---
_id: '10834'
abstract:
- lang: eng
  text: Hematopoietic-specific protein 1 (Hem1) is an essential subunit of the WAVE
    regulatory complex (WRC) in immune cells. WRC is crucial for Arp2/3 complex activation
    and the protrusion of branched actin filament networks. Moreover, Hem1 loss of
    function in immune cells causes autoimmune diseases in humans. Here, we show that
    genetic removal of Hem1 in macrophages diminishes frequency and efficacy of phagocytosis
    as well as phagocytic cup formation in addition to defects in lamellipodial protrusion
    and migration. Moreover, Hem1-null macrophages displayed strong defects in cell
    adhesion despite unaltered podosome formation and concomitant extracellular matrix
    degradation. Specifically, dynamics of both adhesion and de-adhesion as well as
    concomitant phosphorylation of paxillin and focal adhesion kinase (FAK) were significantly
    compromised. Accordingly, disruption of WRC function in non-hematopoietic cells
    coincided with both defects in adhesion turnover and altered FAK and paxillin
    phosphorylation. Consistently, platelets exhibited reduced adhesion and diminished
    integrin αIIbβ3 activation upon WRC removal. Interestingly, adhesion phenotypes,
    but not lamellipodia formation, were partially rescued by small molecule activation
    of FAK. A full rescue of the phenotype, including lamellipodia formation, required
    not only the presence of WRCs but also their binding to and activation by Rac.
    Collectively, our results uncover that WRC impacts on integrin-dependent processes
    in a FAK-dependent manner, controlling formation and dismantling of adhesions,
    relevant for properly grabbing onto extracellular surfaces and particles during
    cell edge expansion, like in migration or phagocytosis.
acknowledgement: We are grateful to Silvia Prettin, Ina Schleicher, and Petra Hagendorff
  for expert technical assistance; David Dettbarn for animal keeping and breeding;
  and Lothar Gröbe and Maria Höxter for cell sorting. We also thank Werner Tegge for
  peptides and Giorgio Scita for antibodies. This work was supported, in part, by
  the Deutsche Forschungsgemeinschaft (DFG), Priority Programm SPP1150 (to T.E.B.S.,
  K.R., and M. Sixt), and by DFG grant GRK2223/1 (to K.R.). T.E.B.S. acknowledges
  support by the Helmholtz Society through HGF impulse fund W2/W3-066 and M. Schnoor
  by the Mexican Council for Science and Technology (CONACyT, 284292 ), Fund SEP-Cinvestav
  ( 108 ), and the Royal Society, UK (Newton Advanced Fellowship, NAF/R1/180017 ).
article_processing_charge: No
article_type: original
author:
- first_name: Stephanie
  full_name: Stahnke, Stephanie
  last_name: Stahnke
- first_name: Hermann
  full_name: Döring, Hermann
  last_name: Döring
- first_name: Charly
  full_name: Kusch, Charly
  last_name: Kusch
- first_name: David J.J.
  full_name: de Gorter, David J.J.
  last_name: de Gorter
- first_name: Sebastian
  full_name: Dütting, Sebastian
  last_name: Dütting
- first_name: Aleks
  full_name: Guledani, Aleks
  last_name: Guledani
- first_name: Irina
  full_name: Pleines, Irina
  last_name: Pleines
- first_name: Michael
  full_name: Schnoor, Michael
  last_name: Schnoor
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
- first_name: Robert
  full_name: Geffers, Robert
  last_name: Geffers
- first_name: Manfred
  full_name: Rohde, Manfred
  last_name: Rohde
- first_name: Mathias
  full_name: Müsken, Mathias
  last_name: Müsken
- first_name: Frieda
  full_name: Kage, Frieda
  last_name: Kage
- first_name: Anika
  full_name: Steffen, Anika
  last_name: Steffen
- first_name: Jan
  full_name: Faix, Jan
  last_name: Faix
- first_name: Bernhard
  full_name: Nieswandt, Bernhard
  last_name: Nieswandt
- first_name: Klemens
  full_name: Rottner, Klemens
  last_name: Rottner
- first_name: Theresia E.B.
  full_name: Stradal, Theresia E.B.
  last_name: Stradal
citation:
  ama: Stahnke S, Döring H, Kusch C, et al. Loss of Hem1 disrupts macrophage function
    and impacts migration, phagocytosis, and integrin-mediated adhesion. <i>Current
    Biology</i>. 2021;31(10):2051-2064.e8. doi:<a href="https://doi.org/10.1016/j.cub.2021.02.043">10.1016/j.cub.2021.02.043</a>
  apa: Stahnke, S., Döring, H., Kusch, C., de Gorter, D. J. J., Dütting, S., Guledani,
    A., … Stradal, T. E. B. (2021). Loss of Hem1 disrupts macrophage function and
    impacts migration, phagocytosis, and integrin-mediated adhesion. <i>Current Biology</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.cub.2021.02.043">https://doi.org/10.1016/j.cub.2021.02.043</a>
  chicago: Stahnke, Stephanie, Hermann Döring, Charly Kusch, David J.J. de Gorter,
    Sebastian Dütting, Aleks Guledani, Irina Pleines, et al. “Loss of Hem1 Disrupts
    Macrophage Function and Impacts Migration, Phagocytosis, and Integrin-Mediated
    Adhesion.” <i>Current Biology</i>. Elsevier, 2021. <a href="https://doi.org/10.1016/j.cub.2021.02.043">https://doi.org/10.1016/j.cub.2021.02.043</a>.
  ieee: S. Stahnke <i>et al.</i>, “Loss of Hem1 disrupts macrophage function and impacts
    migration, phagocytosis, and integrin-mediated adhesion,” <i>Current Biology</i>,
    vol. 31, no. 10. Elsevier, p. 2051–2064.e8, 2021.
  ista: Stahnke S, Döring H, Kusch C, de Gorter DJJ, Dütting S, Guledani A, Pleines
    I, Schnoor M, Sixt MK, Geffers R, Rohde M, Müsken M, Kage F, Steffen A, Faix J,
    Nieswandt B, Rottner K, Stradal TEB. 2021. Loss of Hem1 disrupts macrophage function
    and impacts migration, phagocytosis, and integrin-mediated adhesion. Current Biology.
    31(10), 2051–2064.e8.
  mla: Stahnke, Stephanie, et al. “Loss of Hem1 Disrupts Macrophage Function and Impacts
    Migration, Phagocytosis, and Integrin-Mediated Adhesion.” <i>Current Biology</i>,
    vol. 31, no. 10, Elsevier, 2021, p. 2051–2064.e8, doi:<a href="https://doi.org/10.1016/j.cub.2021.02.043">10.1016/j.cub.2021.02.043</a>.
  short: S. Stahnke, H. Döring, C. Kusch, D.J.J. de Gorter, S. Dütting, A. Guledani,
    I. Pleines, M. Schnoor, M.K. Sixt, R. Geffers, M. Rohde, M. Müsken, F. Kage, A.
    Steffen, J. Faix, B. Nieswandt, K. Rottner, T.E.B. Stradal, Current Biology 31
    (2021) 2051–2064.e8.
date_created: 2022-03-08T07:51:04Z
date_published: 2021-05-24T00:00:00Z
date_updated: 2023-08-17T07:01:14Z
day: '24'
department:
- _id: MiSi
doi: 10.1016/j.cub.2021.02.043
external_id:
  isi:
  - '000654652200002'
  pmid:
  - '33711252'
intvolume: '        31'
isi: 1
issue: '10'
keyword:
- General Agricultural and Biological Sciences
- General Biochemistry
- Genetics and Molecular Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/2020.03.24.005835
month: '05'
oa: 1
oa_version: Preprint
page: 2051-2064.e8
pmid: 1
publication: Current Biology
publication_identifier:
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Loss of Hem1 disrupts macrophage function and impacts migration, phagocytosis,
  and integrin-mediated adhesion
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 31
year: '2021'
...
---
_id: '10838'
abstract:
- lang: eng
  text: Combining hybrid zone analysis with genomic data is a promising approach to
    understanding the genomic basis of adaptive divergence. It allows for the identification
    of genomic regions underlying barriers to gene flow. It also provides insights
    into spatial patterns of allele frequency change, informing about the interplay
    between environmental factors, dispersal and selection. However, when only a single
    hybrid zone is analysed, it is difficult to separate patterns generated by selection
    from those resulting from chance. Therefore, it is beneficial to look for repeatable
    patterns across replicate hybrid zones in the same system. We applied this approach
    to the marine snail Littorina saxatilis, which contains two ecotypes, adapted
    to wave-exposed rocks vs. high-predation boulder fields. The existence of numerous
    hybrid zones between ecotypes offered the opportunity to test for the repeatability
    of genomic architectures and spatial patterns of divergence. We sampled and phenotyped
    snails from seven replicate hybrid zones on the Swedish west coast and genotyped
    them for thousands of single nucleotide polymorphisms. Shell shape and size showed
    parallel clines across all zones. Many genomic regions showing steep clines and/or
    high differentiation were shared among hybrid zones, consistent with a common
    evolutionary history and extensive gene flow between zones, and supporting the
    importance of these regions for divergence. In particular, we found that several
    large putative inversions contribute to divergence in all locations. Additionally,
    we found evidence for consistent displacement of clines from the boulder–rock
    transition. Our results demonstrate patterns of spatial variation that would not
    be accessible without continuous spatial sampling, a large genomic data set and
    replicate hybrid zones.
acknowledgement: "We thank everyone who helped with fieldwork, snail processing and
  DNA extractions, particularly Laura Brettell, Mårten Duvetorp, Juan Galindo, Anne-Lise
  Liabot, Mark Ravinet, Irena Senčić and Zuzanna Zagrodzka. We are also grateful to
  Edinburgh Genomics for library preparation and sequencing, to Stuart Baird and Mark
  Ravinet for helpful discussions, and to three anonymous reviewers for their constructive
  comments. This work was supported by the Natural Environment Research Council (NE/K014021/1),
  the European Research Council (AdG-693030-BARRIERS), Swedish Research Councils Formas
  and Vetenskapsrådet through a Linnaeus grant to the Centre for Marine Evolutionary
  Biology (217-2008-1719), the European Regional Development Fund (POCI-01-0145-FEDER-030628),
  and the Fundação para a iência e a Tecnologia,\r\nPortugal (PTDC/BIA-EVL/\r\n30628/2017).
  A.M.W. and R.F. were\r\nfunded by the European Union’s Horizon 2020 research and
  innovation\r\nprogramme under Marie Skłodowska-Curie\r\ngrant agreements\r\nno.
  754411/797747 and no. 706376, respectively."
article_processing_charge: No
article_type: original
author:
- first_name: Anja M
  full_name: Westram, Anja M
  id: 3C147470-F248-11E8-B48F-1D18A9856A87
  last_name: Westram
  orcid: 0000-0003-1050-4969
- first_name: Rui
  full_name: Faria, Rui
  last_name: Faria
- first_name: Kerstin
  full_name: Johannesson, Kerstin
  last_name: Johannesson
- first_name: Roger
  full_name: Butlin, Roger
  last_name: Butlin
citation:
  ama: Westram AM, Faria R, Johannesson K, Butlin R. Using replicate hybrid zones
    to understand the genomic basis of adaptive divergence. <i>Molecular Ecology</i>.
    2021;30(15):3797-3814. doi:<a href="https://doi.org/10.1111/mec.15861">10.1111/mec.15861</a>
  apa: Westram, A. M., Faria, R., Johannesson, K., &#38; Butlin, R. (2021). Using
    replicate hybrid zones to understand the genomic basis of adaptive divergence.
    <i>Molecular Ecology</i>. Wiley. <a href="https://doi.org/10.1111/mec.15861">https://doi.org/10.1111/mec.15861</a>
  chicago: Westram, Anja M, Rui Faria, Kerstin Johannesson, and Roger Butlin. “Using
    Replicate Hybrid Zones to Understand the Genomic Basis of Adaptive Divergence.”
    <i>Molecular Ecology</i>. Wiley, 2021. <a href="https://doi.org/10.1111/mec.15861">https://doi.org/10.1111/mec.15861</a>.
  ieee: A. M. Westram, R. Faria, K. Johannesson, and R. Butlin, “Using replicate hybrid
    zones to understand the genomic basis of adaptive divergence,” <i>Molecular Ecology</i>,
    vol. 30, no. 15. Wiley, pp. 3797–3814, 2021.
  ista: Westram AM, Faria R, Johannesson K, Butlin R. 2021. Using replicate hybrid
    zones to understand the genomic basis of adaptive divergence. Molecular Ecology.
    30(15), 3797–3814.
  mla: Westram, Anja M., et al. “Using Replicate Hybrid Zones to Understand the Genomic
    Basis of Adaptive Divergence.” <i>Molecular Ecology</i>, vol. 30, no. 15, Wiley,
    2021, pp. 3797–814, doi:<a href="https://doi.org/10.1111/mec.15861">10.1111/mec.15861</a>.
  short: A.M. Westram, R. Faria, K. Johannesson, R. Butlin, Molecular Ecology 30 (2021)
    3797–3814.
date_created: 2022-03-08T11:28:32Z
date_published: 2021-08-01T00:00:00Z
date_updated: 2023-09-05T16:02:19Z
day: '01'
ddc:
- '570'
department:
- _id: BeVi
doi: 10.1111/mec.15861
external_id:
  isi:
  - '000669439700001'
  pmid:
  - '33638231'
file:
- access_level: open_access
  checksum: d5611f243ceb63a0e091d6662ebd9cda
  content_type: application/pdf
  creator: dernst
  date_created: 2022-03-08T11:31:30Z
  date_updated: 2022-03-08T11:31:30Z
  file_id: '10839'
  file_name: 2021_MolecularEcology_Westram.pdf
  file_size: 1726548
  relation: main_file
  success: 1
file_date_updated: 2022-03-08T11:31:30Z
has_accepted_license: '1'
intvolume: '        30'
isi: 1
issue: '15'
keyword:
- Genetics
- Ecology
- Evolution
- Behavior and Systematics
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 3797-3814
pmid: 1
publication: Molecular Ecology
publication_identifier:
  eissn:
  - 1365-294X
  issn:
  - 0962-1083
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Using replicate hybrid zones to understand the genomic basis of adaptive divergence
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 30
year: '2021'
...
---
_id: '10847'
abstract:
- lang: eng
  text: 'We study the two-player zero-sum extension of the partially observable stochastic
    shortest-path problem where one agent has only partial information about the environment.
    We formulate this problem as a partially observable stochastic game (POSG): given
    a set of target states and negative rewards for each transition, the player with
    imperfect information maximizes the expected undiscounted total reward until a
    target state is reached. The second player with the perfect information aims for
    the opposite. We base our formalism on POSGs with one-sided observability (OS-POSGs)
    and give the following contributions: (1) we introduce a novel heuristic search
    value iteration algorithm that iteratively solves depth-limited variants of the
    game, (2) we derive the bound on the depth guaranteeing an arbitrary precision,
    (3) we propose a novel upper-bound estimation that allows early terminations,
    and (4) we experimentally evaluate the algorithm on a pursuit-evasion game.'
acknowledgement: "This research was supported by the Czech Science Foundation (no.
  19-24384Y), by the OP VVV MEYS funded project CZ.02.1.01/0.0/0.0/16 019/0000765
  “Research Center for Informatics”, by the ERC CoG 863818 (ForM-SMArt), and by the
  Combat Capabilities Development Command Army Research Laboratory and was accomplished
  under Cooperative\r\nAgreement Number W911NF-13-2-0045 (ARL Cyber Security CRA).
  The views and conclusions contained in this document are those of the authors and
  should not be interpreted as\r\nrepresenting the official policies, either expressed
  or implied, of the Combat Capabilities Development Command Army Research Laboratory
  or the U.S. Government. The U.S. Government is authorized to reproduce and distribute
  reprints for Government purposes not withstanding any copyright notation here on. "
article_processing_charge: No
author:
- first_name: Petr
  full_name: Tomášek, Petr
  last_name: Tomášek
- first_name: Karel
  full_name: Horák, Karel
  last_name: Horák
- first_name: Aditya
  full_name: Aradhye, Aditya
  last_name: Aradhye
- first_name: Branislav
  full_name: Bošanský, Branislav
  last_name: Bošanský
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
citation:
  ama: 'Tomášek P, Horák K, Aradhye A, Bošanský B, Chatterjee K. Solving partially
    observable stochastic shortest-path games. In: <i>30th International Joint Conference
    on Artificial Intelligence</i>. International Joint Conferences on Artificial
    Intelligence; 2021:4182-4189. doi:<a href="https://doi.org/10.24963/ijcai.2021/575">10.24963/ijcai.2021/575</a>'
  apa: 'Tomášek, P., Horák, K., Aradhye, A., Bošanský, B., &#38; Chatterjee, K. (2021).
    Solving partially observable stochastic shortest-path games. In <i>30th International
    Joint Conference on Artificial Intelligence</i> (pp. 4182–4189). Virtual, Online:
    International Joint Conferences on Artificial Intelligence. <a href="https://doi.org/10.24963/ijcai.2021/575">https://doi.org/10.24963/ijcai.2021/575</a>'
  chicago: Tomášek, Petr, Karel Horák, Aditya Aradhye, Branislav Bošanský, and Krishnendu
    Chatterjee. “Solving Partially Observable Stochastic Shortest-Path Games.” In
    <i>30th International Joint Conference on Artificial Intelligence</i>, 4182–89.
    International Joint Conferences on Artificial Intelligence, 2021. <a href="https://doi.org/10.24963/ijcai.2021/575">https://doi.org/10.24963/ijcai.2021/575</a>.
  ieee: P. Tomášek, K. Horák, A. Aradhye, B. Bošanský, and K. Chatterjee, “Solving
    partially observable stochastic shortest-path games,” in <i>30th International
    Joint Conference on Artificial Intelligence</i>, Virtual, Online, 2021, pp. 4182–4189.
  ista: 'Tomášek P, Horák K, Aradhye A, Bošanský B, Chatterjee K. 2021. Solving partially
    observable stochastic shortest-path games. 30th International Joint Conference
    on Artificial Intelligence. IJCAI: International Joint Conferences on Artificial
    Intelligence Organization, 4182–4189.'
  mla: Tomášek, Petr, et al. “Solving Partially Observable Stochastic Shortest-Path
    Games.” <i>30th International Joint Conference on Artificial Intelligence</i>,
    International Joint Conferences on Artificial Intelligence, 2021, pp. 4182–89,
    doi:<a href="https://doi.org/10.24963/ijcai.2021/575">10.24963/ijcai.2021/575</a>.
  short: P. Tomášek, K. Horák, A. Aradhye, B. Bošanský, K. Chatterjee, in:, 30th International
    Joint Conference on Artificial Intelligence, International Joint Conferences on
    Artificial Intelligence, 2021, pp. 4182–4189.
conference:
  end_date: 2021-08-27
  location: Virtual, Online
  name: 'IJCAI: International Joint Conferences on Artificial Intelligence Organization'
  start_date: 2021-08-19
date_created: 2022-03-13T23:01:47Z
date_published: 2021-09-01T00:00:00Z
date_updated: 2025-07-14T09:10:13Z
day: '01'
department:
- _id: KrCh
doi: 10.24963/ijcai.2021/575
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.24963/ijcai.2021/575
month: '09'
oa: 1
oa_version: Published Version
page: 4182-4189
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: 30th International Joint Conference on Artificial Intelligence
publication_identifier:
  isbn:
  - '9780999241196'
  issn:
  - 1045-0823
publication_status: published
publisher: International Joint Conferences on Artificial Intelligence
quality_controlled: '1'
scopus_import: '1'
status: public
title: Solving partially observable stochastic shortest-path games
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '10852'
abstract:
- lang: eng
  text: ' We review old and new results on the Fröhlich polaron model. The discussion
    includes the validity of the (classical) Pekar approximation in the strong coupling
    limit, quantum corrections to this limit, as well as the divergence of the effective
    polaron mass.'
acknowledgement: This work was supported by the European Research Council (ERC) under
  the Euro-pean Union’s Horizon 2020 research and innovation programme (grant agreementNo.
  694227).
article_number: '2060012'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Seiringer R. The polaron at strong coupling. <i>Reviews in Mathematical Physics</i>.
    2021;33(01). doi:<a href="https://doi.org/10.1142/s0129055x20600120">10.1142/s0129055x20600120</a>
  apa: Seiringer, R. (2021). The polaron at strong coupling. <i>Reviews in Mathematical
    Physics</i>. World Scientific Publishing. <a href="https://doi.org/10.1142/s0129055x20600120">https://doi.org/10.1142/s0129055x20600120</a>
  chicago: Seiringer, Robert. “The Polaron at Strong Coupling.” <i>Reviews in Mathematical
    Physics</i>. World Scientific Publishing, 2021. <a href="https://doi.org/10.1142/s0129055x20600120">https://doi.org/10.1142/s0129055x20600120</a>.
  ieee: R. Seiringer, “The polaron at strong coupling,” <i>Reviews in Mathematical
    Physics</i>, vol. 33, no. 01. World Scientific Publishing, 2021.
  ista: Seiringer R. 2021. The polaron at strong coupling. Reviews in Mathematical
    Physics. 33(01), 2060012.
  mla: Seiringer, Robert. “The Polaron at Strong Coupling.” <i>Reviews in Mathematical
    Physics</i>, vol. 33, no. 01, 2060012, World Scientific Publishing, 2021, doi:<a
    href="https://doi.org/10.1142/s0129055x20600120">10.1142/s0129055x20600120</a>.
  short: R. Seiringer, Reviews in Mathematical Physics 33 (2021).
date_created: 2022-03-18T08:11:34Z
date_published: 2021-02-01T00:00:00Z
date_updated: 2023-09-05T16:08:02Z
day: '01'
department:
- _id: RoSe
doi: 10.1142/s0129055x20600120
ec_funded: 1
external_id:
  arxiv:
  - '1912.12509'
  isi:
  - '000613313200013'
intvolume: '        33'
isi: 1
issue: '01'
keyword:
- Mathematical Physics
- Statistical and Nonlinear Physics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1912.12509
month: '02'
oa: 1
oa_version: Preprint
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
publication: Reviews in Mathematical Physics
publication_identifier:
  eissn:
  - 1793-6659
  issn:
  - 0129-055X
publication_status: published
publisher: World Scientific Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: The polaron at strong coupling
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 33
year: '2021'
...
---
_id: '10853'
abstract:
- lang: eng
  text: Dynamic Connectivity is a fundamental algorithmic graph problem, motivated
    by a wide range of applications to social and communication networks and used
    as a building block in various other algorithms, such as the bi-connectivity and
    the dynamic minimal spanning tree problems. In brief, we wish to maintain the
    connected components of the graph under dynamic edge insertions and deletions.
    In the sequential case, the problem has been well-studied from both theoretical
    and practical perspectives. However, much less is known about efficient concurrent
    solutions to this problem. This is the gap we address in this paper. We start
    from one of the classic data structures used to solve this problem, the Euler
    Tour Tree. Our first contribution is a non-blocking single-writer implementation
    of it. We leverage this data structure to obtain the first truly concurrent generalization
    of dynamic connectivity, which preserves the time complexity of its sequential
    counterpart, but is also scalable in practice. To achieve this, we rely on three
    main techniques. The first is to ensure that connectivity queries, which usually
    dominate real-world workloads, are non-blocking. The second non-trivial technique
    expands the above idea by making all queries that do not change the connectivity
    structure non-blocking. The third ingredient is applying fine-grained locking
    for updating the connected components, which allows operations on disjoint components
    to occur in parallel. We evaluate the resulting algorithm on various workloads,
    executing on both real and synthetic graphs. The results show the efficiency of
    each of the proposed optimizations; the most efficient variant improves the performance
    of a coarse-grained based implementation on realistic scenarios up to 6x on average
    and up to 30x when connectivity queries dominate.
article_processing_charge: No
arxiv: 1
author:
- first_name: Alexander
  full_name: Fedorov, Alexander
  last_name: Fedorov
- first_name: Nikita
  full_name: Koval, Nikita
  last_name: Koval
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
citation:
  ama: 'Fedorov A, Koval N, Alistarh D-A. A scalable concurrent algorithm for dynamic
    connectivity. In: <i>Proceedings of the 33rd ACM Symposium on Parallelism in Algorithms
    and Architectures</i>. Association for Computing Machinery; 2021:208-220. doi:<a
    href="https://doi.org/10.1145/3409964.3461810">10.1145/3409964.3461810</a>'
  apa: 'Fedorov, A., Koval, N., &#38; Alistarh, D.-A. (2021). A scalable concurrent
    algorithm for dynamic connectivity. In <i>Proceedings of the 33rd ACM Symposium
    on Parallelism in Algorithms and Architectures</i> (pp. 208–220). Virtual, Online:
    Association for Computing Machinery. <a href="https://doi.org/10.1145/3409964.3461810">https://doi.org/10.1145/3409964.3461810</a>'
  chicago: Fedorov, Alexander, Nikita Koval, and Dan-Adrian Alistarh. “A Scalable
    Concurrent Algorithm for Dynamic Connectivity.” In <i>Proceedings of the 33rd
    ACM Symposium on Parallelism in Algorithms and Architectures</i>, 208–20. Association
    for Computing Machinery, 2021. <a href="https://doi.org/10.1145/3409964.3461810">https://doi.org/10.1145/3409964.3461810</a>.
  ieee: A. Fedorov, N. Koval, and D.-A. Alistarh, “A scalable concurrent algorithm
    for dynamic connectivity,” in <i>Proceedings of the 33rd ACM Symposium on Parallelism
    in Algorithms and Architectures</i>, Virtual, Online, 2021, pp. 208–220.
  ista: 'Fedorov A, Koval N, Alistarh D-A. 2021. A scalable concurrent algorithm for
    dynamic connectivity. Proceedings of the 33rd ACM Symposium on Parallelism in
    Algorithms and Architectures. SPAA: Symposium on Parallelism in Algorithms and
    Architectures, 208–220.'
  mla: Fedorov, Alexander, et al. “A Scalable Concurrent Algorithm for Dynamic Connectivity.”
    <i>Proceedings of the 33rd ACM Symposium on Parallelism in Algorithms and Architectures</i>,
    Association for Computing Machinery, 2021, pp. 208–20, doi:<a href="https://doi.org/10.1145/3409964.3461810">10.1145/3409964.3461810</a>.
  short: A. Fedorov, N. Koval, D.-A. Alistarh, in:, Proceedings of the 33rd ACM Symposium
    on Parallelism in Algorithms and Architectures, Association for Computing Machinery,
    2021, pp. 208–220.
conference:
  end_date: 2021-07-08
  location: Virtual, Online
  name: 'SPAA: Symposium on Parallelism in Algorithms and Architectures'
  start_date: 2021-07-06
date_created: 2022-03-18T08:21:47Z
date_published: 2021-07-01T00:00:00Z
date_updated: 2022-03-18T08:45:46Z
day: '01'
department:
- _id: DaAl
doi: 10.1145/3409964.3461810
external_id:
  arxiv:
  - '2105.08098'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2105.08098
month: '07'
oa: 1
oa_version: Preprint
page: 208-220
publication: Proceedings of the 33rd ACM Symposium on Parallelism in Algorithms and
  Architectures
publication_identifier:
  isbn:
  - '9781450380706'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: A scalable concurrent algorithm for dynamic connectivity
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '10854'
abstract:
- lang: eng
  text: "Consider a distributed task where the communication network is fixed but
    the local inputs given to the nodes of the distributed system may change over
    time. In this work, we explore the following question: if some of the local inputs
    change, can an existing solution be updated efficiently, in a dynamic and distributed
    manner?\r\nTo address this question, we define the batch dynamic CONGEST model
    in which we are given a bandwidth-limited communication network and a dynamic
    edge labelling defines the problem input. The task is to maintain a solution to
    a graph problem on the labelled graph under batch changes. We investigate, when
    a batch of alpha edge label changes arrive, - how much time as a function of alpha
    we need to update an existing solution, and - how much information the nodes have
    to keep in local memory between batches in order to update the solution quickly.\r\nOur
    work lays the foundations for the theory of input-dynamic distributed network
    algorithms. We give a general picture of the complexity landscape in this model,
    design both universal algorithms and algorithms for concrete problems, and present
    a general framework for lower bounds. The diverse time complexity of our model
    spans from constant time, through time polynomial in alpha, and to alpha time,
    which we show to be enough for any task."
acknowledgement: We thank Jukka Suomela for discussions. We also thank our shepherd
  Mohammad Hajiesmaili and the reviewers for their time and suggestions on how to
  improve the paper. This project has received funding from the European Research
  Council (ERC) under the European Union’s Horizon 2020 research and innovation programme
  (grant agreement No 805223 ScaleML), from the European Union’s Horizon 2020 research
  and innovation programme under the Marie Skłodowska–Curie grant agreement No. 840605,
  from the Vienna Science and Technology Fund (WWTF) project WHATIF, ICT19-045, 2020-2024,
  and from the Austrian Science Fund (FWF) and netIDEE SCIENCE project P 33775-N.
article_processing_charge: No
arxiv: 1
author:
- first_name: Klaus-Tycho
  full_name: Foerster, Klaus-Tycho
  last_name: Foerster
- first_name: Janne
  full_name: Korhonen, Janne
  id: C5402D42-15BC-11E9-A202-CA2BE6697425
  last_name: Korhonen
- first_name: Ami
  full_name: Paz, Ami
  last_name: Paz
- first_name: Joel
  full_name: Rybicki, Joel
  id: 334EFD2E-F248-11E8-B48F-1D18A9856A87
  last_name: Rybicki
  orcid: 0000-0002-6432-6646
- first_name: Stefan
  full_name: Schmid, Stefan
  last_name: Schmid
citation:
  ama: 'Foerster K-T, Korhonen J, Paz A, Rybicki J, Schmid S. Input-dynamic distributed
    algorithms for communication networks. In: <i>Abstract Proceedings of the 2021
    ACM SIGMETRICS / International Conference on Measurement and Modeling of Computer
    Systems</i>. Association for Computing Machinery; 2021:71-72. doi:<a href="https://doi.org/10.1145/3410220.3453923">10.1145/3410220.3453923</a>'
  apa: 'Foerster, K.-T., Korhonen, J., Paz, A., Rybicki, J., &#38; Schmid, S. (2021).
    Input-dynamic distributed algorithms for communication networks. In <i>Abstract
    Proceedings of the 2021 ACM SIGMETRICS / International Conference on Measurement
    and Modeling of Computer Systems</i> (pp. 71–72). Virtual, Online: Association
    for Computing Machinery. <a href="https://doi.org/10.1145/3410220.3453923">https://doi.org/10.1145/3410220.3453923</a>'
  chicago: Foerster, Klaus-Tycho, Janne Korhonen, Ami Paz, Joel Rybicki, and Stefan
    Schmid. “Input-Dynamic Distributed Algorithms for Communication Networks.” In
    <i>Abstract Proceedings of the 2021 ACM SIGMETRICS / International Conference
    on Measurement and Modeling of Computer Systems</i>, 71–72. Association for Computing
    Machinery, 2021. <a href="https://doi.org/10.1145/3410220.3453923">https://doi.org/10.1145/3410220.3453923</a>.
  ieee: K.-T. Foerster, J. Korhonen, A. Paz, J. Rybicki, and S. Schmid, “Input-dynamic
    distributed algorithms for communication networks,” in <i>Abstract Proceedings
    of the 2021 ACM SIGMETRICS / International Conference on Measurement and Modeling
    of Computer Systems</i>, Virtual, Online, 2021, pp. 71–72.
  ista: 'Foerster K-T, Korhonen J, Paz A, Rybicki J, Schmid S. 2021. Input-dynamic
    distributed algorithms for communication networks. Abstract Proceedings of the
    2021 ACM SIGMETRICS / International Conference on Measurement and Modeling of
    Computer Systems. SIGMETRICS: International Conference on Measurement and Modeling
    of Computer Systems, 71–72.'
  mla: Foerster, Klaus-Tycho, et al. “Input-Dynamic Distributed Algorithms for Communication
    Networks.” <i>Abstract Proceedings of the 2021 ACM SIGMETRICS / International
    Conference on Measurement and Modeling of Computer Systems</i>, Association for
    Computing Machinery, 2021, pp. 71–72, doi:<a href="https://doi.org/10.1145/3410220.3453923">10.1145/3410220.3453923</a>.
  short: K.-T. Foerster, J. Korhonen, A. Paz, J. Rybicki, S. Schmid, in:, Abstract
    Proceedings of the 2021 ACM SIGMETRICS / International Conference on Measurement
    and Modeling of Computer Systems, Association for Computing Machinery, 2021, pp.
    71–72.
conference:
  end_date: 2021-06-18
  location: Virtual, Online
  name: 'SIGMETRICS: International Conference on Measurement and Modeling of Computer
    Systems'
  start_date: 2021-06-14
date_created: 2022-03-18T08:48:41Z
date_published: 2021-05-01T00:00:00Z
date_updated: 2023-09-26T10:40:55Z
day: '01'
department:
- _id: DaAl
doi: 10.1145/3410220.3453923
ec_funded: 1
external_id:
  arxiv:
  - '2005.07637'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2005.07637
month: '05'
oa: 1
oa_version: Preprint
page: 71-72
project:
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '805223'
  name: Elastic Coordination for Scalable Machine Learning
- _id: 26A5D39A-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '840605'
  name: Coordination in constrained and natural distributed systems
publication: Abstract Proceedings of the 2021 ACM SIGMETRICS / International Conference
  on Measurement and Modeling of Computer Systems
publication_identifier:
  isbn:
  - '9781450380720'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
related_material:
  record:
  - id: '10855'
    relation: extended_version
    status: public
scopus_import: '1'
status: public
title: Input-dynamic distributed algorithms for communication networks
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '10855'
abstract:
- lang: eng
  text: 'Consider a distributed task where the communication network is fixed but
    the local inputs given to the nodes of the distributed system may change over
    time. In this work, we explore the following question: if some of the local inputs
    change, can an existing solution be updated efficiently, in a dynamic and distributed
    manner? To address this question, we define the batch dynamic \congest model in
    which we are given a bandwidth-limited communication network and a dynamic edge
    labelling defines the problem input. The task is to maintain a solution to a graph
    problem on the labeled graph under batch changes. We investigate, when a batch
    of α edge label changes arrive, \beginitemize \item how much time as a function
    of α we need to update an existing solution, and \item how much information the
    nodes have to keep in local memory between batches in order to update the solution
    quickly. \enditemize Our work lays the foundations for the theory of input-dynamic
    distributed network algorithms. We give a general picture of the complexity landscape
    in this model, design both universal algorithms and algorithms for concrete problems,
    and present a general framework for lower bounds. In particular, we derive non-trivial
    upper bounds for two selected, contrasting problems: maintaining a minimum spanning
    tree and detecting cliques.'
acknowledgement: "We thank Jukka Suomela for discussions. We also thank our shepherd
  Mohammad Hajiesmaili\r\nand the reviewers for their time and suggestions on how
  to improve the paper. This project\r\nhas received funding from the European Research
  Council (ERC) under the European Union’s\r\nHorizon 2020 research and innovation
  programme (grant agreement No 805223 ScaleML), from the European Union’s Horizon
  2020 research and innovation programme under the Marie\r\nSk lodowska–Curie grant
  agreement No. 840605, from the Vienna Science and Technology Fund (WWTF) project
  WHATIF, ICT19-045, 2020-2024, and from the Austrian Science Fund (FWF) and netIDEE
  SCIENCE project P 33775-N."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Klaus-Tycho
  full_name: Foerster, Klaus-Tycho
  last_name: Foerster
- first_name: Janne
  full_name: Korhonen, Janne
  id: C5402D42-15BC-11E9-A202-CA2BE6697425
  last_name: Korhonen
- first_name: Ami
  full_name: Paz, Ami
  last_name: Paz
- first_name: Joel
  full_name: Rybicki, Joel
  id: 334EFD2E-F248-11E8-B48F-1D18A9856A87
  last_name: Rybicki
  orcid: 0000-0002-6432-6646
- first_name: Stefan
  full_name: Schmid, Stefan
  last_name: Schmid
citation:
  ama: Foerster K-T, Korhonen J, Paz A, Rybicki J, Schmid S. Input-dynamic distributed
    algorithms for communication networks. <i>Proceedings of the ACM on Measurement
    and Analysis of Computing Systems</i>. 2021;5(1):1-33. doi:<a href="https://doi.org/10.1145/3447384">10.1145/3447384</a>
  apa: Foerster, K.-T., Korhonen, J., Paz, A., Rybicki, J., &#38; Schmid, S. (2021).
    Input-dynamic distributed algorithms for communication networks. <i>Proceedings
    of the ACM on Measurement and Analysis of Computing Systems</i>. Association for
    Computing Machinery. <a href="https://doi.org/10.1145/3447384">https://doi.org/10.1145/3447384</a>
  chicago: Foerster, Klaus-Tycho, Janne Korhonen, Ami Paz, Joel Rybicki, and Stefan
    Schmid. “Input-Dynamic Distributed Algorithms for Communication Networks.” <i>Proceedings
    of the ACM on Measurement and Analysis of Computing Systems</i>. Association for
    Computing Machinery, 2021. <a href="https://doi.org/10.1145/3447384">https://doi.org/10.1145/3447384</a>.
  ieee: K.-T. Foerster, J. Korhonen, A. Paz, J. Rybicki, and S. Schmid, “Input-dynamic
    distributed algorithms for communication networks,” <i>Proceedings of the ACM
    on Measurement and Analysis of Computing Systems</i>, vol. 5, no. 1. Association
    for Computing Machinery, pp. 1–33, 2021.
  ista: Foerster K-T, Korhonen J, Paz A, Rybicki J, Schmid S. 2021. Input-dynamic
    distributed algorithms for communication networks. Proceedings of the ACM on Measurement
    and Analysis of Computing Systems. 5(1), 1–33.
  mla: Foerster, Klaus-Tycho, et al. “Input-Dynamic Distributed Algorithms for Communication
    Networks.” <i>Proceedings of the ACM on Measurement and Analysis of Computing
    Systems</i>, vol. 5, no. 1, Association for Computing Machinery, 2021, pp. 1–33,
    doi:<a href="https://doi.org/10.1145/3447384">10.1145/3447384</a>.
  short: K.-T. Foerster, J. Korhonen, A. Paz, J. Rybicki, S. Schmid, Proceedings of
    the ACM on Measurement and Analysis of Computing Systems 5 (2021) 1–33.
date_created: 2022-03-18T09:10:27Z
date_published: 2021-03-01T00:00:00Z
date_updated: 2023-09-26T10:40:55Z
day: '01'
department:
- _id: DaAl
doi: 10.1145/3447384
ec_funded: 1
external_id:
  arxiv:
  - '2005.07637'
intvolume: '         5'
issue: '1'
keyword:
- Computer Networks and Communications
- Hardware and Architecture
- Safety
- Risk
- Reliability and Quality
- Computer Science (miscellaneous)
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2005.07637
month: '03'
oa: 1
oa_version: Preprint
page: 1-33
project:
- _id: 26A5D39A-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '840605'
  name: Coordination in constrained and natural distributed systems
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '805223'
  name: Elastic Coordination for Scalable Machine Learning
publication: Proceedings of the ACM on Measurement and Analysis of Computing Systems
publication_identifier:
  issn:
  - 2476-1249
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
related_material:
  record:
  - id: '10854'
    relation: shorter_version
    status: public
scopus_import: '1'
status: public
title: Input-dynamic distributed algorithms for communication networks
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2021'
...
---
_id: '10856'
abstract:
- lang: eng
  text: "We study the properties of the maximal volume k-dimensional sections of the
    n-dimensional cube [−1, 1]n. We obtain a first order necessary condition for a
    k-dimensional subspace to be a local maximizer of the volume of such sections,
    which we formulate in a geometric way. We estimate the length of the projection
    of a vector of the standard basis of Rn onto a k-dimensional subspace that maximizes
    the volume of the intersection. We \x1Cnd the optimal upper bound on the volume
    of a planar section of the cube [−1, 1]n , n ≥ 2."
acknowledgement: "The authors acknowledge the support of the grant of the Russian
  Government N 075-15-\r\n2019-1926. G.I.was supported also by the SwissNational Science
  Foundation grant 200021-179133. The authors are very grateful to the anonymous reviewer
  for valuable remarks."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Grigory
  full_name: Ivanov, Grigory
  id: 87744F66-5C6F-11EA-AFE0-D16B3DDC885E
  last_name: Ivanov
- first_name: Igor
  full_name: Tsiutsiurupa, Igor
  last_name: Tsiutsiurupa
citation:
  ama: Ivanov G, Tsiutsiurupa I. On the volume of sections of the cube. <i>Analysis
    and Geometry in Metric Spaces</i>. 2021;9(1):1-18. doi:<a href="https://doi.org/10.1515/agms-2020-0103">10.1515/agms-2020-0103</a>
  apa: Ivanov, G., &#38; Tsiutsiurupa, I. (2021). On the volume of sections of the
    cube. <i>Analysis and Geometry in Metric Spaces</i>. De Gruyter. <a href="https://doi.org/10.1515/agms-2020-0103">https://doi.org/10.1515/agms-2020-0103</a>
  chicago: Ivanov, Grigory, and Igor Tsiutsiurupa. “On the Volume of Sections of the
    Cube.” <i>Analysis and Geometry in Metric Spaces</i>. De Gruyter, 2021. <a href="https://doi.org/10.1515/agms-2020-0103">https://doi.org/10.1515/agms-2020-0103</a>.
  ieee: G. Ivanov and I. Tsiutsiurupa, “On the volume of sections of the cube,” <i>Analysis
    and Geometry in Metric Spaces</i>, vol. 9, no. 1. De Gruyter, pp. 1–18, 2021.
  ista: Ivanov G, Tsiutsiurupa I. 2021. On the volume of sections of the cube. Analysis
    and Geometry in Metric Spaces. 9(1), 1–18.
  mla: Ivanov, Grigory, and Igor Tsiutsiurupa. “On the Volume of Sections of the Cube.”
    <i>Analysis and Geometry in Metric Spaces</i>, vol. 9, no. 1, De Gruyter, 2021,
    pp. 1–18, doi:<a href="https://doi.org/10.1515/agms-2020-0103">10.1515/agms-2020-0103</a>.
  short: G. Ivanov, I. Tsiutsiurupa, Analysis and Geometry in Metric Spaces 9 (2021)
    1–18.
date_created: 2022-03-18T09:25:14Z
date_published: 2021-01-29T00:00:00Z
date_updated: 2023-08-17T07:07:58Z
day: '29'
ddc:
- '510'
department:
- _id: UlWa
doi: 10.1515/agms-2020-0103
external_id:
  arxiv:
  - '2004.02674'
  isi:
  - '000734286800001'
file:
- access_level: open_access
  checksum: 7e615ac8489f5eae580b6517debfdc53
  content_type: application/pdf
  creator: dernst
  date_created: 2022-03-18T09:31:59Z
  date_updated: 2022-03-18T09:31:59Z
  file_id: '10857'
  file_name: 2021_AnalysisMetricSpaces_Ivanov.pdf
  file_size: 789801
  relation: main_file
  success: 1
file_date_updated: 2022-03-18T09:31:59Z
has_accepted_license: '1'
intvolume: '         9'
isi: 1
issue: '1'
keyword:
- Applied Mathematics
- Geometry and Topology
- Analysis
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 1-18
publication: Analysis and Geometry in Metric Spaces
publication_identifier:
  issn:
  - 2299-3274
publication_status: published
publisher: De Gruyter
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the volume of sections of the cube
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 9
year: '2021'
...
---
_id: '10858'
abstract:
- lang: eng
  text: The cost-effective conversion of low-grade heat into electricity using thermoelectric
    devices requires developing alternative materials and material processing technologies
    able to reduce the currently high device manufacturing costs. In this direction,
    thermoelectric materials that do not rely on rare or toxic elements such as tellurium
    or lead need to be produced using high-throughput technologies not involving high
    temperatures and long processes. Bi2Se3 is an obvious possible Te-free alternative
    to Bi2Te3 for ambient temperature thermoelectric applications, but its performance
    is still low for practical applications, and additional efforts toward finding
    proper dopants are required. Here, we report a scalable method to produce Bi2Se3
    nanosheets at low synthesis temperatures. We studied the influence of different
    dopants on the thermoelectric properties of this material. Among the elements
    tested, we demonstrated that Sn doping resulted in the best performance. Sn incorporation
    resulted in a significant improvement to the Bi2Se3 Seebeck coefficient and a
    reduction in the thermal conductivity in the direction of the hot-press axis,
    resulting in an overall 60% improvement in the thermoelectric figure of merit
    of Bi2Se3.
acknowledgement: "M.L., Y.Z., T.Z. and K.X. thank the China Scholarship Council for
  their scholarship\r\nsupport. Y.L. acknowledges funding from the European Union’s
  Horizon 2020 research and\r\ninnovation program under the Marie Sklodowska-Curie
  grant agreement No. 754411. J.L. thanks the ICREA Academia program and projects
  MICINN/FEDER RTI2018-093996-B-C31 and G.C. 2017 SGR 128. ICN2 acknowledges funding
  from the Generalitat de Catalunya 2017 SGR 327 and the Spanish MINECO ENE2017-85087-C3."
article_number: '1827'
article_processing_charge: No
article_type: original
author:
- first_name: Mengyao
  full_name: Li, Mengyao
  last_name: Li
- first_name: Yu
  full_name: Zhang, Yu
  last_name: Zhang
- first_name: Ting
  full_name: Zhang, Ting
  last_name: Zhang
- first_name: Yong
  full_name: Zuo, Yong
  last_name: Zuo
- first_name: Ke
  full_name: Xiao, Ke
  last_name: Xiao
- first_name: Jordi
  full_name: Arbiol, Jordi
  last_name: Arbiol
- first_name: Jordi
  full_name: Llorca, Jordi
  last_name: Llorca
- first_name: Yu
  full_name: Liu, Yu
  id: 2A70014E-F248-11E8-B48F-1D18A9856A87
  last_name: Liu
  orcid: 0000-0001-7313-6740
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: Li M, Zhang Y, Zhang T, et al. Enhanced thermoelectric performance of n-type
    Bi2Se3 nanosheets through Sn doping. <i>Nanomaterials</i>. 2021;11(7). doi:<a
    href="https://doi.org/10.3390/nano11071827">10.3390/nano11071827</a>
  apa: Li, M., Zhang, Y., Zhang, T., Zuo, Y., Xiao, K., Arbiol, J., … Cabot, A. (2021).
    Enhanced thermoelectric performance of n-type Bi2Se3 nanosheets through Sn doping.
    <i>Nanomaterials</i>. MDPI. <a href="https://doi.org/10.3390/nano11071827">https://doi.org/10.3390/nano11071827</a>
  chicago: Li, Mengyao, Yu Zhang, Ting Zhang, Yong Zuo, Ke Xiao, Jordi Arbiol, Jordi
    Llorca, Yu Liu, and Andreu Cabot. “Enhanced Thermoelectric Performance of N-Type
    Bi2Se3 Nanosheets through Sn Doping.” <i>Nanomaterials</i>. MDPI, 2021. <a href="https://doi.org/10.3390/nano11071827">https://doi.org/10.3390/nano11071827</a>.
  ieee: M. Li <i>et al.</i>, “Enhanced thermoelectric performance of n-type Bi2Se3
    nanosheets through Sn doping,” <i>Nanomaterials</i>, vol. 11, no. 7. MDPI, 2021.
  ista: Li M, Zhang Y, Zhang T, Zuo Y, Xiao K, Arbiol J, Llorca J, Liu Y, Cabot A.
    2021. Enhanced thermoelectric performance of n-type Bi2Se3 nanosheets through
    Sn doping. Nanomaterials. 11(7), 1827.
  mla: Li, Mengyao, et al. “Enhanced Thermoelectric Performance of N-Type Bi2Se3 Nanosheets
    through Sn Doping.” <i>Nanomaterials</i>, vol. 11, no. 7, 1827, MDPI, 2021, doi:<a
    href="https://doi.org/10.3390/nano11071827">10.3390/nano11071827</a>.
  short: M. Li, Y. Zhang, T. Zhang, Y. Zuo, K. Xiao, J. Arbiol, J. Llorca, Y. Liu,
    A. Cabot, Nanomaterials 11 (2021).
date_created: 2022-03-18T09:45:02Z
date_published: 2021-07-14T00:00:00Z
date_updated: 2023-08-17T07:08:30Z
day: '14'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.3390/nano11071827
ec_funded: 1
external_id:
  isi:
  - '000676570000001'
file:
- access_level: open_access
  checksum: f28a8b5cf80f5605828359bb398463b0
  content_type: application/pdf
  creator: dernst
  date_created: 2022-03-18T09:53:15Z
  date_updated: 2022-03-18T09:53:15Z
  file_id: '10859'
  file_name: 2021_Nanomaterials_Li.pdf
  file_size: 4867547
  relation: main_file
  success: 1
file_date_updated: 2022-03-18T09:53:15Z
has_accepted_license: '1'
intvolume: '        11'
isi: 1
issue: '7'
keyword:
- General Materials Science
- General Chemical Engineering
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Nanomaterials
publication_identifier:
  issn:
  - 2079-4991
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Enhanced thermoelectric performance of n-type Bi2Se3 nanosheets through Sn
  doping
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2021'
...
---
_id: '10860'
abstract:
- lang: eng
  text: A tight frame is the orthogonal projection of some orthonormal basis of Rn
    onto Rk. We show that a set of vectors is a tight frame if and only if the set
    of all cross products of these vectors is a tight frame. We reformulate a range
    of problems on the volume of projections (or sections) of regular polytopes in
    terms of tight frames and write a first-order necessary condition for local extrema
    of these problems. As applications, we prove new results for the problem of maximization
    of the volume of zonotopes.
acknowledgement: The author was supported by the Swiss National Science Foundation
  grant 200021_179133. The author acknowledges the financial support from the Ministry
  of Education and Science of the Russian Federation in the framework of MegaGrant
  no. 075-15-2019-1926.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Grigory
  full_name: Ivanov, Grigory
  id: 87744F66-5C6F-11EA-AFE0-D16B3DDC885E
  last_name: Ivanov
citation:
  ama: Ivanov G. Tight frames and related geometric problems. <i>Canadian Mathematical
    Bulletin</i>. 2021;64(4):942-963. doi:<a href="https://doi.org/10.4153/s000843952000096x">10.4153/s000843952000096x</a>
  apa: Ivanov, G. (2021). Tight frames and related geometric problems. <i>Canadian
    Mathematical Bulletin</i>. Canadian Mathematical Society. <a href="https://doi.org/10.4153/s000843952000096x">https://doi.org/10.4153/s000843952000096x</a>
  chicago: Ivanov, Grigory. “Tight Frames and Related Geometric Problems.” <i>Canadian
    Mathematical Bulletin</i>. Canadian Mathematical Society, 2021. <a href="https://doi.org/10.4153/s000843952000096x">https://doi.org/10.4153/s000843952000096x</a>.
  ieee: G. Ivanov, “Tight frames and related geometric problems,” <i>Canadian Mathematical
    Bulletin</i>, vol. 64, no. 4. Canadian Mathematical Society, pp. 942–963, 2021.
  ista: Ivanov G. 2021. Tight frames and related geometric problems. Canadian Mathematical
    Bulletin. 64(4), 942–963.
  mla: Ivanov, Grigory. “Tight Frames and Related Geometric Problems.” <i>Canadian
    Mathematical Bulletin</i>, vol. 64, no. 4, Canadian Mathematical Society, 2021,
    pp. 942–63, doi:<a href="https://doi.org/10.4153/s000843952000096x">10.4153/s000843952000096x</a>.
  short: G. Ivanov, Canadian Mathematical Bulletin 64 (2021) 942–963.
date_created: 2022-03-18T09:55:59Z
date_published: 2021-12-18T00:00:00Z
date_updated: 2023-09-05T12:43:09Z
day: '18'
department:
- _id: UlWa
doi: 10.4153/s000843952000096x
external_id:
  arxiv:
  - '1804.10055'
  isi:
  - '000730165300021'
intvolume: '        64'
isi: 1
issue: '4'
keyword:
- General Mathematics
- Tight frame
- Grassmannian
- zonotope
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1804.10055
month: '12'
oa: 1
oa_version: Preprint
page: 942-963
publication: Canadian Mathematical Bulletin
publication_identifier:
  eissn:
  - 1496-4287
  issn:
  - 0008-4395
publication_status: published
publisher: Canadian Mathematical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tight frames and related geometric problems
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 64
year: '2021'
...
---
_id: '10912'
abstract:
- lang: eng
  text: Brain dynamics display collective phenomena as diverse as neuronal oscillations
    and avalanches. Oscillations are rhythmic, with fluctuations occurring at a characteristic
    scale, whereas avalanches are scale-free cascades of neural activity. Here we
    show that such antithetic features can coexist in a very generic class of adaptive
    neural networks. In the most simple yet fully microscopic model from this class
    we make direct contact with human brain resting-state activity recordings via
    tractable inference of the model's two essential parameters. The inferred model
    quantitatively captures the dynamics over a broad range of scales, from single
    sensor fluctuations, collective behaviors of nearly-synchronous extreme events
    on multiple sensors, to neuronal avalanches unfolding over multiple sensors across
    multiple time-bins. Importantly, the inferred parameters correlate with model-independent
    signatures of "closeness to criticality", suggesting that the coexistence of scale-specific
    (neural oscillations) and scale-free (neuronal avalanches) dynamics in brain activity
    occurs close to a non-equilibrium critical point at the onset of self-sustained
    oscillations.
acknowledgement: "FL acknowledges support from the European Union’s Horizon 2020 research
  and innovation program under the Marie Sklodowska-Curie Grant Agreement No. 754411.
  GT\r\nacknowledges the support of the Austrian Science Fund (FWF) under Stand-Alone
  Grant\r\nNo. P34015."
article_processing_charge: No
arxiv: 1
author:
- first_name: Fabrizio
  full_name: Lombardi, Fabrizio
  id: A057D288-3E88-11E9-986D-0CF4E5697425
  last_name: Lombardi
  orcid: 0000-0003-2623-5249
- first_name: Selver
  full_name: Pepic, Selver
  id: F93245C4-C3CA-11E9-B4F0-C6F4E5697425
  last_name: Pepic
- first_name: Oren
  full_name: Shriki, Oren
  last_name: Shriki
- first_name: Gašper
  full_name: Tkačik, Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
- first_name: Daniele
  full_name: De Martino, Daniele
  last_name: De Martino
citation:
  ama: Lombardi F, Pepic S, Shriki O, Tkačik G, De Martino D. Quantifying the coexistence
    of neuronal oscillations and avalanches. doi:<a href="https://doi.org/10.48550/ARXIV.2108.06686">10.48550/ARXIV.2108.06686</a>
  apa: Lombardi, F., Pepic, S., Shriki, O., Tkačik, G., &#38; De Martino, D. (n.d.).
    Quantifying the coexistence of neuronal oscillations and avalanches. arXiv. <a
    href="https://doi.org/10.48550/ARXIV.2108.06686">https://doi.org/10.48550/ARXIV.2108.06686</a>
  chicago: Lombardi, Fabrizio, Selver Pepic, Oren Shriki, Gašper Tkačik, and Daniele
    De Martino. “Quantifying the Coexistence of Neuronal Oscillations and Avalanches.”
    arXiv, n.d. <a href="https://doi.org/10.48550/ARXIV.2108.06686">https://doi.org/10.48550/ARXIV.2108.06686</a>.
  ieee: F. Lombardi, S. Pepic, O. Shriki, G. Tkačik, and D. De Martino, “Quantifying
    the coexistence of neuronal oscillations and avalanches.” arXiv.
  ista: Lombardi F, Pepic S, Shriki O, Tkačik G, De Martino D. Quantifying the coexistence
    of neuronal oscillations and avalanches. <a href="https://doi.org/10.48550/ARXIV.2108.06686">10.48550/ARXIV.2108.06686</a>.
  mla: Lombardi, Fabrizio, et al. <i>Quantifying the Coexistence of Neuronal Oscillations
    and Avalanches</i>. arXiv, doi:<a href="https://doi.org/10.48550/ARXIV.2108.06686">10.48550/ARXIV.2108.06686</a>.
  short: F. Lombardi, S. Pepic, O. Shriki, G. Tkačik, D. De Martino, (n.d.).
date_created: 2022-03-21T11:41:28Z
date_published: 2021-08-17T00:00:00Z
date_updated: 2022-03-22T07:53:18Z
day: '17'
ddc:
- '570'
department:
- _id: GaTk
doi: 10.48550/ARXIV.2108.06686
ec_funded: 1
external_id:
  arxiv:
  - '2108.06686'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2108.06686
month: '08'
oa: 1
oa_version: Preprint
page: '37'
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: 626c45b5-2b32-11ec-9570-e509828c1ba6
  grant_number: P34015
  name: Efficient coding with biophysical realism
publication_status: submitted
publisher: arXiv
status: public
title: Quantifying the coexistence of neuronal oscillations and avalanches
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '11436'
abstract:
- lang: eng
  text: Asynchronous distributed algorithms are a popular way to reduce synchronization
    costs in large-scale optimization, and in particular for neural network training.
    However, for nonsmooth and nonconvex objectives, few convergence guarantees exist
    beyond cases where closed-form proximal operator solutions are available. As training
    most popular deep neural networks corresponds to optimizing nonsmooth and nonconvex
    objectives, there is a pressing need for such convergence guarantees. In this
    paper, we analyze for the first time the convergence of stochastic asynchronous
    optimization for this general class of objectives. In particular, we focus on
    stochastic subgradient methods allowing for block variable partitioning, where
    the shared model is asynchronously updated by concurrent processes. To this end,
    we use a probabilistic model which captures key features of real asynchronous
    scheduling between concurrent processes. Under this model, we establish convergence
    with probability one to an invariant set for stochastic subgradient methods with
    momentum. From a practical perspective, one issue with the family of algorithms
    that we consider is that they are not efficiently supported by machine learning
    frameworks, which mostly focus on distributed data-parallel strategies. To address
    this, we propose a new implementation strategy for shared-memory based training
    of deep neural networks for a partitioned but shared model in single- and multi-GPU
    settings. Based on this implementation, we achieve on average1.2x speed-up in
    comparison to state-of-the-art training methods for popular image classification
    tasks, without compromising accuracy.
acknowledgement: Vyacheslav Kungurtsev was supported by the OP VVV project CZ.02.1.01/0.0/0.0/16
  019/0000765 “Research Center for Informatics. Bapi Chatterjee was supported by the
  European Union’s Horizon 2020 research and innovation programme under the Marie
  Sklodowska-Curie grant agreement No. 754411 (ISTPlus). Dan Alistarh has received
  funding from the European Research Council (ERC) under the European Union’s Horizon
  2020 research and innovation programme (grant agreement No 805223 ScaleML).
article_processing_charge: No
arxiv: 1
author:
- first_name: Vyacheslav
  full_name: Kungurtsev, Vyacheslav
  last_name: Kungurtsev
- first_name: Malcolm
  full_name: Egan, Malcolm
  last_name: Egan
- first_name: Bapi
  full_name: Chatterjee, Bapi
  id: 3C41A08A-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
citation:
  ama: 'Kungurtsev V, Egan M, Chatterjee B, Alistarh D-A. Asynchronous optimization
    methods for efficient training of deep neural networks with guarantees. In: <i>35th
    AAAI Conference on Artificial Intelligence, AAAI 2021</i>. Vol 35. AAAI Press;
    2021:8209-8216.'
  apa: 'Kungurtsev, V., Egan, M., Chatterjee, B., &#38; Alistarh, D.-A. (2021). Asynchronous
    optimization methods for efficient training of deep neural networks with guarantees.
    In <i>35th AAAI Conference on Artificial Intelligence, AAAI 2021</i> (Vol. 35,
    pp. 8209–8216). Virtual, Online: AAAI Press.'
  chicago: Kungurtsev, Vyacheslav, Malcolm Egan, Bapi Chatterjee, and Dan-Adrian Alistarh.
    “Asynchronous Optimization Methods for Efficient Training of Deep Neural Networks
    with Guarantees.” In <i>35th AAAI Conference on Artificial Intelligence, AAAI
    2021</i>, 35:8209–16. AAAI Press, 2021.
  ieee: V. Kungurtsev, M. Egan, B. Chatterjee, and D.-A. Alistarh, “Asynchronous optimization
    methods for efficient training of deep neural networks with guarantees,” in <i>35th
    AAAI Conference on Artificial Intelligence, AAAI 2021</i>, Virtual, Online, 2021,
    vol. 35, no. 9B, pp. 8209–8216.
  ista: 'Kungurtsev V, Egan M, Chatterjee B, Alistarh D-A. 2021. Asynchronous optimization
    methods for efficient training of deep neural networks with guarantees. 35th AAAI
    Conference on Artificial Intelligence, AAAI 2021. AAAI: Conference on Artificial
    Intelligence vol. 35, 8209–8216.'
  mla: Kungurtsev, Vyacheslav, et al. “Asynchronous Optimization Methods for Efficient
    Training of Deep Neural Networks with Guarantees.” <i>35th AAAI Conference on
    Artificial Intelligence, AAAI 2021</i>, vol. 35, no. 9B, AAAI Press, 2021, pp.
    8209–16.
  short: V. Kungurtsev, M. Egan, B. Chatterjee, D.-A. Alistarh, in:, 35th AAAI Conference
    on Artificial Intelligence, AAAI 2021, AAAI Press, 2021, pp. 8209–8216.
conference:
  end_date: 2021-02-09
  location: Virtual, Online
  name: 'AAAI: Conference on Artificial Intelligence'
  start_date: 2021-02-02
date_created: 2022-06-05T22:01:52Z
date_published: 2021-05-18T00:00:00Z
date_updated: 2022-06-07T06:53:36Z
day: '18'
department:
- _id: DaAl
ec_funded: 1
external_id:
  arxiv:
  - '1905.11845'
intvolume: '        35'
issue: 9B
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.1905.11845'
month: '05'
oa: 1
oa_version: Preprint
page: 8209-8216
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '805223'
  name: Elastic Coordination for Scalable Machine Learning
publication: 35th AAAI Conference on Artificial Intelligence, AAAI 2021
publication_identifier:
  eissn:
  - 2374-3468
  isbn:
  - '9781713835974'
  issn:
  - 2159-5399
publication_status: published
publisher: AAAI Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Asynchronous optimization methods for efficient training of deep neural networks
  with guarantees
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 35
year: '2021'
...
---
_id: '11452'
abstract:
- lang: eng
  text: We study efficient distributed algorithms for the fundamental problem of principal
    component analysis and leading eigenvector computation on the sphere, when the
    data are randomly distributed among a set of computational nodes. We propose a
    new quantized variant of Riemannian gradient descent to solve this problem, and
    prove that the algorithm converges with high probability under a set of necessary
    spherical-convexity properties. We give bounds on the number of bits transmitted
    by the algorithm under common initialization schemes, and investigate the dependency
    on the problem dimension in each case.
acknowledgement: We would like to thank the anonymous reviewers for helpful comments
  and suggestions. We also thank Aurelien Lucchi and Antonio Orvieto for fruitful
  discussions at an early stage of this work. FA is partially supported by the SNSF
  under research project No. 192363 and conducted part of this work while at IST Austria
  under the European Union’s Horizon 2020 research and innovation programme (grant
  agreement No. 805223 ScaleML). PD partly conducted this work while at IST Austria
  and was supported by the European Union’s Horizon 2020 programme under the Marie
  Skłodowska-Curie grant agreement No. 754411.
article_processing_charge: No
arxiv: 1
author:
- first_name: Foivos
  full_name: Alimisis, Foivos
  last_name: Alimisis
- first_name: Peter
  full_name: Davies, Peter
  id: 11396234-BB50-11E9-B24C-90FCE5697425
  last_name: Davies
  orcid: 0000-0002-5646-9524
- first_name: Bart
  full_name: Vandereycken, Bart
  last_name: Vandereycken
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
citation:
  ama: 'Alimisis F, Davies P, Vandereycken B, Alistarh D-A. Distributed principal
    component analysis with limited communication. In: <i>Advances in Neural Information
    Processing Systems - 35th Conference on Neural Information Processing Systems</i>.
    Vol 4. Neural Information Processing Systems Foundation; 2021:2823-2834.'
  apa: 'Alimisis, F., Davies, P., Vandereycken, B., &#38; Alistarh, D.-A. (2021).
    Distributed principal component analysis with limited communication. In <i>Advances
    in Neural Information Processing Systems - 35th Conference on Neural Information
    Processing Systems</i> (Vol. 4, pp. 2823–2834). Virtual, Online: Neural Information
    Processing Systems Foundation.'
  chicago: Alimisis, Foivos, Peter Davies, Bart Vandereycken, and Dan-Adrian Alistarh.
    “Distributed Principal Component Analysis with Limited Communication.” In <i>Advances
    in Neural Information Processing Systems - 35th Conference on Neural Information
    Processing Systems</i>, 4:2823–34. Neural Information Processing Systems Foundation,
    2021.
  ieee: F. Alimisis, P. Davies, B. Vandereycken, and D.-A. Alistarh, “Distributed
    principal component analysis with limited communication,” in <i>Advances in Neural
    Information Processing Systems - 35th Conference on Neural Information Processing
    Systems</i>, Virtual, Online, 2021, vol. 4, pp. 2823–2834.
  ista: 'Alimisis F, Davies P, Vandereycken B, Alistarh D-A. 2021. Distributed principal
    component analysis with limited communication. Advances in Neural Information
    Processing Systems - 35th Conference on Neural Information Processing Systems.
    NeurIPS: Neural Information Processing Systems vol. 4, 2823–2834.'
  mla: Alimisis, Foivos, et al. “Distributed Principal Component Analysis with Limited
    Communication.” <i>Advances in Neural Information Processing Systems - 35th Conference
    on Neural Information Processing Systems</i>, vol. 4, Neural Information Processing
    Systems Foundation, 2021, pp. 2823–34.
  short: F. Alimisis, P. Davies, B. Vandereycken, D.-A. Alistarh, in:, Advances in
    Neural Information Processing Systems - 35th Conference on Neural Information
    Processing Systems, Neural Information Processing Systems Foundation, 2021, pp.
    2823–2834.
conference:
  end_date: 2021-12-14
  location: Virtual, Online
  name: 'NeurIPS: Neural Information Processing Systems'
  start_date: 2021-12-06
date_created: 2022-06-19T22:01:58Z
date_published: 2021-12-01T00:00:00Z
date_updated: 2022-06-20T08:31:52Z
day: '01'
department:
- _id: DaAl
ec_funded: 1
external_id:
  arxiv:
  - '2110.14391'
intvolume: '         4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://proceedings.neurips.cc/paper/2021/file/1680e9fa7b4dd5d62ece800239bb53bd-Paper.pdf
month: '12'
oa: 1
oa_version: Published Version
page: 2823-2834
project:
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '805223'
  name: Elastic Coordination for Scalable Machine Learning
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Advances in Neural Information Processing Systems - 35th Conference on
  Neural Information Processing Systems
publication_identifier:
  isbn:
  - '9781713845393'
  issn:
  - 1049-5258
publication_status: published
publisher: Neural Information Processing Systems Foundation
quality_controlled: '1'
scopus_import: '1'
status: public
title: Distributed principal component analysis with limited communication
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 4
year: '2021'
...
---
_id: '11453'
abstract:
- lang: eng
  text: "Neuronal computations depend on synaptic connectivity and intrinsic electrophysiological
    properties. Synaptic connectivity determines which inputs from presynaptic neurons
    are integrated, while cellular properties determine how inputs are filtered over
    time. Unlike their biological counterparts, most computational approaches to learning
    in simulated neural networks are limited to changes in synaptic connectivity.
    However, if intrinsic parameters change, neural computations are altered drastically.
    Here, we include the parameters that determine the intrinsic properties,\r\ne.g.,
    time constants and reset potential, into the learning paradigm. Using sparse feedback
    signals that indicate target spike times, and gradient-based parameter updates,
    we show that the intrinsic parameters can be learned along with the synaptic weights
    to produce specific input-output functions. Specifically, we use a teacher-student
    paradigm in which a randomly initialised leaky integrate-and-fire or resonate-and-fire
    neuron must recover the parameters of a teacher neuron. We show that complex temporal
    functions can be learned online and without backpropagation through time, relying
    on event-based updates only. Our results are a step towards online learning of
    neural computations from ungraded and unsigned sparse feedback signals with a
    biologically inspired learning mechanism."
acknowledgement: We would like to thank Professor Dr. Henning Sprekeler for his valuable
  suggestions and Dr. Andrew Saxe, Milan Klöwer and Anna Wallis for their constructive
  feedback on the manuscript. Lukas Braun was supported by the Network of European
  Neuroscience Schools through their NENS Exchange Grant program, by the European
  Union through their European Community Action Scheme for the Mobility of University
  Students, the Woodward Scholarship awarded by Wadham College, Oxford and the Medical
  Research Council [MR/N013468/1]. Tim P. Vogels was supported by a Wellcome Trust
  Senior Research Fellowship [214316/Z/18/Z].
article_processing_charge: No
author:
- first_name: Lukas
  full_name: Braun, Lukas
  last_name: Braun
- first_name: Tim P
  full_name: Vogels, Tim P
  id: CB6FF8D2-008F-11EA-8E08-2637E6697425
  last_name: Vogels
  orcid: 0000-0003-3295-6181
citation:
  ama: 'Braun L, Vogels TP. Online learning of neural computations from sparse temporal
    feedback. In: <i>Advances in Neural Information Processing Systems - 35th Conference
    on Neural Information Processing Systems</i>. Vol 20. Neural Information Processing
    Systems Foundation; 2021:16437-16450.'
  apa: 'Braun, L., &#38; Vogels, T. P. (2021). Online learning of neural computations
    from sparse temporal feedback. In <i>Advances in Neural Information Processing
    Systems - 35th Conference on Neural Information Processing Systems</i> (Vol. 20,
    pp. 16437–16450). Virtual, Online: Neural Information Processing Systems Foundation.'
  chicago: Braun, Lukas, and Tim P Vogels. “Online Learning of Neural Computations
    from Sparse Temporal Feedback.” In <i>Advances in Neural Information Processing
    Systems - 35th Conference on Neural Information Processing Systems</i>, 20:16437–50.
    Neural Information Processing Systems Foundation, 2021.
  ieee: L. Braun and T. P. Vogels, “Online learning of neural computations from sparse
    temporal feedback,” in <i>Advances in Neural Information Processing Systems -
    35th Conference on Neural Information Processing Systems</i>, Virtual, Online,
    2021, vol. 20, pp. 16437–16450.
  ista: 'Braun L, Vogels TP. 2021. Online learning of neural computations from sparse
    temporal feedback. Advances in Neural Information Processing Systems - 35th Conference
    on Neural Information Processing Systems. NeurIPS: Neural Information Processing
    Systems vol. 20, 16437–16450.'
  mla: Braun, Lukas, and Tim P. Vogels. “Online Learning of Neural Computations from
    Sparse Temporal Feedback.” <i>Advances in Neural Information Processing Systems
    - 35th Conference on Neural Information Processing Systems</i>, vol. 20, Neural
    Information Processing Systems Foundation, 2021, pp. 16437–50.
  short: L. Braun, T.P. Vogels, in:, Advances in Neural Information Processing Systems
    - 35th Conference on Neural Information Processing Systems, Neural Information
    Processing Systems Foundation, 2021, pp. 16437–16450.
conference:
  end_date: 2021-12-14
  location: Virtual, Online
  name: 'NeurIPS: Neural Information Processing Systems'
  start_date: 2021-12-06
date_created: 2022-06-19T22:01:59Z
date_published: 2021-12-01T00:00:00Z
date_updated: 2022-06-20T07:12:58Z
day: '01'
department:
- _id: TiVo
intvolume: '        20'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://proceedings.neurips.cc/paper/2021/file/88e1ce84f9feef5a08d0df0334c53468-Paper.pdf
month: '12'
oa: 1
oa_version: Published Version
page: 16437-16450
project:
- _id: c084a126-5a5b-11eb-8a69-d75314a70a87
  grant_number: 214316/Z/18/Z
  name: What’s in a memory? Spatiotemporal dynamics in strongly coupled recurrent
    neuronal networks.
publication: Advances in Neural Information Processing Systems - 35th Conference on
  Neural Information Processing Systems
publication_identifier:
  isbn:
  - '9781713845393'
  issn:
  - 1049-5258
publication_status: published
publisher: Neural Information Processing Systems Foundation
quality_controlled: '1'
scopus_import: '1'
status: public
title: Online learning of neural computations from sparse temporal feedback
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 20
year: '2021'
...
---
_id: '11458'
abstract:
- lang: eng
  text: 'The increasing computational requirements of deep neural networks (DNNs)
    have led to significant interest in obtaining DNN models that are sparse, yet
    accurate. Recent work has investigated the even harder case of sparse training,
    where the DNN weights are, for as much as possible, already sparse to reduce computational
    costs during training. Existing sparse training methods are often empirical and
    can have lower accuracy relative to the dense baseline. In this paper, we present
    a general approach called Alternating Compressed/DeCompressed (AC/DC) training
    of DNNs, demonstrate convergence for a variant of the algorithm, and show that
    AC/DC outperforms existing sparse training methods in accuracy at similar computational
    budgets; at high sparsity levels, AC/DC even outperforms existing methods that
    rely on accurate pre-trained dense models. An important property of AC/DC is that
    it allows co-training of dense and sparse models, yielding accurate sparse–dense
    model pairs at the end of the training process. This is useful in practice, where
    compressed variants may be desirable for deployment in resource-constrained settings
    without re-doing the entire training flow, and also provides us with insights
    into the accuracy gap between dense and compressed models. The code is available
    at: https://github.com/IST-DASLab/ACDC.'
acknowledged_ssus:
- _id: ScienComp
acknowledgement: This project has received funding from the European Research Council
  (ERC) under the European Union’s Horizon 2020 research and innovation programme
  (grant agreement No 805223 ScaleML), and a CNRS PEPS grant. This research was supported
  by the Scientific Service Units (SSU) of IST Austria through resources provided
  by Scientific Computing (SciComp). We would also like to thank Christoph Lampert
  for his feedback on an earlier version of this work, as well as for providing hardware
  for the Transformer-XL experiments.
article_processing_charge: No
arxiv: 1
author:
- first_name: Elena-Alexandra
  full_name: Peste, Elena-Alexandra
  id: 32D78294-F248-11E8-B48F-1D18A9856A87
  last_name: Peste
- first_name: Eugenia B
  full_name: Iofinova, Eugenia B
  id: f9a17499-f6e0-11ea-865d-fdf9a3f77117
  last_name: Iofinova
  orcid: 0000-0002-7778-3221
- first_name: Adrian
  full_name: Vladu, Adrian
  last_name: Vladu
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
citation:
  ama: 'Peste E-A, Iofinova EB, Vladu A, Alistarh D-A. AC/DC: Alternating Compressed/DeCompressed
    training of deep neural networks. In: <i>35th Conference on Neural Information
    Processing Systems</i>. Vol 34. Curran Associates; 2021:8557-8570.'
  apa: 'Peste, E.-A., Iofinova, E. B., Vladu, A., &#38; Alistarh, D.-A. (2021). AC/DC:
    Alternating Compressed/DeCompressed training of deep neural networks. In <i>35th
    Conference on Neural Information Processing Systems</i> (Vol. 34, pp. 8557–8570).
    Virtual, Online: Curran Associates.'
  chicago: 'Peste, Elena-Alexandra, Eugenia B Iofinova, Adrian Vladu, and Dan-Adrian
    Alistarh. “AC/DC: Alternating Compressed/DeCompressed Training of Deep Neural
    Networks.” In <i>35th Conference on Neural Information Processing Systems</i>,
    34:8557–70. Curran Associates, 2021.'
  ieee: 'E.-A. Peste, E. B. Iofinova, A. Vladu, and D.-A. Alistarh, “AC/DC: Alternating
    Compressed/DeCompressed training of deep neural networks,” in <i>35th Conference
    on Neural Information Processing Systems</i>, Virtual, Online, 2021, vol. 34,
    pp. 8557–8570.'
  ista: 'Peste E-A, Iofinova EB, Vladu A, Alistarh D-A. 2021. AC/DC: Alternating Compressed/DeCompressed
    training of deep neural networks. 35th Conference on Neural Information Processing
    Systems. NeurIPS: Neural Information Processing Systems vol. 34, 8557–8570.'
  mla: 'Peste, Elena-Alexandra, et al. “AC/DC: Alternating Compressed/DeCompressed
    Training of Deep Neural Networks.” <i>35th Conference on Neural Information Processing
    Systems</i>, vol. 34, Curran Associates, 2021, pp. 8557–70.'
  short: E.-A. Peste, E.B. Iofinova, A. Vladu, D.-A. Alistarh, in:, 35th Conference
    on Neural Information Processing Systems, Curran Associates, 2021, pp. 8557–8570.
conference:
  end_date: 2021-12-14
  location: Virtual, Online
  name: 'NeurIPS: Neural Information Processing Systems'
  start_date: 2021-12-06
date_created: 2022-06-20T12:11:53Z
date_published: 2021-12-06T00:00:00Z
date_updated: 2023-06-01T12:54:45Z
day: '6'
department:
- _id: GradSch
- _id: DaAl
ec_funded: 1
external_id:
  arxiv:
  - '2106.12379'
intvolume: '        34'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://proceedings.neurips.cc/paper/2021/file/48000647b315f6f00f913caa757a70b3-Paper.pdf
month: '12'
oa: 1
oa_version: Published Version
page: 8557-8570
project:
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '805223'
  name: Elastic Coordination for Scalable Machine Learning
publication: 35th Conference on Neural Information Processing Systems
publication_identifier:
  isbn:
  - '9781713845393'
  issn:
  - 1049-5258
publication_status: published
publisher: Curran Associates
quality_controlled: '1'
related_material:
  record:
  - id: '13074'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: 'AC/DC: Alternating Compressed/DeCompressed training of deep neural networks'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 34
year: '2021'
...
---
_id: '11463'
abstract:
- lang: eng
  text: "Efficiently approximating local curvature information of the loss function
    is a key tool for optimization and compression of deep neural networks. Yet, most
    existing methods to approximate second-order information have high computational\r\nor
    storage costs, which limits their practicality. In this work, we investigate matrix-free,
    linear-time approaches for estimating Inverse-Hessian Vector Products (IHVPs)
    for the case when the Hessian can be approximated as a sum of rank-one matrices,
    as in the classic approximation of the Hessian by the empirical Fisher matrix.
    We propose two new algorithms: the first is tailored towards network compression
    and can compute the IHVP for dimension d, if the Hessian is given as a sum of
    m rank-one matrices, using O(dm2) precomputation, O(dm) cost for computing the
    IHVP, and query cost O(m) for any single element of the inverse Hessian. The second
    algorithm targets an optimization setting, where we wish to compute the product
    between the inverse Hessian, estimated over a sliding window of optimization steps,
    and a given gradient direction, as required for preconditioned SGD. We give an
    algorithm with cost O(dm + m2) for computing the IHVP and O(dm + m3) for adding
    or removing any gradient from the sliding window. These\r\ntwo algorithms yield
    state-of-the-art results for network pruning and optimization with lower computational
    overhead relative to existing second-order methods. Implementations are available
    at [9] and [17]."
acknowledgement: We gratefully acknowledge funding the European Research Council (ERC)
  under the European Union’s Horizon 2020 research and innovation programme (grant
  agreement No 805223 ScaleML), as well as computational support from Amazon Web Services
  (AWS) EC2.
article_processing_charge: No
arxiv: 1
author:
- first_name: Elias
  full_name: Frantar, Elias
  id: 09a8f98d-ec99-11ea-ae11-c063a7b7fe5f
  last_name: Frantar
- first_name: Eldar
  full_name: Kurtic, Eldar
  id: 47beb3a5-07b5-11eb-9b87-b108ec578218
  last_name: Kurtic
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
citation:
  ama: 'Frantar E, Kurtic E, Alistarh D-A. M-FAC: Efficient matrix-free approximations
    of second-order information. In: <i>35th Conference on Neural Information Processing
    Systems</i>. Vol 34. Curran Associates; 2021:14873-14886.'
  apa: 'Frantar, E., Kurtic, E., &#38; Alistarh, D.-A. (2021). M-FAC: Efficient matrix-free
    approximations of second-order information. In <i>35th Conference on Neural Information
    Processing Systems</i> (Vol. 34, pp. 14873–14886). Virtual, Online: Curran Associates.'
  chicago: 'Frantar, Elias, Eldar Kurtic, and Dan-Adrian Alistarh. “M-FAC: Efficient
    Matrix-Free Approximations of Second-Order Information.” In <i>35th Conference
    on Neural Information Processing Systems</i>, 34:14873–86. Curran Associates,
    2021.'
  ieee: 'E. Frantar, E. Kurtic, and D.-A. Alistarh, “M-FAC: Efficient matrix-free
    approximations of second-order information,” in <i>35th Conference on Neural Information
    Processing Systems</i>, Virtual, Online, 2021, vol. 34, pp. 14873–14886.'
  ista: 'Frantar E, Kurtic E, Alistarh D-A. 2021. M-FAC: Efficient matrix-free approximations
    of second-order information. 35th Conference on Neural Information Processing
    Systems. NeurIPS: Neural Information Processing Systems vol. 34, 14873–14886.'
  mla: 'Frantar, Elias, et al. “M-FAC: Efficient Matrix-Free Approximations of Second-Order
    Information.” <i>35th Conference on Neural Information Processing Systems</i>,
    vol. 34, Curran Associates, 2021, pp. 14873–86.'
  short: E. Frantar, E. Kurtic, D.-A. Alistarh, in:, 35th Conference on Neural Information
    Processing Systems, Curran Associates, 2021, pp. 14873–14886.
conference:
  end_date: 2021-12-14
  location: Virtual, Online
  name: 'NeurIPS: Neural Information Processing Systems'
  start_date: 2021-12-06
date_created: 2022-06-26T22:01:35Z
date_published: 2021-12-06T00:00:00Z
date_updated: 2022-06-27T07:05:12Z
day: '06'
department:
- _id: DaAl
ec_funded: 1
external_id:
  arxiv:
  - '2010.08222'
intvolume: '        34'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://proceedings.neurips.cc/paper/2021/file/7cfd5df443b4eb0d69886a583b33de4c-Paper.pdf
month: '12'
oa: 1
oa_version: Published Version
page: 14873-14886
project:
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '805223'
  name: Elastic Coordination for Scalable Machine Learning
publication: 35th Conference on Neural Information Processing Systems
publication_identifier:
  isbn:
  - '9781713845393'
  issn:
  - 1049-5258
publication_status: published
publisher: Curran Associates
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'M-FAC: Efficient matrix-free approximations of second-order information'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 34
year: '2021'
...
---
_id: '11464'
abstract:
- lang: eng
  text: "We consider a standard distributed optimisation setting where N machines,
    each holding a d-dimensional function\r\nfi, aim to jointly minimise the sum of
    the functions ∑Ni=1fi(x). This problem arises naturally in large-scale distributed
    optimisation, where a standard solution is to apply variants of (stochastic) gradient
    descent. We focus on the communication complexity of this problem: our main result
    provides the first fully unconditional bounds on total number of bits which need
    to be sent and received by the N machines to solve this problem under point-to-point
    communication, within a given error-tolerance. Specifically, we show that Ω(Ndlogd/Nε)
    total bits need to be communicated between the machines to find an additive ϵ-approximation
    to the minimum of ∑Ni=1fi(x). The result holds for both deterministic and randomised
    algorithms, and, importantly, requires no assumptions on the algorithm structure.
    The lower bound is tight under certain restrictions on parameter values, and is
    matched within constant factors for quadratic objectives by a new variant of quantised
    gradient descent, which we describe and analyse. Our results bring over tools
    from communication complexity to distributed optimisation, which has potential
    for further applications."
acknowledgement: We thank the NeurIPS reviewers for insightful comments that helped
  us improve the positioning of our results, as well as for pointing out the subsampling
  approach for complementing the randomised lower bound. We also thank Foivos Alimisis
  and Peter Davies for useful discussions. This project has received funding from
  the European Research Council (ERC) under the European Union’s Horizon 2020 research
  and innovation programme (grant agreement No 805223 ScaleML).
article_processing_charge: No
arxiv: 1
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Janne
  full_name: Korhonen, Janne
  id: C5402D42-15BC-11E9-A202-CA2BE6697425
  last_name: Korhonen
citation:
  ama: 'Alistarh D-A, Korhonen J. Towards tight communication lower bounds for distributed
    optimisation. In: <i>35th Conference on Neural Information Processing Systems</i>.
    Vol 34. Curran Associates; 2021:7254-7266.'
  apa: 'Alistarh, D.-A., &#38; Korhonen, J. (2021). Towards tight communication lower
    bounds for distributed optimisation. In <i>35th Conference on Neural Information
    Processing Systems</i> (Vol. 34, pp. 7254–7266). Virtual, Online: Curran Associates.'
  chicago: Alistarh, Dan-Adrian, and Janne Korhonen. “Towards Tight Communication
    Lower Bounds for Distributed Optimisation.” In <i>35th Conference on Neural Information
    Processing Systems</i>, 34:7254–66. Curran Associates, 2021.
  ieee: D.-A. Alistarh and J. Korhonen, “Towards tight communication lower bounds
    for distributed optimisation,” in <i>35th Conference on Neural Information Processing
    Systems</i>, Virtual, Online, 2021, vol. 34, pp. 7254–7266.
  ista: 'Alistarh D-A, Korhonen J. 2021. Towards tight communication lower bounds
    for distributed optimisation. 35th Conference on Neural Information Processing
    Systems. NeurIPS: Neural Information Processing Systems vol. 34, 7254–7266.'
  mla: Alistarh, Dan-Adrian, and Janne Korhonen. “Towards Tight Communication Lower
    Bounds for Distributed Optimisation.” <i>35th Conference on Neural Information
    Processing Systems</i>, vol. 34, Curran Associates, 2021, pp. 7254–66.
  short: D.-A. Alistarh, J. Korhonen, in:, 35th Conference on Neural Information Processing
    Systems, Curran Associates, 2021, pp. 7254–7266.
conference:
  end_date: 2021-12-14
  location: Virtual, Online
  name: 'NeurIPS: Neural Information Processing Systems'
  start_date: 2021-12-06
date_created: 2022-06-26T22:01:35Z
date_published: 2021-12-06T00:00:00Z
date_updated: 2022-06-27T06:54:31Z
day: '06'
department:
- _id: DaAl
ec_funded: 1
external_id:
  arxiv:
  - '2010.08222'
intvolume: '        34'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://proceedings.neurips.cc/paper/2021/file/3b92d18aa7a6176dd37d372bc2f1eb71-Paper.pdf
month: '12'
oa: 1
oa_version: Published Version
page: 7254-7266
project:
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '805223'
  name: Elastic Coordination for Scalable Machine Learning
publication: 35th Conference on Neural Information Processing Systems
publication_identifier:
  isbn:
  - '9781713845393'
  issn:
  - 1049-5258
publication_status: published
publisher: Curran Associates
quality_controlled: '1'
scopus_import: '1'
status: public
title: Towards tight communication lower bounds for distributed optimisation
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 34
year: '2021'
...
---
_id: '7883'
abstract:
- lang: eng
  text: All vertebrates have a spinal cord with dimensions and shape specific to their
    species. Yet how species‐specific organ size and shape are achieved is a fundamental
    unresolved question in biology. The formation and sculpting of organs begins during
    embryonic development. As it develops, the spinal cord extends in anterior–posterior
    direction in synchrony with the overall growth of the body. The dorsoventral (DV)
    and apicobasal lengths of the spinal cord neuroepithelium also change, while at
    the same time a characteristic pattern of neural progenitor subtypes along the
    DV axis is established and elaborated. At the basis of these changes in tissue
    size and shape are biophysical determinants, such as the change in cell number,
    cell size and shape, and anisotropic tissue growth. These processes are controlled
    by global tissue‐scale regulators, such as morphogen signaling gradients as well
    as mechanical forces. Current challenges in the field are to uncover how these
    tissue‐scale regulatory mechanisms are translated to the cellular and molecular
    level, and how regulation of distinct cellular processes gives rise to an overall
    defined size. Addressing these questions will help not only to achieve a better
    understanding of how size is controlled, but also of how tissue size is coordinated
    with the specification of pattern.
acknowledgement: 'Austrian Academy of Sciences, Grant/Award Number: DOC fellowship
  for Katarzyna Kuzmicz-Kowalska; Austrian Science Fund, Grant/Award Number: F78 (Stem
  Cell Modulation); H2020 European Research Council, Grant/Award Number: 680037'
article_number: e383
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Katarzyna
  full_name: Kuzmicz-Kowalska, Katarzyna
  id: 4CED352A-F248-11E8-B48F-1D18A9856A87
  last_name: Kuzmicz-Kowalska
- first_name: Anna
  full_name: Kicheva, Anna
  id: 3959A2A0-F248-11E8-B48F-1D18A9856A87
  last_name: Kicheva
  orcid: 0000-0003-4509-4998
citation:
  ama: 'Kuzmicz-Kowalska K, Kicheva A. Regulation of size and scale in vertebrate
    spinal cord development. <i>Wiley Interdisciplinary Reviews: Developmental Biology</i>.
    2021. doi:<a href="https://doi.org/10.1002/wdev.383">10.1002/wdev.383</a>'
  apa: 'Kuzmicz-Kowalska, K., &#38; Kicheva, A. (2021). Regulation of size and scale
    in vertebrate spinal cord development. <i>Wiley Interdisciplinary Reviews: Developmental
    Biology</i>. Wiley. <a href="https://doi.org/10.1002/wdev.383">https://doi.org/10.1002/wdev.383</a>'
  chicago: 'Kuzmicz-Kowalska, Katarzyna, and Anna Kicheva. “Regulation of Size and
    Scale in Vertebrate Spinal Cord Development.” <i>Wiley Interdisciplinary Reviews:
    Developmental Biology</i>. Wiley, 2021. <a href="https://doi.org/10.1002/wdev.383">https://doi.org/10.1002/wdev.383</a>.'
  ieee: 'K. Kuzmicz-Kowalska and A. Kicheva, “Regulation of size and scale in vertebrate
    spinal cord development,” <i>Wiley Interdisciplinary Reviews: Developmental Biology</i>.
    Wiley, 2021.'
  ista: 'Kuzmicz-Kowalska K, Kicheva A. 2021. Regulation of size and scale in vertebrate
    spinal cord development. Wiley Interdisciplinary Reviews: Developmental Biology.,
    e383.'
  mla: 'Kuzmicz-Kowalska, Katarzyna, and Anna Kicheva. “Regulation of Size and Scale
    in Vertebrate Spinal Cord Development.” <i>Wiley Interdisciplinary Reviews: Developmental
    Biology</i>, e383, Wiley, 2021, doi:<a href="https://doi.org/10.1002/wdev.383">10.1002/wdev.383</a>.'
  short: 'K. Kuzmicz-Kowalska, A. Kicheva, Wiley Interdisciplinary Reviews: Developmental
    Biology (2021).'
date_created: 2020-05-24T22:01:00Z
date_published: 2021-04-15T00:00:00Z
date_updated: 2024-03-07T15:03:00Z
day: '15'
ddc:
- '570'
department:
- _id: AnKi
doi: 10.1002/wdev.383
ec_funded: 1
external_id:
  isi:
  - '000531419400001'
  pmid:
  - '32391980'
file:
- access_level: open_access
  checksum: f0a7745d48afa09ea7025e876a0145a8
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-24T13:11:39Z
  date_updated: 2020-11-24T13:11:39Z
  file_id: '8800'
  file_name: 2020_WIREs_DevBio_KuzmiczKowalska.pdf
  file_size: 2527276
  relation: main_file
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  call_identifier: H2020
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  name: Coordination of Patterning And Growth In the Spinal Cord
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status: public
title: Regulation of size and scale in vertebrate spinal cord development
tmp:
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type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2021'
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---
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abstract:
- lang: eng
  text: Hartree–Fock theory has been justified as a mean-field approximation for fermionic
    systems. However, it suffers from some defects in predicting physical properties,
    making necessary a theory of quantum correlations. Recently, bosonization of many-body
    correlations has been rigorously justified as an upper bound on the correlation
    energy at high density with weak interactions. We review the bosonic approximation,
    deriving an effective Hamiltonian. We then show that for systems with Coulomb
    interaction this effective theory predicts collective excitations (plasmons) in
    accordance with the random phase approximation of Bohm and Pines, and with experimental
    observation.
article_number: '2060009'
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author:
- first_name: Niels P
  full_name: Benedikter, Niels P
  id: 3DE6C32A-F248-11E8-B48F-1D18A9856A87
  last_name: Benedikter
  orcid: 0000-0002-1071-6091
citation:
  ama: Benedikter NP. Bosonic collective excitations in Fermi gases. <i>Reviews in
    Mathematical Physics</i>. 2021;33(1). doi:<a href="https://doi.org/10.1142/s0129055x20600090">10.1142/s0129055x20600090</a>
  apa: Benedikter, N. P. (2021). Bosonic collective excitations in Fermi gases. <i>Reviews
    in Mathematical Physics</i>. World Scientific. <a href="https://doi.org/10.1142/s0129055x20600090">https://doi.org/10.1142/s0129055x20600090</a>
  chicago: Benedikter, Niels P. “Bosonic Collective Excitations in Fermi Gases.” <i>Reviews
    in Mathematical Physics</i>. World Scientific, 2021. <a href="https://doi.org/10.1142/s0129055x20600090">https://doi.org/10.1142/s0129055x20600090</a>.
  ieee: N. P. Benedikter, “Bosonic collective excitations in Fermi gases,” <i>Reviews
    in Mathematical Physics</i>, vol. 33, no. 1. World Scientific, 2021.
  ista: Benedikter NP. 2021. Bosonic collective excitations in Fermi gases. Reviews
    in Mathematical Physics. 33(1), 2060009.
  mla: Benedikter, Niels P. “Bosonic Collective Excitations in Fermi Gases.” <i>Reviews
    in Mathematical Physics</i>, vol. 33, no. 1, 2060009, World Scientific, 2021,
    doi:<a href="https://doi.org/10.1142/s0129055x20600090">10.1142/s0129055x20600090</a>.
  short: N.P. Benedikter, Reviews in Mathematical Physics 33 (2021).
date_created: 2020-05-28T16:47:55Z
date_published: 2021-01-01T00:00:00Z
date_updated: 2023-09-05T16:07:40Z
day: '01'
department:
- _id: RoSe
doi: 10.1142/s0129055x20600090
ec_funded: 1
external_id:
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  - '1910.08190'
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  - '000613313200010'
intvolume: '        33'
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issue: '1'
language:
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  url: https://arxiv.org/abs/1910.08190
month: '01'
oa: 1
oa_version: Preprint
project:
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  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
publication: Reviews in Mathematical Physics
publication_identifier:
  eissn:
  - 1793-6659
  issn:
  - 0129-055X
publication_status: published
publisher: World Scientific
quality_controlled: '1'
scopus_import: '1'
status: public
title: Bosonic collective excitations in Fermi gases
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 33
year: '2021'
...
---
_id: '7901'
abstract:
- lang: eng
  text: We derive rigorously the leading order of the correlation energy of a Fermi
    gas in a scaling regime of high density and weak interaction. The result verifies
    the prediction of the random-phase approximation. Our proof refines the method
    of collective bosonization in three dimensions. We approximately diagonalize an
    effective Hamiltonian describing approximately bosonic collective excitations
    around the Hartree–Fock state, while showing that gapless and non-collective excitations
    have only a negligible effect on the ground state energy.
acknowledgement: We thank Christian Hainzl for helpful discussions and a referee for
  very careful reading of the paper and many helpful suggestions. NB and RS were supported
  by the European Research Council (ERC) under the European Union’s Horizon 2020 research
  and innovation programme (grant agreement No. 694227). Part of the research of NB
  was conducted on the RZD18 Nice–Milan–Vienna–Moscow. NB thanks Elliott H. Lieb and
  Peter Otte for explanations about the Luttinger model. PTN has received funding
  from the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under
  Germany’s Excellence Strategy (EXC-2111-390814868). MP acknowledges financial support
  from the European Research Council (ERC) under the European Union’s Horizon 2020
  research and innovation programme (ERC StG MaMBoQ, grant agreement No. 802901).
  BS gratefully acknowledges financial support from the NCCR SwissMAP, from the Swiss
  National Science Foundation through the Grant “Dynamical and energetic properties
  of Bose-Einstein condensates” and from the European Research Council through the
  ERC-AdG CLaQS (grant agreement No. 834782). All authors acknowledge support for
  workshop participation from Mathematisches Forschungsinstitut Oberwolfach (Leibniz
  Association). NB, PTN, BS, and RS acknowledge support for workshop participation
  from Fondation des Treilles.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Niels P
  full_name: Benedikter, Niels P
  id: 3DE6C32A-F248-11E8-B48F-1D18A9856A87
  last_name: Benedikter
  orcid: 0000-0002-1071-6091
- first_name: Phan Thành
  full_name: Nam, Phan Thành
  last_name: Nam
- first_name: Marcello
  full_name: Porta, Marcello
  last_name: Porta
- first_name: Benjamin
  full_name: Schlein, Benjamin
  last_name: Schlein
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Benedikter NP, Nam PT, Porta M, Schlein B, Seiringer R. Correlation energy
    of a weakly interacting Fermi gas. <i>Inventiones Mathematicae</i>. 2021;225:885-979.
    doi:<a href="https://doi.org/10.1007/s00222-021-01041-5">10.1007/s00222-021-01041-5</a>
  apa: Benedikter, N. P., Nam, P. T., Porta, M., Schlein, B., &#38; Seiringer, R.
    (2021). Correlation energy of a weakly interacting Fermi gas. <i>Inventiones Mathematicae</i>.
    Springer. <a href="https://doi.org/10.1007/s00222-021-01041-5">https://doi.org/10.1007/s00222-021-01041-5</a>
  chicago: Benedikter, Niels P, Phan Thành Nam, Marcello Porta, Benjamin Schlein,
    and Robert Seiringer. “Correlation Energy of a Weakly Interacting Fermi Gas.”
    <i>Inventiones Mathematicae</i>. Springer, 2021. <a href="https://doi.org/10.1007/s00222-021-01041-5">https://doi.org/10.1007/s00222-021-01041-5</a>.
  ieee: N. P. Benedikter, P. T. Nam, M. Porta, B. Schlein, and R. Seiringer, “Correlation
    energy of a weakly interacting Fermi gas,” <i>Inventiones Mathematicae</i>, vol.
    225. Springer, pp. 885–979, 2021.
  ista: Benedikter NP, Nam PT, Porta M, Schlein B, Seiringer R. 2021. Correlation
    energy of a weakly interacting Fermi gas. Inventiones Mathematicae. 225, 885–979.
  mla: Benedikter, Niels P., et al. “Correlation Energy of a Weakly Interacting Fermi
    Gas.” <i>Inventiones Mathematicae</i>, vol. 225, Springer, 2021, pp. 885–979,
    doi:<a href="https://doi.org/10.1007/s00222-021-01041-5">10.1007/s00222-021-01041-5</a>.
  short: N.P. Benedikter, P.T. Nam, M. Porta, B. Schlein, R. Seiringer, Inventiones
    Mathematicae 225 (2021) 885–979.
date_created: 2020-05-28T16:48:20Z
date_published: 2021-05-03T00:00:00Z
date_updated: 2023-08-21T06:30:30Z
day: '03'
ddc:
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department:
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doi: 10.1007/s00222-021-01041-5
ec_funded: 1
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  name: IST Austria Open Access Fund
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title: Correlation energy of a weakly interacting Fermi gas
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