[{"article_type":"original","oa_version":"Preprint","year":"2023","date_updated":"2024-01-30T14:36:42Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","external_id":{"arxiv":["2208.10703"]},"publication_identifier":{"eissn":["1863-8899"],"issn":["1863-8880"]},"arxiv":1,"issue":"12","article_processing_charge":"No","article_number":"2200866","date_published":"2023-12-01T00:00:00Z","_id":"14489","abstract":[{"text":"Microwave-optics entanglement is a vital component for building hybrid quantum networks. Here, a new mechanism for preparing stationary entanglement between microwave and optical cavity fields in a cavity optomagnomechanical system is proposed. It consists of a magnon mode in a ferrimagnetic crystal that couples directly to a microwave cavity mode via the magnetic dipole interaction and indirectly to an optical cavity through the deformation displacement of the crystal. The mechanical displacement is induced by the magnetostrictive force and coupled to the optical cavity via radiation pressure. Both the opto- and magnomechanical couplings are dispersive. Magnon–phonon entanglement is created via magnomechanical parametric down-conversion, which is further distributed to optical and microwave photons via simultaneous optomechanical beamsplitter interaction and electromagnonic state-swap interaction, yielding stationary microwave-optics entanglement. The microwave-optics entanglement is robust against thermal noise, which will find broad potential applications in quantum networks and quantum information processing with hybrid quantum systems.","lang":"eng"}],"publication_status":"published","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2208.10703"}],"oa":1,"volume":17,"citation":{"ama":"Fan ZY, Qiu L, Gröblacher S, Li J. Microwave-optics entanglement via cavity optomagnomechanics. Laser and Photonics Reviews. 2023;17(12). doi:10.1002/lpor.202200866","apa":"Fan, Z. Y., Qiu, L., Gröblacher, S., & Li, J. (2023). Microwave-optics entanglement via cavity optomagnomechanics. Laser and Photonics Reviews. Wiley. https://doi.org/10.1002/lpor.202200866","short":"Z.Y. Fan, L. Qiu, S. Gröblacher, J. Li, Laser and Photonics Reviews 17 (2023).","mla":"Fan, Zhi Yuan, et al. “Microwave-Optics Entanglement via Cavity Optomagnomechanics.” Laser and Photonics Reviews, vol. 17, no. 12, 2200866, Wiley, 2023, doi:10.1002/lpor.202200866.","chicago":"Fan, Zhi Yuan, Liu Qiu, Simon Gröblacher, and Jie Li. “Microwave-Optics Entanglement via Cavity Optomagnomechanics.” Laser and Photonics Reviews. Wiley, 2023. https://doi.org/10.1002/lpor.202200866.","ista":"Fan ZY, Qiu L, Gröblacher S, Li J. 2023. Microwave-optics entanglement via cavity optomagnomechanics. Laser and Photonics Reviews. 17(12), 2200866.","ieee":"Z. Y. Fan, L. Qiu, S. Gröblacher, and J. Li, “Microwave-optics entanglement via cavity optomagnomechanics,” Laser and Photonics Reviews, vol. 17, no. 12. Wiley, 2023."},"title":"Microwave-optics entanglement via cavity optomagnomechanics","day":"01","type":"journal_article","author":[{"last_name":"Fan","first_name":"Zhi Yuan","full_name":"Fan, Zhi Yuan"},{"last_name":"Qiu","full_name":"Qiu, Liu","first_name":"Liu","id":"45e99c0d-1eb1-11eb-9b96-ed8ab2983cac","orcid":"0000-0003-4345-4267"},{"first_name":"Simon","full_name":"Gröblacher, Simon","last_name":"Gröblacher"},{"last_name":"Li","full_name":"Li, Jie","first_name":"Jie"}],"acknowledgement":"This work was supported by the National Key Research and Development Program of China (Grant no. 2022YFA1405200), the National Natural Science Foundation of China (Nos. 92265202), and the European Research Council (ERC CoG Q-ECHOS, 101001005).","language":[{"iso":"eng"}],"doi":"10.1002/lpor.202200866","month":"12","date_created":"2023-11-05T23:00:54Z","publisher":"Wiley","quality_controlled":"1","department":[{"_id":"JoFi"}],"publication":"Laser and Photonics Reviews","status":"public","intvolume":" 17"},{"oa_version":"Preprint","year":"2023","publication_identifier":{"eissn":["2575-8411"],"isbn":["9798350339864"]},"scopus_import":"1","external_id":{"arxiv":["2306.16006"]},"date_updated":"2023-11-30T10:54:51Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Payment channel networks (PCNs) are a promising solution to the scalability problem of cryptocurrencies. Any two users connected by a payment channel in the network can theoretically send an unbounded number of instant, costless transactions between them. Users who are not directly connected can also transact with each other in a multi-hop fashion. In this work, we study the incentive structure behind the creation of payment channel networks, particularly from the point of view of a single user that wants to join the network. We define a utility function for a new user in terms of expected revenue, expected fees, and the cost of creating channels, and then provide constant factor approximation algorithms that optimise the utility function given a certain budget. Additionally, we take a step back from a single user to the whole network and examine the parameter spaces under which simple graph topologies form a Nash equilibrium."}],"_id":"14490","date_published":"2023-10-11T00:00:00Z","article_processing_charge":"No","arxiv":1,"volume":2023,"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2306.16006"}],"publication_status":"published","author":[{"first_name":"Zeta","full_name":"Avarikioti, Zeta","last_name":"Avarikioti"},{"last_name":"Lizurej","first_name":"Tomasz","full_name":"Lizurej, Tomasz"},{"full_name":"Michalak, Tomasz","first_name":"Tomasz","last_name":"Michalak"},{"id":"2D82B818-F248-11E8-B48F-1D18A9856A87","last_name":"Yeo","full_name":"Yeo, Michelle X","first_name":"Michelle X"}],"type":"conference","day":"11","title":"Lightning creation games","conference":{"start_date":"2023-07-18","end_date":"2023-07-21","name":"ICDCS: International Conference on Distributed Computing Systems","location":"Hong Kong, China"},"citation":{"chicago":"Avarikioti, Zeta, Tomasz Lizurej, Tomasz Michalak, and Michelle X Yeo. “Lightning Creation Games.” In 43rd International Conference on Distributed Computing Systems, 2023:603–13. IEEE, 2023. https://doi.org/10.1109/ICDCS57875.2023.00037.","ista":"Avarikioti Z, Lizurej T, Michalak T, Yeo MX. 2023. Lightning creation games. 43rd International Conference on Distributed Computing Systems. ICDCS: International Conference on Distributed Computing Systems vol. 2023, 603–613.","ieee":"Z. Avarikioti, T. Lizurej, T. Michalak, and M. X. Yeo, “Lightning creation games,” in 43rd International Conference on Distributed Computing Systems, Hong Kong, China, 2023, vol. 2023, pp. 603–613.","mla":"Avarikioti, Zeta, et al. “Lightning Creation Games.” 43rd International Conference on Distributed Computing Systems, vol. 2023, IEEE, 2023, pp. 603–13, doi:10.1109/ICDCS57875.2023.00037.","short":"Z. Avarikioti, T. Lizurej, T. Michalak, M.X. Yeo, in:, 43rd International Conference on Distributed Computing Systems, IEEE, 2023, pp. 603–613.","ama":"Avarikioti Z, Lizurej T, Michalak T, Yeo MX. Lightning creation games. In: 43rd International Conference on Distributed Computing Systems. Vol 2023. IEEE; 2023:603-613. doi:10.1109/ICDCS57875.2023.00037","apa":"Avarikioti, Z., Lizurej, T., Michalak, T., & Yeo, M. X. (2023). Lightning creation games. In 43rd International Conference on Distributed Computing Systems (Vol. 2023, pp. 603–613). Hong Kong, China: IEEE. https://doi.org/10.1109/ICDCS57875.2023.00037"},"doi":"10.1109/ICDCS57875.2023.00037","language":[{"iso":"eng"}],"related_material":{"record":[{"id":"14506","relation":"dissertation_contains","status":"public"}]},"acknowledgement":"The work was partially supported by the Austrian Science Fund (FWF) through the project CoRaF (grant 2020388). It was also partially supported by NCN Grant 2019/35/B/ST6/04138 and ERC Grant 885666.","date_created":"2023-11-05T23:00:54Z","month":"10","page":"603-613","intvolume":" 2023","status":"public","publication":"43rd International Conference on Distributed Computing Systems","department":[{"_id":"KrPi"}],"quality_controlled":"1","publisher":"IEEE"},{"oa":1,"main_file_link":[{"url":"https://10.5281/ZENODO.8402426","open_access":"1"}],"publisher":"Zenodo","tmp":{"name":"Creative Commons Public Domain Dedication (CC0 1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","short":"CC0 (1.0)"},"status":"public","department":[{"_id":"FrPe"}],"article_processing_charge":"No","abstract":[{"lang":"eng","text":"We provide i) gridded initial conditions (.tif), ii) modeled gridded monthly outputs (.tif), and iii) modeled hourly outputs at the station locations (.txt) for the hydrological year 2019. Information about the variables and units can be found in the figures (.png) associated to each dataset. Details about the datasets can be found in the original publication by Buri and others (2023).\r\n\r\nBuri, P., Fatichi, S., Shaw, T. E., Miles, E. S., McCarthy, M. J., Fyffe, C. L., ... & Pellicciotti, F. (2023). Land Surface Modeling in the Himalayas: On the Importance of Evaporative Fluxes for the Water Balance of a High‐Elevation Catchment. Water Resources Research, 59(10), e2022WR033841. DOI: 10.1029/2022WR033841"}],"_id":"14494","date_published":"2023-10-03T00:00:00Z","date_created":"2023-11-07T08:01:39Z","month":"10","related_material":{"record":[{"status":"public","id":"14487","relation":"used_in_publication"}]},"doi":"10.5281/ZENODO.8402426","ddc":["550"],"date_updated":"2023-11-07T08:12:35Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Model output data to \"Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment\"","citation":{"short":"P. Buri, S. Fatichi, T. Shaw, E. Miles, M. McCarthy, C.L. Fyffe, S. Fugger, S. Ren, M. Kneib, A. Jouberton, J. Steiner, K. Fujita, F. Pellicciotti, (2023).","apa":"Buri, P., Fatichi, S., Shaw, T., Miles, E., McCarthy, M., Fyffe, C. L., … Pellicciotti, F. (2023). Model output data to “Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment.” Zenodo. https://doi.org/10.5281/ZENODO.8402426","ama":"Buri P, Fatichi S, Shaw T, et al. Model output data to “Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment.” 2023. doi:10.5281/ZENODO.8402426","ieee":"P. Buri et al., “Model output data to ‘Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment.’” Zenodo, 2023.","ista":"Buri P, Fatichi S, Shaw T, Miles E, McCarthy M, Fyffe CL, Fugger S, Ren S, Kneib M, Jouberton A, Steiner J, Fujita K, Pellicciotti F. 2023. Model output data to ‘Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment’, Zenodo, 10.5281/ZENODO.8402426.","chicago":"Buri, Pascal, Simone Fatichi, Thomas Shaw, Evan Miles, Michael McCarthy, Catriona Louise Fyffe, Stefan Fugger, et al. “Model Output Data to ‘Land Surface Modeling in the Himalayas: On the Importance of Evaporative Fluxes for the Water Balance of a High Elevation Catchment.’” Zenodo, 2023. https://doi.org/10.5281/ZENODO.8402426.","mla":"Buri, Pascal, et al. Model Output Data to “Land Surface Modeling in the Himalayas: On the Importance of Evaporative Fluxes for the Water Balance of a High Elevation Catchment.” Zenodo, 2023, doi:10.5281/ZENODO.8402426."},"type":"research_data_reference","author":[{"last_name":"Buri","full_name":"Buri, Pascal","first_name":"Pascal"},{"last_name":"Fatichi","first_name":"Simone","full_name":"Fatichi, Simone"},{"id":"3caa3f91-1f03-11ee-96ce-e0e553054d6e","last_name":"Shaw","full_name":"Shaw, Thomas","first_name":"Thomas"},{"last_name":"Miles","first_name":"Evan ","full_name":"Miles, Evan "},{"id":"22a2674a-61ce-11ee-94b5-d18813baf16f","first_name":"Michael","full_name":"McCarthy, Michael","last_name":"McCarthy"},{"id":"001b0422-8d15-11ed-bc51-cab6c037a228","last_name":"Fyffe","full_name":"Fyffe, Catriona Louise","first_name":"Catriona Louise"},{"full_name":"Fugger, Stefan","first_name":"Stefan","last_name":"Fugger"},{"first_name":"Shaoting","full_name":"Ren, Shaoting","last_name":"Ren"},{"last_name":"Kneib","first_name":"Marin","full_name":"Kneib, Marin"},{"last_name":"Jouberton","full_name":"Jouberton, Achille","first_name":"Achille"},{"last_name":"Steiner","first_name":"Jakob","full_name":"Steiner, Jakob"},{"last_name":"Fujita","first_name":"Koji","full_name":"Fujita, Koji"},{"full_name":"Pellicciotti, Francesca","first_name":"Francesca","last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","orcid":"0000-0002-5554-8087"}],"has_accepted_license":"1","year":"2023","oa_version":"Published Version","day":"03"},{"acknowledgement":"Kwan was supported for part of this work by ERC Starting Grant ‘RANDSTRUCT’ No. 101076777. Sah and Sawhney were supported by NSF Graduate Research Fellowship Program DGE-2141064. Sah was supported by the PD Soros Fellowship. Sauermann was supported by NSF Award DMS-2100157, and for part of this work by a Sloan Research Fellowship.","project":[{"name":"Randomness and structure in combinatorics","grant_number":"101076777","_id":"bd95085b-d553-11ed-ba76-e55d3349be45"}],"ddc":["510"],"doi":"10.1017/fmp.2023.17","language":[{"iso":"eng"}],"keyword":["Discrete Mathematics and Combinatorics","Geometry and Topology","Mathematical Physics","Statistics and Probability","Algebra and Number Theory","Analysis"],"title":"Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture","citation":{"short":"M.A. Kwan, A. Sah, L. Sauermann, M. Sawhney, Forum of Mathematics, Pi 11 (2023).","ama":"Kwan MA, Sah A, Sauermann L, Sawhney M. Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture. Forum of Mathematics, Pi. 2023;11. doi:10.1017/fmp.2023.17","apa":"Kwan, M. A., Sah, A., Sauermann, L., & Sawhney, M. (2023). Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture. Forum of Mathematics, Pi. Cambridge University Press. https://doi.org/10.1017/fmp.2023.17","chicago":"Kwan, Matthew Alan, Ashwin Sah, Lisa Sauermann, and Mehtaab Sawhney. “Anticoncentration in Ramsey Graphs and a Proof of the Erdős–McKay Conjecture.” Forum of Mathematics, Pi. Cambridge University Press, 2023. https://doi.org/10.1017/fmp.2023.17.","ista":"Kwan MA, Sah A, Sauermann L, Sawhney M. 2023. Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture. Forum of Mathematics, Pi. 11, e21.","ieee":"M. A. Kwan, A. Sah, L. Sauermann, and M. Sawhney, “Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture,” Forum of Mathematics, Pi, vol. 11. Cambridge University Press, 2023.","mla":"Kwan, Matthew Alan, et al. “Anticoncentration in Ramsey Graphs and a Proof of the Erdős–McKay Conjecture.” Forum of Mathematics, Pi, vol. 11, e21, Cambridge University Press, 2023, doi:10.1017/fmp.2023.17."},"type":"journal_article","author":[{"first_name":"Matthew Alan","full_name":"Kwan, Matthew Alan","last_name":"Kwan","id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3","orcid":"0000-0002-4003-7567"},{"last_name":"Sah","full_name":"Sah, Ashwin","first_name":"Ashwin"},{"last_name":"Sauermann","first_name":"Lisa","full_name":"Sauermann, Lisa"},{"full_name":"Sawhney, Mehtaab","first_name":"Mehtaab","last_name":"Sawhney"}],"day":"24","publisher":"Cambridge University Press","intvolume":" 11","status":"public","department":[{"_id":"MaKw"}],"quality_controlled":"1","publication":"Forum of Mathematics, Pi","date_created":"2023-11-07T09:02:48Z","month":"08","publication_identifier":{"issn":["2050-5086"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2023-11-07T09:18:57Z","scopus_import":"1","external_id":{"arxiv":["2208.02874"]},"year":"2023","has_accepted_license":"1","oa_version":"Published Version","article_type":"original","oa":1,"publication_status":"published","volume":11,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"file_date_updated":"2023-11-07T09:16:23Z","article_processing_charge":"Yes","arxiv":1,"date_published":"2023-08-24T00:00:00Z","_id":"14499","abstract":[{"lang":"eng","text":"An n-vertex graph is called C-Ramsey if it has no clique or independent set of size Clog2n (i.e., if it has near-optimal Ramsey behavior). In this paper, we study edge statistics in Ramsey graphs, in particular obtaining very precise control of the distribution of the number of edges in a random vertex subset of a C-Ramsey graph. This brings together two ongoing lines of research: the study of ‘random-like’ properties of Ramsey graphs and the study of small-ball probability for low-degree polynomials of independent random variables.\r\n\r\nThe proof proceeds via an ‘additive structure’ dichotomy on the degree sequence and involves a wide range of different tools from Fourier analysis, random matrix theory, the theory of Boolean functions, probabilistic combinatorics and low-rank approximation. In particular, a key ingredient is a new sharpened version of the quadratic Carbery–Wright theorem on small-ball probability for polynomials of Gaussians, which we believe is of independent interest. One of the consequences of our result is the resolution of an old conjecture of Erdős and McKay, for which Erdős reiterated in several of his open problem collections and for which he offered one of his notorious monetary prizes."}],"article_number":"e21","file":[{"checksum":"54b824098d59073cc87a308d458b0a3e","access_level":"open_access","date_updated":"2023-11-07T09:16:23Z","creator":"dernst","file_size":1218719,"file_name":"2023_ForumMathematics_Kwan.pdf","date_created":"2023-11-07T09:16:23Z","success":1,"file_id":"14500","relation":"main_file","content_type":"application/pdf"}]},{"file_date_updated":"2023-11-21T08:20:23Z","department":[{"_id":"FlSc"}],"tmp":{"short":"GNU AGPLv3 ","name":"GNU Affero General Public License v3.0","legal_code_url":"https://www.gnu.org/licenses/agpl-3.0.html"},"status":"public","publisher":"Institute of Science and Technology Austria","license":"https://choosealicense.com/licenses/agpl-3.0/","oa":1,"file":[{"checksum":"a8b9adeb53a4109dea4d5e39fa1acccf","access_level":"open_access","date_updated":"2023-11-08T20:23:07Z","creator":"fschur","file_size":347641117,"file_name":"Computational_Toolbox_v1.2.zip","date_created":"2023-11-08T20:23:07Z","success":1,"file_id":"14503","relation":"main_file","content_type":"application/zip"},{"file_id":"14586","relation":"main_file","content_type":"text/plain","success":1,"date_created":"2023-11-21T08:20:23Z","file_size":1522,"creator":"dernst","file_name":"Readme.txt","access_level":"open_access","date_updated":"2023-11-21T08:20:23Z","checksum":"14db2addbfca61a085ba301ed6f2900b"}],"month":"11","_id":"14502","date_published":"2023-11-21T00:00:00Z","abstract":[{"text":"A precise quantitative description of the ultrastructural characteristics underlying biological mechanisms is often key to their understanding. This is particularly true for dynamic extra- and intracellular filamentous assemblies, playing a role in cell motility, cell integrity, cytokinesis, tissue formation and maintenance. For example, genetic manipulation or modulation of actin regulatory proteins frequently manifests in changes of the morphology, dynamics, and ultrastructural architecture of actin filament-rich cell peripheral structures, such as lamellipodia or filopodia. However, the observed ultrastructural effects often remain subtle and require sufficiently large datasets for appropriate quantitative analysis. The acquisition of such large datasets has been enabled by recent advances in high-throughput cryo-electron tomography (cryo-ET) methods. This also necessitates the development of complementary approaches to maximize the extraction of relevant biological information. We have developed a computational toolbox for the semi-automatic quantification of segmented and vectorized fila- mentous networks from pre-processed cryo-electron tomograms, facilitating the analysis and cross-comparison of multiple experimental conditions. GUI-based components simplify the processing of data and allow users to obtain a large number of ultrastructural parameters describing filamentous assemblies. We demonstrate the feasibility of this workflow by analyzing cryo-ET data of untreated and chemically perturbed branched actin filament networks and that of parallel actin filament arrays. In principle, the computational toolbox presented here is applicable for data analysis comprising any type of filaments in regular (i.e. parallel) or random arrangement. We show that it can ease the identification of key differences between experimental groups and facilitate the in-depth analysis of ultrastructural data in a time-efficient manner.","lang":"eng"}],"date_created":"2023-11-08T19:40:54Z","date_updated":"2023-11-21T08:36:02Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","keyword":["cryo-electron tomography","actin cytoskeleton","toolbox"],"doi":"10.15479/AT:ISTA:14502","ddc":["570"],"project":[{"grant_number":"P33367","name":"Structure and isoform diversity of the Arp2/3 complex","_id":"9B954C5C-BA93-11EA-9121-9846C619BF3A"}],"related_material":{"record":[{"relation":"used_for_analysis_in","id":"10290","status":"public"}]},"day":"21","year":"2023","has_accepted_license":"1","type":"software","author":[{"id":"38C393BE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8370-6161","last_name":"Dimchev","first_name":"Georgi A","full_name":"Dimchev, Georgi A"},{"last_name":"Amiri","full_name":"Amiri, Behnam","first_name":"Behnam"},{"orcid":"0000-0001-7149-769X","id":"404F5528-F248-11E8-B48F-1D18A9856A87","last_name":"Fäßler","full_name":"Fäßler, Florian","first_name":"Florian"},{"full_name":"Falcke, Martin","first_name":"Martin","last_name":"Falcke"},{"orcid":"0000-0003-4790-8078","id":"48AD8942-F248-11E8-B48F-1D18A9856A87","full_name":"Schur, Florian KM","first_name":"Florian KM","last_name":"Schur"}],"citation":{"apa":"Dimchev, G. A., Amiri, B., Fäßler, F., Falcke, M., & Schur, F. K. (2023). Computational toolbox for ultrastructural quantitative analysis of filament networks in cryo-ET data. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:14502","ama":"Dimchev GA, Amiri B, Fäßler F, Falcke M, Schur FK. Computational toolbox for ultrastructural quantitative analysis of filament networks in cryo-ET data. 2023. doi:10.15479/AT:ISTA:14502","short":"G.A. Dimchev, B. Amiri, F. Fäßler, M. Falcke, F.K. Schur, (2023).","mla":"Dimchev, Georgi A., et al. Computational Toolbox for Ultrastructural Quantitative Analysis of Filament Networks in Cryo-ET Data. Institute of Science and Technology Austria, 2023, doi:10.15479/AT:ISTA:14502.","ieee":"G. A. Dimchev, B. Amiri, F. Fäßler, M. Falcke, and F. K. Schur, “Computational toolbox for ultrastructural quantitative analysis of filament networks in cryo-ET data.” Institute of Science and Technology Austria, 2023.","ista":"Dimchev GA, Amiri B, Fäßler F, Falcke M, Schur FK. 2023. Computational toolbox for ultrastructural quantitative analysis of filament networks in cryo-ET data, Institute of Science and Technology Austria, 10.15479/AT:ISTA:14502.","chicago":"Dimchev, Georgi A, Behnam Amiri, Florian Fäßler, Martin Falcke, and Florian KM Schur. “Computational Toolbox for Ultrastructural Quantitative Analysis of Filament Networks in Cryo-ET Data.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/AT:ISTA:14502."},"title":"Computational toolbox for ultrastructural quantitative analysis of filament networks in cryo-ET data"},{"publication_identifier":{"issn":["2663 - 337X"]},"date_updated":"2025-07-14T09:09:52Z","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","has_accepted_license":"1","year":"2023","oa_version":"Published Version","file_date_updated":"2023-11-23T10:30:08Z","oa":1,"publication_status":"published","_id":"14506","abstract":[{"lang":"eng","text":"Payment channel networks are a promising approach to improve the scalability bottleneck\r\nof cryptocurrencies. Two design principles behind payment channel networks are\r\nefficiency and privacy. Payment channel networks improve efficiency by allowing users\r\nto transact in a peer-to-peer fashion along multi-hop routes in the network, avoiding\r\nthe lengthy process of consensus on the blockchain. Transacting over payment channel\r\nnetworks also improves privacy as these transactions are not broadcast to the blockchain.\r\nDespite the influx of recent protocols built on top of payment channel networks and\r\ntheir analysis, a common shortcoming of many of these protocols is that they typically\r\nfocus only on either improving efficiency or privacy, but not both. Another limitation\r\non the efficiency front is that the models used to model actions, costs and utilities of\r\nusers are limited or come with unrealistic assumptions.\r\nThis thesis aims to address some of the shortcomings of recent protocols and algorithms\r\non payment channel networks, particularly in their privacy and efficiency aspects. We\r\nfirst present a payment route discovery protocol based on hub labelling and private\r\ninformation retrieval that hides the route query and is also efficient. We then present\r\na rebalancing protocol that formulates the rebalancing problem as a linear program\r\nand solves the linear program using multiparty computation so as to hide the channel\r\nbalances. The rebalancing solution as output by our protocol is also globally optimal.\r\nWe go on to develop more realistic models of the action space, costs, and utilities of\r\nboth existing and new users that want to join the network. In each of these settings,\r\nwe also develop algorithms to optimise the utility of these users with good guarantees\r\non the approximation and competitive ratios."}],"date_published":"2023-11-10T00:00:00Z","file":[{"date_created":"2023-11-23T10:29:55Z","content_type":"application/x-zip-compressed","relation":"source_file","file_id":"14598","date_updated":"2023-11-23T10:29:55Z","access_level":"closed","checksum":"521c72818d720a52b377207b2ee87b6a","file_name":"thesis_yeo.zip","file_size":3037720,"creator":"cchlebak"},{"checksum":"0ed5d16899687aecf13d843c9878c9f2","date_updated":"2023-11-23T10:30:08Z","access_level":"open_access","file_name":"thesis_yeo.pdf","creator":"cchlebak","file_size":2717256,"date_created":"2023-11-23T10:30:08Z","success":1,"content_type":"application/pdf","file_id":"14599","relation":"main_file"}],"article_processing_charge":"No","doi":"10.15479/14506","ddc":["000"],"language":[{"iso":"eng"}],"related_material":{"record":[{"status":"public","relation":"part_of_dissertation","id":"9969"},{"status":"public","id":"14490","relation":"part_of_dissertation"},{"relation":"part_of_dissertation","id":"13238","status":"public"}]},"project":[{"_id":"2564DBCA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"665385","name":"International IST Doctoral Program"}],"type":"dissertation","author":[{"id":"2D82B818-F248-11E8-B48F-1D18A9856A87","orcid":"0009-0001-3676-4809","first_name":"Michelle X","full_name":"Yeo, Michelle X","last_name":"Yeo"}],"alternative_title":["ISTA Thesis"],"day":"10","title":"Advances in efficiency and privacy in payment channel network analysis","citation":{"ama":"Yeo MX. Advances in efficiency and privacy in payment channel network analysis. 2023. doi:10.15479/14506","apa":"Yeo, M. X. (2023). Advances in efficiency and privacy in payment channel network analysis. Institute of Science and Technology Austria. https://doi.org/10.15479/14506","short":"M.X. Yeo, Advances in Efficiency and Privacy in Payment Channel Network Analysis, Institute of Science and Technology Austria, 2023.","mla":"Yeo, Michelle X. Advances in Efficiency and Privacy in Payment Channel Network Analysis. Institute of Science and Technology Austria, 2023, doi:10.15479/14506.","chicago":"Yeo, Michelle X. “Advances in Efficiency and Privacy in Payment Channel Network Analysis.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/14506.","ieee":"M. X. Yeo, “Advances in efficiency and privacy in payment channel network analysis,” Institute of Science and Technology Austria, 2023.","ista":"Yeo MX. 2023. Advances in efficiency and privacy in payment channel network analysis. Institute of Science and Technology Austria."},"ec_funded":1,"status":"public","department":[{"_id":"GradSch"},{"_id":"KrPi"}],"degree_awarded":"PhD","publisher":"Institute of Science and Technology Austria","supervisor":[{"full_name":"Pietrzak, Krzysztof Z","first_name":"Krzysztof Z","last_name":"Pietrzak","orcid":"0000-0002-9139-1654","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87"}],"date_created":"2023-11-10T08:10:43Z","month":"11","page":"162"},{"related_material":{"record":[{"relation":"part_of_dissertation","id":"14591","status":"public"},{"relation":"part_of_dissertation","id":"9887","status":"public"},{"status":"public","id":"8139","relation":"part_of_dissertation"}]},"project":[{"call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","name":"International IST Doctoral Program","grant_number":"665385"}],"ddc":["570"],"doi":"10.15479/at:ista:14510","language":[{"iso":"eng"}],"keyword":["Clathrin-Mediated Endocytosis","vesicle scission","Dynamin-Related Protein 2","SH3P2","TPLATE complex","Total internal reflection fluorescence microscopy","Arabidopsis thaliana"],"title":"Mechanism of clathrin-coated vesicle formation during endocytosis in plants","ec_funded":1,"citation":{"mla":"Gnyliukh, Nataliia. Mechanism of Clathrin-Coated Vesicle Formation during Endocytosis in Plants. Institute of Science and Technology Austria, 2023, doi:10.15479/at:ista:14510.","chicago":"Gnyliukh, Nataliia. “Mechanism of Clathrin-Coated Vesicle Formation during Endocytosis in Plants.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/at:ista:14510.","ieee":"N. Gnyliukh, “Mechanism of clathrin-coated vesicle formation during endocytosis in plants,” Institute of Science and Technology Austria, 2023.","ista":"Gnyliukh N. 2023. Mechanism of clathrin-coated vesicle formation during endocytosis in plants. Institute of Science and Technology Austria.","ama":"Gnyliukh N. Mechanism of clathrin-coated vesicle formation during endocytosis in plants. 2023. doi:10.15479/at:ista:14510","apa":"Gnyliukh, N. (2023). Mechanism of clathrin-coated vesicle formation during endocytosis in plants. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:14510","short":"N. Gnyliukh, Mechanism of Clathrin-Coated Vesicle Formation during Endocytosis in Plants, Institute of Science and Technology Austria, 2023."},"alternative_title":["ISTA Thesis"],"type":"dissertation","author":[{"orcid":"0000-0002-2198-0509","id":"390C1120-F248-11E8-B48F-1D18A9856A87","full_name":"Gnyliukh, Nataliia","first_name":"Nataliia","last_name":"Gnyliukh"}],"day":"10","degree_awarded":"PhD","publisher":"Institute of Science and Technology Austria","status":"public","department":[{"_id":"GradSch"},{"_id":"JiFr"},{"_id":"MaLo"}],"page":"180","date_created":"2023-11-10T09:10:06Z","supervisor":[{"last_name":"Friml","full_name":"Friml, Jiří","first_name":"Jiří","orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87"},{"id":"462D4284-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7309-9724","last_name":"Loose","full_name":"Loose, Martin","first_name":"Martin"}],"month":"11","publication_identifier":{"issn":["2663-337X"],"isbn":["978-3-99078-037-4"]},"acknowledged_ssus":[{"_id":"EM-Fac"},{"_id":"Bio"},{"_id":"LifeSc"}],"date_updated":"2024-03-25T23:30:25Z","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","year":"2023","has_accepted_license":"1","oa_version":"Published Version","publication_status":"published","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"file_date_updated":"2023-11-23T13:10:55Z","article_processing_charge":"No","_id":"14510","date_published":"2023-11-10T00:00:00Z","file":[{"date_created":"2023-11-20T09:18:51Z","content_type":"application/vnd.openxmlformats-officedocument.wordprocessingml.document","file_id":"14567","relation":"source_file","date_updated":"2023-11-20T09:18:51Z","access_level":"closed","checksum":"3d5e680bfc61f98e308c434f45cc9bd6","file_name":"Thesis_Gnyliukh_final_08_11_23.docx","file_size":20824903,"creator":"ngnyliuk"},{"embargo":"2024-11-23","file_name":"Thesis_Gnyliukh_final_20_11_23.pdf","file_size":24871844,"creator":"ngnyliuk","date_updated":"2023-11-23T13:10:55Z","access_level":"closed","checksum":"bfc96d47fc4e7e857dd71656097214a4","content_type":"application/pdf","relation":"main_file","file_id":"14568","date_created":"2023-11-20T09:23:11Z","embargo_to":"open_access"}]},{"type":"journal_article","author":[{"full_name":"Mistakidis, S. I.","first_name":"S. I.","last_name":"Mistakidis"},{"orcid":"0000-0003-0393-5525","id":"37D278BC-F248-11E8-B48F-1D18A9856A87","last_name":"Volosniev","full_name":"Volosniev, Artem","first_name":"Artem"},{"first_name":"R. E.","full_name":"Barfknecht, R. E.","last_name":"Barfknecht"},{"last_name":"Fogarty","first_name":"T.","full_name":"Fogarty, T."},{"last_name":"Busch","full_name":"Busch, Th","first_name":"Th"},{"first_name":"A.","full_name":"Foerster, A.","last_name":"Foerster"},{"first_name":"P.","full_name":"Schmelcher, P.","last_name":"Schmelcher"},{"full_name":"Zinner, N. T.","first_name":"N. T.","last_name":"Zinner"}],"day":"29","title":"Few-body Bose gases in low dimensions - A laboratory for quantum dynamics","citation":{"mla":"Mistakidis, S. I., et al. “Few-Body Bose Gases in Low Dimensions - A Laboratory for Quantum Dynamics.” Physics Reports, vol. 1042, Elsevier, 2023, pp. 1–108, doi:10.1016/j.physrep.2023.10.004.","ieee":"S. I. Mistakidis et al., “Few-body Bose gases in low dimensions - A laboratory for quantum dynamics,” Physics Reports, vol. 1042. Elsevier, pp. 1–108, 2023.","ista":"Mistakidis SI, Volosniev A, Barfknecht RE, Fogarty T, Busch T, Foerster A, Schmelcher P, Zinner NT. 2023. Few-body Bose gases in low dimensions - A laboratory for quantum dynamics. Physics Reports. 1042, 1–108.","chicago":"Mistakidis, S. I., Artem Volosniev, R. E. Barfknecht, T. Fogarty, Th Busch, A. Foerster, P. Schmelcher, and N. T. Zinner. “Few-Body Bose Gases in Low Dimensions - A Laboratory for Quantum Dynamics.” Physics Reports. Elsevier, 2023. https://doi.org/10.1016/j.physrep.2023.10.004.","apa":"Mistakidis, S. I., Volosniev, A., Barfknecht, R. E., Fogarty, T., Busch, T., Foerster, A., … Zinner, N. T. (2023). Few-body Bose gases in low dimensions - A laboratory for quantum dynamics. Physics Reports. Elsevier. https://doi.org/10.1016/j.physrep.2023.10.004","ama":"Mistakidis SI, Volosniev A, Barfknecht RE, et al. Few-body Bose gases in low dimensions - A laboratory for quantum dynamics. Physics Reports. 2023;1042:1-108. doi:10.1016/j.physrep.2023.10.004","short":"S.I. Mistakidis, A. Volosniev, R.E. Barfknecht, T. Fogarty, T. Busch, A. Foerster, P. Schmelcher, N.T. Zinner, Physics Reports 1042 (2023) 1–108."},"ec_funded":1,"doi":"10.1016/j.physrep.2023.10.004","language":[{"iso":"eng"}],"project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships"}],"acknowledgement":"This review could not have been written without the many fruitful discussions and great collaborations with colleagues throughout the years, there are too many to mention. Here we acknowledge conversations regarding the context of the review with Joachim Brand, Fabian Brauneis, Adolfo del Campo, Alberto Cappellaro, Panagiotis Giannakeas, Tommaso Macrí, Oleksandr Marchukov, Lukas Rammelmüller and Manuel Valiente. S. I. M. acknowledges support from the NSF through a grant for ITAMP at Harvard University. T.F. acknowledges support from JSPS KAKENHI Grant Number JP23K03290 and T.F. and Th.B. acknowledge support from the Okinawa Institute for Science and Technology Graduate University, and JST Grant Number JPMJPF2221. A.F. and R. E. B. acknowledge support from CNPq (Conselho Nacional de Desenvolvimento Científico e Tecnológico) - Edital Universal 406563/2021-7. A. G. V. acknowledges support by European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411. P. S. is supported by the Cluster of Excellence ‘Advanced Imaging of Matter’ of the Deutsche Forschungsgemeinschaft (DFG) - EXC2056 - project ID 390715994. N. T. Z. is partially supported by the Independent Research Fund Denmark .","date_created":"2023-11-12T23:00:54Z","month":"11","page":"1-108","status":"public","intvolume":" 1042","publication":"Physics Reports","department":[{"_id":"MiLe"}],"quality_controlled":"1","publisher":"Elsevier","year":"2023","oa_version":"Preprint","article_type":"original","publication_identifier":{"issn":["0370-1573"]},"scopus_import":"1","external_id":{"arxiv":["2202.11071"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2023-11-13T08:01:57Z","_id":"14513","date_published":"2023-11-29T00:00:00Z","abstract":[{"text":"Cold atomic gases have become a paradigmatic system for exploring fundamental physics, which at the same time allows for applications in quantum technologies. The accelerating developments in the field have led to a highly advanced set of engineering techniques that, for example, can tune interactions, shape the external geometry, select among a large set of atomic species with different properties, or control the number of atoms. In particular, it is possible to operate in lower dimensions and drive atomic systems into the strongly correlated regime. In this review, we discuss recent advances in few-body cold atom systems confined in low dimensions from a theoretical viewpoint. We mainly focus on bosonic systems in one dimension and provide an introduction to the static properties before we review the state-of-the-art research into quantum dynamical processes stimulated by the presence of correlations. Besides discussing the fundamental physical phenomena arising in these systems, we also provide an overview of the calculational and numerical tools and methods that are commonly used, thus delivering a balanced and comprehensive overview of the field. We conclude by giving an outlook on possible future directions that are interesting to explore in these correlated systems.","lang":"eng"}],"article_processing_charge":"No","arxiv":1,"volume":1042,"oa":1,"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2202.11071","open_access":"1"}],"publication_status":"published"},{"article_type":"original","oa_version":"Published Version","year":"2023","has_accepted_license":"1","date_updated":"2023-11-13T09:21:30Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","publication_identifier":{"issn":["0031-9007"],"eissn":["1079-7114"]},"issue":"16","article_processing_charge":"Yes (in subscription journal)","file":[{"date_updated":"2023-11-13T09:12:58Z","access_level":"open_access","checksum":"1a419e25b762aadffbcc8eb2e609bd97","file_name":"2023_PhysRevLetters_Binysh.pdf","file_size":724098,"creator":"dernst","success":1,"date_created":"2023-11-13T09:12:58Z","content_type":"application/pdf","relation":"main_file","file_id":"14524"}],"article_number":"168201","date_published":"2023-10-20T00:00:00Z","_id":"14514","abstract":[{"lang":"eng","text":"The elastic Leidenfrost effect occurs when a vaporizable soft solid is lowered onto a hot surface. Evaporative flow couples to elastic deformation, giving spontaneous bouncing or steady-state floating. The effect embodies an unexplored interplay between thermodynamics, elasticity, and lubrication: despite being observed, its basic theoretical description remains a challenge. Here, we provide a theory of elastic Leidenfrost floating. As weight increases, a rigid solid sits closer to the hot surface. By contrast, we discover an elasticity-dominated regime where the heavier the solid, the higher it floats. This geometry-governed behavior is reminiscent of the dynamics of large liquid Leidenfrost drops. We show that this elastic regime is characterized by Hertzian behavior of the solid’s underbelly and derive how the float height scales with materials parameters. Introducing a dimensionless elastic Leidenfrost number, we capture the crossover between rigid and Hertzian behavior. Our results provide theoretical underpinning for recent experiments, and point to the design of novel soft machines."}],"publication_status":"published","oa":1,"file_date_updated":"2023-11-13T09:12:58Z","volume":131,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"citation":{"mla":"Binysh, Jack, et al. “Modeling Leidenfrost Levitation of Soft Elastic Solids.” Physical Review Letters, vol. 131, no. 16, 168201, American Physical Society, 2023, doi:10.1103/PhysRevLett.131.168201.","ieee":"J. Binysh et al., “Modeling Leidenfrost levitation of soft elastic solids,” Physical Review Letters, vol. 131, no. 16. American Physical Society, 2023.","ista":"Binysh J, Chakraborty I, Chubynsky MV, Diaz Melian VL, Waitukaitis SR, Sprittles JE, Souslov A. 2023. Modeling Leidenfrost levitation of soft elastic solids. Physical Review Letters. 131(16), 168201.","chicago":"Binysh, Jack, Indrajit Chakraborty, Mykyta V. Chubynsky, Vicente L Diaz Melian, Scott R Waitukaitis, James E. Sprittles, and Anton Souslov. “Modeling Leidenfrost Levitation of Soft Elastic Solids.” Physical Review Letters. American Physical Society, 2023. https://doi.org/10.1103/PhysRevLett.131.168201.","apa":"Binysh, J., Chakraborty, I., Chubynsky, M. V., Diaz Melian, V. L., Waitukaitis, S. R., Sprittles, J. E., & Souslov, A. (2023). Modeling Leidenfrost levitation of soft elastic solids. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.131.168201","ama":"Binysh J, Chakraborty I, Chubynsky MV, et al. Modeling Leidenfrost levitation of soft elastic solids. Physical Review Letters. 2023;131(16). doi:10.1103/PhysRevLett.131.168201","short":"J. Binysh, I. Chakraborty, M.V. Chubynsky, V.L. Diaz Melian, S.R. Waitukaitis, J.E. Sprittles, A. Souslov, Physical Review Letters 131 (2023)."},"title":"Modeling Leidenfrost levitation of soft elastic solids","day":"20","type":"journal_article","author":[{"last_name":"Binysh","full_name":"Binysh, Jack","first_name":"Jack"},{"last_name":"Chakraborty","full_name":"Chakraborty, Indrajit","first_name":"Indrajit"},{"last_name":"Chubynsky","first_name":"Mykyta V.","full_name":"Chubynsky, Mykyta V."},{"id":"b6798902-eea0-11ea-9cbc-a8e14286c631","full_name":"Diaz Melian, Vicente L","first_name":"Vicente L","last_name":"Diaz Melian"},{"last_name":"Waitukaitis","full_name":"Waitukaitis, Scott R","first_name":"Scott R","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2299-3176"},{"last_name":"Sprittles","full_name":"Sprittles, James E.","first_name":"James E."},{"last_name":"Souslov","first_name":"Anton","full_name":"Souslov, Anton"}],"acknowledgement":"We are grateful to Dominic Vella, Jens Eggers, John Kolinski, Joshua Dijksman, and Daniel Bonn for insightful discussions. J. B. and A. S. acknowledge the support of the Engineering and Physical Sciences Research Council (EPSRC) through New Investigator Award No. EP/\r\nT000961/1. A. S. acknowledges the support of Royal Society under Grant No. RGS/R2/202135. J. E. S. acknowledges EPSRC Grants No. EP/N016602/1, EP/S022848/1, EP/S029966/1, and EP/P031684/1.","related_material":{"record":[{"status":"public","id":"14523","relation":"research_data"}]},"language":[{"iso":"eng"}],"doi":"10.1103/PhysRevLett.131.168201","ddc":["530"],"month":"10","date_created":"2023-11-12T23:00:55Z","publisher":"American Physical Society","department":[{"_id":"ScWa"}],"quality_controlled":"1","publication":"Physical Review Letters","status":"public","intvolume":" 131"},{"arxiv":1,"article_processing_charge":"Yes","issue":"4","file":[{"date_updated":"2023-11-13T09:00:19Z","access_level":"open_access","checksum":"32574aeebcca7347a4152c611b66b3d5","file_name":"2023_PhysReviewX_Reinhardt.pdf","creator":"dernst","file_size":1595223,"success":1,"date_created":"2023-11-13T09:00:19Z","content_type":"application/pdf","file_id":"14522","relation":"main_file"}],"article_number":"041017","date_published":"2023-10-26T00:00:00Z","_id":"14515","abstract":[{"text":"Most natural and engineered information-processing systems transmit information via signals that vary in time. Computing the information transmission rate or the information encoded in the temporal characteristics of these signals requires the mutual information between the input and output signals as a function of time, i.e., between the input and output trajectories. Yet, this is notoriously difficult because of the high-dimensional nature of the trajectory space, and all existing techniques require approximations. We present an exact Monte Carlo technique called path weight sampling (PWS) that, for the first time, makes it possible to compute the mutual information between input and output trajectories for any stochastic system that is described by a master equation. The principal idea is to use the master equation to evaluate the exact conditional probability of an individual output trajectory for a given input trajectory and average this via Monte Carlo sampling in trajectory space to obtain the mutual information. We present three variants of PWS, which all generate the trajectories using the standard stochastic simulation algorithm. While direct PWS is a brute-force method, Rosenbluth-Rosenbluth PWS exploits the analogy between signal trajectory sampling and polymer sampling, and thermodynamic integration PWS is based on a reversible work calculation in trajectory space. PWS also makes it possible to compute the mutual information between input and output trajectories for systems with hidden internal states as well as systems with feedback from output to input. Applying PWS to the bacterial chemotaxis system, consisting of 182 coupled chemical reactions, demonstrates not only that the scheme is highly efficient but also that the number of receptor clusters is much smaller than hitherto believed, while their size is much larger.","lang":"eng"}],"publication_status":"published","oa":1,"file_date_updated":"2023-11-13T09:00:19Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"volume":13,"article_type":"original","year":"2023","has_accepted_license":"1","oa_version":"Published Version","scopus_import":"1","external_id":{"arxiv":["2203.03461"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2023-11-13T09:03:30Z","publication_identifier":{"eissn":["2160-3308"]},"month":"10","date_created":"2023-11-12T23:00:55Z","publisher":"American Physical Society","publication":"Physical Review X","quality_controlled":"1","department":[{"_id":"GaTk"}],"status":"public","intvolume":" 13","citation":{"apa":"Reinhardt, M., Tkačik, G., & Ten Wolde, P. R. (2023). Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories. Physical Review X. American Physical Society. https://doi.org/10.1103/PhysRevX.13.041017","ama":"Reinhardt M, Tkačik G, Ten Wolde PR. Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories. Physical Review X. 2023;13(4). doi:10.1103/PhysRevX.13.041017","short":"M. Reinhardt, G. Tkačik, P.R. Ten Wolde, Physical Review X 13 (2023).","mla":"Reinhardt, Manuel, et al. “Path Weight Sampling: Exact Monte Carlo Computation of the Mutual Information between Stochastic Trajectories.” Physical Review X, vol. 13, no. 4, 041017, American Physical Society, 2023, doi:10.1103/PhysRevX.13.041017.","ieee":"M. Reinhardt, G. Tkačik, and P. R. Ten Wolde, “Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories,” Physical Review X, vol. 13, no. 4. American Physical Society, 2023.","ista":"Reinhardt M, Tkačik G, Ten Wolde PR. 2023. Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories. Physical Review X. 13(4), 041017.","chicago":"Reinhardt, Manuel, Gašper Tkačik, and Pieter Rein Ten Wolde. “Path Weight Sampling: Exact Monte Carlo Computation of the Mutual Information between Stochastic Trajectories.” Physical Review X. American Physical Society, 2023. https://doi.org/10.1103/PhysRevX.13.041017."},"title":"Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories","day":"26","type":"journal_article","author":[{"last_name":"Reinhardt","first_name":"Manuel","full_name":"Reinhardt, Manuel"},{"orcid":"0000-0002-6699-1455","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","last_name":"Tkačik","first_name":"Gašper","full_name":"Tkačik, Gašper"},{"first_name":"Pieter Rein","full_name":"Ten Wolde, Pieter Rein","last_name":"Ten Wolde"}],"acknowledgement":"We thank Bela Mulder, Tom Shimizu, Fotios Avgidis, Peter Bolhuis, and Daan Frenkel for useful discussions and a careful reading of the manuscript, and we thank Age Tjalma for support with obtaining the Gaussian approximation of the chemotaxis system. This work is part of the Dutch Research Council (NWO) and was performed at the research institute AMOLF. This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (Grant Agreement No. 885065) and was\r\nfinancially supported by NWO through the “Building a Synthetic Cell (BaSyC)” Gravitation Grant (024.003.019).","language":[{"iso":"eng"}],"ddc":["530"],"doi":"10.1103/PhysRevX.13.041017"},{"title":"STROBE: Streaming Threshold Random Beacons","conference":{"location":"Princeton, NJ, United States","start_date":"2023-10-23","end_date":"2023-10-25","name":"AFT: Conference on Advances in Financial Technologies"},"citation":{"short":"D. Beaver, M. Kelkar, K. Lewi, V. Nikolaenko, A. Sonnino, K. Chalkias, E. Kokoris Kogias, L.D. Naurois, A. Roy, in:, 5th Conference on Advances in Financial Technologies, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023.","apa":"Beaver, D., Kelkar, M., Lewi, K., Nikolaenko, V., Sonnino, A., Chalkias, K., … Roy, A. (2023). STROBE: Streaming Threshold Random Beacons. In 5th Conference on Advances in Financial Technologies (Vol. 282). Princeton, NJ, United States: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.AFT.2023.7","ama":"Beaver D, Kelkar M, Lewi K, et al. STROBE: Streaming Threshold Random Beacons. In: 5th Conference on Advances in Financial Technologies. Vol 282. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:10.4230/LIPIcs.AFT.2023.7","ieee":"D. Beaver et al., “STROBE: Streaming Threshold Random Beacons,” in 5th Conference on Advances in Financial Technologies, Princeton, NJ, United States, 2023, vol. 282.","ista":"Beaver D, Kelkar M, Lewi K, Nikolaenko V, Sonnino A, Chalkias K, Kokoris Kogias E, Naurois LD, Roy A. 2023. STROBE: Streaming Threshold Random Beacons. 5th Conference on Advances in Financial Technologies. AFT: Conference on Advances in Financial Technologies, LIPIcs, vol. 282, 7.","chicago":"Beaver, Donald, Mahimna Kelkar, Kevin Lewi, Valeria Nikolaenko, Alberto Sonnino, Konstantinos Chalkias, Eleftherios Kokoris Kogias, Ladi De Naurois, and Arnab Roy. “STROBE: Streaming Threshold Random Beacons.” In 5th Conference on Advances in Financial Technologies, Vol. 282. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. https://doi.org/10.4230/LIPIcs.AFT.2023.7.","mla":"Beaver, Donald, et al. “STROBE: Streaming Threshold Random Beacons.” 5th Conference on Advances in Financial Technologies, vol. 282, 7, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:10.4230/LIPIcs.AFT.2023.7."},"type":"conference","author":[{"last_name":"Beaver","first_name":"Donald","full_name":"Beaver, Donald"},{"last_name":"Kelkar","first_name":"Mahimna","full_name":"Kelkar, Mahimna"},{"full_name":"Lewi, Kevin","first_name":"Kevin","last_name":"Lewi"},{"full_name":"Nikolaenko, Valeria","first_name":"Valeria","last_name":"Nikolaenko"},{"full_name":"Sonnino, Alberto","first_name":"Alberto","last_name":"Sonnino"},{"full_name":"Chalkias, Konstantinos","first_name":"Konstantinos","last_name":"Chalkias"},{"id":"f5983044-d7ef-11ea-ac6d-fd1430a26d30","first_name":"Eleftherios","full_name":"Kokoris Kogias, Eleftherios","last_name":"Kokoris Kogias"},{"last_name":"Naurois","first_name":"Ladi De","full_name":"Naurois, Ladi De"},{"last_name":"Roy","full_name":"Roy, Arnab","first_name":"Arnab"}],"alternative_title":["LIPIcs"],"day":"01","acknowledgement":"Work done when all the authors were at Novi Research, Meta.","ddc":["000"],"doi":"10.4230/LIPIcs.AFT.2023.7","language":[{"iso":"eng"}],"date_created":"2023-11-12T23:00:55Z","month":"10","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","intvolume":" 282","status":"public","publication":"5th Conference on Advances in Financial Technologies","quality_controlled":"1","department":[{"_id":"ElKo"}],"has_accepted_license":"1","oa_version":"Published Version","year":"2023","publication_identifier":{"issn":["1868-8969"],"isbn":["9783959773034"]},"scopus_import":"1","date_updated":"2023-11-13T08:52:01Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"Yes","abstract":[{"text":"We revisit decentralized random beacons with a focus on practical distributed applications. Decentralized random beacons (Beaver and So, Eurocrypt'93) provide the functionality for n parties to generate an unpredictable sequence of bits in a way that cannot be biased, which is useful for any decentralized protocol requiring trusted randomness. Existing beacon constructions are highly inefficient in practical settings where protocol parties need to rejoin after crashes or disconnections, and more significantly where smart contracts may rely on arbitrary index points in high-volume streams. For this, we introduce a new notion of history-generating decentralized random beacons (HGDRBs). Roughly, the history-generation property of HGDRBs allows for previous beacon outputs to be efficiently generated knowing only the current value and the public key. At application layers, history-generation supports registering a sparser set of on-chain values if desired, so that apps like lotteries can utilize on-chain values without incurring high-frequency costs, enjoying all the benefits of DRBs implemented off-chain or with decoupled, special-purpose chains. Unlike rollups, HG is tailored specifically to recovering and verifying pseudorandom bit sequences and thus enjoys unique optimizations investigated in this work. We introduce STROBE: an efficient HGDRB construction which generalizes the original squaring-based RSA approach of Beaver and So. STROBE enjoys several useful properties that make it suited for practical applications that use beacons: 1) history-generating: it can regenerate and verify high-throughput beacon streams, supporting sparse (thus cost-effective) ledger entries; 2) concisely self-verifying: NIZK-free, with state and validation employing a single ring element; 3) eco-friendly: stake-based rather than work based; 4) unbounded: refresh-free, addressing limitations of Beaver and So; 5) delay-free: results are immediately available. 6) storage-efficient: the last beacon suffices to derive all past outputs, thus O(1) storage requirements for nodes serving the whole history.","lang":"eng"}],"_id":"14516","date_published":"2023-10-01T00:00:00Z","file":[{"date_updated":"2023-11-13T08:44:34Z","access_level":"open_access","checksum":"c1f98831cb5149d6c030c41999e6e960","file_name":"2023_LIPIcs_Beaver.pdf","creator":"dernst","file_size":793495,"success":1,"date_created":"2023-11-13T08:44:34Z","content_type":"application/pdf","relation":"main_file","file_id":"14521"}],"article_number":"7","main_file_link":[{"open_access":"1","url":"https://eprint.iacr.org/2021/1643"}],"oa":1,"publication_status":"published","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"volume":282,"file_date_updated":"2023-11-13T08:44:34Z"},{"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2206.14104"}],"oa":1,"publication_status":"published","volume":20,"article_processing_charge":"No","issue":"4","arxiv":1,"date_published":"2023-10-20T00:00:00Z","_id":"14517","abstract":[{"lang":"eng","text":"State-of-the-art transmon qubits rely on large capacitors, which systematically improve their coherence due to reduced surface-loss participation. However, this approach increases both the footprint and the parasitic cross-coupling and is ultimately limited by radiation losses—a potential roadblock for scaling up quantum processors to millions of qubits. In this work we present transmon qubits with sizes as low as 36 × 39 µm2 with 100-nm-wide vacuum-gap capacitors that are micromachined from commercial silicon-on-insulator wafers and shadow evaporated with aluminum. We achieve a vacuum participation ratio up to 99.6% in an in-plane design that is compatible with standard coplanar circuits. Qubit relaxationtime measurements for small gaps with high zero-point electric field variance of up to 22 V/m reveal a double exponential decay indicating comparably strong qubit interaction with long-lived two-level systems. The exceptionally high selectivity of up to 20 dB to the superconductor-vacuum interface allows us to precisely back out the sub-single-photon dielectric loss tangent of aluminum oxide previously exposed to ambient conditions. In terms of future scaling potential, we achieve a ratio of qubit quality factor to a footprint area equal to 20 µm−2, which is comparable with the highest T1 devices relying on larger geometries, a value that could improve substantially for lower surface-loss superconductors. "}],"article_number":"044054","publication_identifier":{"eissn":["2331-7019"]},"acknowledged_ssus":[{"_id":"NanoFab"}],"external_id":{"arxiv":["2206.14104"]},"scopus_import":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2024-08-07T07:11:55Z","oa_version":"Preprint","year":"2023","article_type":"original","publisher":"American Physical Society","status":"public","intvolume":" 20","publication":"Physical Review Applied","department":[{"_id":"JoFi"}],"quality_controlled":"1","date_created":"2023-11-12T23:00:55Z","month":"10","related_material":{"record":[{"status":"public","id":"14520","relation":"research_data"}]},"project":[{"grant_number":"F07105","name":"Integrating superconducting quantum circuits","_id":"26927A52-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"},{"name":"A Fiber Optic Transceiver for Superconducting Qubits","grant_number":"758053","call_identifier":"H2020","_id":"26336814-B435-11E9-9278-68D0E5697425"},{"_id":"eb9b30ac-77a9-11ec-83b8-871f581d53d2","name":"Protected states of quantum matter"},{"grant_number":"707438","name":"Microwave-to-Optical Quantum Link: Quantum Teleportation and Quantum Illumination with cavity Optomechanics SUPEREOM","call_identifier":"H2020","_id":"258047B6-B435-11E9-9278-68D0E5697425"},{"_id":"bdb7cfc1-d553-11ed-ba76-d2eaab167738","name":"Open Superconducting Quantum Computers (OpenSuperQPlus)","grant_number":"101080139"}],"acknowledgement":"This work was supported by the Austrian Science Fund (FWF) through BeyondC (F7105), the European Research Council under Grant Agreement No. 758053 (ERC StG QUNNECT) and a NOMIS foundation research grant. M.Z. was the recipient of a SAIA scholarship, E.R. of\r\na DOC fellowship of the Austrian Academy of Sciences, and M.P. of a Pöttinger scholarship at IST Austria. S.B. acknowledges support from Marie Skłodowska Curie Program No. 707438 (MSC-IF SUPEREOM). J.M.F. acknowledges support from the Horizon Europe Program HORIZON-CL4-2022-QUANTUM-01-SGA via Project No. 101113946 OpenSuperQPlus100 and the ISTA Nanofabrication Facility.","doi":"10.1103/PhysRevApplied.20.044054","language":[{"iso":"eng"}],"title":"Compact vacuum-gap transmon qubits: Selective and sensitive probes for superconductor surface losses","citation":{"ieee":"M. Zemlicka et al., “Compact vacuum-gap transmon qubits: Selective and sensitive probes for superconductor surface losses,” Physical Review Applied, vol. 20, no. 4. American Physical Society, 2023.","ista":"Zemlicka M, Redchenko E, Peruzzo M, Hassani F, Trioni A, Barzanjeh S, Fink JM. 2023. Compact vacuum-gap transmon qubits: Selective and sensitive probes for superconductor surface losses. Physical Review Applied. 20(4), 044054.","chicago":"Zemlicka, Martin, Elena Redchenko, Matilda Peruzzo, Farid Hassani, Andrea Trioni, Shabir Barzanjeh, and Johannes M Fink. “Compact Vacuum-Gap Transmon Qubits: Selective and Sensitive Probes for Superconductor Surface Losses.” Physical Review Applied. American Physical Society, 2023. https://doi.org/10.1103/PhysRevApplied.20.044054.","mla":"Zemlicka, Martin, et al. “Compact Vacuum-Gap Transmon Qubits: Selective and Sensitive Probes for Superconductor Surface Losses.” Physical Review Applied, vol. 20, no. 4, 044054, American Physical Society, 2023, doi:10.1103/PhysRevApplied.20.044054.","short":"M. Zemlicka, E. Redchenko, M. Peruzzo, F. Hassani, A. Trioni, S. Barzanjeh, J.M. Fink, Physical Review Applied 20 (2023).","apa":"Zemlicka, M., Redchenko, E., Peruzzo, M., Hassani, F., Trioni, A., Barzanjeh, S., & Fink, J. M. (2023). Compact vacuum-gap transmon qubits: Selective and sensitive probes for superconductor surface losses. Physical Review Applied. American Physical Society. https://doi.org/10.1103/PhysRevApplied.20.044054","ama":"Zemlicka M, Redchenko E, Peruzzo M, et al. Compact vacuum-gap transmon qubits: Selective and sensitive probes for superconductor surface losses. Physical Review Applied. 2023;20(4). doi:10.1103/PhysRevApplied.20.044054"},"ec_funded":1,"type":"journal_article","author":[{"id":"2DCF8DE6-F248-11E8-B48F-1D18A9856A87","first_name":"Martin","full_name":"Zemlicka, Martin","last_name":"Zemlicka"},{"last_name":"Redchenko","full_name":"Redchenko, Elena","first_name":"Elena","id":"2C21D6E8-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0002-3415-4628","id":"3F920B30-F248-11E8-B48F-1D18A9856A87","full_name":"Peruzzo, Matilda","first_name":"Matilda","last_name":"Peruzzo"},{"orcid":"0000-0001-6937-5773","id":"2AED110C-F248-11E8-B48F-1D18A9856A87","last_name":"Hassani","full_name":"Hassani, Farid","first_name":"Farid"},{"id":"42F71B44-F248-11E8-B48F-1D18A9856A87","last_name":"Trioni","first_name":"Andrea","full_name":"Trioni, Andrea"},{"first_name":"Shabir","full_name":"Barzanjeh, Shabir","last_name":"Barzanjeh","id":"2D25E1F6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-0415-1423"},{"orcid":"0000-0001-8112-028X","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","last_name":"Fink","full_name":"Fink, Johannes M","first_name":"Johannes M"}],"day":"20"},{"oa_version":"Published Version","has_accepted_license":"1","year":"2023","publication_identifier":{"issn":["0922-6389"],"isbn":["9781643684369"]},"scopus_import":"1","external_id":{"arxiv":["2307.15218"]},"date_updated":"2025-07-14T09:09:57Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14518","date_published":"2023-09-28T00:00:00Z","abstract":[{"text":"We consider bidding games, a class of two-player zero-sum graph games. The game proceeds as follows. Both players have bounded budgets. A token is placed on a vertex of a graph, in each turn the players simultaneously submit bids, and the higher bidder moves the token, where we break bidding ties in favor of Player 1. Player 1 wins the game iff the token visits a designated target vertex. We consider, for the first time, poorman discrete-bidding in which the granularity of the bids is restricted and the higher bid is paid to the bank. Previous work either did not impose granularity restrictions or considered Richman bidding (bids are paid to the opponent). While the latter mechanisms are technically more accessible, the former is more appealing from a practical standpoint. Our study focuses on threshold budgets, which is the necessary and sufficient initial budget required for Player 1 to ensure winning against a given Player 2 budget. We first show existence of thresholds. In DAGs, we show that threshold budgets can be approximated with error bounds by thresholds under continuous-bidding and that they exhibit a periodic behavior. We identify closed-form solutions in special cases. We implement and experiment with an algorithm to find threshold budgets.","lang":"eng"}],"file":[{"checksum":"1390ca38480fa4cf286b0f1a42e8c12f","date_updated":"2023-11-13T10:16:10Z","access_level":"open_access","file_name":"2023_FAIA_Avni.pdf","creator":"dernst","file_size":501011,"date_created":"2023-11-13T10:16:10Z","success":1,"content_type":"application/pdf","file_id":"14529","relation":"main_file"}],"article_processing_charge":"No","arxiv":1,"tmp":{"short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)"},"volume":372,"file_date_updated":"2023-11-13T10:16:10Z","oa":1,"publication_status":"published","type":"conference","author":[{"last_name":"Avni","full_name":"Avni, Guy","first_name":"Guy","orcid":"0000-0001-5588-8287","id":"463C8BC2-F248-11E8-B48F-1D18A9856A87"},{"id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1","orcid":"0000-0002-1712-2165","first_name":"Tobias","full_name":"Meggendorfer, Tobias","last_name":"Meggendorfer"},{"full_name":"Sadhukhan, Suman","first_name":"Suman","last_name":"Sadhukhan"},{"first_name":"Josef","full_name":"Tkadlec, Josef","last_name":"Tkadlec","orcid":"0000-0002-1097-9684","id":"3F24CCC8-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Dorde","full_name":"Zikelic, Dorde","last_name":"Zikelic","id":"294AA7A6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4681-1699"}],"day":"28","title":"Reachability poorman discrete-bidding games","conference":{"end_date":"2023-10-04","start_date":"2023-09-30","name":"ECAI: European Conference on Artificial Intelligence","location":"Krakow, Poland"},"citation":{"apa":"Avni, G., Meggendorfer, T., Sadhukhan, S., Tkadlec, J., & Zikelic, D. (2023). Reachability poorman discrete-bidding games. In Frontiers in Artificial Intelligence and Applications (Vol. 372, pp. 141–148). Krakow, Poland: IOS Press. https://doi.org/10.3233/FAIA230264","ama":"Avni G, Meggendorfer T, Sadhukhan S, Tkadlec J, Zikelic D. Reachability poorman discrete-bidding games. In: Frontiers in Artificial Intelligence and Applications. Vol 372. IOS Press; 2023:141-148. doi:10.3233/FAIA230264","short":"G. Avni, T. Meggendorfer, S. Sadhukhan, J. Tkadlec, D. Zikelic, in:, Frontiers in Artificial Intelligence and Applications, IOS Press, 2023, pp. 141–148.","mla":"Avni, Guy, et al. “Reachability Poorman Discrete-Bidding Games.” Frontiers in Artificial Intelligence and Applications, vol. 372, IOS Press, 2023, pp. 141–48, doi:10.3233/FAIA230264.","ieee":"G. Avni, T. Meggendorfer, S. Sadhukhan, J. Tkadlec, and D. Zikelic, “Reachability poorman discrete-bidding games,” in Frontiers in Artificial Intelligence and Applications, Krakow, Poland, 2023, vol. 372, pp. 141–148.","ista":"Avni G, Meggendorfer T, Sadhukhan S, Tkadlec J, Zikelic D. 2023. Reachability poorman discrete-bidding games. Frontiers in Artificial Intelligence and Applications. ECAI: European Conference on Artificial Intelligence vol. 372, 141–148.","chicago":"Avni, Guy, Tobias Meggendorfer, Suman Sadhukhan, Josef Tkadlec, and Dorde Zikelic. “Reachability Poorman Discrete-Bidding Games.” In Frontiers in Artificial Intelligence and Applications, 372:141–48. IOS Press, 2023. https://doi.org/10.3233/FAIA230264."},"ec_funded":1,"ddc":["000"],"doi":"10.3233/FAIA230264","language":[{"iso":"eng"}],"project":[{"call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","name":"International IST Doctoral Program","grant_number":"665385"},{"_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","call_identifier":"H2020","name":"Formal Methods for Stochastic Models: Algorithms and Applications","grant_number":"863818"}],"acknowledgement":"This research was supported in part by ISF grant no. 1679/21, ERC CoG 863818 (FoRM-SMArt) and the European Union’s Horizon 2020 research and innovation programme under the Marie SkłodowskaCurie Grant Agreement No. 665385.","date_created":"2023-11-12T23:00:56Z","month":"09","page":"141-148","status":"public","intvolume":" 372","publication":"Frontiers in Artificial Intelligence and Applications","quality_controlled":"1","department":[{"_id":"ToHe"},{"_id":"KrCh"}],"publisher":"IOS Press"},{"title":"SouslovLab/PRL2023-ModellingLeidenfrostLevitationofSoftElasticSolids: v1.0.1","citation":{"ama":"Binysh J, Chakraborty I, Chubynsky M, et al. SouslovLab/PRL2023-ModellingLeidenfrostLevitationofSoftElasticSolids: v1.0.1. 2023. doi:10.5281/ZENODO.8329143","apa":"Binysh, J., Chakraborty, I., Chubynsky, M., Diaz Melian, V. L., Waitukaitis, S. R., Sprittles, J., & Souslov, A. (2023). SouslovLab/PRL2023-ModellingLeidenfrostLevitationofSoftElasticSolids: v1.0.1. Zenodo. https://doi.org/10.5281/ZENODO.8329143","short":"J. Binysh, I. Chakraborty, M. Chubynsky, V.L. Diaz Melian, S.R. Waitukaitis, J. Sprittles, A. Souslov, (2023).","mla":"Binysh, Jack, et al. SouslovLab/PRL2023-ModellingLeidenfrostLevitationofSoftElasticSolids: V1.0.1. Zenodo, 2023, doi:10.5281/ZENODO.8329143.","chicago":"Binysh, Jack, Indrajit Chakraborty, Mykyta Chubynsky, Vicente L Diaz Melian, Scott R Waitukaitis, James Sprittles, and Anton Souslov. “SouslovLab/PRL2023-ModellingLeidenfrostLevitationofSoftElasticSolids: V1.0.1.” Zenodo, 2023. https://doi.org/10.5281/ZENODO.8329143.","ieee":"J. Binysh et al., “SouslovLab/PRL2023-ModellingLeidenfrostLevitationofSoftElasticSolids: v1.0.1.” Zenodo, 2023.","ista":"Binysh J, Chakraborty I, Chubynsky M, Diaz Melian VL, Waitukaitis SR, Sprittles J, Souslov A. 2023. SouslovLab/PRL2023-ModellingLeidenfrostLevitationofSoftElasticSolids: v1.0.1, Zenodo, 10.5281/ZENODO.8329143."},"type":"research_data_reference","author":[{"last_name":"Binysh","full_name":"Binysh, Jack","first_name":"Jack"},{"last_name":"Chakraborty","first_name":"Indrajit","full_name":"Chakraborty, Indrajit"},{"last_name":"Chubynsky","full_name":"Chubynsky, Mykyta","first_name":"Mykyta"},{"id":"b6798902-eea0-11ea-9cbc-a8e14286c631","last_name":"Diaz Melian","full_name":"Diaz Melian, Vicente L","first_name":"Vicente L"},{"last_name":"Waitukaitis","first_name":"Scott R","full_name":"Waitukaitis, Scott R","orcid":"0000-0002-2299-3176","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Sprittles","full_name":"Sprittles, James","first_name":"James"},{"first_name":"Anton","full_name":"Souslov, Anton","last_name":"Souslov"}],"oa_version":"Published Version","year":"2023","day":"08","related_material":{"record":[{"id":"14514","relation":"used_in_publication","status":"public"}]},"doi":"10.5281/ZENODO.8329143","ddc":["530"],"date_updated":"2023-11-13T09:21:31Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","_id":"14523","date_published":"2023-09-08T00:00:00Z","date_created":"2023-11-13T09:12:11Z","abstract":[{"text":"see Readme file","lang":"eng"}],"month":"09","main_file_link":[{"url":"https://doi.org/10.5281/ZENODO.8329143","open_access":"1"}],"oa":1,"publisher":"Zenodo","status":"public","department":[{"_id":"ScWa"}]},{"type":"dissertation","author":[{"orcid":"0000-0003-4844-6311","id":"3BE60946-F248-11E8-B48F-1D18A9856A87","last_name":"Riedl","first_name":"Michael","full_name":"Riedl, Michael"}],"alternative_title":["ISTA Thesis"],"day":"16","title":"Synchronization in collectively moving active matter","citation":{"apa":"Riedl, M. (2023). Synchronization in collectively moving active matter. Institute of Science and Technology Austria. https://doi.org/10.15479/14530","ama":"Riedl M. Synchronization in collectively moving active matter. 2023. doi:10.15479/14530","short":"M. Riedl, Synchronization in Collectively Moving Active Matter, Institute of Science and Technology Austria, 2023.","mla":"Riedl, Michael. Synchronization in Collectively Moving Active Matter. Institute of Science and Technology Austria, 2023, doi:10.15479/14530.","ista":"Riedl M. 2023. Synchronization in collectively moving active matter. Institute of Science and Technology Austria.","ieee":"M. Riedl, “Synchronization in collectively moving active matter,” Institute of Science and Technology Austria, 2023.","chicago":"Riedl, Michael. “Synchronization in Collectively Moving Active Matter.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/14530."},"ddc":["530","570"],"doi":"10.15479/14530","keyword":["Synchronization","Collective Movement","Active Matter","Cell Migration","Active Colloids"],"language":[{"iso":"eng"}],"related_material":{"record":[{"id":"10703","relation":"part_of_dissertation","status":"public"},{"status":"public","relation":"part_of_dissertation","id":"10791"},{"relation":"part_of_dissertation","id":"7932","status":"public"},{"status":"public","relation":"part_of_dissertation","id":"461"},{"status":"public","relation":"old_edition","id":"12726"}]},"supervisor":[{"last_name":"Hof","full_name":"Hof, Björn","first_name":"Björn","id":"3A374330-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2057-2754"}],"date_created":"2023-11-15T09:59:03Z","month":"11","page":"260","status":"public","department":[{"_id":"GradSch"},{"_id":"MiSi"}],"degree_awarded":"PhD","publisher":"Institute of Science and Technology Austria","oa_version":"Updated Version","has_accepted_license":"1","year":"2023","acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"Bio"}],"publication_identifier":{"issn":["2663 - 337X"]},"date_updated":"2023-11-30T10:55:13Z","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"14530","abstract":[{"text":"Most motions of many-body systems at any scale in nature with sufficient degrees of freedom tend to be chaotic; reaching from the orbital motion of planets, the air currents in our atmosphere, down to the water flowing through our pipelines or the movement of a population of bacteria. To the observer it is therefore intriguing when a moving collective exhibits order. Collective motion of flocks of birds, schools of fish or swarms of self-propelled particles or robots have been studied extensively over the past decades but the mechanisms involved in the transition from chaos to order remain unclear. Here, the interactions, that in most systems give rise to chaos, sustain order. In this thesis we investigate mechanisms that preserve, destabilize or lead to the ordered state. We show that endothelial cells migrating in circular confinements transition to a collective rotating state and concomitantly synchronize the frequencies of nucleating actin waves within individual cells. Consequently, the frequency dependent cell migration speed uniformizes across the population. Complementary to the WAVE dependent nucleation of traveling actin waves, we show that in leukocytes the actin polymerization depending on WASp generates pushing forces locally at stationary patches. Next, in pipe flows, we study methods to disrupt the self--sustaining cycle of turbulence and therefore relaminarize the flow. While we find in pulsating flow conditions that turbulence emerges through a helical instability during the decelerating phase. Finally, we show quantitatively in brain slices of mice that wild-type control neurons can compensate the migratory deficits of a genetically modified neuronal sub--population in the developing cortex. ","lang":"eng"}],"date_published":"2023-11-16T00:00:00Z","file":[{"file_name":"Thesis_Riedl_2023_corr.pdf","file_size":36743942,"creator":"mriedl","checksum":"52e1d0ab6c1abe59c82dfe8c9ff5f83a","date_updated":"2023-11-15T09:52:54Z","access_level":"open_access","content_type":"application/pdf","relation":"main_file","file_id":"14536","date_created":"2023-11-15T09:52:54Z","success":1}],"article_processing_charge":"No","file_date_updated":"2023-11-15T09:52:54Z","oa":1,"publication_status":"published"},{"language":[{"iso":"eng"}],"doi":"10.15479/14539","ddc":["000"],"related_material":{"record":[{"status":"public","relation":"part_of_dissertation","id":"1194"},{"status":"public","relation":"part_of_dissertation","id":"12000"},{"relation":"part_of_dissertation","id":"12511","status":"public"},{"relation":"part_of_dissertation","id":"14600","status":"public"},{"status":"public","id":"14601","relation":"part_of_dissertation"},{"relation":"part_of_dissertation","id":"9644","status":"public"},{"status":"public","relation":"part_of_dissertation","id":"10414"}]},"project":[{"_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","call_identifier":"H2020","grant_number":"863818","name":"Formal Methods for Stochastic Models: Algorithms and Applications"},{"grant_number":"665385","name":"International IST Doctoral Program","call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425"}],"day":"15","author":[{"last_name":"Zikelic","full_name":"Zikelic, Dorde","first_name":"Dorde","id":"294AA7A6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4681-1699"}],"type":"dissertation","alternative_title":["ISTA Thesis"],"citation":{"mla":"Zikelic, Dorde. Automated Verification and Control of Infinite State Stochastic Systems. Institute of Science and Technology Austria, 2023, doi:10.15479/14539.","ieee":"D. Zikelic, “Automated verification and control of infinite state stochastic systems,” Institute of Science and Technology Austria, 2023.","ista":"Zikelic D. 2023. Automated verification and control of infinite state stochastic systems. Institute of Science and Technology Austria.","chicago":"Zikelic, Dorde. “Automated Verification and Control of Infinite State Stochastic Systems.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/14539.","apa":"Zikelic, D. (2023). Automated verification and control of infinite state stochastic systems. Institute of Science and Technology Austria. https://doi.org/10.15479/14539","ama":"Zikelic D. Automated verification and control of infinite state stochastic systems. 2023. doi:10.15479/14539","short":"D. Zikelic, Automated Verification and Control of Infinite State Stochastic Systems, Institute of Science and Technology Austria, 2023."},"ec_funded":1,"title":"Automated verification and control of infinite state stochastic systems","department":[{"_id":"KrCh"},{"_id":"GradSch"}],"status":"public","publisher":"Institute of Science and Technology Austria","degree_awarded":"PhD","month":"11","supervisor":[{"full_name":"Chatterjee, Krishnendu","first_name":"Krishnendu","last_name":"Chatterjee","orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87"}],"date_created":"2023-11-15T13:39:10Z","page":"256","date_updated":"2025-07-14T09:10:10Z","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","publication_identifier":{"isbn":["978-3-99078-036-7"],"issn":["2663 - 337X"]},"oa_version":"Published Version","year":"2023","file_date_updated":"2023-11-15T13:44:24Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","short":"CC BY-NC-SA (4.0)"},"publication_status":"published","oa":1,"file":[{"file_name":"main.pdf","creator":"cchlebak","file_size":2116426,"date_updated":"2023-11-15T13:43:28Z","access_level":"open_access","checksum":"f23e002b0059ca78e1fbb864da52dd7e","content_type":"application/pdf","relation":"main_file","file_id":"14540","success":1,"date_created":"2023-11-15T13:43:28Z"},{"file_size":35884057,"creator":"cchlebak","file_name":"thesis_source.zip","access_level":"closed","date_updated":"2023-11-15T13:44:24Z","checksum":"80ca37618a3c7b59866875f8be9b15ed","relation":"source_file","file_id":"14541","content_type":"application/x-zip-compressed","date_created":"2023-11-15T13:44:24Z"}],"_id":"14539","date_published":"2023-11-15T00:00:00Z","abstract":[{"lang":"eng","text":"Stochastic systems provide a formal framework for modelling and quantifying uncertainty in systems and have been widely adopted in many application domains. Formal\r\nverification and control of finite state stochastic systems, a subfield of formal methods\r\nalso known as probabilistic model checking, is well studied. In contrast, formal verification and control of infinite state stochastic systems have received comparatively\r\nless attention. However, infinite state stochastic systems commonly arise in practice.\r\nFor instance, probabilistic models that contain continuous probability distributions such\r\nas normal or uniform, or stochastic dynamical systems which are a classical model for\r\ncontrol under uncertainty, both give rise to infinite state systems.\r\nThe goal of this thesis is to contribute to laying theoretical and algorithmic foundations\r\nof fully automated formal verification and control of infinite state stochastic systems,\r\nwith a particular focus on systems that may be executed over a long or infinite time.\r\nWe consider formal verification of infinite state stochastic systems in the setting of\r\nstatic analysis of probabilistic programs and formal control in the setting of controller\r\nsynthesis in stochastic dynamical systems. For both problems, we present some of the\r\nfirst fully automated methods for probabilistic (a.k.a. quantitative) reachability and\r\nsafety analysis applicable to infinite time horizon systems. We also advance the state\r\nof the art of probability 1 (a.k.a. qualitative) reachability analysis for both problems.\r\nFinally, for formal controller synthesis in stochastic dynamical systems, we present a\r\nnovel framework for learning neural network control policies in stochastic dynamical\r\nsystems with formal guarantees on correctness with respect to quantitative reachability,\r\nsafety or reach-avoid specifications.\r\n"}],"article_processing_charge":"No"},{"month":"10","date_created":"2023-11-15T23:48:14Z","quality_controlled":"1","department":[{"_id":"GradSch"},{"_id":"LaEr"},{"_id":"RoSe"}],"publication":"Reviews in Mathematical Physics","status":"public","publisher":"World Scientific Publishing","day":"31","type":"journal_article","author":[{"orcid":"0000-0003-1106-327X","id":"31d731d7-d235-11ea-ad11-b50331c8d7fb","last_name":"Henheik","first_name":"Sven Joscha","full_name":"Henheik, Sven Joscha"},{"id":"e1a2682f-dc8d-11ea-abe3-81da9ac728f1","orcid":"0000-0003-4476-2288","full_name":"Lauritsen, Asbjørn Bækgaard","first_name":"Asbjørn Bækgaard","last_name":"Lauritsen"},{"id":"5DA90512-D80F-11E9-8994-2E2EE6697425","orcid":"0000-0002-9071-5880","last_name":"Roos","first_name":"Barbara","full_name":"Roos, Barbara"}],"ec_funded":1,"citation":{"apa":"Henheik, S. J., Lauritsen, A. B., & Roos, B. (2023). Universality in low-dimensional BCS theory. Reviews in Mathematical Physics. World Scientific Publishing. https://doi.org/10.1142/s0129055x2360005x","ama":"Henheik SJ, Lauritsen AB, Roos B. Universality in low-dimensional BCS theory. Reviews in Mathematical Physics. 2023. doi:10.1142/s0129055x2360005x","short":"S.J. Henheik, A.B. Lauritsen, B. Roos, Reviews in Mathematical Physics (2023).","mla":"Henheik, Sven Joscha, et al. “Universality in Low-Dimensional BCS Theory.” Reviews in Mathematical Physics, 2360005, World Scientific Publishing, 2023, doi:10.1142/s0129055x2360005x.","ista":"Henheik SJ, Lauritsen AB, Roos B. 2023. Universality in low-dimensional BCS theory. Reviews in Mathematical Physics., 2360005.","ieee":"S. J. Henheik, A. B. Lauritsen, and B. Roos, “Universality in low-dimensional BCS theory,” Reviews in Mathematical Physics. World Scientific Publishing, 2023.","chicago":"Henheik, Sven Joscha, Asbjørn Bækgaard Lauritsen, and Barbara Roos. “Universality in Low-Dimensional BCS Theory.” Reviews in Mathematical Physics. World Scientific Publishing, 2023. https://doi.org/10.1142/s0129055x2360005x."},"title":"Universality in low-dimensional BCS theory","language":[{"iso":"eng"}],"doi":"10.1142/s0129055x2360005x","acknowledgement":"We thank Robert Seiringer for comments on the paper. J. H. gratefully acknowledges partial financial support by the ERC Advanced Grant “RMTBeyond”No. 101020331.This research was funded in part by the Austrian Science Fund (FWF) grantnumber I6427.","project":[{"call_identifier":"H2020","_id":"62796744-2b32-11ec-9570-940b20777f1d","grant_number":"101020331","name":"Random matrices beyond Wigner-Dyson-Mehta"},{"name":"Mathematical Challenges in BCS Theory of Superconductivity","grant_number":"I06427","_id":"bda63fe5-d553-11ed-ba76-a16e3d2f256b"}],"article_number":"2360005 ","abstract":[{"lang":"eng","text":"It is a remarkable property of BCS theory that the ratio of the energy gap at zero temperature Ξ\r\n and the critical temperature Tc is (approximately) given by a universal constant, independent of the microscopic details of the fermionic interaction. This universality has rigorously been proven quite recently in three spatial dimensions and three different limiting regimes: weak coupling, low density and high density. The goal of this short note is to extend the universal behavior to lower dimensions d=1,2 and give an exemplary proof in the weak coupling limit."}],"_id":"14542","date_published":"2023-10-31T00:00:00Z","arxiv":1,"article_processing_charge":"Yes (in subscription journal)","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"publication_status":"epub_ahead","oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1142/S0129055X2360005X"}],"article_type":"original","has_accepted_license":"1","year":"2023","oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2023-11-20T10:04:38Z","scopus_import":"1","external_id":{"arxiv":["2301.05621"]},"publication_identifier":{"issn":["0129-055X"],"eissn":["1793-6659"]}},{"citation":{"mla":"Phan, Duc T. Resonant Microwave Spectroscopy of Al-InAs. Institute of Science and Technology Austria, 2023, doi:10.15479/14547.","chicago":"Phan, Duc T. “Resonant Microwave Spectroscopy of Al-InAs.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/14547.","ieee":"D. T. Phan, “Resonant microwave spectroscopy of Al-InAs,” Institute of Science and Technology Austria, 2023.","ista":"Phan DT. 2023. Resonant microwave spectroscopy of Al-InAs. Institute of Science and Technology Austria.","ama":"Phan DT. Resonant microwave spectroscopy of Al-InAs. 2023. doi:10.15479/14547","apa":"Phan, D. T. (2023). Resonant microwave spectroscopy of Al-InAs. Institute of Science and Technology Austria. https://doi.org/10.15479/14547","short":"D.T. Phan, Resonant Microwave Spectroscopy of Al-InAs, Institute of Science and Technology Austria, 2023."},"title":"Resonant microwave spectroscopy of Al-InAs","day":"16","alternative_title":["ISTA Thesis"],"author":[{"full_name":"Phan, Duc T","first_name":"Duc T","last_name":"Phan","id":"29C8C0B4-F248-11E8-B48F-1D18A9856A87"}],"type":"dissertation","related_material":{"record":[{"status":"public","relation":"part_of_dissertation","id":"10851"},{"relation":"part_of_dissertation","id":"13264","status":"public"}]},"language":[{"iso":"eng"}],"keyword":["superconductor-semiconductor","superconductivity","Al","InAs","p-wave","superconductivity","JPA","microwave"],"doi":"10.15479/14547","ddc":["530"],"page":"80","month":"11","date_created":"2023-11-17T13:45:26Z","supervisor":[{"first_name":"Andrew P","full_name":"Higginbotham, Andrew P","last_name":"Higginbotham","orcid":"0000-0003-2607-2363","id":"4AD6785A-F248-11E8-B48F-1D18A9856A87"}],"publisher":"Institute of Science and Technology Austria","degree_awarded":"PhD","department":[{"_id":"GradSch"},{"_id":"AnHi"}],"status":"public","oa_version":"Published Version","has_accepted_license":"1","year":"2023","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","date_updated":"2023-11-30T10:56:04Z","publication_identifier":{"issn":["2663 - 337X"]},"acknowledged_ssus":[{"_id":"NanoFab"},{"_id":"Bio"}],"article_processing_charge":"No","file":[{"checksum":"db0c37d213bc002125bd59690e9db246","date_updated":"2023-11-22T09:46:06Z","access_level":"open_access","file_name":"Phan_Thesis_pdfa.pdf","creator":"pduc","file_size":34828019,"date_created":"2023-11-17T13:36:44Z","content_type":"application/pdf","file_id":"14548","relation":"main_file"},{"file_name":"dissertation_src.zip","file_size":279319709,"creator":"pduc","checksum":"8d3bd6afa279a0078ffd13e06bb6d56d","date_updated":"2023-11-17T13:47:54Z","access_level":"closed","content_type":"application/zip","file_id":"14549","relation":"source_file","date_created":"2023-11-17T13:44:53Z"}],"date_published":"2023-11-16T00:00:00Z","_id":"14547","abstract":[{"lang":"eng","text":"Superconductor-semiconductor heterostructures currently capture a significant amount of research interest and they serve as the physical platform in many proposals towards topological quantum computation.\r\nDespite being under extensive investigations, historically using transport techniques, the basic properties of the interface between the superconductor and the semiconductor remain to be understood.\r\n\r\nIn this thesis, two separate studies on the Al-InAs heterostructures are reported with the first focusing on the physics of the material motivated by the emergence of a new phase, the Bogoliubov-Fermi surface. \r\nThe second focuses on a technological application, a gate-tunable Josephson parametric amplifier.\r\n\r\nIn the first study, we investigate the hypothesized unconventional nature of the induced superconductivity at the interface between the Al thin film and the InAs quantum well.\r\nWe embed a two-dimensional Al-InAs hybrid system in a resonant microwave circuit allowing measurements of change in inductance.\r\nThe behaviour of the resonance in a range of temperature and in-plane magnetic field has been studied and compared with the theory of conventional s-wave superconductor and a two-component theory that includes both contribution of the $s$-wave pairing in Al and the intraband $p \\pm ip$ pairing in InAs.\r\nMeasuring the temperature dependence of resonant frequency, no discrepancy is found between data and the conventional theory.\r\nWe observe the breakdown of superconductivity due to an applied magnetic field which contradicts the conventional theory.\r\nIn contrast, the data can be captured quantitatively by fitting to a two-component model.\r\nWe find the evidence of the intraband $p \\pm ip$ pairing in the InAs and the emergence of the Bogoliubov-Fermi surfaces due to magnetic field with the characteristic value $B^* = 0.33~\\mathrm{T}$.\r\nFrom the fits, the sheet resistance of Al, the carrier density and mobility in InAs are determined.\r\nBy systematically studying the anisotropy of the circuit response, we find weak anisotropy for $B < B^*$ and increasingly strong anisotropy for $B > B^*$ resulting in a pronounced two-lobe structure in polar plot of frequency versus field angle.\r\nStrong resemblance between the field dependence of dissipation and superfluid density hints at a hidden signature of the Bogoliubov-Fermi surface that is burried in the dissipation data.\r\n\r\nIn the second study, we realize a parametric amplifier with a Josephson field effect transistor as the active element.\r\nThe device's modest construction consists of a gated SNS weak link embedded at the center of a coplanar waveguide resonator.\r\nBy applying a gate voltage, the resonant frequency is field-effect tunable over a range of 2 GHz.\r\nModelling the JoFET minimally as a parallel RL circuit, the dissipation introduced by the JoFET can be quantitatively related to the gate voltage.\r\nWe observed gate-tunable Kerr nonlinearity qualitatively in line with expectation.\r\nThe JoFET amplifier has 20 dB of gain, 4 MHz of instantaneous bandwidth, and a 1dB compression point of -125.5 dBm when operated at a fixed resonant frequency.\r\nIn general, the signal-to-noise ratio is improved by 5-7 dB when the JoFET amplifier is activated compared.\r\nThe noise of the measurement chain and insertion loss of relevant circuit elements are calibrated to determine the expected and the real noise performance of the JoFET amplifier.\r\nAs a quantification of the noise performance, the measured total input-referred noise of the JoFET amplifier is in good agreement with the estimated expectation which takes device loss into account.\r\nWe found that the noise performance of the device reported in this document approaches one photon of total input-referred added noise which is the quantum limit imposed in nondegenerate parametric amplifier."}],"publication_status":"published","oa":1,"file_date_updated":"2023-11-22T09:46:06Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","short":"CC BY-NC-SA (4.0)"}},{"publication_identifier":{"issn":["2405-4712"],"eissn":["2405-4720"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2023-11-20T11:24:34Z","scopus_import":"1","external_id":{"pmid":["37944515"]},"oa_version":"Published Version","has_accepted_license":"1","year":"2023","article_type":"original","oa":1,"publication_status":"published","volume":14,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"file_date_updated":"2023-11-20T11:22:52Z","issue":"11","article_processing_charge":"Yes (via OA deal)","abstract":[{"lang":"eng","text":"Methylation of CG dinucleotides (mCGs), which regulates eukaryotic genome functions, is epigenetically propagated by Dnmt1/MET1 methyltransferases. How mCG is established and transmitted across generations despite imperfect enzyme fidelity is unclear. Whether mCG variation in natural populations is governed by genetic or epigenetic inheritance also remains mysterious. Here, we show that MET1 de novo activity, which is enhanced by existing proximate methylation, seeds and stabilizes mCG in Arabidopsis thaliana genes. MET1 activity is restricted by active demethylation and suppressed by histone variant H2A.Z, producing localized mCG patterns. Based on these observations, we develop a stochastic mathematical model that precisely recapitulates mCG inheritance dynamics and predicts intragenic mCG patterns and their population-scale variation given only CG site spacing. Our results demonstrate that intragenic mCG establishment, inheritance, and variance constitute a unified epigenetic process, revealing that intragenic mCG undergoes large, millennia-long epigenetic fluctuations and can therefore mediate evolution on this timescale."}],"_id":"14551","date_published":"2023-11-15T00:00:00Z","file":[{"date_updated":"2023-11-20T11:22:52Z","access_level":"open_access","checksum":"101fdac59e6f1102d68ef91f2b5bd51a","file_name":"2023_CellSystems_Briffa.pdf","creator":"dernst","file_size":5587897,"success":1,"date_created":"2023-11-20T11:22:52Z","content_type":"application/pdf","relation":"main_file","file_id":"14580"}],"acknowledgement":"We would like to thank Xiaoqi Feng, Ander Movilla Miangolarra, and Suzanne de Bruijn for discussions. This work was supported by BBSRC Institute Strategic Programme GEN (BB/P013511/1) to M.H. and D.Z. and by a European Research Council grant MaintainMeth (725746) to D.Z.","project":[{"name":"Quantitative analysis of DNA methylation maintenance with chromatin","grant_number":"725746","_id":"62935a00-2b32-11ec-9570-eff30fa39068","call_identifier":"H2020"}],"pmid":1,"ddc":["570"],"doi":"10.1016/j.cels.2023.10.007","language":[{"iso":"eng"}],"title":"Millennia-long epigenetic fluctuations generate intragenic DNA methylation variance in Arabidopsis populations","ec_funded":1,"citation":{"ieee":"A. Briffa et al., “Millennia-long epigenetic fluctuations generate intragenic DNA methylation variance in Arabidopsis populations,” Cell Systems, vol. 14, no. 11. Elsevier, pp. 953–967, 2023.","ista":"Briffa A, Hollwey E, Shahzad Z, Moore JD, Lyons DB, Howard M, Zilberman D. 2023. Millennia-long epigenetic fluctuations generate intragenic DNA methylation variance in Arabidopsis populations. Cell Systems. 14(11), 953–967.","chicago":"Briffa, Amy, Elizabeth Hollwey, Zaigham Shahzad, Jonathan D. Moore, David B. Lyons, Martin Howard, and Daniel Zilberman. “Millennia-Long Epigenetic Fluctuations Generate Intragenic DNA Methylation Variance in Arabidopsis Populations.” Cell Systems. Elsevier, 2023. https://doi.org/10.1016/j.cels.2023.10.007.","mla":"Briffa, Amy, et al. “Millennia-Long Epigenetic Fluctuations Generate Intragenic DNA Methylation Variance in Arabidopsis Populations.” Cell Systems, vol. 14, no. 11, Elsevier, 2023, pp. 953–67, doi:10.1016/j.cels.2023.10.007.","short":"A. Briffa, E. Hollwey, Z. Shahzad, J.D. Moore, D.B. Lyons, M. Howard, D. Zilberman, Cell Systems 14 (2023) 953–967.","apa":"Briffa, A., Hollwey, E., Shahzad, Z., Moore, J. D., Lyons, D. B., Howard, M., & Zilberman, D. (2023). Millennia-long epigenetic fluctuations generate intragenic DNA methylation variance in Arabidopsis populations. Cell Systems. Elsevier. https://doi.org/10.1016/j.cels.2023.10.007","ama":"Briffa A, Hollwey E, Shahzad Z, et al. Millennia-long epigenetic fluctuations generate intragenic DNA methylation variance in Arabidopsis populations. Cell Systems. 2023;14(11):953-967. doi:10.1016/j.cels.2023.10.007"},"author":[{"full_name":"Briffa, Amy","first_name":"Amy","last_name":"Briffa"},{"id":"b8c4f54b-e484-11eb-8fdc-a54df64ef6dd","last_name":"Hollwey","first_name":"Elizabeth","full_name":"Hollwey, Elizabeth"},{"last_name":"Shahzad","first_name":"Zaigham","full_name":"Shahzad, Zaigham"},{"first_name":"Jonathan D.","full_name":"Moore, Jonathan D.","last_name":"Moore"},{"last_name":"Lyons","first_name":"David B.","full_name":"Lyons, David B."},{"last_name":"Howard","full_name":"Howard, Martin","first_name":"Martin"},{"orcid":"0000-0002-0123-8649","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","full_name":"Zilberman, Daniel","first_name":"Daniel","last_name":"Zilberman"}],"type":"journal_article","day":"15","publisher":"Elsevier","intvolume":" 14","status":"public","department":[{"_id":"DaZi"}],"quality_controlled":"1","publication":"Cell Systems","page":"953-967","date_created":"2023-11-19T23:00:54Z","month":"11"},{"volume":382,"publication_status":"published","_id":"14552","date_published":"2023-11-09T00:00:00Z","abstract":[{"lang":"eng","text":"Interactions between plants and herbivores are central in most ecosystems, but their strength is highly variable. The amount of variability within a system is thought to influence most aspects of plant-herbivore biology, from ecological stability to plant defense evolution. Our understanding of what influences variability, however, is limited by sparse data. We collected standardized surveys of herbivory for 503 plant species at 790 sites across 116° of latitude. With these data, we show that within-population variability in herbivory increases with latitude, decreases with plant size, and is phylogenetically structured. Differences in the magnitude of variability are thus central to how plant-herbivore biology varies across macroscale gradients. We argue that increased focus on interaction variability will advance understanding of patterns of life on Earth."}],"article_processing_charge":"No","issue":"6671","scopus_import":"1","external_id":{"pmid":["37943897"]},"date_updated":"2023-11-20T11:17:34Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"eissn":["1095-9203"]},"article_type":"original","year":"2023","oa_version":"None","publication":"Science","quality_controlled":"1","department":[{"_id":"NiBa"}],"intvolume":" 382","status":"public","publisher":"AAAS","month":"11","date_created":"2023-11-19T23:00:54Z","page":"679-683","language":[{"iso":"eng"}],"doi":"10.1126/science.adh8830","related_material":{"record":[{"status":"public","relation":"research_data","id":"14579"}]},"pmid":1,"acknowledgement":"The authors acknowledge funding for central project coordination from NSF Research Coordination Network grant DEB-2203582; the Ecology, Evolution, and Behavior Program at Michigan State University; and AgBioResearch at Michigan State University. Site-specific funding is listed in the supplementary materials.","day":"09","type":"journal_article","author":[{"first_name":"M. L.","full_name":"Robinson, M. L.","last_name":"Robinson"},{"first_name":"P. G.","full_name":"Hahn, P. G.","last_name":"Hahn"},{"full_name":"Inouye, B. D.","first_name":"B. D.","last_name":"Inouye"},{"first_name":"N.","full_name":"Underwood, N.","last_name":"Underwood"},{"last_name":"Whitehead","first_name":"S. R.","full_name":"Whitehead, S. R."},{"first_name":"K. C.","full_name":"Abbott, K. C.","last_name":"Abbott"},{"first_name":"E. M.","full_name":"Bruna, E. M.","last_name":"Bruna"},{"last_name":"Cacho","full_name":"Cacho, N. I.","first_name":"N. I."},{"first_name":"L. A.","full_name":"Dyer, L. A.","last_name":"Dyer"},{"last_name":"Abdala-Roberts","full_name":"Abdala-Roberts, L.","first_name":"L."},{"last_name":"Allen","full_name":"Allen, W. J.","first_name":"W. J."},{"last_name":"Andrade","first_name":"J. F.","full_name":"Andrade, J. 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Zarnetske, L.N. Zehr, Z. Zhong, W.C. Wetzel, Science 382 (2023) 679–683.","ama":"Robinson ML, Hahn PG, Inouye BD, et al. Plant size, latitude, and phylogeny explain within-population variability in herbivory. Science. 2023;382(6671):679-683. doi:10.1126/science.adh8830","apa":"Robinson, M. L., Hahn, P. G., Inouye, B. D., Underwood, N., Whitehead, S. R., Abbott, K. C., … Wetzel, W. C. (2023). Plant size, latitude, and phylogeny explain within-population variability in herbivory. Science. AAAS. https://doi.org/10.1126/science.adh8830","chicago":"Robinson, M. L., P. G. Hahn, B. D. Inouye, N. Underwood, S. R. Whitehead, K. C. Abbott, E. M. Bruna, et al. “Plant Size, Latitude, and Phylogeny Explain within-Population Variability in Herbivory.” Science. AAAS, 2023. https://doi.org/10.1126/science.adh8830.","ista":"Robinson ML et al. 2023. Plant size, latitude, and phylogeny explain within-population variability in herbivory. Science. 382(6671), 679–683.","ieee":"M. L. Robinson et al., “Plant size, latitude, and phylogeny explain within-population variability in herbivory,” Science, vol. 382, no. 6671. AAAS, pp. 679–683, 2023.","mla":"Robinson, M. L., et al. “Plant Size, Latitude, and Phylogeny Explain within-Population Variability in Herbivory.” Science, vol. 382, no. 6671, AAAS, 2023, pp. 679–83, doi:10.1126/science.adh8830."},"title":"Plant size, latitude, and phylogeny explain within-population variability in herbivory"}]