z
day: '15'
department:
- _id: ToHe
doi: 10.1007/978-3-642-33386-6_14
intvolume: '      7561'
language:
- iso: eng
month: '10'
oa_version: None
page: 167-182
place: Berlin, Heidelberg
publication: Automated Technology for Verification and Analysis
publication_identifier:
  eisbn:
  - '9783642333866'
  eissn:
  - 1611-3349
  isbn:
  - '9783642333859'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
series_title: LNCS
status: public
title: Accurate invariant checking for programs manipulating lists and arrays with
  infinite data
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 7561
year: '2012'
...
---
_id: '10904'
abstract:
- lang: eng
  text: Multi-dimensional mean-payoff and energy games provide the mathematical foundation
    for the quantitative study of reactive systems, and play a central role in the
    emerging quantitative theory of verification and synthesis. In this work, we study
    the strategy synthesis problem for games with such multi-dimensional objectives
    along with a parity condition, a canonical way to express ω-regular conditions.
    While in general, the winning strategies in such games may require infinite memory,
    for synthesis the most relevant problem is the construction of a finite-memory
    winning strategy (if one exists). Our main contributions are as follows. First,
    we show a tight exponential bound (matching upper and lower bounds) on the memory
    required for finite-memory winning strategies in both multi-dimensional mean-payoff
    and energy games along with parity objectives. This significantly improves the
    triple exponential upper bound for multi energy games (without parity) that could
    be derived from results in literature for games on VASS (vector addition systems
    with states). Second, we present an optimal symbolic and incremental algorithm
    to compute a finite-memory winning strategy (if one exists) in such games. Finally,
    we give a complete characterization of when finite memory of strategies can be
    traded off for randomness. In particular, we show that for one-dimension mean-payoff
    parity games, randomized memoryless strategies are as powerful as their pure finite-memory
    counterparts.
acknowledgement: 'Author supported by Austrian Science Fund (FWF) Grant No P 23499-N23,
  FWF NFN Grant No S11407 (RiSE), ERC Start Grant (279307: Graph Games), Microsoft
  faculty fellowship.'
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Mickael
  full_name: Randour, Mickael
  last_name: Randour
- first_name: Jean-François
  full_name: Raskin, Jean-François
  last_name: Raskin
citation:
  ama: 'Chatterjee K, Randour M, Raskin J-F. Strategy synthesis for multi-dimensional
    quantitative objectives. In: Koutny M, Ulidowski I, eds. <i>CONCUR 2012 - Concurrency
    Theory</i>. Vol 7454. Berlin, Heidelberg: Springer; 2012:115-131. doi:<a href="https://doi.org/10.1007/978-3-642-32940-1_10">10.1007/978-3-642-32940-1_10</a>'
  apa: 'Chatterjee, K., Randour, M., &#38; Raskin, J.-F. (2012). Strategy synthesis
    for multi-dimensional quantitative objectives. In M. Koutny &#38; I. Ulidowski
    (Eds.), <i>CONCUR 2012 - Concurrency Theory</i> (Vol. 7454, pp. 115–131). Berlin,
    Heidelberg: Springer. <a href="https://doi.org/10.1007/978-3-642-32940-1_10">https://doi.org/10.1007/978-3-642-32940-1_10</a>'
  chicago: 'Chatterjee, Krishnendu, Mickael Randour, and Jean-François Raskin. “Strategy
    Synthesis for Multi-Dimensional Quantitative Objectives.” In <i>CONCUR 2012 -
    Concurrency Theory</i>, edited by Maciej Koutny and Irek Ulidowski, 7454:115–31.
    Berlin, Heidelberg: Springer, 2012. <a href="https://doi.org/10.1007/978-3-642-32940-1_10">https://doi.org/10.1007/978-3-642-32940-1_10</a>.'
  ieee: K. Chatterjee, M. Randour, and J.-F. Raskin, “Strategy synthesis for multi-dimensional
    quantitative objectives,” in <i>CONCUR 2012 - Concurrency Theory</i>, Newcastle
    upon Tyne, United Kingdom, 2012, vol. 7454, pp. 115–131.
  ista: 'Chatterjee K, Randour M, Raskin J-F. 2012. Strategy synthesis for multi-dimensional
    quantitative objectives. CONCUR 2012 - Concurrency Theory. CONCUR: Conference
    on Concurrency Theory, LNCS, vol. 7454, 115–131.'
  mla: Chatterjee, Krishnendu, et al. “Strategy Synthesis for Multi-Dimensional Quantitative
    Objectives.” <i>CONCUR 2012 - Concurrency Theory</i>, edited by Maciej Koutny
    and Irek Ulidowski, vol. 7454, Springer, 2012, pp. 115–31, doi:<a href="https://doi.org/10.1007/978-3-642-32940-1_10">10.1007/978-3-642-32940-1_10</a>.
  short: K. Chatterjee, M. Randour, J.-F. Raskin, in:, M. Koutny, I. Ulidowski (Eds.),
    CONCUR 2012 - Concurrency Theory, Springer, Berlin, Heidelberg, 2012, pp. 115–131.
conference:
  end_date: 2012-09-07
  location: Newcastle upon Tyne, United Kingdom
  name: 'CONCUR: Conference on Concurrency Theory'
  start_date: 2012-09-04
date_created: 2022-03-21T08:00:21Z
date_published: 2012-09-15T00:00:00Z
date_updated: 2023-02-23T10:55:06Z
day: '15'
department:
- _id: KrCh
doi: 10.1007/978-3-642-32940-1_10
ec_funded: 1
editor:
- first_name: Maciej
  full_name: Koutny, Maciej
  last_name: Koutny
- first_name: Irek
  full_name: Ulidowski, Irek
  last_name: Ulidowski
external_id:
  arxiv:
  - '1201.5073'
intvolume: '      7454'
language:
- iso: eng
month: '09'
oa_version: Preprint
page: 115-131
place: Berlin, Heidelberg
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication: CONCUR 2012 - Concurrency Theory
publication_identifier:
  eisbn:
  - '9783642329401'
  isbn:
  - '9783642329395'
  issn:
  - 0302-9743
  - 1611-3349
publication_status: published
publisher: Springer
quality_controlled: '1'
related_material:
  record:
  - id: '2716'
    relation: later_version
    status: public
scopus_import: '1'
status: public
title: Strategy synthesis for multi-dimensional quantitative objectives
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7454
year: '2012'
...
---
_id: '10905'
abstract:
- lang: eng
  text: "Energy games belong to a class of turn-based two-player infinite-duration
    games played on a weighted directed graph. It is one of the rare and intriguing
    combinatorial problems that lie in NP ∩ co−NP, but are not known to be in P. While
    the existence of polynomial-time algorithms has been a major open problem for
    decades, there is no algorithm that solves any non-trivial subclass in polynomial
    time.\r\nIn this paper, we give several results based on the weight structures
    of the graph. First, we identify a notion of penalty and present a polynomial-time
    algorithm when the penalty is large. Our algorithm is the first polynomial-time
    algorithm on a large class of weighted graphs. It includes several counter examples
    that show that many previous algorithms, such as value iteration and random facet
    algorithms, require at least sub-exponential time. Our main technique is developing
    the first non-trivial approximation algorithm and showing how to convert it to
    an exact algorithm. Moreover, we show that in a practical case in verification
    where weights are clustered around a constant number of values, the energy game
    problem can be solved in polynomial time. We also show that the problem is still
    as hard as in general when the clique-width is bounded or the graph is strongly
    ergodic, suggesting that restricting graph structures need not help."
acknowledgement: 'Supported by the Austrian Science Fund (FWF): P23499-N23, the Austrian
  Science Fund (FWF): S11407-N23 (RiSE), an ERC Start Grant (279307: Graph Games),
  and a Microsoft Faculty Fellows Award'
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Sebastian
  full_name: Krinninger, Sebastian
  last_name: Krinninger
- first_name: Danupon
  full_name: Nanongkai, Danupon
  last_name: Nanongkai
citation:
  ama: 'Chatterjee K, Henzinger MH, Krinninger S, Nanongkai D. Polynomial-time algorithms
    for energy games with special weight structures. In: <i>Algorithms – ESA 2012</i>.
    Vol 7501. Springer; 2012:301-312. doi:<a href="https://doi.org/10.1007/978-3-642-33090-2_27">10.1007/978-3-642-33090-2_27</a>'
  apa: 'Chatterjee, K., Henzinger, M. H., Krinninger, S., &#38; Nanongkai, D. (2012).
    Polynomial-time algorithms for energy games with special weight structures. In
    <i>Algorithms – ESA 2012</i> (Vol. 7501, pp. 301–312). Ljubljana, Slovenia: Springer.
    <a href="https://doi.org/10.1007/978-3-642-33090-2_27">https://doi.org/10.1007/978-3-642-33090-2_27</a>'
  chicago: Chatterjee, Krishnendu, Monika H Henzinger, Sebastian Krinninger, and Danupon
    Nanongkai. “Polynomial-Time Algorithms for Energy Games with Special Weight Structures.”
    In <i>Algorithms – ESA 2012</i>, 7501:301–12. Springer, 2012. <a href="https://doi.org/10.1007/978-3-642-33090-2_27">https://doi.org/10.1007/978-3-642-33090-2_27</a>.
  ieee: K. Chatterjee, M. H. Henzinger, S. Krinninger, and D. Nanongkai, “Polynomial-time
    algorithms for energy games with special weight structures,” in <i>Algorithms
    – ESA 2012</i>, Ljubljana, Slovenia, 2012, vol. 7501, pp. 301–312.
  ista: 'Chatterjee K, Henzinger MH, Krinninger S, Nanongkai D. 2012. Polynomial-time
    algorithms for energy games with special weight structures. Algorithms – ESA 2012.
    ESA: European Symposium on Algorithms, LNCS, vol. 7501, 301–312.'
  mla: Chatterjee, Krishnendu, et al. “Polynomial-Time Algorithms for Energy Games
    with Special Weight Structures.” <i>Algorithms – ESA 2012</i>, vol. 7501, Springer,
    2012, pp. 301–12, doi:<a href="https://doi.org/10.1007/978-3-642-33090-2_27">10.1007/978-3-642-33090-2_27</a>.
  short: K. Chatterjee, M.H. Henzinger, S. Krinninger, D. Nanongkai, in:, Algorithms
    – ESA 2012, Springer, 2012, pp. 301–312.
conference:
  end_date: 2012-09-12
  location: Ljubljana, Slovenia
  name: 'ESA: European Symposium on Algorithms'
  start_date: 2012-09-10
date_created: 2022-03-21T08:01:45Z
date_published: 2012-10-01T00:00:00Z
date_updated: 2023-09-05T14:09:30Z
day: '01'
department:
- _id: KrCh
doi: 10.1007/978-3-642-33090-2_27
ec_funded: 1
external_id:
  arxiv:
  - '1604.08234'
intvolume: '      7501'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1604.08234
month: '10'
oa: 1
oa_version: Preprint
page: 301-312
project:
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication: Algorithms – ESA 2012
publication_identifier:
  eisbn:
  - '9783642330902'
  eissn:
  - 1611-3349
  isbn:
  - '9783642330896'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer
quality_controlled: '1'
related_material:
  record:
  - id: '535'
    relation: later_version
    status: public
scopus_import: '1'
status: public
title: Polynomial-time algorithms for energy games with special weight structures
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 7501
year: '2012'
...
---
_id: '10906'
abstract:
- lang: eng
  text: HSF(C) is a tool that automates verification of safety and liveness properties
    for C programs. This paper describes the verification approach taken by HSF(C)
    and provides instructions on how to install and use the tool.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Sergey
  full_name: Grebenshchikov, Sergey
  last_name: Grebenshchikov
- first_name: Ashutosh
  full_name: Gupta, Ashutosh
  id: 335E5684-F248-11E8-B48F-1D18A9856A87
  last_name: Gupta
- first_name: Nuno P.
  full_name: Lopes, Nuno P.
  last_name: Lopes
- first_name: Corneliu
  full_name: Popeea, Corneliu
  last_name: Popeea
- first_name: Andrey
  full_name: Rybalchenko, Andrey
  last_name: Rybalchenko
citation:
  ama: 'Grebenshchikov S, Gupta A, Lopes NP, Popeea C, Rybalchenko A. HSF(C): A software
    verifier based on Horn clauses. In: Flanagan C, König B, eds. <i>Tools and Algorithms
    for the Construction and Analysis of Systems</i>. Vol 7214. LNCS. Berlin, Heidelberg:
    Springer; 2012:549-551. doi:<a href="https://doi.org/10.1007/978-3-642-28756-5_46">10.1007/978-3-642-28756-5_46</a>'
  apa: 'Grebenshchikov, S., Gupta, A., Lopes, N. P., Popeea, C., &#38; Rybalchenko,
    A. (2012). HSF(C): A software verifier based on Horn clauses. In C. Flanagan &#38;
    B. König (Eds.), <i>Tools and Algorithms for the Construction and Analysis of
    Systems</i> (Vol. 7214, pp. 549–551). Berlin, Heidelberg: Springer. <a href="https://doi.org/10.1007/978-3-642-28756-5_46">https://doi.org/10.1007/978-3-642-28756-5_46</a>'
  chicago: 'Grebenshchikov, Sergey, Ashutosh Gupta, Nuno P. Lopes, Corneliu Popeea,
    and Andrey Rybalchenko. “HSF(C): A Software Verifier Based on Horn Clauses.” In
    <i>Tools and Algorithms for the Construction and Analysis of Systems</i>, edited
    by Cormac Flanagan and Barbara König, 7214:549–51. LNCS. Berlin, Heidelberg: Springer,
    2012. <a href="https://doi.org/10.1007/978-3-642-28756-5_46">https://doi.org/10.1007/978-3-642-28756-5_46</a>.'
  ieee: 'S. Grebenshchikov, A. Gupta, N. P. Lopes, C. Popeea, and A. Rybalchenko,
    “HSF(C): A software verifier based on Horn clauses,” in <i>Tools and Algorithms
    for the Construction and Analysis of Systems</i>, Tallinn, Estonia, 2012, vol.
    7214, pp. 549–551.'
  ista: 'Grebenshchikov S, Gupta A, Lopes NP, Popeea C, Rybalchenko A. 2012. HSF(C):
    A software verifier based on Horn clauses. Tools and Algorithms for the Construction
    and Analysis of Systems. TACAS: Tools and Algorithms for the Construction and
    Analysis of SystemsLNCS, LNCS, vol. 7214, 549–551.'
  mla: 'Grebenshchikov, Sergey, et al. “HSF(C): A Software Verifier Based on Horn
    Clauses.” <i>Tools and Algorithms for the Construction and Analysis of Systems</i>,
    edited by Cormac Flanagan and Barbara König, vol. 7214, Springer, 2012, pp. 549–51,
    doi:<a href="https://doi.org/10.1007/978-3-642-28756-5_46">10.1007/978-3-642-28756-5_46</a>.'
  short: S. Grebenshchikov, A. Gupta, N.P. Lopes, C. Popeea, A. Rybalchenko, in:,
    C. Flanagan, B. König (Eds.), Tools and Algorithms for the Construction and Analysis
    of Systems, Springer, Berlin, Heidelberg, 2012, pp. 549–551.
conference:
  end_date: 2012-04-01
  location: Tallinn, Estonia
  name: 'TACAS: Tools and Algorithms for the Construction and Analysis of Systems'
  start_date: 2012-03-24
date_created: 2022-03-21T08:03:30Z
date_published: 2012-04-01T00:00:00Z
date_updated: 2023-09-05T14:09:54Z
day: '01'
department:
- _id: ToHe
doi: 10.1007/978-3-642-28756-5_46
editor:
- first_name: Cormac
  full_name: Flanagan, Cormac
  last_name: Flanagan
- first_name: Barbara
  full_name: König, Barbara
  last_name: König
intvolume: '      7214'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1007/978-3-642-28756-5_46
month: '04'
oa: 1
oa_version: Published Version
page: 549-551
place: Berlin, Heidelberg
publication: Tools and Algorithms for the Construction and Analysis of Systems
publication_identifier:
  eisbn:
  - '9783642287565'
  eissn:
  - 1611-3349
  isbn:
  - '9783642287558'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
series_title: LNCS
status: public
title: 'HSF(C): A software verifier based on Horn clauses'
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 7214
year: '2012'
...
---
_id: '5387'
abstract:
- lang: eng
  text: We consider Markov Decision Processes (MDPs) with mean-payoff parity and energy
    parity objectives. In system design, the parity objective is used to encode ω-regular
    specifications, and the mean-payoff and energy objectives can be used to model
    quantitative resource constraints. The energy condition re- quires that the resource
    level never drops below 0, and the mean-payoff condi- tion requires that the limit-average
    value of the resource consumption is within a threshold. While these two (energy
    and mean-payoff) classical conditions are equivalent for two-player games, we
    show that they differ for MDPs. We show that the problem of deciding whether a
    state is almost-sure winning (i.e., winning with probability 1) in energy parity
    MDPs is in NP ∩ coNP, while for mean- payoff parity MDPs, the problem is solvable
    in polynomial time, improving a recent PSPACE bound.
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Laurent
  full_name: Doyen, Laurent
  last_name: Doyen
citation:
  ama: Chatterjee K, Doyen L. <i>Energy and Mean-Payoff Parity Markov Decision Processes</i>.
    IST Austria; 2011. doi:<a href="https://doi.org/10.15479/AT:IST-2011-0001">10.15479/AT:IST-2011-0001</a>
  apa: Chatterjee, K., &#38; Doyen, L. (2011). <i>Energy and mean-payoff parity Markov
    decision processes</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2011-0001">https://doi.org/10.15479/AT:IST-2011-0001</a>
  chicago: Chatterjee, Krishnendu, and Laurent Doyen. <i>Energy and Mean-Payoff Parity
    Markov Decision Processes</i>. IST Austria, 2011. <a href="https://doi.org/10.15479/AT:IST-2011-0001">https://doi.org/10.15479/AT:IST-2011-0001</a>.
  ieee: K. Chatterjee and L. Doyen, <i>Energy and mean-payoff parity Markov decision
    processes</i>. IST Austria, 2011.
  ista: Chatterjee K, Doyen L. 2011. Energy and mean-payoff parity Markov decision
    processes, IST Austria, 20p.
  mla: Chatterjee, Krishnendu, and Laurent Doyen. <i>Energy and Mean-Payoff Parity
    Markov Decision Processes</i>. IST Austria, 2011, doi:<a href="https://doi.org/10.15479/AT:IST-2011-0001">10.15479/AT:IST-2011-0001</a>.
  short: K. Chatterjee, L. Doyen, Energy and Mean-Payoff Parity Markov Decision Processes,
    IST Austria, 2011.
date_created: 2018-12-12T11:39:02Z
date_published: 2011-02-16T00:00:00Z
date_updated: 2023-02-23T11:23:11Z
day: '16'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2011-0001
file:
- access_level: open_access
  checksum: 824d6c70e6d3feb3e836b009e0b3cf73
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:52:57Z
  date_updated: 2020-07-14T12:46:41Z
  file_id: '5458'
  file_name: IST-2011-0001_IST-2011-0001.pdf
  file_size: 329976
  relation: main_file
file_date_updated: 2020-07-14T12:46:41Z
has_accepted_license: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: '20'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '23'
related_material:
  record:
  - id: '3345'
    relation: later_version
    status: public
status: public
title: Energy and mean-payoff parity Markov decision processes
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '6496'
abstract:
- lang: eng
  text: We report the switching behavior of the full bacterial flagellum system that
    includes the filament and the motor in wild-type Escherichia coli cells. In sorting
    the motor behavior by the clockwise bias, we find that the distributions of the
    clockwise (CW) and counterclockwise (CCW) intervals are either exponential or
    nonexponential with long tails. At low bias, CW intervals are exponentially distributed
    and CCW intervals exhibit long tails. At intermediate CW bias (0.5) both CW and
    CCW intervals are mainly exponentially distributed. A simple model suggests that
    these two distinct switching behaviors are governed by the presence of signaling
    noise within the chemotaxis network. Low noise yields exponentially distributed
    intervals, whereas large noise yields nonexponential behavior with long tails.
    These drastically different motor statistics may play a role in optimizing bacterial
    behavior for a wide range of environmental conditions.
article_processing_charge: No
author:
- first_name: Heungwon
  full_name: Park, Heungwon
  last_name: Park
- first_name: Panos
  full_name: Oikonomou, Panos
  last_name: Oikonomou
- first_name: Calin C
  full_name: Guet, Calin C
  id: 47F8433E-F248-11E8-B48F-1D18A9856A87
  last_name: Guet
  orcid: 0000-0001-6220-2052
- first_name: Philippe
  full_name: Cluzel, Philippe
  last_name: Cluzel
citation:
  ama: Park H, Oikonomou P, Guet CC, Cluzel P. Noise underlies switching behavior
    of the bacterial flagellum. <i>Biophysical Journal</i>. 2011;101(10):2336-2340.
    doi:<a href="https://doi.org/10.1016/j.bpj.2011.09.040">10.1016/j.bpj.2011.09.040</a>
  apa: Park, H., Oikonomou, P., Guet, C. C., &#38; Cluzel, P. (2011). Noise underlies
    switching behavior of the bacterial flagellum. <i>Biophysical Journal</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.bpj.2011.09.040">https://doi.org/10.1016/j.bpj.2011.09.040</a>
  chicago: Park, Heungwon, Panos Oikonomou, Calin C Guet, and Philippe Cluzel. “Noise
    Underlies Switching Behavior of the Bacterial Flagellum.” <i>Biophysical Journal</i>.
    Elsevier, 2011. <a href="https://doi.org/10.1016/j.bpj.2011.09.040">https://doi.org/10.1016/j.bpj.2011.09.040</a>.
  ieee: H. Park, P. Oikonomou, C. C. Guet, and P. Cluzel, “Noise underlies switching
    behavior of the bacterial flagellum,” <i>Biophysical Journal</i>, vol. 101, no.
    10. Elsevier, pp. 2336–2340, 2011.
  ista: Park H, Oikonomou P, Guet CC, Cluzel P. 2011. Noise underlies switching behavior
    of the bacterial flagellum. Biophysical Journal. 101(10), 2336–2340.
  mla: Park, Heungwon, et al. “Noise Underlies Switching Behavior of the Bacterial
    Flagellum.” <i>Biophysical Journal</i>, vol. 101, no. 10, Elsevier, 2011, pp.
    2336–40, doi:<a href="https://doi.org/10.1016/j.bpj.2011.09.040">10.1016/j.bpj.2011.09.040</a>.
  short: H. Park, P. Oikonomou, C.C. Guet, P. Cluzel, Biophysical Journal 101 (2011)
    2336–2340.
date_created: 2019-05-28T11:54:29Z
date_published: 2011-11-16T00:00:00Z
date_updated: 2021-04-16T11:54:49Z
day: '16'
department:
- _id: CaGu
doi: 10.1016/j.bpj.2011.09.040
external_id:
  pmid:
  - '22098731'
intvolume: '       101'
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3218319/
month: '11'
oa: 1
oa_version: Published Version
page: 2336-2340
pmid: 1
publication: Biophysical Journal
publication_identifier:
  issn:
  - 0006-3495
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Noise underlies switching behavior of the bacterial flagellum
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 101
year: '2011'
...
---
_id: '9483'
abstract:
- lang: eng
  text: Imprinted genes are expressed primarily or exclusively from either the maternal
    or paternal allele, a phenomenon that occurs in flowering plants and mammals.
    Flowering plant imprinted gene expression has been described primarily in endosperm,
    a terminal nutritive tissue consumed by the embryo during seed development or
    after germination. Imprinted expression in Arabidopsis thaliana endosperm is orchestrated
    by differences in cytosine DNA methylation between the paternal and maternal genomes
    as well as by Polycomb group proteins. Currently, only 11 imprinted A. thaliana
    genes are known. Here, we use extensive sequencing of cDNA libraries to identify
    9 paternally expressed and 34 maternally expressed imprinted genes in A. thaliana
    endosperm that are regulated by the DNA-demethylating glycosylase DEMETER, the
    DNA methyltransferase MET1, and/or the core Polycomb group protein FIE. These
    genes encode transcription factors, proteins involved in hormone signaling, components
    of the ubiquitin protein degradation pathway, regulators of histone and DNA methylation,
    and small RNA pathway proteins. We also identify maternally expressed genes that
    may be regulated by unknown mechanisms or deposited from maternal tissues. We
    did not detect any imprinted genes in the embryo. Our results show that imprinted
    gene expression is an extensive mechanistically complex phenomenon that likely
    affects multiple aspects of seed development.
article_processing_charge: No
article_type: original
author:
- first_name: Tzung-Fu
  full_name: Hsieh, Tzung-Fu
  last_name: Hsieh
- first_name: Juhyun
  full_name: Shin, Juhyun
  last_name: Shin
- first_name: Rie
  full_name: Uzawa, Rie
  last_name: Uzawa
- first_name: Pedro
  full_name: Silva, Pedro
  last_name: Silva
- first_name: Stephanie
  full_name: Cohen, Stephanie
  last_name: Cohen
- first_name: Matthew J.
  full_name: Bauer, Matthew J.
  last_name: Bauer
- first_name: Meryl
  full_name: Hashimoto, Meryl
  last_name: Hashimoto
- first_name: Ryan C.
  full_name: Kirkbride, Ryan C.
  last_name: Kirkbride
- first_name: John J.
  full_name: Harada, John J.
  last_name: Harada
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
- first_name: Robert L.
  full_name: Fischer, Robert L.
  last_name: Fischer
citation:
  ama: Hsieh T-F, Shin J, Uzawa R, et al. Regulation of imprinted gene expression
    in Arabidopsis endosperm. <i>Proceedings of the National Academy of Sciences</i>.
    2011;108(5):1755-1762. doi:<a href="https://doi.org/10.1073/pnas.1019273108">10.1073/pnas.1019273108</a>
  apa: Hsieh, T.-F., Shin, J., Uzawa, R., Silva, P., Cohen, S., Bauer, M. J., … Fischer,
    R. L. (2011). Regulation of imprinted gene expression in Arabidopsis endosperm.
    <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences.
    <a href="https://doi.org/10.1073/pnas.1019273108">https://doi.org/10.1073/pnas.1019273108</a>
  chicago: Hsieh, Tzung-Fu, Juhyun Shin, Rie Uzawa, Pedro Silva, Stephanie Cohen,
    Matthew J. Bauer, Meryl Hashimoto, et al. “Regulation of Imprinted Gene Expression
    in Arabidopsis Endosperm.” <i>Proceedings of the National Academy of Sciences</i>.
    National Academy of Sciences, 2011. <a href="https://doi.org/10.1073/pnas.1019273108">https://doi.org/10.1073/pnas.1019273108</a>.
  ieee: T.-F. Hsieh <i>et al.</i>, “Regulation of imprinted gene expression in Arabidopsis
    endosperm,” <i>Proceedings of the National Academy of Sciences</i>, vol. 108,
    no. 5. National Academy of Sciences, pp. 1755–1762, 2011.
  ista: Hsieh T-F, Shin J, Uzawa R, Silva P, Cohen S, Bauer MJ, Hashimoto M, Kirkbride
    RC, Harada JJ, Zilberman D, Fischer RL. 2011. Regulation of imprinted gene expression
    in Arabidopsis endosperm. Proceedings of the National Academy of Sciences. 108(5),
    1755–1762.
  mla: Hsieh, Tzung-Fu, et al. “Regulation of Imprinted Gene Expression in Arabidopsis
    Endosperm.” <i>Proceedings of the National Academy of Sciences</i>, vol. 108,
    no. 5, National Academy of Sciences, 2011, pp. 1755–62, doi:<a href="https://doi.org/10.1073/pnas.1019273108">10.1073/pnas.1019273108</a>.
  short: T.-F. Hsieh, J. Shin, R. Uzawa, P. Silva, S. Cohen, M.J. Bauer, M. Hashimoto,
    R.C. Kirkbride, J.J. Harada, D. Zilberman, R.L. Fischer, Proceedings of the National
    Academy of Sciences 108 (2011) 1755–1762.
date_created: 2021-06-07T07:40:38Z
date_published: 2011-02-01T00:00:00Z
date_updated: 2021-12-14T08:33:49Z
day: '01'
department:
- _id: DaZi
doi: 10.1073/pnas.1019273108
extern: '1'
external_id:
  pmid:
  - '21257907'
intvolume: '       108'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1073/pnas.1019273108
month: '02'
oa: 1
oa_version: Published Version
page: 1755-1762
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
  eissn:
  - 1091-6490
  issn:
  - 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Regulation of imprinted gene expression in Arabidopsis endosperm
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 108
year: '2011'
...
---
_id: '9522'
abstract:
- lang: eng
  text: Little is known about chromatin remodeling events immediately after fertilization.
    A recent report by Autran et al. (2011) in Cell now shows that chromatin regulatory
    pathways that silence transposable elements are responsible for global delayed
    activation of gene expression in the early Arabidopsis embryo.
article_processing_charge: No
author:
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
citation:
  ama: Zilberman D. <i>Balancing Parental Contributions in Plant Embryonic Gene Activation</i>.
    Vol 20. Elsevier; 2011:735-736. doi:<a href="https://doi.org/10.1016/j.devcel.2011.05.018">10.1016/j.devcel.2011.05.018</a>
  apa: Zilberman, D. (2011). <i>Balancing parental contributions in plant embryonic
    gene activation</i>. <i>Developmental Cell</i> (Vol. 20, pp. 735–736). Elsevier.
    <a href="https://doi.org/10.1016/j.devcel.2011.05.018">https://doi.org/10.1016/j.devcel.2011.05.018</a>
  chicago: Zilberman, Daniel. <i>Balancing Parental Contributions in Plant Embryonic
    Gene Activation</i>. <i>Developmental Cell</i>. Vol. 20. Elsevier, 2011. <a href="https://doi.org/10.1016/j.devcel.2011.05.018">https://doi.org/10.1016/j.devcel.2011.05.018</a>.
  ieee: D. Zilberman, <i>Balancing parental contributions in plant embryonic gene
    activation</i>, vol. 20, no. 6. Elsevier, 2011, pp. 735–736.
  ista: Zilberman D. 2011. Balancing parental contributions in plant embryonic gene
    activation, Elsevier,p.
  mla: Zilberman, Daniel. “Balancing Parental Contributions in Plant Embryonic Gene
    Activation.” <i>Developmental Cell</i>, vol. 20, no. 6, Elsevier, 2011, pp. 735–36,
    doi:<a href="https://doi.org/10.1016/j.devcel.2011.05.018">10.1016/j.devcel.2011.05.018</a>.
  short: D. Zilberman, Balancing Parental Contributions in Plant Embryonic Gene Activation,
    Elsevier, 2011.
date_created: 2021-06-08T06:23:39Z
date_published: 2011-06-14T00:00:00Z
date_updated: 2021-12-14T08:34:37Z
day: '14'
department:
- _id: DaZi
doi: 10.1016/j.devcel.2011.05.018
extern: '1'
external_id:
  pmid:
  - '21664571'
intvolume: '        20'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.devcel.2011.05.018
month: '06'
oa: 1
oa_version: Published Version
page: 735-736
pmid: 1
publication: Developmental Cell
publication_identifier:
  eissn:
  - 1878-1551
  issn:
  - 1534-5807
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Balancing parental contributions in plant embryonic gene activation
type: other_academic_publication
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 20
year: '2011'
...
---
_id: '9648'
abstract:
- lang: eng
  text: In this paper, we establish a correspondence between the incremental algorithm
    for computing AT-models [8,9] and the one for computing persistent homology [6,14,15].
    We also present a decremental algorithm for computing AT-models that allows to
    extend the persistence computation to a wider setting. Finally, we show how to
    combine incremental and decremental techniques for persistent homology computation.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Rocio
  full_name: Gonzalez-Diaz, Rocio
  last_name: Gonzalez-Diaz
- first_name: Adrian
  full_name: Ion, Adrian
  id: 29F89302-F248-11E8-B48F-1D18A9856A87
  last_name: Ion
- first_name: Maria Jose
  full_name: Jimenez, Maria Jose
  last_name: Jimenez
- first_name: Regina
  full_name: Poyatos, Regina
  last_name: Poyatos
citation:
  ama: 'Gonzalez-Diaz R, Ion A, Jimenez MJ, Poyatos R. Incremental-decremental algorithm
    for computing AT-models and persistent homology. In: <i>Computer Analysis of Images
    and Patterns</i>. Vol 6854. Springer Nature; 2011:286-293. doi:<a href="https://doi.org/10.1007/978-3-642-23672-3_35">10.1007/978-3-642-23672-3_35</a>'
  apa: 'Gonzalez-Diaz, R., Ion, A., Jimenez, M. J., &#38; Poyatos, R. (2011). Incremental-decremental
    algorithm for computing AT-models and persistent homology. In <i>Computer Analysis
    of Images and Patterns</i> (Vol. 6854, pp. 286–293). Seville, Spain: Springer
    Nature. <a href="https://doi.org/10.1007/978-3-642-23672-3_35">https://doi.org/10.1007/978-3-642-23672-3_35</a>'
  chicago: Gonzalez-Diaz, Rocio, Adrian Ion, Maria Jose Jimenez, and Regina Poyatos.
    “Incremental-Decremental Algorithm for Computing AT-Models and Persistent Homology.”
    In <i>Computer Analysis of Images and Patterns</i>, 6854:286–93. Springer Nature,
    2011. <a href="https://doi.org/10.1007/978-3-642-23672-3_35">https://doi.org/10.1007/978-3-642-23672-3_35</a>.
  ieee: R. Gonzalez-Diaz, A. Ion, M. J. Jimenez, and R. Poyatos, “Incremental-decremental
    algorithm for computing AT-models and persistent homology,” in <i>Computer Analysis
    of Images and Patterns</i>, Seville, Spain, 2011, vol. 6854, pp. 286–293.
  ista: 'Gonzalez-Diaz R, Ion A, Jimenez MJ, Poyatos R. 2011. Incremental-decremental
    algorithm for computing AT-models and persistent homology. Computer Analysis of
    Images and Patterns. CAIP: International Conference on Computer Analysis of Images
    and Patterns, LNCS, vol. 6854, 286–293.'
  mla: Gonzalez-Diaz, Rocio, et al. “Incremental-Decremental Algorithm for Computing
    AT-Models and Persistent Homology.” <i>Computer Analysis of Images and Patterns</i>,
    vol. 6854, Springer Nature, 2011, pp. 286–93, doi:<a href="https://doi.org/10.1007/978-3-642-23672-3_35">10.1007/978-3-642-23672-3_35</a>.
  short: R. Gonzalez-Diaz, A. Ion, M.J. Jimenez, R. Poyatos, in:, Computer Analysis
    of Images and Patterns, Springer Nature, 2011, pp. 286–293.
conference:
  end_date: 2011-08-31
  location: Seville, Spain
  name: 'CAIP: International Conference on Computer Analysis of Images and Patterns'
  start_date: 2011-08-29
date_created: 2021-07-11T22:01:19Z
date_published: 2011-08-01T00:00:00Z
date_updated: 2021-08-12T13:53:17Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/978-3-642-23672-3_35
intvolume: '      6854'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://hdl.handle.net/11441/30766
month: '08'
oa: 1
oa_version: Published Version
page: 286-293
publication: Computer Analysis of Images and Patterns
publication_identifier:
  eissn:
  - '16113349'
  isbn:
  - '9783642236716'
  issn:
  - '03029743'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Incremental-decremental algorithm for computing AT-models and persistent homology
type: conference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 6854
year: '2011'
...
---
_id: '9762'
abstract:
- lang: eng
  text: Defining population structure and genetic diversity levels is of the utmost
    importance for developing efficient conservation strategies. Overfishing has caused
    mean annual catches of the European spiny lobster (Palinurus elephas) to decrease
    alarmingly along its distribution area. In this context, there is a need for comprehensive
    studies to evaluate the genetic health of the exploited populations. The present
    work is based on a set of 10 nuclear markers amplified in 331 individuals from
    10 different localities covering most of P. elephas distribution area. Samples
    from Atlantic and Mediterranean basins showed small but significant differences,
    indicating that P. elephas populations do not behave as a single panmictic unit
    but form two partially-overlapping groups. Despite intense overfishing, our dataset
    did not recover a recent bottleneck signal, and showed a large and stable historical
    effective size instead. This result could be accounted for by specific life history
    traits (reproduction and longevity) and the limitations of molecular markers in
    covering very recent timescales for non temporal samples. Our study emphasizes
    the necessity of integrating information on effective population sizes and life
    history parameters when evaluating population connectivity levels from genetic
    data.
article_processing_charge: No
author:
- first_name: Ferran
  full_name: Palero, Ferran
  id: 3F0E2A22-F248-11E8-B48F-1D18A9856A87
  last_name: Palero
  orcid: 0000-0002-0343-8329
- first_name: Pere
  full_name: Abello, Pere
  last_name: Abello
- first_name: Enrique
  full_name: Macpherson, Enrique
  last_name: Macpherson
- first_name: Mark
  full_name: Beaumont, Mark
  last_name: Beaumont
- first_name: Marta
  full_name: Pascual, Marta
  last_name: Pascual
citation:
  ama: 'Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. Data from: Effect
    of oceanographic barriers and overfishing on the population genetic structure
    of the European spiny lobster (Palinurus elephas). 2011. doi:<a href="https://doi.org/10.5061/dryad.299h8">10.5061/dryad.299h8</a>'
  apa: 'Palero, F., Abello, P., Macpherson, E., Beaumont, M., &#38; Pascual, M. (2011).
    Data from: Effect of oceanographic barriers and overfishing on the population
    genetic structure of the European spiny lobster (Palinurus elephas). IST Austria.
    <a href="https://doi.org/10.5061/dryad.299h8">https://doi.org/10.5061/dryad.299h8</a>'
  chicago: 'Palero, Ferran, Pere Abello, Enrique Macpherson, Mark Beaumont, and Marta
    Pascual. “Data from: Effect of Oceanographic Barriers and Overfishing on the Population
    Genetic Structure of the European Spiny Lobster (Palinurus Elephas).” IST Austria,
    2011. <a href="https://doi.org/10.5061/dryad.299h8">https://doi.org/10.5061/dryad.299h8</a>.'
  ieee: 'F. Palero, P. Abello, E. Macpherson, M. Beaumont, and M. Pascual, “Data from:
    Effect of oceanographic barriers and overfishing on the population genetic structure
    of the European spiny lobster (Palinurus elephas).” IST Austria, 2011.'
  ista: 'Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. 2011. Data from:
    Effect of oceanographic barriers and overfishing on the population genetic structure
    of the European spiny lobster (Palinurus elephas), IST Austria, <a href="https://doi.org/10.5061/dryad.299h8">10.5061/dryad.299h8</a>.'
  mla: 'Palero, Ferran, et al. <i>Data from: Effect of Oceanographic Barriers and
    Overfishing on the Population Genetic Structure of the European Spiny Lobster
    (Palinurus Elephas)</i>. IST Austria, 2011, doi:<a href="https://doi.org/10.5061/dryad.299h8">10.5061/dryad.299h8</a>.'
  short: F. Palero, P. Abello, E. Macpherson, M. Beaumont, M. Pascual, (2011).
date_created: 2021-08-02T07:11:19Z
date_published: 2011-05-12T00:00:00Z
date_updated: 2023-02-23T11:25:25Z
day: '12'
department:
- _id: NiBa
doi: 10.5061/dryad.299h8
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.299h8
month: '05'
oa: 1
oa_version: Published Version
publisher: IST Austria
related_material:
  record:
  - id: '3395'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: Effect of oceanographic barriers and overfishing on the population
  genetic structure of the European spiny lobster (Palinurus elephas)'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2011'
...
---
_id: '3318'
abstract:
- lang: eng
  text: Parvalbumin is thought to act in a manner similar to EGTA, but how a slow
    Ca2+ buffer affects nanodomain-coupling regimes at GABAergic synapses is unclear.
    Direct measurements of parvalbumin concentration and paired recordings in rodent
    hippocampus and cerebellum revealed that parvalbumin affects synaptic dynamics
    only when expressed at high levels. Modeling suggests that, in high concentrations,
    parvalbumin may exert BAPTA-like effects, modulating nanodomain coupling via competition
    with local saturation of endogenous fixed buffers.
author:
- first_name: Emmanuel
  full_name: Eggermann, Emmanuel
  last_name: Eggermann
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
citation:
  ama: Eggermann E, Jonas PM. How the “slow” Ca(2+) buffer parvalbumin affects transmitter
    release in nanodomain coupling regimes at GABAergic synapses. <i>Nature Neuroscience</i>.
    2011;15:20-22. doi:<a href="https://doi.org/10.1038/nn.3002">10.1038/nn.3002</a>
  apa: Eggermann, E., &#38; Jonas, P. M. (2011). How the “slow” Ca(2+) buffer parvalbumin
    affects transmitter release in nanodomain coupling regimes at GABAergic synapses.
    <i>Nature Neuroscience</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/nn.3002">https://doi.org/10.1038/nn.3002</a>
  chicago: Eggermann, Emmanuel, and Peter M Jonas. “How the ‘Slow’ Ca(2+) Buffer Parvalbumin
    Affects Transmitter Release in Nanodomain Coupling Regimes at GABAergic Synapses.”
    <i>Nature Neuroscience</i>. Nature Publishing Group, 2011. <a href="https://doi.org/10.1038/nn.3002">https://doi.org/10.1038/nn.3002</a>.
  ieee: E. Eggermann and P. M. Jonas, “How the ‘slow’ Ca(2+) buffer parvalbumin affects
    transmitter release in nanodomain coupling regimes at GABAergic synapses,” <i>Nature
    Neuroscience</i>, vol. 15. Nature Publishing Group, pp. 20–22, 2011.
  ista: Eggermann E, Jonas PM. 2011. How the “slow” Ca(2+) buffer parvalbumin affects
    transmitter release in nanodomain coupling regimes at GABAergic synapses. Nature
    Neuroscience. 15, 20–22.
  mla: Eggermann, Emmanuel, and Peter M. Jonas. “How the ‘Slow’ Ca(2+) Buffer Parvalbumin
    Affects Transmitter Release in Nanodomain Coupling Regimes at GABAergic Synapses.”
    <i>Nature Neuroscience</i>, vol. 15, Nature Publishing Group, 2011, pp. 20–22,
    doi:<a href="https://doi.org/10.1038/nn.3002">10.1038/nn.3002</a>.
  short: E. Eggermann, P.M. Jonas, Nature Neuroscience 15 (2011) 20–22.
date_created: 2018-12-11T12:02:38Z
date_published: 2011-12-04T00:00:00Z
date_updated: 2021-01-12T07:42:37Z
day: '04'
department:
- _id: PeJo
doi: 10.1038/nn.3002
intvolume: '        15'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3631701/
month: '12'
oa: 1
oa_version: Submitted Version
page: 20 - 22
publication: Nature Neuroscience
publication_status: published
publisher: Nature Publishing Group
publist_id: '3321'
quality_controlled: '1'
scopus_import: 1
status: public
title: How the “slow” Ca(2+) buffer parvalbumin affects transmitter release in nanodomain
  coupling regimes at GABAergic synapses
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2011'
...
---
_id: '3319'
abstract:
- lang: eng
  text: We address the problem of metric learning for multi-view data, namely the
    construction of embedding projections from data in different representations into
    a shared feature space, such that the Euclidean distance in this space provides
    a meaningful within-view as well as between-view similarity. Our motivation stems
    from the problem of cross-media retrieval tasks, where the availability of a joint
    Euclidean distance function is a pre-requisite to allow fast, in particular hashing-based,
    nearest neighbor queries. We formulate an objective function that expresses the
    intuitive concept that matching samples are mapped closely together in the output
    space, whereas non-matching samples are pushed apart, no matter in which view
    they are available. The resulting optimization problem is not convex, but it can
    be decomposed explicitly into a convex and a concave part, thereby allowing efficient
    optimization using the convex-concave procedure. Experiments on an image retrieval
    task show that nearest-neighbor based cross-view retrieval is indeed possible,
    and the proposed technique improves the retrieval accuracy over baseline techniques.
article_processing_charge: No
author:
- first_name: Novi
  full_name: Quadrianto, Novi
  last_name: Quadrianto
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Quadrianto N, Lampert C. Learning multi-view neighborhood preserving projections.
    In: ML Research Press; 2011:425-432.'
  apa: 'Quadrianto, N., &#38; Lampert, C. (2011). Learning multi-view neighborhood
    preserving projections (pp. 425–432). Presented at the ICML: International Conference
    on Machine Learning, Bellevue, United States: ML Research Press.'
  chicago: Quadrianto, Novi, and Christoph Lampert. “Learning Multi-View Neighborhood
    Preserving Projections,” 425–32. ML Research Press, 2011.
  ieee: 'N. Quadrianto and C. Lampert, “Learning multi-view neighborhood preserving
    projections,” presented at the ICML: International Conference on Machine Learning,
    Bellevue, United States, 2011, pp. 425–432.'
  ista: 'Quadrianto N, Lampert C. 2011. Learning multi-view neighborhood preserving
    projections. ICML: International Conference on Machine Learning, 425–432.'
  mla: Quadrianto, Novi, and Christoph Lampert. <i>Learning Multi-View Neighborhood
    Preserving Projections</i>. ML Research Press, 2011, pp. 425–32.
  short: N. Quadrianto, C. Lampert, in:, ML Research Press, 2011, pp. 425–432.
conference:
  end_date: 2011-07-02
  location: Bellevue, United States
  name: 'ICML: International Conference on Machine Learning'
  start_date: 2011-06-28
date_created: 2018-12-11T12:02:39Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2023-10-17T11:59:50Z
day: '01'
department:
- _id: ChLa
language:
- iso: eng
month: '01'
oa_version: None
page: 425 - 432
publication_status: published
publisher: ML Research Press
publist_id: '3316'
scopus_import: '1'
status: public
title: Learning multi-view neighborhood preserving projections
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '3320'
abstract:
- lang: eng
  text: Powerful statistical models that can be learned efficiently from large amounts
    of data are currently revolutionizing computer vision. These models possess a
    rich internal structure reflecting task-specific relations and constraints. This
    monograph introduces the reader to the most popular classes of structured models
    in computer vision. Our focus is discrete undirected graphical models which we
    cover in detail together with a description of algorithms for both probabilistic
    inference and maximum a posteriori inference. We discuss separately recently successful
    techniques for prediction in general structured models. In the second part of
    this monograph we describe methods for parameter learning where we distinguish
    the classic maximum likelihood based methods from the more recent prediction-based
    parameter learning methods. We highlight developments to enhance current models
    and discuss kernelized models and latent variable models. To make the monograph
    more practical and to provide links to further study we provide examples of successful
    application of many methods in the computer vision literature.
article_processing_charge: No
article_type: original
author:
- first_name: Sebastian
  full_name: Nowozin, Sebastian
  last_name: Nowozin
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: Nowozin S, Lampert C. Structured learning and prediction in computer vision.
    <i>Foundations and Trends in Computer Graphics and Vision</i>. 2011;6(3-4):185-365.
    doi:<a href="https://doi.org/10.1561/0600000033">10.1561/0600000033</a>
  apa: Nowozin, S., &#38; Lampert, C. (2011). Structured learning and prediction in
    computer vision. <i>Foundations and Trends in Computer Graphics and Vision</i>.
    Now Publishers. <a href="https://doi.org/10.1561/0600000033">https://doi.org/10.1561/0600000033</a>
  chicago: Nowozin, Sebastian, and Christoph Lampert. “Structured Learning and Prediction
    in Computer Vision.” <i>Foundations and Trends in Computer Graphics and Vision</i>.
    Now Publishers, 2011. <a href="https://doi.org/10.1561/0600000033">https://doi.org/10.1561/0600000033</a>.
  ieee: S. Nowozin and C. Lampert, “Structured learning and prediction in computer
    vision,” <i>Foundations and Trends in Computer Graphics and Vision</i>, vol. 6,
    no. 3–4. Now Publishers, pp. 185–365, 2011.
  ista: Nowozin S, Lampert C. 2011. Structured learning and prediction in computer
    vision. Foundations and Trends in Computer Graphics and Vision. 6(3–4), 185–365.
  mla: Nowozin, Sebastian, and Christoph Lampert. “Structured Learning and Prediction
    in Computer Vision.” <i>Foundations and Trends in Computer Graphics and Vision</i>,
    vol. 6, no. 3–4, Now Publishers, 2011, pp. 185–365, doi:<a href="https://doi.org/10.1561/0600000033">10.1561/0600000033</a>.
  short: S. Nowozin, C. Lampert, Foundations and Trends in Computer Graphics and Vision
    6 (2011) 185–365.
date_created: 2018-12-11T12:02:39Z
date_published: 2011-05-23T00:00:00Z
date_updated: 2023-10-17T11:52:46Z
day: '23'
ddc:
- '000'
department:
- _id: ChLa
doi: 10.1561/0600000033
file:
- access_level: open_access
  checksum: f1043ef389f1558e2a226bb51568511f
  content_type: application/pdf
  creator: dernst
  date_created: 2020-05-14T14:34:47Z
  date_updated: 2020-07-14T12:46:07Z
  file_id: '7837'
  file_name: 2011_CompGraphicsVision_Nowozin.pdf
  file_size: 3745064
  relation: main_file
file_date_updated: 2020-07-14T12:46:07Z
has_accepted_license: '1'
intvolume: '         6'
issue: 3-4
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 185 - 365
publication: Foundations and Trends in Computer Graphics and Vision
publication_status: published
publisher: Now Publishers
publist_id: '3315'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Structured learning and prediction in computer vision
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2011'
...
---
_id: '3322'
abstract:
- lang: eng
  text: We study multi-label prediction for structured output spaces, a problem that
    occurs, for example, in object detection in images, secondary structure prediction
    in computational biology, and graph matching with symmetries. Conventional multi-label
    classification techniques are typically not applicable in this situation, because
    they require explicit enumeration of the label space, which is infeasible in case
    of structured outputs. Relying on techniques originally designed for single- label
    structured prediction, in particular structured support vector machines, results
    in reduced prediction accuracy, or leads to infeasible optimization problems.
    In this work we derive a maximum-margin training formulation for multi-label structured
    prediction that remains computationally tractable while achieving high prediction
    accuracy. It also shares most beneficial properties with single-label maximum-margin
    approaches, in particular a formulation as a convex optimization problem, efficient
    working set training, and PAC-Bayesian generalization bounds.
article_processing_charge: No
author:
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: Lampert C. <i>Maximum Margin Multi Label Structured Prediction</i>. Neural
    Information Processing Systems Foundation; 2011.
  apa: 'Lampert, C. (2011). <i>Maximum margin multi label structured prediction</i>.
    <i>NIPS: Neural Information Processing Systems</i>. Neural Information Processing
    Systems Foundation.'
  chicago: 'Lampert, Christoph. <i>Maximum Margin Multi Label Structured Prediction</i>.
    <i>NIPS: Neural Information Processing Systems</i>. Neural Information Processing
    Systems Foundation, 2011.'
  ieee: C. Lampert, <i>Maximum margin multi label structured prediction</i>. Neural
    Information Processing Systems Foundation, 2011.
  ista: Lampert C. 2011. Maximum margin multi label structured prediction, Neural
    Information Processing Systems Foundation,p.
  mla: 'Lampert, Christoph. “Maximum Margin Multi Label Structured Prediction.” <i>NIPS:
    Neural Information Processing Systems</i>, Neural Information Processing Systems
    Foundation, 2011.'
  short: C. Lampert, Maximum Margin Multi Label Structured Prediction, Neural Information
    Processing Systems Foundation, 2011.
date_created: 2018-12-11T12:02:40Z
date_published: 2011-12-13T00:00:00Z
date_updated: 2023-10-17T11:47:36Z
day: '13'
department:
- _id: ChLa
language:
- iso: eng
month: '12'
oa_version: None
publication: 'NIPS: Neural Information Processing Systems'
publication_status: published
publisher: Neural Information Processing Systems Foundation
publist_id: '3313'
related_material:
  record:
  - id: '3163'
    relation: earlier_version
    status: public
status: public
title: Maximum margin multi label structured prediction
type: conference_poster
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2011'
...
---
_id: '3323'
abstract:
- lang: eng
  text: We present a new decidable logic called TREX for expressing constraints about
    imperative tree data structures. In particular, TREX supports a transitive closure
    operator that can express reachability constraints, which often appear in data
    structure invariants. We show that our logic is closed under weakest precondition
    computation, which enables its use for automated software verification. We further
    show that satisfiability of formulas in TREX is decidable in NP. The low complexity
    makes it an attractive alternative to more expensive logics such as monadic second-order
    logic (MSOL) over trees, which have been traditionally used for reasoning about
    tree data structures.
alternative_title:
- 'LNAI '
author:
- first_name: Thomas
  full_name: Wies, Thomas
  id: 447BFB88-F248-11E8-B48F-1D18A9856A87
  last_name: Wies
- first_name: Marco
  full_name: Muñiz, Marco
  last_name: Muñiz
- first_name: Viktor
  full_name: Kuncak, Viktor
  last_name: Kuncak
citation:
  ama: 'Wies T, Muñiz M, Kuncak V. An efficient decision procedure for imperative
    tree data structures. In: Vol 6803. Springer; 2011:476-491. doi:<a href="https://doi.org/10.1007/978-3-642-22438-6_36">10.1007/978-3-642-22438-6_36</a>'
  apa: 'Wies, T., Muñiz, M., &#38; Kuncak, V. (2011). An efficient decision procedure
    for imperative tree data structures (Vol. 6803, pp. 476–491). Presented at the
    CADE 23: Automated Deduction , Wrocław, Poland: Springer. <a href="https://doi.org/10.1007/978-3-642-22438-6_36">https://doi.org/10.1007/978-3-642-22438-6_36</a>'
  chicago: Wies, Thomas, Marco Muñiz, and Viktor Kuncak. “An Efficient Decision Procedure
    for Imperative Tree Data Structures,” 6803:476–91. Springer, 2011. <a href="https://doi.org/10.1007/978-3-642-22438-6_36">https://doi.org/10.1007/978-3-642-22438-6_36</a>.
  ieee: 'T. Wies, M. Muñiz, and V. Kuncak, “An efficient decision procedure for imperative
    tree data structures,” presented at the CADE 23: Automated Deduction , Wrocław,
    Poland, 2011, vol. 6803, pp. 476–491.'
  ista: 'Wies T, Muñiz M, Kuncak V. 2011. An efficient decision procedure for imperative
    tree data structures. CADE 23: Automated Deduction , LNAI , vol. 6803, 476–491.'
  mla: Wies, Thomas, et al. <i>An Efficient Decision Procedure for Imperative Tree
    Data Structures</i>. Vol. 6803, Springer, 2011, pp. 476–91, doi:<a href="https://doi.org/10.1007/978-3-642-22438-6_36">10.1007/978-3-642-22438-6_36</a>.
  short: T. Wies, M. Muñiz, V. Kuncak, in:, Springer, 2011, pp. 476–491.
conference:
  end_date: 2011-08-05
  location: Wrocław, Poland
  name: 'CADE 23: Automated Deduction '
  start_date: 2011-07-31
date_created: 2018-12-11T12:02:40Z
date_published: 2011-07-19T00:00:00Z
date_updated: 2023-02-23T12:23:48Z
day: '19'
department:
- _id: ToHe
doi: 10.1007/978-3-642-22438-6_36
intvolume: '      6803'
language:
- iso: eng
month: '07'
oa_version: None
page: 476 - 491
publication_status: published
publisher: Springer
publist_id: '3312'
quality_controlled: '1'
related_material:
  record:
  - id: '5383'
    relation: earlier_version
    status: public
scopus_import: 1
status: public
title: An efficient decision procedure for imperative tree data structures
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 6803
year: '2011'
...
---
_id: '3324'
abstract:
- lang: eng
  text: 'Automated termination provers often use the following schema to prove that
    a program terminates: construct a relational abstraction of the program''s transition
    relation and then show that the relational abstraction is well-founded. The focus
    of current tools has been on developing sophisticated techniques for constructing
    the abstractions while relying on known decidable logics (such as linear arithmetic)
    to express them. We believe we can significantly increase the class of programs
    that are amenable to automated termination proofs by identifying more expressive
    decidable logics for reasoning about well-founded relations. We therefore present
    a new decision procedure for reasoning about multiset orderings, which are among
    the most powerful orderings used to prove termination. We show that, using our
    decision procedure, one can automatically prove termination of natural abstractions
    of programs.'
alternative_title:
- LNCS
author:
- first_name: Ruzica
  full_name: Piskac, Ruzica
  last_name: Piskac
- first_name: Thomas
  full_name: Wies, Thomas
  id: 447BFB88-F248-11E8-B48F-1D18A9856A87
  last_name: Wies
citation:
  ama: 'Piskac R, Wies T. Decision procedures for automating termination proofs. In:
    Jhala R, Schmidt D, eds. Vol 6538. Springer; 2011:371-386. doi:<a href="https://doi.org/10.1007/978-3-642-18275-4_26">10.1007/978-3-642-18275-4_26</a>'
  apa: 'Piskac, R., &#38; Wies, T. (2011). Decision procedures for automating termination
    proofs. In R. Jhala &#38; D. Schmidt (Eds.) (Vol. 6538, pp. 371–386). Presented
    at the VMCAI: Verification Model Checking and Abstract Interpretation, Texas,
    USA: Springer. <a href="https://doi.org/10.1007/978-3-642-18275-4_26">https://doi.org/10.1007/978-3-642-18275-4_26</a>'
  chicago: Piskac, Ruzica, and Thomas Wies. “Decision Procedures for Automating Termination
    Proofs.” edited by Ranjit Jhala and David Schmidt, 6538:371–86. Springer, 2011.
    <a href="https://doi.org/10.1007/978-3-642-18275-4_26">https://doi.org/10.1007/978-3-642-18275-4_26</a>.
  ieee: 'R. Piskac and T. Wies, “Decision procedures for automating termination proofs,”
    presented at the VMCAI: Verification Model Checking and Abstract Interpretation,
    Texas, USA, 2011, vol. 6538, pp. 371–386.'
  ista: 'Piskac R, Wies T. 2011. Decision procedures for automating termination proofs.
    VMCAI: Verification Model Checking and Abstract Interpretation, LNCS, vol. 6538,
    371–386.'
  mla: Piskac, Ruzica, and Thomas Wies. <i>Decision Procedures for Automating Termination
    Proofs</i>. Edited by Ranjit Jhala and David Schmidt, vol. 6538, Springer, 2011,
    pp. 371–86, doi:<a href="https://doi.org/10.1007/978-3-642-18275-4_26">10.1007/978-3-642-18275-4_26</a>.
  short: R. Piskac, T. Wies, in:, R. Jhala, D. Schmidt (Eds.), Springer, 2011, pp.
    371–386.
conference:
  end_date: 2011-01-25
  location: Texas, USA
  name: 'VMCAI: Verification Model Checking and Abstract Interpretation'
  start_date: 2011-01-23
date_created: 2018-12-11T12:02:40Z
date_published: 2011-01-01T00:00:00Z
date_updated: 2021-01-12T07:42:39Z
day: '01'
department:
- _id: ToHe
doi: 10.1007/978-3-642-18275-4_26
editor:
- first_name: Ranjit
  full_name: Jhala, Ranjit
  last_name: Jhala
- first_name: David
  full_name: Schmidt, David
  last_name: Schmidt
intvolume: '      6538'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://infoscience.epfl.ch/record/170697/
month: '01'
oa: 1
oa_version: Submitted Version
page: 371 - 386
publication_status: published
publisher: Springer
publist_id: '3311'
quality_controlled: '1'
scopus_import: 1
status: public
title: Decision procedures for automating termination proofs
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 6538
year: '2011'
...
---
_id: '3325'
abstract:
- lang: eng
  text: We introduce streaming data string transducers that map input data strings
    to output data strings in a single left-to-right pass in linear time. Data strings
    are (unbounded) sequences of data values, tagged with symbols from a finite set,
    over a potentially infinite data do- main that supports only the operations of
    equality and ordering. The transducer uses a finite set of states, a finite set
    of variables ranging over the data domain, and a finite set of variables ranging
    over data strings. At every step, it can make decisions based on the next in-
    put symbol, updating its state, remembering the input data value in its data variables,
    and updating data-string variables by concatenat- ing data-string variables and
    new symbols formed from data vari- ables, while avoiding duplication. We establish
    that the problems of checking functional equivalence of two streaming transducers,
    and of checking whether a streaming transducer satisfies pre/post verification
    conditions specified by streaming acceptors over in- put/output data-strings,
    are in PSPACE. We identify a class of imperative and a class of functional pro-
    grams, manipulating lists of data items, which can be effectively translated to
    streaming data-string transducers. The imperative pro- grams dynamically modify
    a singly-linked heap by changing next- pointers of heap-nodes and by adding new
    nodes. The main re- striction specifies how the next-pointers can be used for
    traversal. We also identify an expressively equivalent fragment of functional
    programs that traverse a list using syntactically restricted recursive calls.
    Our results lead to algorithms for assertion checking and for checking functional
    equivalence of two programs, written possibly in different programming styles,
    for commonly used routines such as insert, delete, and reverse.
article_processing_charge: No
author:
- first_name: Rajeev
  full_name: Alur, Rajeev
  last_name: Alur
- first_name: Pavol
  full_name: Cerny, Pavol
  id: 4DCBEFFE-F248-11E8-B48F-1D18A9856A87
  last_name: Cerny
citation:
  ama: 'Alur R, Cerny P. Streaming transducers for algorithmic verification of single
    pass list processing programs. In: Vol 46. ACM; 2011:599-610. doi:<a href="https://doi.org/10.1145/1926385.1926454">10.1145/1926385.1926454</a>'
  apa: 'Alur, R., &#38; Cerny, P. (2011). Streaming transducers for algorithmic verification
    of single pass list processing programs (Vol. 46, pp. 599–610). Presented at the
    POPL: Principles of Programming Languages, Texas, USA: ACM. <a href="https://doi.org/10.1145/1926385.1926454">https://doi.org/10.1145/1926385.1926454</a>'
  chicago: Alur, Rajeev, and Pavol Cerny. “Streaming Transducers for Algorithmic Verification
    of Single Pass List Processing Programs,” 46:599–610. ACM, 2011. <a href="https://doi.org/10.1145/1926385.1926454">https://doi.org/10.1145/1926385.1926454</a>.
  ieee: 'R. Alur and P. Cerny, “Streaming transducers for algorithmic verification
    of single pass list processing programs,” presented at the POPL: Principles of
    Programming Languages, Texas, USA, 2011, vol. 46, no. 1, pp. 599–610.'
  ista: 'Alur R, Cerny P. 2011. Streaming transducers for algorithmic verification
    of single pass list processing programs. POPL: Principles of Programming Languages
    vol. 46, 599–610.'
  mla: Alur, Rajeev, and Pavol Cerny. <i>Streaming Transducers for Algorithmic Verification
    of Single Pass List Processing Programs</i>. Vol. 46, no. 1, ACM, 2011, pp. 599–610,
    doi:<a href="https://doi.org/10.1145/1926385.1926454">10.1145/1926385.1926454</a>.
  short: R. Alur, P. Cerny, in:, ACM, 2011, pp. 599–610.
conference:
  end_date: 2011-01-28
  location: Texas, USA
  name: 'POPL: Principles of Programming Languages'
  start_date: 2011-01-26
date_created: 2018-12-11T12:02:41Z
date_published: 2011-01-26T00:00:00Z
date_updated: 2022-03-21T08:12:51Z
day: '26'
department:
- _id: ToHe
doi: 10.1145/1926385.1926454
intvolume: '        46'
issue: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 599 - 610
publication_status: published
publisher: ACM
publist_id: '3310'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Streaming transducers for algorithmic verification of single pass list processing
  programs
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 46
year: '2011'
...
---
_id: '3326'
abstract:
- lang: eng
  text: 'Weighted automata map input words to numerical values. Ap- plications of
    weighted automata include formal verification of quantitative properties, as well
    as text, speech, and image processing. A weighted au- tomaton is defined with
    respect to a semiring. For the tropical semiring, the weight of a run is the sum
    of the weights of the transitions taken along the run, and the value of a word
    is the minimal weight of an accepting run on it. In the 90’s, Krob studied the
    decidability of problems on rational series defined with respect to the tropical
    semiring. Rational series are strongly related to weighted automata, and Krob’s
    results apply to them. In par- ticular, it follows from Krob’s results that the
    universality problem (that is, deciding whether the values of all words are below
    some threshold) is decidable for weighted automata defined with respect to the
    tropical semir- ing with domain ∪ {∞}, and that the equality problem is undecidable
    when the domain is ∪ {∞}. In this paper we continue the study of the borders of
    decidability in weighted automata, describe alternative and direct proofs of the
    above results, and tighten them further. Unlike the proofs of Krob, which are
    algebraic in their nature, our proofs stay in the terrain of state machines, and
    the reduction is from the halting problem of a two-counter machine. This enables
    us to significantly simplify Krob’s reasoning, make the un- decidability result
    accessible to the automata-theoretic community, and strengthen it to apply already
    to a very simple class of automata: all the states are accepting, there are no
    initial nor final weights, and all the weights on the transitions are from the
    set {−1, 0, 1}. The fact we work directly with the automata enables us to tighten
    also the decidability re- sults and to show that the universality problem for
    weighted automata defined with respect to the tropical semiring with domain ∪
    {∞}, and in fact even with domain ≥0 ∪ {∞}, is PSPACE-complete. Our results thus
    draw a sharper picture about the decidability of decision problems for weighted
    automata, in both the front of containment vs. universality and the front of the
    ∪ {∞} vs. the ∪ {∞} domains.'
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Shaull
  full_name: Almagor, Shaull
  last_name: Almagor
- first_name: Udi
  full_name: Boker, Udi
  id: 31E297B6-F248-11E8-B48F-1D18A9856A87
  last_name: Boker
- first_name: Orna
  full_name: Kupferman, Orna
  last_name: Kupferman
citation:
  ama: 'Almagor S, Boker U, Kupferman O. What’s decidable about weighted automata
    . In: Vol 6996. Springer; 2011:482-491. doi:<a href="https://doi.org/10.1007/978-3-642-24372-1_37">10.1007/978-3-642-24372-1_37</a>'
  apa: 'Almagor, S., Boker, U., &#38; Kupferman, O. (2011). What’s decidable about
    weighted automata  (Vol. 6996, pp. 482–491). Presented at the ATVA: Automated
    Technology for Verification and Analysis, Taipei, Taiwan: Springer. <a href="https://doi.org/10.1007/978-3-642-24372-1_37">https://doi.org/10.1007/978-3-642-24372-1_37</a>'
  chicago: Almagor, Shaull, Udi Boker, and Orna Kupferman. “What’s Decidable about
    Weighted Automata ,” 6996:482–91. Springer, 2011. <a href="https://doi.org/10.1007/978-3-642-24372-1_37">https://doi.org/10.1007/978-3-642-24372-1_37</a>.
  ieee: 'S. Almagor, U. Boker, and O. Kupferman, “What’s decidable about weighted
    automata ,” presented at the ATVA: Automated Technology for Verification and Analysis,
    Taipei, Taiwan, 2011, vol. 6996, pp. 482–491.'
  ista: 'Almagor S, Boker U, Kupferman O. 2011. What’s decidable about weighted automata
    . ATVA: Automated Technology for Verification and Analysis, LNCS, vol. 6996, 482–491.'
  mla: Almagor, Shaull, et al. <i>What’s Decidable about Weighted Automata </i>. Vol.
    6996, Springer, 2011, pp. 482–91, doi:<a href="https://doi.org/10.1007/978-3-642-24372-1_37">10.1007/978-3-642-24372-1_37</a>.
  short: S. Almagor, U. Boker, O. Kupferman, in:, Springer, 2011, pp. 482–491.
conference:
  end_date: 2011-10-14
  location: Taipei, Taiwan
  name: 'ATVA: Automated Technology for Verification and Analysis'
  start_date: 2011-10-11
date_created: 2018-12-11T12:02:41Z
date_published: 2011-10-14T00:00:00Z
date_updated: 2021-01-12T07:42:40Z
day: '14'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-642-24372-1_37
file:
- access_level: open_access
  checksum: a7ca08a2cb1b6925f4c18a3034ae5659
  content_type: application/pdf
  creator: dernst
  date_created: 2020-05-19T16:08:32Z
  date_updated: 2020-07-14T12:46:07Z
  file_id: '7868'
  file_name: 2011_LNCS_Almagor.pdf
  file_size: 182309
  relation: main_file
file_date_updated: 2020-07-14T12:46:07Z
has_accepted_license: '1'
intvolume: '      6996'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Submitted Version
page: 482 - 491
publication_status: published
publisher: Springer
publist_id: '3309'
quality_controlled: '1'
status: public
title: 'What’s decidable about weighted automata '
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6996
year: '2011'
...
