[{"publisher":"Springer Nature","department":[{"_id":"ChLa"}],"title":"On the implementation of baselines and lightweight conditional model extrapolation (LIMES) under class-prior shift","publication":"International Workshop on Reproducible Research in Pattern Recognition","oa_version":"None","conference":{"name":"RRPR: Reproducible Research in Pattern Recognition","end_date":"2022-08-21","location":"Montreal, Canada","start_date":"2022-08-21"},"date_created":"2023-10-08T22:01:18Z","alternative_title":["LNCS"],"doi":"10.1007/978-3-031-40773-4_6","date_updated":"2023-10-09T06:48:02Z","article_processing_charge":"No","author":[{"full_name":"Tomaszewska, Paulina","last_name":"Tomaszewska","first_name":"Paulina"},{"first_name":"Christoph","last_name":"Lampert","orcid":"0000-0001-8622-7887","full_name":"Lampert, Christoph","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2023-08-20T00:00:00Z","quality_controlled":"1","abstract":[{"lang":"eng","text":"This paper focuses on the implementation details of the baseline methods and a recent lightweight conditional model extrapolation algorithm LIMES [5] for streaming data under class-prior shift. LIMES achieves superior performance over the baseline methods, especially concerning the minimum-across-day accuracy, which is important for the users of the system. In this work, the key measures to facilitate reproducibility and enhance the credibility of the results are described."}],"scopus_import":"1","type":"conference","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"67-73","volume":14068,"publication_status":"published","year":"2023","intvolume":" 14068","_id":"14410","day":"20","status":"public","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1611-3349"],"issn":["0302-9743"],"isbn":["9783031407727"]},"month":"08","citation":{"apa":"Tomaszewska, P., & Lampert, C. (2023). On the implementation of baselines and lightweight conditional model extrapolation (LIMES) under class-prior shift. In International Workshop on Reproducible Research in Pattern Recognition (Vol. 14068, pp. 67–73). Montreal, Canada: Springer Nature. https://doi.org/10.1007/978-3-031-40773-4_6","chicago":"Tomaszewska, Paulina, and Christoph Lampert. “On the Implementation of Baselines and Lightweight Conditional Model Extrapolation (LIMES) under Class-Prior Shift.” In International Workshop on Reproducible Research in Pattern Recognition, 14068:67–73. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-40773-4_6.","ieee":"P. Tomaszewska and C. Lampert, “On the implementation of baselines and lightweight conditional model extrapolation (LIMES) under class-prior shift,” in International Workshop on Reproducible Research in Pattern Recognition, Montreal, Canada, 2023, vol. 14068, pp. 67–73.","ista":"Tomaszewska P, Lampert C. 2023. On the implementation of baselines and lightweight conditional model extrapolation (LIMES) under class-prior shift. International Workshop on Reproducible Research in Pattern Recognition. RRPR: Reproducible Research in Pattern Recognition, LNCS, vol. 14068, 67–73.","mla":"Tomaszewska, Paulina, and Christoph Lampert. “On the Implementation of Baselines and Lightweight Conditional Model Extrapolation (LIMES) under Class-Prior Shift.” International Workshop on Reproducible Research in Pattern Recognition, vol. 14068, Springer Nature, 2023, pp. 67–73, doi:10.1007/978-3-031-40773-4_6.","short":"P. Tomaszewska, C. Lampert, in:, International Workshop on Reproducible Research in Pattern Recognition, Springer Nature, 2023, pp. 67–73.","ama":"Tomaszewska P, Lampert C. On the implementation of baselines and lightweight conditional model extrapolation (LIMES) under class-prior shift. In: International Workshop on Reproducible Research in Pattern Recognition. Vol 14068. Springer Nature; 2023:67-73. doi:10.1007/978-3-031-40773-4_6"}},{"_id":"14411","has_accepted_license":"1","year":"2023","page":"18-35","volume":14137,"type":"conference","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"apa":"Beneš, N., Brim, L., Pastva, S., Šafránek, D., & Šmijáková, E. (2023). Phenotype control of partially specified boolean networks. In 21st International Conference on Computational Methods in Systems Biology (Vol. 14137, pp. 18–35). Luxembourg City, Luxembourg: Springer Nature. https://doi.org/10.1007/978-3-031-42697-1_2","chicago":"Beneš, Nikola, Luboš Brim, Samuel Pastva, David Šafránek, and Eva Šmijáková. “Phenotype Control of Partially Specified Boolean Networks.” In 21st International Conference on Computational Methods in Systems Biology, 14137:18–35. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-42697-1_2.","ieee":"N. Beneš, L. Brim, S. Pastva, D. Šafránek, and E. Šmijáková, “Phenotype control of partially specified boolean networks,” in 21st International Conference on Computational Methods in Systems Biology, Luxembourg City, Luxembourg, 2023, vol. 14137, pp. 18–35.","mla":"Beneš, Nikola, et al. “Phenotype Control of Partially Specified Boolean Networks.” 21st International Conference on Computational Methods in Systems Biology, vol. 14137, Springer Nature, 2023, pp. 18–35, doi:10.1007/978-3-031-42697-1_2.","ista":"Beneš N, Brim L, Pastva S, Šafránek D, Šmijáková E. 2023. Phenotype control of partially specified boolean networks. 21st International Conference on Computational Methods in Systems Biology. CMSB: Computational Methods in Systems Biology, LNBI, vol. 14137, 18–35.","short":"N. Beneš, L. Brim, S. Pastva, D. Šafránek, E. Šmijáková, in:, 21st International Conference on Computational Methods in Systems Biology, Springer Nature, 2023, pp. 18–35.","ama":"Beneš N, Brim L, Pastva S, Šafránek D, Šmijáková E. Phenotype control of partially specified boolean networks. In: 21st International Conference on Computational Methods in Systems Biology. Vol 14137. Springer Nature; 2023:18-35. doi:10.1007/978-3-031-42697-1_2"},"publication_identifier":{"issn":["0302-9743"],"eissn":["1611-3349"],"isbn":["9783031426964"]},"status":"public","oa":1,"acknowledgement":"This work was supported by the Czech Foundation grant No. GA22-10845S, Grant Agency of Masaryk University grant No. MUNI/G/1771/2020, and the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413.","oa_version":"Submitted Version","date_created":"2023-10-08T22:01:18Z","ec_funded":1,"department":[{"_id":"ToHe"}],"title":"Phenotype control of partially specified boolean networks","publication":"21st International Conference on Computational Methods in Systems Biology","publisher":"Springer Nature","abstract":[{"lang":"eng","text":"Partially specified Boolean networks (PSBNs) represent a promising framework for the qualitative modelling of biological systems in which the logic of interactions is not completely known. Phenotype control aims to stabilise the network in states exhibiting specific traits.\r\nIn this paper, we define the phenotype control problem in the context of asynchronous PSBNs and propose a novel semi-symbolic algorithm for solving this problem with permanent variable perturbations."}],"intvolume":" 14137","publication_status":"published","file":[{"file_size":691582,"file_name":"cmsb2023.pdf","checksum":"6f71bdaedb770b52380222fd9f4d7937","date_updated":"2024-02-16T08:26:32Z","file_id":"14997","content_type":"application/pdf","success":1,"date_created":"2024-02-16T08:26:32Z","relation":"main_file","access_level":"open_access","creator":"spastva"}],"project":[{"name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","call_identifier":"H2020"}],"language":[{"iso":"eng"}],"month":"09","day":"09","ddc":["000"],"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"conference":{"name":"CMSB: Computational Methods in Systems Biology","end_date":"2023-09-15","location":"Luxembourg City, Luxembourg","start_date":"2023-09-13"},"file_date_updated":"2024-02-16T08:26:32Z","scopus_import":"1","quality_controlled":"1","author":[{"last_name":"Beneš","first_name":"Nikola","full_name":"Beneš, Nikola"},{"full_name":"Brim, Luboš","first_name":"Luboš","last_name":"Brim"},{"full_name":"Pastva, Samuel","id":"07c5ea74-f61c-11ec-a664-aa7c5d957b2b","first_name":"Samuel","orcid":"0000-0003-1993-0331","last_name":"Pastva"},{"first_name":"David","last_name":"Šafránek","full_name":"Šafránek, David"},{"first_name":"Eva","last_name":"Šmijáková","full_name":"Šmijáková, Eva"}],"date_published":"2023-09-09T00:00:00Z","alternative_title":["LNBI"],"doi":"10.1007/978-3-031-42697-1_2","date_updated":"2024-02-20T09:02:04Z","article_processing_charge":"No"},{"oa_version":"Published Version","date_created":"2023-10-09T09:21:05Z","ec_funded":1,"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","department":[{"_id":"KrCh"}],"title":"Entropic risk for turn-based stochastic games","publication":"48th International Symposium on Mathematical Foundations of Computer Science","abstract":[{"text":"Entropic risk (ERisk) is an established risk measure in finance, quantifying risk by an exponential re-weighting of rewards. We study ERisk for the first time in the context of turn-based stochastic games with the total reward objective. This gives rise to an objective function that demands the control of systems in a risk-averse manner. We show that the resulting games are determined and, in particular, admit optimal memoryless deterministic strategies. This contrasts risk measures that previously have been considered in the special case of Markov decision processes and that require randomization and/or memory. We provide several results on the decidability and the computational complexity of the threshold problem, i.e. whether the optimal value of ERisk exceeds a given threshold. In the most general case, the problem is decidable subject to Shanuel’s conjecture. If all inputs are rational, the resulting threshold problem can be solved using algebraic numbers, leading to decidability via a polynomial-time reduction to the existential theory of the reals. Further restrictions on the encoding of the input allow the solution of the threshold problem in NP∩coNP. Finally, an approximation algorithm for the optimal value of ERisk is provided.","lang":"eng"}],"arxiv":1,"has_accepted_license":"1","year":"2023","_id":"14417","type":"conference","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":272,"publication_identifier":{"eissn":["1868-8969"],"isbn":["9783959772921"]},"citation":{"short":"C. Baier, K. Chatterjee, T. Meggendorfer, J. Piribauer, in:, 48th International Symposium on Mathematical Foundations of Computer Science, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023.","ista":"Baier C, Chatterjee K, Meggendorfer T, Piribauer J. 2023. Entropic risk for turn-based stochastic games. 48th International Symposium on Mathematical Foundations of Computer Science. MFCS: Symposium on Mathematical Foundations of Computer Science, LIPIcs, vol. 272, 15.","mla":"Baier, Christel, et al. “Entropic Risk for Turn-Based Stochastic Games.” 48th International Symposium on Mathematical Foundations of Computer Science, vol. 272, 15, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:10.4230/LIPIcs.MFCS.2023.15.","ama":"Baier C, Chatterjee K, Meggendorfer T, Piribauer J. Entropic risk for turn-based stochastic games. In: 48th International Symposium on Mathematical Foundations of Computer Science. Vol 272. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:10.4230/LIPIcs.MFCS.2023.15","apa":"Baier, C., Chatterjee, K., Meggendorfer, T., & Piribauer, J. (2023). Entropic risk for turn-based stochastic games. In 48th International Symposium on Mathematical Foundations of Computer Science (Vol. 272). Bordeaux, France: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.MFCS.2023.15","chicago":"Baier, Christel, Krishnendu Chatterjee, Tobias Meggendorfer, and Jakob Piribauer. “Entropic Risk for Turn-Based Stochastic Games.” In 48th International Symposium on Mathematical Foundations of Computer Science, Vol. 272. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. https://doi.org/10.4230/LIPIcs.MFCS.2023.15.","ieee":"C. Baier, K. Chatterjee, T. Meggendorfer, and J. Piribauer, “Entropic risk for turn-based stochastic games,” in 48th International Symposium on Mathematical Foundations of Computer Science, Bordeaux, France, 2023, vol. 272."},"external_id":{"arxiv":["2307.06611"]},"status":"public","acknowledgement":"This work was partly funded by the ERC CoG 863818 (ForM-SMArt), the DFG Grant\r\n389792660 as part of TRR 248 (Foundations of Perspicuous Software Systems), the Cluster of\r\nExcellence EXC 2050/1 (CeTI, project ID 390696704, as part of Germany’s Excellence Strategy), and the DFG projects BA-1679/11-1 and BA-1679/12-1.","oa":1,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"conference":{"start_date":"2023-08-28","location":"Bordeaux, France","end_date":"2023-09-01","name":"MFCS: Symposium on Mathematical Foundations of Computer Science"},"article_number":"15","file_date_updated":"2023-10-09T09:19:11Z","quality_controlled":"1","scopus_import":"1","doi":"10.4230/LIPIcs.MFCS.2023.15","date_updated":"2025-07-14T09:09:57Z","alternative_title":["LIPIcs"],"article_processing_charge":"Yes","date_published":"2023-08-21T00:00:00Z","author":[{"last_name":"Baier","first_name":"Christel","full_name":"Baier, Christel"},{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","last_name":"Chatterjee","first_name":"Krishnendu"},{"orcid":"0000-0002-1712-2165","last_name":"Meggendorfer","first_name":"Tobias","id":"b21b0c15-30a2-11eb-80dc-f13ca25802e1","full_name":"Meggendorfer, Tobias"},{"full_name":"Piribauer, Jakob","first_name":"Jakob","last_name":"Piribauer"}],"publication_status":"published","file":[{"file_size":826843,"checksum":"402281b17ed669bbf149d0fdf68ac201","file_name":"2023_LIPIcsMFCS_Baier.pdf","date_updated":"2023-10-09T09:19:11Z","file_id":"14418","content_type":"application/pdf","date_created":"2023-10-09T09:19:11Z","success":1,"relation":"main_file","access_level":"open_access","creator":"dernst"}],"intvolume":" 272","language":[{"iso":"eng"}],"project":[{"_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","name":"Formal Methods for Stochastic Models: Algorithms and Applications","grant_number":"863818","call_identifier":"H2020"}],"month":"08","day":"21","ddc":["000"]},{"ddc":["510"],"day":"11","isi":1,"month":"10","project":[{"name":"Random matrices beyond Wigner-Dyson-Mehta","grant_number":"101020331","_id":"62796744-2b32-11ec-9570-940b20777f1d","call_identifier":"H2020"}],"language":[{"iso":"eng"}],"file":[{"relation":"main_file","access_level":"open_access","creator":"dernst","content_type":"application/pdf","success":1,"date_created":"2023-10-16T07:07:24Z","file_id":"14429","date_updated":"2023-10-16T07:07:24Z","file_size":721399,"file_name":"2023_JourPhysics_Henheik.pdf","checksum":"5b68de147dd4c608b71a6e0e844d2ce9"}],"publication_status":"published","intvolume":" 56","article_processing_charge":"Yes (via OA deal)","doi":"10.1088/1751-8121/acfe62","date_updated":"2023-12-13T13:01:25Z","date_published":"2023-10-11T00:00:00Z","author":[{"full_name":"Henheik, Sven Joscha","id":"31d731d7-d235-11ea-ad11-b50331c8d7fb","first_name":"Sven Joscha","orcid":"0000-0003-1106-327X","last_name":"Henheik"},{"full_name":"Tumulka, Roderich","first_name":"Roderich","last_name":"Tumulka"}],"quality_controlled":"1","scopus_import":"1","article_number":"445201","file_date_updated":"2023-10-16T07:07:24Z","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"issue":"44","external_id":{"isi":["001080908000001"],"arxiv":["2211.16606"]},"article_type":"original","status":"public","oa":1,"acknowledgement":"J H gratefully acknowledges partial financial support by the ERC Advanced Grant 'RMTBeyond' No. 101020331.","publication_identifier":{"eissn":["1751-8121"],"issn":["1751-8113"]},"citation":{"mla":"Henheik, Sven Joscha, and Roderich Tumulka. “Creation Rate of Dirac Particles at a Point Source.” Journal of Physics A: Mathematical and Theoretical, vol. 56, no. 44, 445201, IOP Publishing, 2023, doi:10.1088/1751-8121/acfe62.","short":"S.J. Henheik, R. Tumulka, Journal of Physics A: Mathematical and Theoretical 56 (2023).","ista":"Henheik SJ, Tumulka R. 2023. Creation rate of Dirac particles at a point source. Journal of Physics A: Mathematical and Theoretical. 56(44), 445201.","ama":"Henheik SJ, Tumulka R. Creation rate of Dirac particles at a point source. Journal of Physics A: Mathematical and Theoretical. 2023;56(44). doi:10.1088/1751-8121/acfe62","apa":"Henheik, S. J., & Tumulka, R. (2023). Creation rate of Dirac particles at a point source. Journal of Physics A: Mathematical and Theoretical. IOP Publishing. https://doi.org/10.1088/1751-8121/acfe62","ieee":"S. J. Henheik and R. Tumulka, “Creation rate of Dirac particles at a point source,” Journal of Physics A: Mathematical and Theoretical, vol. 56, no. 44. IOP Publishing, 2023.","chicago":"Henheik, Sven Joscha, and Roderich Tumulka. “Creation Rate of Dirac Particles at a Point Source.” Journal of Physics A: Mathematical and Theoretical. IOP Publishing, 2023. https://doi.org/10.1088/1751-8121/acfe62."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","volume":56,"year":"2023","has_accepted_license":"1","_id":"14421","arxiv":1,"abstract":[{"lang":"eng","text":"Only recently has it been possible to construct a self-adjoint Hamiltonian that involves the creation of Dirac particles at a point source in 3d space. Its definition makes use of an interior-boundary condition. Here, we develop for this Hamiltonian a corresponding theory of the Bohmian configuration. That is, we (non-rigorously) construct a Markov jump process $(Q_t)_{t\\in\\mathbb{R}}$ in the configuration space of a variable number of particles that is $|\\psi_t|^2$-distributed at every time t and follows Bohmian trajectories between the jumps. The jumps correspond to particle creation or annihilation events and occur either to or from a configuration with a particle located at the source. The process is the natural analog of Bell's jump process, and a central piece in its construction is the determination of the rate of particle creation. The construction requires an analysis of the asymptotic behavior of the Bohmian trajectories near the source. We find that the particle reaches the source with radial speed 0, but orbits around the source infinitely many times in finite time before absorption (or after emission)."}],"publisher":"IOP Publishing","publication":"Journal of Physics A: Mathematical and Theoretical","department":[{"_id":"GradSch"},{"_id":"LaEr"}],"title":"Creation rate of Dirac particles at a point source","ec_funded":1,"date_created":"2023-10-12T12:42:53Z","oa_version":"Published Version"},{"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","type":"dissertation","page":"148","year":"2023","has_accepted_license":"1","supervisor":[{"last_name":"Vogels","orcid":"0000-0003-3295-6181","first_name":"Tim P","id":"CB6FF8D2-008F-11EA-8E08-2637E6697425","full_name":"Vogels, Tim P"}],"_id":"14422","status":"public","publication_identifier":{"issn":["2663 - 337X"]},"citation":{"apa":"Confavreux, B. J. (2023). Synapseek: Meta-learning synaptic plasticity rules. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:14422","ieee":"B. J. Confavreux, “Synapseek: Meta-learning synaptic plasticity rules,” Institute of Science and Technology Austria, 2023.","chicago":"Confavreux, Basile J. “Synapseek: Meta-Learning Synaptic Plasticity Rules.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/at:ista:14422.","short":"B.J. Confavreux, Synapseek: Meta-Learning Synaptic Plasticity Rules, Institute of Science and Technology Austria, 2023.","mla":"Confavreux, Basile J. Synapseek: Meta-Learning Synaptic Plasticity Rules. Institute of Science and Technology Austria, 2023, doi:10.15479/at:ista:14422.","ista":"Confavreux BJ. 2023. Synapseek: Meta-learning synaptic plasticity rules. Institute of Science and Technology Austria.","ama":"Confavreux BJ. Synapseek: Meta-learning synaptic plasticity rules. 2023. doi:10.15479/at:ista:14422"},"publisher":"Institute of Science and Technology Austria","title":"Synapseek: Meta-learning synaptic plasticity rules","department":[{"_id":"GradSch"},{"_id":"TiVo"}],"ec_funded":1,"date_created":"2023-10-12T14:13:25Z","oa_version":"Published Version","abstract":[{"lang":"eng","text":"Animals exhibit a remarkable ability to learn and remember new behaviors, skills, and associations throughout their lifetime. These capabilities are made possible thanks to a variety of\r\nchanges in the brain throughout adulthood, regrouped under the term \"plasticity\". Some cells\r\nin the brain —neurons— and specifically changes in the connections between neurons, the\r\nsynapses, were shown to be crucial for the formation, selection, and consolidation of memories\r\nfrom past experiences. These ongoing changes of synapses across time are called synaptic\r\nplasticity. Understanding how a myriad of biochemical processes operating at individual\r\nsynapses can somehow work in concert to give rise to meaningful changes in behavior is a\r\nfascinating problem and an active area of research.\r\nHowever, the experimental search for the precise plasticity mechanisms at play in the brain\r\nis daunting, as it is difficult to control and observe synapses during learning. Theoretical\r\napproaches have thus been the default method to probe the plasticity-behavior connection. Such\r\nstudies attempt to extract unifying principles across synapses and model all observed synaptic\r\nchanges using plasticity rules: equations that govern the evolution of synaptic strengths across\r\ntime in neuronal network models. These rules can use many relevant quantities to determine\r\nthe magnitude of synaptic changes, such as the precise timings of pre- and postsynaptic\r\naction potentials, the recent neuronal activity levels, the state of neighboring synapses, etc.\r\nHowever, analytical studies rely heavily on human intuition and are forced to make simplifying\r\nassumptions about plasticity rules.\r\nIn this thesis, we aim to assist and augment human intuition in this search for plasticity rules.\r\nWe explore whether a numerical approach could automatically discover the plasticity rules\r\nthat elicit desired behaviors in large networks of interconnected neurons. This approach is\r\ndubbed meta-learning synaptic plasticity: learning plasticity rules which themselves will make\r\nneuronal networks learn how to solve a desired task. We first write all the potential plasticity\r\nmechanisms to consider using a single expression with adjustable parameters. We then optimize\r\nthese plasticity parameters using evolutionary strategies or Bayesian inference on tasks known\r\nto involve synaptic plasticity, such as familiarity detection and network stabilization.\r\nWe show that these automated approaches are powerful tools, able to complement established\r\nanalytical methods. By comprehensively screening plasticity rules at all synapse types in\r\nrealistic, spiking neuronal network models, we discover entire sets of degenerate plausible\r\nplasticity rules that reliably elicit memory-related behaviors. Our approaches allow for more\r\nrobust experimental predictions, by abstracting out the idiosyncrasies of individual plasticity\r\nrules, and provide fresh insights on synaptic plasticity in spiking network models.\r\n"}],"file":[{"file_size":30599717,"file_name":"Confavreux_Thesis_2A.pdf","checksum":"7f636555eae7803323df287672fd13ed","embargo":"2024-10-12","file_id":"14424","date_updated":"2023-10-12T14:54:52Z","content_type":"application/pdf","embargo_to":"open_access","date_created":"2023-10-12T14:53:50Z","relation":"main_file","creator":"cchlebak","access_level":"closed"},{"content_type":"application/x-zip-compressed","date_created":"2023-10-18T07:38:34Z","relation":"source_file","access_level":"closed","creator":"cchlebak","file_size":68406739,"file_name":"Confavreux Thesis.zip","checksum":"725e85946db92290a4583a0de9779e1b","file_id":"14440","date_updated":"2023-10-18T07:56:08Z"}],"publication_status":"published","ddc":["610"],"day":"12","month":"10","project":[{"_id":"0aacfa84-070f-11eb-9043-d7eb2c709234","name":"Learning the shape of synaptic plasticity rules for neuronal architectures and function through machine learning.","grant_number":"819603","call_identifier":"H2020"}],"language":[{"iso":"eng"}],"file_date_updated":"2023-10-18T07:56:08Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","short":"CC BY-NC-SA (4.0)","image":"/images/cc_by_nc_sa.png"},"article_processing_charge":"No","alternative_title":["ISTA Thesis"],"doi":"10.15479/at:ista:14422","date_updated":"2023-10-18T09:20:56Z","related_material":{"record":[{"id":"9633","relation":"part_of_dissertation","status":"public"}]},"author":[{"first_name":"Basile J","last_name":"Confavreux","full_name":"Confavreux, Basile J","id":"C7610134-B532-11EA-BD9F-F5753DDC885E"}],"date_published":"2023-10-12T00:00:00Z","degree_awarded":"PhD"},{"publication":"Nature Communications","department":[{"_id":"BiCh"},{"_id":"GradSch"}],"title":"Mechanistic insight on water dissociation on pristine low-index TiO2 surfaces from machine learning molecular dynamics simulations","publisher":"Springer Nature","date_created":"2023-10-15T22:01:10Z","ec_funded":1,"oa_version":"Published Version","arxiv":1,"abstract":[{"text":"Water adsorption and dissociation processes on pristine low-index TiO2 interfaces are important but poorly understood outside the well-studied anatase (101) and rutile (110). To understand these, we construct three sets of machine learning potentials that are simultaneously applicable to various TiO2 surfaces, based on three density-functional-theory approximations. Here we show the water dissociation free energies on seven pristine TiO2 surfaces, and predict that anatase (100), anatase (110), rutile (001), and rutile (011) favor water dissociation, anatase (101) and rutile (100) have mostly molecular adsorption, while the simulations of rutile (110) sensitively depend on the slab thickness and molecular adsorption is preferred with thick slabs. Moreover, using an automated algorithm, we reveal that these surfaces follow different types of atomistic mechanisms for proton transfer and water dissociation: one-step, two-step, or both. These mechanisms can be rationalized based on the arrangements of water molecules on the different surfaces. Our finding thus demonstrates that the different pristine TiO2 surfaces react with water in distinct ways, and cannot be represented using just the low-energy anatase (101) and rutile (110) surfaces.","lang":"eng"}],"volume":14,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","_id":"14425","year":"2023","has_accepted_license":"1","acknowledgement":"F.S., J.H., and B.C. thank the Swiss National Supercomputing Centre (CSCS) for the generous allocation of CPU hours via production project s1108 at the Piz Daint supercomputer. B.C. acknowledges resources provided by the Cambridge Tier-2 system operated by the University of Cambridge Research Computing Service funded by EPSRC Tier-2 capital grant EP/P020259/1. J.C. acknowledges the Beijing Natural Science Foundation for support under grant No. JQ22001. F.S., and J.H. thank the Swiss Platform for Advanced Scientific Computing (PASC) via the 2021-2024 “Ab Initio Molecular Dynamics at the Exa-Scale” project. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101034413.","oa":1,"status":"public","article_type":"original","external_id":{"pmid":["37783698"],"arxiv":["2303.07433"],"isi":["001084354900008"]},"citation":{"ama":"Zeng Z, Wodaczek F, Liu K, et al. Mechanistic insight on water dissociation on pristine low-index TiO2 surfaces from machine learning molecular dynamics simulations. Nature Communications. 2023;14. doi:10.1038/s41467-023-41865-8","short":"Z. Zeng, F. Wodaczek, K. Liu, F. Stein, J. Hutter, J. Chen, B. Cheng, Nature Communications 14 (2023).","mla":"Zeng, Zezhu, et al. “Mechanistic Insight on Water Dissociation on Pristine Low-Index TiO2 Surfaces from Machine Learning Molecular Dynamics Simulations.” Nature Communications, vol. 14, 6131, Springer Nature, 2023, doi:10.1038/s41467-023-41865-8.","ista":"Zeng Z, Wodaczek F, Liu K, Stein F, Hutter J, Chen J, Cheng B. 2023. Mechanistic insight on water dissociation on pristine low-index TiO2 surfaces from machine learning molecular dynamics simulations. Nature Communications. 14, 6131.","chicago":"Zeng, Zezhu, Felix Wodaczek, Keyang Liu, Frederick Stein, Jürg Hutter, Ji Chen, and Bingqing Cheng. “Mechanistic Insight on Water Dissociation on Pristine Low-Index TiO2 Surfaces from Machine Learning Molecular Dynamics Simulations.” Nature Communications. Springer Nature, 2023. https://doi.org/10.1038/s41467-023-41865-8.","ieee":"Z. Zeng et al., “Mechanistic insight on water dissociation on pristine low-index TiO2 surfaces from machine learning molecular dynamics simulations,” Nature Communications, vol. 14. Springer Nature, 2023.","apa":"Zeng, Z., Wodaczek, F., Liu, K., Stein, F., Hutter, J., Chen, J., & Cheng, B. (2023). Mechanistic insight on water dissociation on pristine low-index TiO2 surfaces from machine learning molecular dynamics simulations. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-023-41865-8"},"publication_identifier":{"eissn":["2041-1723"]},"file_date_updated":"2023-10-16T07:34:49Z","article_number":"6131","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"author":[{"full_name":"Zeng, Zezhu","id":"54a2c730-803f-11ed-ab7e-95b29d2680e7","first_name":"Zezhu","last_name":"Zeng"},{"last_name":"Wodaczek","orcid":"0009-0000-1457-795X","first_name":"Felix","id":"8b4b6a9f-32b0-11ee-9fa8-bbe85e26258e","full_name":"Wodaczek, Felix"},{"first_name":"Keyang","last_name":"Liu","full_name":"Liu, Keyang"},{"full_name":"Stein, Frederick","first_name":"Frederick","last_name":"Stein"},{"full_name":"Hutter, Jürg","last_name":"Hutter","first_name":"Jürg"},{"last_name":"Chen","first_name":"Ji","full_name":"Chen, Ji"},{"full_name":"Cheng, Bingqing","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9","first_name":"Bingqing","last_name":"Cheng","orcid":"0000-0002-3584-9632"}],"date_published":"2023-10-02T00:00:00Z","article_processing_charge":"Yes","related_material":{"link":[{"url":"https://github.com/BingqingCheng/TiO2-water","relation":"software"}]},"date_updated":"2023-12-13T13:02:07Z","doi":"10.1038/s41467-023-41865-8","scopus_import":"1","quality_controlled":"1","intvolume":" 14","file":[{"relation":"main_file","access_level":"open_access","creator":"dernst","content_type":"application/pdf","date_created":"2023-10-16T07:34:49Z","success":1,"file_id":"14432","date_updated":"2023-10-16T07:34:49Z","file_size":3194116,"checksum":"7d1dffd36b672ec679f08f70ce79da87","file_name":"2023_NatureComm_Zeng.pdf"}],"publication_status":"published","pmid":1,"ddc":["540","000"],"day":"02","isi":1,"month":"10","language":[{"iso":"eng"}],"project":[{"name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","call_identifier":"H2020"}]},{"citation":{"apa":"Unterweger, I. A., Klepstad, J., Hannezo, E. B., Lundegaard, P. R., Trusina, A., & Ober, E. A. (2023). Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics. PLoS Biology. Public Library of Science. https://doi.org/10.1371/journal.pbio.3002315","ieee":"I. A. Unterweger, J. Klepstad, E. B. Hannezo, P. R. Lundegaard, A. Trusina, and E. A. Ober, “Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics,” PLoS Biology, vol. 21, no. 10. Public Library of Science, 2023.","chicago":"Unterweger, Iris A., Julie Klepstad, Edouard B Hannezo, Pia R. Lundegaard, Ala Trusina, and Elke A. Ober. “Lineage Tracing Identifies Heterogeneous Hepatoblast Contribution to Cell Lineages and Postembryonic Organ Growth Dynamics.” PLoS Biology. Public Library of Science, 2023. https://doi.org/10.1371/journal.pbio.3002315.","mla":"Unterweger, Iris A., et al. “Lineage Tracing Identifies Heterogeneous Hepatoblast Contribution to Cell Lineages and Postembryonic Organ Growth Dynamics.” PLoS Biology, vol. 21, no. 10, e3002315, Public Library of Science, 2023, doi:10.1371/journal.pbio.3002315.","short":"I.A. Unterweger, J. Klepstad, E.B. Hannezo, P.R. Lundegaard, A. Trusina, E.A. Ober, PLoS Biology 21 (2023).","ista":"Unterweger IA, Klepstad J, Hannezo EB, Lundegaard PR, Trusina A, Ober EA. 2023. Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics. PLoS Biology. 21(10), e3002315.","ama":"Unterweger IA, Klepstad J, Hannezo EB, Lundegaard PR, Trusina A, Ober EA. Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics. PLoS Biology. 2023;21(10). doi:10.1371/journal.pbio.3002315"},"publication_identifier":{"eissn":["1545-7885"]},"acknowledgement":"We thank the Ober group for discussion and comments on the manuscript. We are grateful to\r\nDr. F. Lemaigre for feedback on the manuscript and Dr. T. Piotrowski for invaluable support.\r\nWe thank the department of experimental medicine (AEM) in Copenhagen for expert fish\r\ncare. We gratefully acknowledge the DanStem Imaging Platform (University of Copenhagen)\r\nfor support and assistance in this work.\r\nThis work is supported by Novo Nordisk Foundation grant NNF17CC0027852 (EAO);\r\nNordisk Foundation grant NNF19OC0058327 (EAO); Novo Nordisk Foundation grant\r\nNNF17OC0031204 (PRL); https://novonordiskfonden.dk/en/; Danish National\r\nResearch Foundation grant DNRF116 (EAO and AT); https://dg.dk/en/; John and Birthe Meyer\r\nFoundation (PRL) and European Research Council (ERC) under the EU Horizon 2020 research and Innovation Programme Grant Agreement No. 851288 (EH).","status":"public","oa":1,"article_type":"original","issue":"10","_id":"14426","has_accepted_license":"1","year":"2023","volume":21,"type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"To meet the physiological demands of the body, organs need to establish a functional tissue architecture and adequate size as the embryo develops to adulthood. In the liver, uni- and bipotent progenitor differentiation into hepatocytes and biliary epithelial cells (BECs), and their relative proportions, comprise the functional architecture. Yet, the contribution of individual liver progenitors at the organ level to both fates, and their specific proportion, is unresolved. Combining mathematical modelling with organ-wide, multispectral FRaeppli-NLS lineage tracing in zebrafish, we demonstrate that a precise BEC-to-hepatocyte ratio is established (i) fast, (ii) solely by heterogeneous lineage decisions from uni- and bipotent progenitors, and (iii) independent of subsequent cell type–specific proliferation. Extending lineage tracing to adulthood determined that embryonic cells undergo spatially heterogeneous three-dimensional growth associated with distinct environments. Strikingly, giant clusters comprising almost half a ventral lobe suggest lobe-specific dominant-like growth behaviours. We show substantial hepatocyte polyploidy in juveniles representing another hallmark of postembryonic liver growth. Our findings uncover heterogeneous progenitor contributions to tissue architecture-defining cell type proportions and postembryonic organ growth as key mechanisms forming the adult liver."}],"oa_version":"Published Version","date_created":"2023-10-15T22:01:10Z","ec_funded":1,"title":"Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics","department":[{"_id":"EdHa"}],"publication":"PLoS Biology","publisher":"Public Library of Science","language":[{"iso":"eng"}],"project":[{"_id":"05943252-7A3F-11EA-A408-12923DDC885E","name":"Design Principles of Branching Morphogenesis","grant_number":"851288","call_identifier":"H2020"}],"month":"10","day":"04","ddc":["570"],"intvolume":" 21","publication_status":"published","file":[{"relation":"main_file","access_level":"open_access","creator":"dernst","content_type":"application/pdf","success":1,"date_created":"2023-10-16T07:20:49Z","date_updated":"2023-10-16T07:20:49Z","file_id":"14431","file_size":6193110,"file_name":"2023_PloSBiology_Unterweger.pdf","checksum":"40a2b11b41d70a0e5939f8a52b66e389"}],"scopus_import":"1","quality_controlled":"1","author":[{"last_name":"Unterweger","first_name":"Iris A.","full_name":"Unterweger, Iris A."},{"full_name":"Klepstad, Julie","last_name":"Klepstad","first_name":"Julie"},{"id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","full_name":"Hannezo, Edouard B","last_name":"Hannezo","orcid":"0000-0001-6005-1561","first_name":"Edouard B"},{"last_name":"Lundegaard","first_name":"Pia R.","full_name":"Lundegaard, Pia R."},{"last_name":"Trusina","first_name":"Ala","full_name":"Trusina, Ala"},{"full_name":"Ober, Elke A.","last_name":"Ober","first_name":"Elke A."}],"date_published":"2023-10-04T00:00:00Z","doi":"10.1371/journal.pbio.3002315","date_updated":"2023-10-16T07:25:48Z","related_material":{"link":[{"url":"https://github.com/JulieKlepstad/LiverDevelopment","relation":"software"}]},"article_processing_charge":"No","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file_date_updated":"2023-10-16T07:20:49Z","article_number":"e3002315"},{"year":"2023","_id":"14427","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","publication_identifier":{"eissn":["1432-0916"],"issn":["0010-3616"]},"citation":{"ieee":"J. Chen, V. Kaloshin, and H. K. Zhang, “Length spectrum rigidity for piecewise analytic Bunimovich billiards,” Communications in Mathematical Physics. Springer Nature, 2023.","chicago":"Chen, Jianyu, Vadim Kaloshin, and Hong Kun Zhang. “Length Spectrum Rigidity for Piecewise Analytic Bunimovich Billiards.” Communications in Mathematical Physics. Springer Nature, 2023. https://doi.org/10.1007/s00220-023-04837-z.","apa":"Chen, J., Kaloshin, V., & Zhang, H. K. (2023). Length spectrum rigidity for piecewise analytic Bunimovich billiards. Communications in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s00220-023-04837-z","ama":"Chen J, Kaloshin V, Zhang HK. Length spectrum rigidity for piecewise analytic Bunimovich billiards. Communications in Mathematical Physics. 2023. doi:10.1007/s00220-023-04837-z","mla":"Chen, Jianyu, et al. “Length Spectrum Rigidity for Piecewise Analytic Bunimovich Billiards.” Communications in Mathematical Physics, Springer Nature, 2023, doi:10.1007/s00220-023-04837-z.","short":"J. Chen, V. Kaloshin, H.K. Zhang, Communications in Mathematical Physics (2023).","ista":"Chen J, Kaloshin V, Zhang HK. 2023. Length spectrum rigidity for piecewise analytic Bunimovich billiards. Communications in Mathematical Physics."},"article_type":"original","external_id":{"arxiv":["1902.07330"],"isi":["001073177200001"]},"oa":1,"acknowledgement":"VK acknowledges a partial support by the NSF grant DMS-1402164 and ERC Grant #885707. Discussions with Martin Leguil and Jacopo De Simoi were very useful. JC visited the University of Maryland and thanks for the hospitality. Also, JC was partially supported by the National Key Research and Development Program of China (No.2022YFA1005802), the NSFC Grant 12001392 and NSF of Jiangsu BK20200850. H.-K. Zhang is partially supported by the National Science Foundation (DMS-2220211), as well as Simons Foundation Collaboration Grants for Mathematicians (706383).","status":"public","ec_funded":1,"date_created":"2023-10-15T22:01:11Z","oa_version":"Preprint","publisher":"Springer Nature","publication":"Communications in Mathematical Physics","department":[{"_id":"VaKa"}],"title":"Length spectrum rigidity for piecewise analytic Bunimovich billiards","abstract":[{"text":"In the paper, we establish Squash Rigidity Theorem—the dynamical spectral rigidity for piecewise analytic Bunimovich squash-type stadia whose convex arcs are homothetic. We also establish Stadium Rigidity Theorem—the dynamical spectral rigidity for piecewise analytic Bunimovich stadia whose flat boundaries are a priori fixed. In addition, for smooth Bunimovich squash-type stadia we compute the Lyapunov exponents along the maximal period two orbit, as well as the value of the Peierls’ Barrier function from the maximal marked length spectrum associated to the rotation number 2n/4n+1.","lang":"eng"}],"arxiv":1,"publication_status":"epub_ahead","main_file_link":[{"url":"https://arxiv.org/abs/1902.07330","open_access":"1"}],"month":"09","isi":1,"language":[{"iso":"eng"}],"project":[{"grant_number":"885707","name":"Spectral rigidity and integrability for billiards and geodesic flows","_id":"9B8B92DE-BA93-11EA-9121-9846C619BF3A","call_identifier":"H2020"}],"day":"29","quality_controlled":"1","scopus_import":"1","article_processing_charge":"No","doi":"10.1007/s00220-023-04837-z","date_updated":"2023-12-13T13:02:44Z","date_published":"2023-09-29T00:00:00Z","author":[{"full_name":"Chen, Jianyu","first_name":"Jianyu","last_name":"Chen"},{"orcid":"0000-0002-6051-2628","last_name":"Kaloshin","first_name":"Vadim","id":"FE553552-CDE8-11E9-B324-C0EBE5697425","full_name":"Kaloshin, Vadim"},{"full_name":"Zhang, Hong Kun","last_name":"Zhang","first_name":"Hong Kun"}]},{"abstract":[{"lang":"eng","text":"Suppose we have two hash functions h1 and h2, but we trust the security of only one of them. To mitigate this worry, we wish to build a hash combiner Ch1,h2 which is secure so long as one of the underlying hash functions is. This question has been well-studied in the regime of collision resistance. In this case, concatenating the two hash function outputs clearly works. Unfortunately, a long series of works (Boneh and Boyen, CRYPTO’06; Pietrzak, Eurocrypt’07; Pietrzak, CRYPTO’08) showed no (noticeably) shorter combiner for collision resistance is possible.\r\nIn this work, we revisit this pessimistic state of affairs, motivated by the observation that collision-resistance is insufficient for many interesting applications of cryptographic hash functions anyway. We argue the right formulation of the “hash combiner” is to build what we call random oracle (RO) combiners, utilizing stronger assumptions for stronger constructions.\r\nIndeed, we circumvent the previous lower bounds for collision resistance by constructing a simple length-preserving RO combiner C˜h1,h2Z1,Z2(M)=h1(M,Z1)⊕h2(M,Z2),where Z1,Z2\r\n are random salts of appropriate length. We show that this extra randomness is necessary for RO combiners, and indeed our construction is somewhat tight with this lower bound.\r\nOn the negative side, we show that one cannot generically apply the composition theorem to further replace “monolithic” hash functions h1 and h2 by some simpler indifferentiable construction (such as the Merkle-Damgård transformation) from smaller components, such as fixed-length compression functions. Finally, despite this issue, we directly prove collision resistance of the Merkle-Damgård variant of our combiner, where h1 and h2 are replaced by iterative Merkle-Damgård hashes applied to a fixed-length compression function. Thus, we can still subvert the concatenation barrier for collision-resistance combiners while utilizing practically small fixed-length components underneath."}],"oa_version":"Preprint","date_created":"2023-10-15T22:01:11Z","title":"Random oracle combiners: Breaking the concatenation barrier for collision-resistance","department":[{"_id":"KrPi"}],"publication":"43rd Annual International Cryptology Conference","publisher":"Springer Nature","citation":{"apa":"Dodis, Y., Ferguson, N., Goldin, E., Hall, P., & Pietrzak, K. Z. (2023). Random oracle combiners: Breaking the concatenation barrier for collision-resistance. In 43rd Annual International Cryptology Conference (Vol. 14082, pp. 514–546). Santa Barbara, CA, United States: Springer Nature. https://doi.org/10.1007/978-3-031-38545-2_17","ieee":"Y. Dodis, N. Ferguson, E. Goldin, P. Hall, and K. Z. Pietrzak, “Random oracle combiners: Breaking the concatenation barrier for collision-resistance,” in 43rd Annual International Cryptology Conference, Santa Barbara, CA, United States, 2023, vol. 14082, pp. 514–546.","chicago":"Dodis, Yevgeniy, Niels Ferguson, Eli Goldin, Peter Hall, and Krzysztof Z Pietrzak. “Random Oracle Combiners: Breaking the Concatenation Barrier for Collision-Resistance.” In 43rd Annual International Cryptology Conference, 14082:514–46. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-38545-2_17.","ista":"Dodis Y, Ferguson N, Goldin E, Hall P, Pietrzak KZ. 2023. Random oracle combiners: Breaking the concatenation barrier for collision-resistance. 43rd Annual International Cryptology Conference. CRYPTO: Advances in Cryptology, LNCS, vol. 14082, 514–546.","mla":"Dodis, Yevgeniy, et al. “Random Oracle Combiners: Breaking the Concatenation Barrier for Collision-Resistance.” 43rd Annual International Cryptology Conference, vol. 14082, Springer Nature, 2023, pp. 514–46, doi:10.1007/978-3-031-38545-2_17.","short":"Y. Dodis, N. Ferguson, E. Goldin, P. Hall, K.Z. Pietrzak, in:, 43rd Annual International Cryptology Conference, Springer Nature, 2023, pp. 514–546.","ama":"Dodis Y, Ferguson N, Goldin E, Hall P, Pietrzak KZ. Random oracle combiners: Breaking the concatenation barrier for collision-resistance. In: 43rd Annual International Cryptology Conference. Vol 14082. Springer Nature; 2023:514-546. doi:10.1007/978-3-031-38545-2_17"},"publication_identifier":{"isbn":["9783031385445"],"issn":["0302-9743"],"eissn":["1611-3349"]},"status":"public","oa":1,"_id":"14428","year":"2023","page":"514-546","volume":14082,"type":"conference","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","quality_controlled":"1","date_published":"2023-08-09T00:00:00Z","author":[{"first_name":"Yevgeniy","last_name":"Dodis","full_name":"Dodis, Yevgeniy"},{"last_name":"Ferguson","first_name":"Niels","full_name":"Ferguson, Niels"},{"last_name":"Goldin","first_name":"Eli","full_name":"Goldin, Eli"},{"last_name":"Hall","first_name":"Peter","full_name":"Hall, Peter"},{"id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","full_name":"Pietrzak, Krzysztof Z","last_name":"Pietrzak","orcid":"0000-0002-9139-1654","first_name":"Krzysztof Z"}],"doi":"10.1007/978-3-031-38545-2_17","alternative_title":["LNCS"],"date_updated":"2023-10-16T08:02:11Z","article_processing_charge":"No","conference":{"end_date":"2023-08-24","name":"CRYPTO: Advances in Cryptology","start_date":"2023-08-20","location":"Santa Barbara, CA, United States"},"language":[{"iso":"eng"}],"month":"08","day":"09","main_file_link":[{"open_access":"1","url":"https://eprint.iacr.org/2023/1041"}],"intvolume":" 14082","publication_status":"published"},{"acknowledged_ssus":[{"_id":"EM-Fac"}],"article_number":"2303719","keyword":["Mechanical Engineering","Mechanics of Materials","General Materials Science"],"quality_controlled":"1","date_published":"2023-07-24T00:00:00Z","author":[{"full_name":"He, Ren","first_name":"Ren","last_name":"He"},{"full_name":"Yang, Linlin","first_name":"Linlin","last_name":"Yang"},{"first_name":"Yu","last_name":"Zhang","full_name":"Zhang, Yu"},{"first_name":"Daochuan","last_name":"Jiang","full_name":"Jiang, Daochuan"},{"last_name":"Lee","orcid":"0000-0002-6962-8598","first_name":"Seungho","id":"BB243B88-D767-11E9-B658-BC13E6697425","full_name":"Lee, Seungho"},{"id":"03a7e858-01b1-11ec-8b71-99ae6c4a05bc","full_name":"Horta, Sharona","last_name":"Horta","first_name":"Sharona"},{"full_name":"Liang, Zhifu","first_name":"Zhifu","last_name":"Liang"},{"full_name":"Lu, Xuan","first_name":"Xuan","last_name":"Lu"},{"full_name":"Ostovari Moghaddam, Ahmad","first_name":"Ahmad","last_name":"Ostovari Moghaddam"},{"last_name":"Li","first_name":"Junshan","full_name":"Li, Junshan"},{"full_name":"Ibáñez, Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","orcid":"0000-0001-5013-2843","last_name":"Ibáñez"},{"first_name":"Ying","last_name":"Xu","full_name":"Xu, Ying"},{"full_name":"Zhou, Yingtang","first_name":"Yingtang","last_name":"Zhou"},{"first_name":"Andreu","last_name":"Cabot","full_name":"Cabot, Andreu"}],"article_processing_charge":"No","doi":"10.1002/adma.202303719","date_updated":"2023-12-13T13:03:23Z","publication_status":"epub_ahead","month":"07","isi":1,"project":[{"_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A","name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery"}],"language":[{"iso":"eng"}],"pmid":1,"day":"24","date_created":"2023-10-17T10:52:23Z","oa_version":"None","publication":"Advanced Materials","title":"A 3d‐4d‐5d high entropy alloy as a bifunctional oxygen catalyst for robust aqueous zinc–air batteries","department":[{"_id":"MaIb"}],"publisher":"Wiley","abstract":[{"lang":"eng","text":"High entropy alloys (HEAs) are highly suitable candidate catalysts for oxygen evolution and reduction reactions (OER/ORR) as they offer numerous parameters for optimizing the electronic structure and catalytic sites. Herein, FeCoNiMoW HEA nanoparticles are synthesized using a solution‐based low‐temperature approach. Such FeCoNiMoW nanoparticles show high entropy properties, subtle lattice distortions, and modulated electronic structure, leading to superior OER performance with an overpotential of 233 mV at 10 mA cm−2 and 276 mV at 100 mA cm−2. Density functional theory calculations reveal the electronic structures of the FeCoNiMoW active sites with an optimized d‐band center position that enables suitable adsorption of OOH* intermediates and reduces the Gibbs free energy barrier in the OER process. Aqueous zinc–air batteries (ZABs) based on this HEA demonstrate a high open circuit potential of 1.59 V, a peak power density of 116.9 mW cm−2, a specific capacity of 857 mAh gZn−1, and excellent stability for over 660 h of continuous charge–discharge cycles. Flexible and solid ZABs are also assembled and tested, displaying excellent charge–discharge performance at different bending angles. This work shows the significance of 4d/5d metal‐modulated electronic structure and optimized adsorption ability to improve the performance of OER/ORR, ZABs, and beyond."}],"_id":"14434","year":"2023","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","citation":{"ista":"He R, Yang L, Zhang Y, Jiang D, Lee S, Horta S, Liang Z, Lu X, Ostovari Moghaddam A, Li J, Ibáñez M, Xu Y, Zhou Y, Cabot A. 2023. A 3d‐4d‐5d high entropy alloy as a bifunctional oxygen catalyst for robust aqueous zinc–air batteries. Advanced Materials., 2303719.","mla":"He, Ren, et al. “A 3d‐4d‐5d High Entropy Alloy as a Bifunctional Oxygen Catalyst for Robust Aqueous Zinc–Air Batteries.” Advanced Materials, 2303719, Wiley, 2023, doi:10.1002/adma.202303719.","short":"R. He, L. Yang, Y. Zhang, D. Jiang, S. Lee, S. Horta, Z. Liang, X. Lu, A. Ostovari Moghaddam, J. Li, M. Ibáñez, Y. Xu, Y. Zhou, A. Cabot, Advanced Materials (2023).","ama":"He R, Yang L, Zhang Y, et al. A 3d‐4d‐5d high entropy alloy as a bifunctional oxygen catalyst for robust aqueous zinc–air batteries. Advanced Materials. 2023. doi:10.1002/adma.202303719","apa":"He, R., Yang, L., Zhang, Y., Jiang, D., Lee, S., Horta, S., … Cabot, A. (2023). A 3d‐4d‐5d high entropy alloy as a bifunctional oxygen catalyst for robust aqueous zinc–air batteries. Advanced Materials. Wiley. https://doi.org/10.1002/adma.202303719","chicago":"He, Ren, Linlin Yang, Yu Zhang, Daochuan Jiang, Seungho Lee, Sharona Horta, Zhifu Liang, et al. “A 3d‐4d‐5d High Entropy Alloy as a Bifunctional Oxygen Catalyst for Robust Aqueous Zinc–Air Batteries.” Advanced Materials. Wiley, 2023. https://doi.org/10.1002/adma.202303719.","ieee":"R. He et al., “A 3d‐4d‐5d high entropy alloy as a bifunctional oxygen catalyst for robust aqueous zinc–air batteries,” Advanced Materials. Wiley, 2023."},"publication_identifier":{"issn":["0935-9648","1521-4095"]},"status":"public","acknowledgement":"The authors acknowledge funding from Generalitat de Catalunya 2021 SGR 01581; the project COMBENERGY, PID2019-105490RB-C32, from the Spanish Ministerio de Ciencia e Innovación; the National Natural Science Foundation of China (22102002); the Anhui Provincial Natural Science Foundation (2108085QE192); Zhejiang Province key research and development project (2023C01191); the Foundation of State Key Laboratory of High-efficiency Utilization of Coal and Green Chemical Engineering (GrantNo.2022-K31); and The Key Research and Development Program of Hebei Province (20314305D). IREC is funded by the CERCA Programme from the Generalitat de Catalunya. L.L.Y. thanks the China Scholarship Council (CSC) for the scholarship support (202008130132). This research was supported by the Scientific Service Units (SSU) of ISTA (Institute of Science and Technology Austria) through resources provided by the Electron Microscopy Facility (EMF). S.L., S.H., and M.I. acknowledge funding by ISTA and the Werner Siemens.","external_id":{"pmid":["37487245"],"isi":["001083876900001"]},"article_type":"original"},{"publication_identifier":{"issn":["0935-9648"],"eissn":["1521-4095"]},"language":[{"iso":"eng"}],"month":"08","isi":1,"citation":{"chicago":"Zeng, Guifang, Qing Sun, Sharona Horta, Shang Wang, Xuan Lu, Chaoyue Zhang, Jing Li, et al. “A Layered Bi2Te3@PPy Cathode for Aqueous Zinc Ion Batteries: Mechanism and Application in Printed Flexible Batteries.” Advanced Materials. Wiley, n.d. https://doi.org/10.1002/adma.202305128.","ieee":"G. Zeng et al., “A layered Bi2Te3@PPy cathode for aqueous zinc ion batteries: Mechanism and application in printed flexible batteries,” Advanced Materials. Wiley.","apa":"Zeng, G., Sun, Q., Horta, S., Wang, S., Lu, X., Zhang, C., … Cabot, A. (n.d.). A layered Bi2Te3@PPy cathode for aqueous zinc ion batteries: Mechanism and application in printed flexible batteries. Advanced Materials. Wiley. https://doi.org/10.1002/adma.202305128","ama":"Zeng G, Sun Q, Horta S, et al. A layered Bi2Te3@PPy cathode for aqueous zinc ion batteries: Mechanism and application in printed flexible batteries. Advanced Materials. doi:10.1002/adma.202305128","ista":"Zeng G, Sun Q, Horta S, Wang S, Lu X, Zhang C, Li J, Li J, Ci L, Tian Y, Ibáñez M, Cabot A. A layered Bi2Te3@PPy cathode for aqueous zinc ion batteries: Mechanism and application in printed flexible batteries. Advanced Materials., 2305128.","short":"G. Zeng, Q. Sun, S. Horta, S. Wang, X. Lu, C. Zhang, J. Li, J. Li, L. Ci, Y. Tian, M. Ibáñez, A. Cabot, Advanced Materials (n.d.).","mla":"Zeng, Guifang, et al. “A Layered Bi2Te3@PPy Cathode for Aqueous Zinc Ion Batteries: Mechanism and Application in Printed Flexible Batteries.” Advanced Materials, 2305128, Wiley, doi:10.1002/adma.202305128."},"day":"09","external_id":{"isi":["001085681000001"],"pmid":["37555532"]},"article_type":"original","pmid":1,"status":"public","publication_status":"accepted","year":"2023","_id":"14435","type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","abstract":[{"text":"Low‐cost, safe, and environmental‐friendly rechargeable aqueous zinc‐ion batteries (ZIBs) are promising as next‐generation energy storage devices for wearable electronics among other applications. However, sluggish ionic transport kinetics and the unstable electrode structure during ionic insertion/extraction hampers their deployment. Herein, we propose a new cathode material based on a layered metal chalcogenide (LMC), bismuth telluride (Bi2Te3), coated with polypyrrole (PPy). Taking advantage of the PPy coating, the Bi2Te3@PPy composite presents strong ionic absorption affinity, high oxidation resistance, and high structural stability. The ZIBs based on Bi2Te3@PPy cathodes exhibit high capacities and ultra‐long lifespans of over 5000 cycles. They also present outstanding stability even under bending. In addition, we analyze here the reaction mechanism using in situ X‐ray diffraction, X‐ray photoelectron spectroscopy, and computational tools and demonstrate that, in the aqueous system, Zn2+ is not inserted into the cathode as previously assumed. In contrast, proton charge storage dominates the process. Overall, this work not only shows the great potential of LMCs as ZIBs cathode materials and the advantages of PPy coating, but also clarifies the charge/discharge mechanism in rechargeable ZIBs based on LMCs.","lang":"eng"}],"keyword":["Mechanical Engineering","Mechanics of Materials","General Materials Science"],"date_updated":"2023-12-13T13:03:53Z","doi":"10.1002/adma.202305128","article_processing_charge":"No","date_published":"2023-08-09T00:00:00Z","author":[{"full_name":"Zeng, Guifang","last_name":"Zeng","first_name":"Guifang"},{"full_name":"Sun, Qing","first_name":"Qing","last_name":"Sun"},{"first_name":"Sharona","last_name":"Horta","full_name":"Horta, Sharona","id":"03a7e858-01b1-11ec-8b71-99ae6c4a05bc"},{"first_name":"Shang","last_name":"Wang","full_name":"Wang, Shang"},{"first_name":"Xuan","last_name":"Lu","full_name":"Lu, Xuan"},{"first_name":"Chaoyue","last_name":"Zhang","full_name":"Zhang, Chaoyue"},{"full_name":"Li, Jing","first_name":"Jing","last_name":"Li"},{"full_name":"Li, Junshan","last_name":"Li","first_name":"Junshan"},{"last_name":"Ci","first_name":"Lijie","full_name":"Ci, Lijie"},{"full_name":"Tian, Yanhong","first_name":"Yanhong","last_name":"Tian"},{"first_name":"Maria","orcid":"0000-0001-5013-2843","last_name":"Ibáñez","full_name":"Ibáñez, Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Cabot, Andreu","last_name":"Cabot","first_name":"Andreu"}],"oa_version":"None","date_created":"2023-10-17T10:53:56Z","article_number":"2305128","publisher":"Wiley","title":"A layered Bi2Te3@PPy cathode for aqueous zinc ion batteries: Mechanism and application in printed flexible batteries","department":[{"_id":"MaIb"}],"publication":"Advanced Materials"},{"article_type":"original","external_id":{"arxiv":["2207.03156"]},"acknowledgement":"Funding from the European Union’s Horizon 2020 research and innovation programme under the ERC grant agreement No 694227 is acknowledged. Open access funding provided by Institute of Science and Technology (IST Austria).","status":"public","oa":1,"publication_identifier":{"eissn":["1432-0916"],"issn":["0010-3616"]},"citation":{"ama":"Brooks M, Seiringer R. The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy. Communications in Mathematical Physics. 2023;404:287-337. doi:10.1007/s00220-023-04841-3","short":"M. Brooks, R. Seiringer, Communications in Mathematical Physics 404 (2023) 287–337.","mla":"Brooks, Morris, and Robert Seiringer. “The Fröhlich Polaron at Strong Coupling: Part I - The Quantum Correction to the Classical Energy.” Communications in Mathematical Physics, vol. 404, Springer Nature, 2023, pp. 287–337, doi:10.1007/s00220-023-04841-3.","ista":"Brooks M, Seiringer R. 2023. The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy. Communications in Mathematical Physics. 404, 287–337.","chicago":"Brooks, Morris, and Robert Seiringer. “The Fröhlich Polaron at Strong Coupling: Part I - The Quantum Correction to the Classical Energy.” Communications in Mathematical Physics. Springer Nature, 2023. https://doi.org/10.1007/s00220-023-04841-3.","ieee":"M. Brooks and R. Seiringer, “The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy,” Communications in Mathematical Physics, vol. 404. Springer Nature, pp. 287–337, 2023.","apa":"Brooks, M., & Seiringer, R. (2023). The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy. Communications in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s00220-023-04841-3"},"type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"287-337","volume":404,"has_accepted_license":"1","year":"2023","_id":"14441","arxiv":1,"abstract":[{"lang":"eng","text":"We study the Fröhlich polaron model in R3, and establish the subleading term in the strong coupling asymptotics of its ground state energy, corresponding to the quantum corrections to the classical energy determined by the Pekar approximation."}],"publisher":"Springer Nature","title":"The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy","department":[{"_id":"RoSe"}],"publication":"Communications in Mathematical Physics","oa_version":"Published Version","ec_funded":1,"date_created":"2023-10-22T22:01:13Z","day":"01","ddc":["510"],"language":[{"iso":"eng"}],"project":[{"_id":"25C6DC12-B435-11E9-9278-68D0E5697425","grant_number":"694227","name":"Analysis of quantum many-body systems","call_identifier":"H2020"}],"month":"11","publication_status":"published","file":[{"content_type":"application/pdf","success":1,"date_created":"2023-10-31T12:21:39Z","relation":"main_file","access_level":"open_access","creator":"dernst","file_size":832375,"file_name":"2023_CommMathPhysics_Brooks.pdf","checksum":"1ae49b39247cb6b40ff75997381581b8","date_updated":"2023-10-31T12:21:39Z","file_id":"14477"}],"intvolume":" 404","doi":"10.1007/s00220-023-04841-3","date_updated":"2023-10-31T12:22:51Z","article_processing_charge":"Yes (via OA deal)","author":[{"orcid":"0000-0002-6249-0928","last_name":"Brooks","first_name":"Morris","id":"B7ECF9FC-AA38-11E9-AC9A-0930E6697425","full_name":"Brooks, Morris"},{"id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","full_name":"Seiringer, Robert","orcid":"0000-0002-6781-0521","last_name":"Seiringer","first_name":"Robert"}],"date_published":"2023-11-01T00:00:00Z","quality_controlled":"1","scopus_import":"1","file_date_updated":"2023-10-31T12:21:39Z","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"}},{"citation":{"ista":"Rojas Vega MN, De Castro P, Soto R. 2023. Mixtures of self-propelled particles interacting with asymmetric obstacles. The European Physical Journal E. 46(10), 95.","short":"M.N. Rojas Vega, P. De Castro, R. Soto, The European Physical Journal E 46 (2023).","mla":"Rojas Vega, Mauricio Nicolas, et al. “Mixtures of Self-Propelled Particles Interacting with Asymmetric Obstacles.” The European Physical Journal E, vol. 46, no. 10, 95, Springer Nature, 2023, doi:10.1140/epje/s10189-023-00354-y.","ama":"Rojas Vega MN, De Castro P, Soto R. Mixtures of self-propelled particles interacting with asymmetric obstacles. The European Physical Journal E. 2023;46(10). doi:10.1140/epje/s10189-023-00354-y","apa":"Rojas Vega, M. N., De Castro, P., & Soto, R. (2023). Mixtures of self-propelled particles interacting with asymmetric obstacles. The European Physical Journal E. Springer Nature. https://doi.org/10.1140/epje/s10189-023-00354-y","chicago":"Rojas Vega, Mauricio Nicolas, Pablo De Castro, and Rodrigo Soto. “Mixtures of Self-Propelled Particles Interacting with Asymmetric Obstacles.” The European Physical Journal E. Springer Nature, 2023. https://doi.org/10.1140/epje/s10189-023-00354-y.","ieee":"M. N. Rojas Vega, P. De Castro, and R. Soto, “Mixtures of self-propelled particles interacting with asymmetric obstacles,” The European Physical Journal E, vol. 46, no. 10. Springer Nature, 2023."},"publication_identifier":{"issn":["1292-8941"],"eissn":["1292-895X"]},"status":"public","acknowledgement":"MR-V and RS are supported by Fondecyt Grant No. 1220536 and Millennium Science Initiative Program NCN19_170D of ANID, Chile. P.d.C. was supported by Scholarships Nos. 2021/10139-2 and 2022/13872-5 and ICTP-SAIFR Grant No. 2021/14335-0, all granted by São Paulo Research Foundation (FAPESP), Brazil.","article_type":"original","external_id":{"pmid":["37819444"]},"issue":"10","_id":"14442","year":"2023","volume":46,"type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"text":"In the presence of an obstacle, active particles condensate into a surface “wetting” layer due to persistent motion. If the obstacle is asymmetric, a rectification current arises in addition to wetting. Asymmetric geometries are therefore commonly used to concentrate microorganisms like bacteria and sperms. However, most studies neglect the fact that biological active matter is diverse, composed of individuals with distinct self-propulsions. Using simulations, we study a mixture of “fast” and “slow” active Brownian disks in two dimensions interacting with large half-disk obstacles. With this prototypical obstacle geometry, we analyze how the stationary collective behavior depends on the degree of self-propulsion “diversity,” defined as proportional to the difference between the self-propulsion speeds, while keeping the average self-propulsion speed fixed. A wetting layer rich in fast particles arises. The rectification current is amplified by speed diversity due to a superlinear dependence of rectification on self-propulsion speed, which arises from cooperative effects. Thus, the total rectification current cannot be obtained from an effective one-component active fluid with the same average self-propulsion speed, highlighting the importance of considering diversity in active matter.","lang":"eng"}],"oa_version":"None","date_created":"2023-10-22T22:01:13Z","department":[{"_id":"AnSa"}],"title":"Mixtures of self-propelled particles interacting with asymmetric obstacles","publication":"The European Physical Journal E","publisher":"Springer Nature","language":[{"iso":"eng"}],"month":"10","pmid":1,"day":"01","intvolume":" 46","publication_status":"published","scopus_import":"1","quality_controlled":"1","date_published":"2023-10-01T00:00:00Z","author":[{"id":"441e7207-f91f-11ec-b67c-9e6fe3d8fd6d","full_name":"Rojas Vega, Mauricio Nicolas","last_name":"Rojas Vega","first_name":"Mauricio Nicolas"},{"full_name":"De Castro, Pablo","first_name":"Pablo","last_name":"De Castro"},{"full_name":"Soto, Rodrigo","last_name":"Soto","first_name":"Rodrigo"}],"date_updated":"2023-10-31T11:16:41Z","doi":"10.1140/epje/s10189-023-00354-y","article_processing_charge":"No","article_number":"95"},{"status":"public","article_type":"review","external_id":{"pmid":["37610741"]},"issue":"10","citation":{"apa":"Schumann, G., Andreassen, O. A., Banaschewski, T., Calhoun, V. D., Clinton, N., Desrivieres, S., … Westlye, L. (2023). Addressing global environmental challenges to mental health using population neuroscience: A review. JAMA Psychiatry. American Medical Association. https://doi.org/10.1001/jamapsychiatry.2023.2996","ieee":"G. Schumann et al., “Addressing global environmental challenges to mental health using population neuroscience: A review,” JAMA Psychiatry, vol. 80, no. 10. American Medical Association, pp. 1066–1074, 2023.","chicago":"Schumann, Gunter, Ole A. Andreassen, Tobias Banaschewski, Vince D. Calhoun, Nicholas Clinton, Sylvane Desrivieres, Ragnhild Eek Brandlistuen, et al. “Addressing Global Environmental Challenges to Mental Health Using Population Neuroscience: A Review.” JAMA Psychiatry. American Medical Association, 2023. https://doi.org/10.1001/jamapsychiatry.2023.2996.","short":"G. Schumann, O.A. Andreassen, T. Banaschewski, V.D. Calhoun, N. Clinton, S. Desrivieres, R.E. Brandlistuen, J. Feng, S. Hese, E. Hitchen, P. Hoffmann, T. Jia, V. Jirsa, A.F. Marquand, F. Nees, M.M. Nöthen, G. Novarino, E. Polemiti, M. Ralser, M. Rapp, K. Schepanski, T. Schikowski, M. Slater, P. Sommer, B.C. Stahl, P.M. Thompson, S. Twardziok, D. Van Der Meer, H. Walter, L. Westlye, JAMA Psychiatry 80 (2023) 1066–1074.","ista":"Schumann G, Andreassen OA, Banaschewski T, Calhoun VD, Clinton N, Desrivieres S, Brandlistuen RE, Feng J, Hese S, Hitchen E, Hoffmann P, Jia T, Jirsa V, Marquand AF, Nees F, Nöthen MM, Novarino G, Polemiti E, Ralser M, Rapp M, Schepanski K, Schikowski T, Slater M, Sommer P, Stahl BC, Thompson PM, Twardziok S, Van Der Meer D, Walter H, Westlye L. 2023. Addressing global environmental challenges to mental health using population neuroscience: A review. JAMA Psychiatry. 80(10), 1066–1074.","mla":"Schumann, Gunter, et al. “Addressing Global Environmental Challenges to Mental Health Using Population Neuroscience: A Review.” JAMA Psychiatry, vol. 80, no. 10, American Medical Association, 2023, pp. 1066–74, doi:10.1001/jamapsychiatry.2023.2996.","ama":"Schumann G, Andreassen OA, Banaschewski T, et al. Addressing global environmental challenges to mental health using population neuroscience: A review. JAMA Psychiatry. 2023;80(10):1066-1074. doi:10.1001/jamapsychiatry.2023.2996"},"publication_identifier":{"eissn":["2168-6238"]},"page":"1066-1074","volume":80,"type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14443","year":"2023","abstract":[{"lang":"eng","text":"Importance Climate change, pollution, urbanization, socioeconomic inequality, and psychosocial effects of the COVID-19 pandemic have caused massive changes in environmental conditions that affect brain health during the life span, both on a population level as well as on the level of the individual. How these environmental factors influence the brain, behavior, and mental illness is not well known.\r\nObservations A research strategy enabling population neuroscience to contribute to identify brain mechanisms underlying environment-related mental illness by leveraging innovative enrichment tools for data federation, geospatial observation, climate and pollution measures, digital health, and novel data integration techniques is described. This strategy can inform innovative treatments that target causal cognitive and molecular mechanisms of mental illness related to the environment. An example is presented of the environMENTAL Project that is leveraging federated cohort data of over 1.5 million European citizens and patients enriched with deep phenotyping data from large-scale behavioral neuroimaging cohorts to identify brain mechanisms related to environmental adversity underlying symptoms of depression, anxiety, stress, and substance misuse.\r\nConclusions and Relevance This research will lead to the development of objective biomarkers and evidence-based interventions that will significantly improve outcomes of environment-related mental illness."}],"department":[{"_id":"GaNo"}],"title":"Addressing global environmental challenges to mental health using population neuroscience: A review","publication":"JAMA Psychiatry","publisher":"American Medical Association","oa_version":"None","date_created":"2023-10-22T22:01:14Z","pmid":1,"day":"01","language":[{"iso":"eng"}],"month":"10","intvolume":" 80","publication_status":"published","author":[{"full_name":"Schumann, Gunter","last_name":"Schumann","first_name":"Gunter"},{"last_name":"Andreassen","first_name":"Ole A.","full_name":"Andreassen, Ole A."},{"first_name":"Tobias","last_name":"Banaschewski","full_name":"Banaschewski, Tobias"},{"full_name":"Calhoun, Vince D.","last_name":"Calhoun","first_name":"Vince D."},{"first_name":"Nicholas","last_name":"Clinton","full_name":"Clinton, Nicholas"},{"last_name":"Desrivieres","first_name":"Sylvane","full_name":"Desrivieres, Sylvane"},{"last_name":"Brandlistuen","first_name":"Ragnhild Eek","full_name":"Brandlistuen, Ragnhild Eek"},{"full_name":"Feng, Jianfeng","first_name":"Jianfeng","last_name":"Feng"},{"last_name":"Hese","first_name":"Soeren","full_name":"Hese, Soeren"},{"last_name":"Hitchen","first_name":"Esther","full_name":"Hitchen, Esther"},{"full_name":"Hoffmann, Per","last_name":"Hoffmann","first_name":"Per"},{"last_name":"Jia","first_name":"Tianye","full_name":"Jia, Tianye"},{"full_name":"Jirsa, Viktor","first_name":"Viktor","last_name":"Jirsa"},{"full_name":"Marquand, Andre F.","last_name":"Marquand","first_name":"Andre F."},{"full_name":"Nees, Frauke","last_name":"Nees","first_name":"Frauke"},{"first_name":"Markus M.","last_name":"Nöthen","full_name":"Nöthen, Markus M."},{"orcid":"0000-0002-7673-7178","last_name":"Novarino","first_name":"Gaia","id":"3E57A680-F248-11E8-B48F-1D18A9856A87","full_name":"Novarino, Gaia"},{"full_name":"Polemiti, Elli","first_name":"Elli","last_name":"Polemiti"},{"first_name":"Markus","last_name":"Ralser","full_name":"Ralser, Markus"},{"full_name":"Rapp, Michael","last_name":"Rapp","first_name":"Michael"},{"last_name":"Schepanski","first_name":"Kerstin","full_name":"Schepanski, Kerstin"},{"full_name":"Schikowski, Tamara","last_name":"Schikowski","first_name":"Tamara"},{"full_name":"Slater, Mel","last_name":"Slater","first_name":"Mel"},{"full_name":"Sommer, Peter","first_name":"Peter","last_name":"Sommer"},{"full_name":"Stahl, Bernd Carsten","first_name":"Bernd Carsten","last_name":"Stahl"},{"full_name":"Thompson, Paul M.","first_name":"Paul M.","last_name":"Thompson"},{"full_name":"Twardziok, Sven","first_name":"Sven","last_name":"Twardziok"},{"last_name":"Van Der Meer","first_name":"Dennis","full_name":"Van Der Meer, Dennis"},{"first_name":"Henrik","last_name":"Walter","full_name":"Walter, Henrik"},{"full_name":"Westlye, Lars","first_name":"Lars","last_name":"Westlye"}],"date_published":"2023-10-01T00:00:00Z","date_updated":"2023-10-31T12:17:20Z","doi":"10.1001/jamapsychiatry.2023.2996","article_processing_charge":"No","scopus_import":"1","quality_controlled":"1"},{"abstract":[{"text":"We prove several results about substructures in Latin squares. First, we explain how to adapt our recent work on high-girth Steiner triple systems to the setting of Latin squares, resolving a conjecture of Linial that there exist Latin squares with arbitrarily high girth. As a consequence, we see that the number of order- n Latin squares with no intercalate (i.e., no 2×2 Latin subsquare) is at least (e−9/4n−o(n))n2. Equivalently, P[N=0]≥e−n2/4−o(n2)=e−(1+o(1))EN\r\n , where N is the number of intercalates in a uniformly random order- n Latin square. \r\nIn fact, extending recent work of Kwan, Sah, and Sawhney, we resolve the general large-deviation problem for intercalates in random Latin squares, up to constant factors in the exponent: for any constant 0<δ≤1 we have P[N≤(1−δ)EN]=exp(−Θ(n2)) and for any constant δ>0 we have P[N≥(1+δ)EN]=exp(−Θ(n4/3logn)). \r\nFinally, as an application of some new general tools for studying substructures in random Latin squares, we show that in almost all order- n Latin squares, the number of cuboctahedra (i.e., the number of pairs of possibly degenerate 2×2 submatrices with the same arrangement of symbols) is of order n4, which is the minimum possible. As observed by Gowers and Long, this number can be interpreted as measuring ``how associative'' the quasigroup associated with the Latin square is.","lang":"eng"}],"arxiv":1,"date_created":"2023-10-22T22:01:14Z","oa_version":"Preprint","publisher":"Springer Nature","publication":"Israel Journal of Mathematics","department":[{"_id":"MaKw"}],"title":"Substructures in Latin squares","publication_identifier":{"issn":["0021-2172"],"eissn":["1565-8511"]},"citation":{"ista":"Kwan MA, Sah A, Sawhney M, Simkin M. 2023. Substructures in Latin squares. Israel Journal of Mathematics. 256(2), 363–416.","short":"M.A. Kwan, A. Sah, M. Sawhney, M. Simkin, Israel Journal of Mathematics 256 (2023) 363–416.","mla":"Kwan, Matthew Alan, et al. “Substructures in Latin Squares.” Israel Journal of Mathematics, vol. 256, no. 2, Springer Nature, 2023, pp. 363–416, doi:10.1007/s11856-023-2513-9.","ama":"Kwan MA, Sah A, Sawhney M, Simkin M. Substructures in Latin squares. Israel Journal of Mathematics. 2023;256(2):363-416. doi:10.1007/s11856-023-2513-9","apa":"Kwan, M. A., Sah, A., Sawhney, M., & Simkin, M. (2023). Substructures in Latin squares. Israel Journal of Mathematics. Springer Nature. https://doi.org/10.1007/s11856-023-2513-9","chicago":"Kwan, Matthew Alan, Ashwin Sah, Mehtaab Sawhney, and Michael Simkin. “Substructures in Latin Squares.” Israel Journal of Mathematics. Springer Nature, 2023. https://doi.org/10.1007/s11856-023-2513-9.","ieee":"M. A. Kwan, A. Sah, M. Sawhney, and M. Simkin, “Substructures in Latin squares,” Israel Journal of Mathematics, vol. 256, no. 2. Springer Nature, pp. 363–416, 2023."},"issue":"2","external_id":{"arxiv":["2202.05088"]},"article_type":"original","status":"public","acknowledgement":"Sah and Sawhney were supported by NSF Graduate Research Fellowship Program DGE-1745302. Sah was supported by the PD Soros Fellowship. Simkin was supported by the Center of Mathematical Sciences and Applications at Harvard University.","oa":1,"year":"2023","_id":"14444","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","volume":256,"page":"363-416","quality_controlled":"1","scopus_import":"1","article_processing_charge":"Yes (in subscription journal)","date_updated":"2023-10-31T11:27:30Z","doi":"10.1007/s11856-023-2513-9","author":[{"full_name":"Kwan, Matthew Alan","id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3","first_name":"Matthew Alan","orcid":"0000-0002-4003-7567","last_name":"Kwan"},{"last_name":"Sah","first_name":"Ashwin","full_name":"Sah, Ashwin"},{"first_name":"Mehtaab","last_name":"Sawhney","full_name":"Sawhney, Mehtaab"},{"full_name":"Simkin, Michael","first_name":"Michael","last_name":"Simkin"}],"date_published":"2023-09-01T00:00:00Z","month":"09","language":[{"iso":"eng"}],"day":"01","publication_status":"published","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2202.05088"}],"intvolume":" 256"},{"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file_date_updated":"2023-10-31T11:20:31Z","quality_controlled":"1","scopus_import":"1","date_updated":"2023-12-13T13:09:07Z","doi":"10.1007/s11856-023-2521-9","article_processing_charge":"Yes (via OA deal)","date_published":"2023-09-01T00:00:00Z","author":[{"last_name":"Wagner","orcid":"0000-0002-1494-0568","first_name":"Uli","id":"36690CA2-F248-11E8-B48F-1D18A9856A87","full_name":"Wagner, Uli"},{"id":"4C20D868-F248-11E8-B48F-1D18A9856A87","full_name":"Wild, Pascal","last_name":"Wild","first_name":"Pascal"}],"publication_status":"published","file":[{"access_level":"open_access","creator":"dernst","relation":"main_file","date_created":"2023-10-31T11:20:31Z","success":1,"content_type":"application/pdf","file_id":"14475","date_updated":"2023-10-31T11:20:31Z","checksum":"fbb05619fe4b650f341cc730425dd9c3","file_name":"2023_IsraelJourMath_Wagner.pdf","file_size":623787}],"intvolume":" 256","language":[{"iso":"eng"}],"month":"09","isi":1,"day":"01","ddc":["510"],"oa_version":"Published Version","date_created":"2023-10-22T22:01:14Z","publisher":"Springer Nature","title":"Coboundary expansion, equivariant overlap, and crossing numbers of simplicial complexes","department":[{"_id":"UlWa"}],"publication":"Israel Journal of Mathematics","abstract":[{"lang":"eng","text":"We prove the following quantitative Borsuk–Ulam-type result (an equivariant analogue of Gromov’s Topological Overlap Theorem): Let X be a free ℤ/2-complex of dimension d with coboundary expansion at least ηk in dimension 0 ≤ k < d. Then for every equivariant map F: X →ℤ/2 ℝd, the fraction of d-simplices σ of X with 0 ∈ F (σ) is at least 2−d Π d−1k=0ηk.\r\n\r\nAs an application, we show that for every sufficiently thick d-dimensional spherical building Y and every map f: Y → ℝ2d, we have f(σ) ∩ f(τ) ≠ ∅ for a constant fraction μd > 0 of pairs {σ, τ} of d-simplices of Y. In particular, such complexes are non-embeddable into ℝ2d, which proves a conjecture of Tancer and Vorwerk for sufficiently thick spherical buildings.\r\n\r\nWe complement these results by upper bounds on the coboundary expansion of two families of simplicial complexes; this indicates some limitations to the bounds one can obtain by straighforward applications of the quantitative Borsuk–Ulam theorem. Specifically, we prove\r\n\r\n• an upper bound of (d + 1)/2d on the normalized (d − 1)-th coboundary expansion constant of complete (d + 1)-partite d-dimensional complexes (under a mild divisibility assumption on the sizes of the parts); and\r\n\r\n• an upper bound of (d + 1)/2d + ε on the normalized (d − 1)-th coboundary expansion of the d-dimensional spherical building associated with GLd+2(Fq) for any ε > 0 and sufficiently large q. This disproves, in a rather strong sense, a conjecture of Lubotzky, Meshulam and Mozes."}],"has_accepted_license":"1","year":"2023","_id":"14445","type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"675-717","volume":256,"publication_identifier":{"issn":["0021-2172"],"eissn":["1565-8511"]},"citation":{"ama":"Wagner U, Wild P. Coboundary expansion, equivariant overlap, and crossing numbers of simplicial complexes. Israel Journal of Mathematics. 2023;256(2):675-717. doi:10.1007/s11856-023-2521-9","short":"U. Wagner, P. Wild, Israel Journal of Mathematics 256 (2023) 675–717.","ista":"Wagner U, Wild P. 2023. Coboundary expansion, equivariant overlap, and crossing numbers of simplicial complexes. Israel Journal of Mathematics. 256(2), 675–717.","mla":"Wagner, Uli, and Pascal Wild. “Coboundary Expansion, Equivariant Overlap, and Crossing Numbers of Simplicial Complexes.” Israel Journal of Mathematics, vol. 256, no. 2, Springer Nature, 2023, pp. 675–717, doi:10.1007/s11856-023-2521-9.","ieee":"U. Wagner and P. Wild, “Coboundary expansion, equivariant overlap, and crossing numbers of simplicial complexes,” Israel Journal of Mathematics, vol. 256, no. 2. Springer Nature, pp. 675–717, 2023.","chicago":"Wagner, Uli, and Pascal Wild. “Coboundary Expansion, Equivariant Overlap, and Crossing Numbers of Simplicial Complexes.” Israel Journal of Mathematics. Springer Nature, 2023. https://doi.org/10.1007/s11856-023-2521-9.","apa":"Wagner, U., & Wild, P. (2023). Coboundary expansion, equivariant overlap, and crossing numbers of simplicial complexes. Israel Journal of Mathematics. Springer Nature. https://doi.org/10.1007/s11856-023-2521-9"},"external_id":{"isi":["001081646400010"]},"article_type":"original","issue":"2","status":"public","oa":1},{"abstract":[{"text":"Recent work has paid close attention to the first principle of Granger causality, according to which cause precedes effect. In this context, the question may arise whether the detected direction of causality also reverses after the time reversal of unidirectionally coupled data. Recently, it has been shown that for unidirectionally causally connected autoregressive (AR) processes X → Y, after time reversal of data, the opposite causal direction Y → X is indeed detected, although typically as part of the bidirectional X↔ Y link. As we argue here, the answer is different when the measured data are not from AR processes but from linked deterministic systems. When the goal is the usual forward data analysis, cross-mapping-like approaches correctly detect X → Y, while Granger causality-like approaches, which should not be used for deterministic time series, detect causal independence X → Y. The results of backward causal analysis depend on the predictability of the reversed data. Unlike AR processes, observables from deterministic dynamical systems, even complex nonlinear ones, can be predicted well forward, while backward predictions can be difficult (notably when the time reversal of a function leads to one-to-many relations). To address this problem, we propose an approach based on models that provide multiple candidate predictions for the target, combined with a loss function that consideres only the best candidate. The resulting good forward and backward predictability supports the view that unidirectionally causally linked deterministic dynamical systems X → Y can be expected to detect the same link both before and after time reversal.","lang":"eng"}],"oa_version":"Published Version","date_created":"2023-10-22T22:01:15Z","publisher":"Sciendo","department":[{"_id":"ChLa"}],"title":"Against the flow of time with multi-output models","publication":"Measurement Science Review","publication_identifier":{"eissn":["1335-8871"]},"citation":{"apa":"Jakubík, J., Phuong, M., Chvosteková, M., & Krakovská, A. (2023). Against the flow of time with multi-output models. Measurement Science Review. Sciendo. https://doi.org/10.2478/msr-2023-0023","chicago":"Jakubík, Jozef, Mary Phuong, Martina Chvosteková, and Anna Krakovská. “Against the Flow of Time with Multi-Output Models.” Measurement Science Review. Sciendo, 2023. https://doi.org/10.2478/msr-2023-0023.","ieee":"J. Jakubík, M. Phuong, M. Chvosteková, and A. Krakovská, “Against the flow of time with multi-output models,” Measurement Science Review, vol. 23, no. 4. Sciendo, pp. 175–183, 2023.","ista":"Jakubík J, Phuong M, Chvosteková M, Krakovská A. 2023. Against the flow of time with multi-output models. Measurement Science Review. 23(4), 175–183.","short":"J. Jakubík, M. Phuong, M. Chvosteková, A. Krakovská, Measurement Science Review 23 (2023) 175–183.","mla":"Jakubík, Jozef, et al. “Against the Flow of Time with Multi-Output Models.” Measurement Science Review, vol. 23, no. 4, Sciendo, 2023, pp. 175–83, doi:10.2478/msr-2023-0023.","ama":"Jakubík J, Phuong M, Chvosteková M, Krakovská A. Against the flow of time with multi-output models. Measurement Science Review. 2023;23(4):175-183. doi:10.2478/msr-2023-0023"},"article_type":"original","issue":"4","acknowledgement":"The work was supported by the Scientific Grant Agency of the Ministry of Education of the Slovak Republic and the Slovak Academy of Sciences, projects APVV-21-0216, VEGA2-0096-21 and VEGA 2-0023-22.","oa":1,"status":"public","has_accepted_license":"1","year":"2023","_id":"14446","type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"175-183","volume":23,"quality_controlled":"1","scopus_import":"1","doi":"10.2478/msr-2023-0023","date_updated":"2023-10-31T12:12:47Z","article_processing_charge":"Yes","author":[{"full_name":"Jakubík, Jozef","first_name":"Jozef","last_name":"Jakubík"},{"id":"3EC6EE64-F248-11E8-B48F-1D18A9856A87","full_name":"Bui Thi Mai, Phuong","last_name":"Bui Thi Mai","first_name":"Phuong"},{"last_name":"Chvosteková","first_name":"Martina","full_name":"Chvosteková, Martina"},{"first_name":"Anna","last_name":"Krakovská","full_name":"Krakovská, Anna"}],"date_published":"2023-08-01T00:00:00Z","tmp":{"short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"file_date_updated":"2023-10-31T12:07:23Z","language":[{"iso":"eng"}],"month":"08","day":"01","ddc":["510"],"publication_status":"published","file":[{"content_type":"application/pdf","success":1,"date_created":"2023-10-31T12:07:23Z","relation":"main_file","access_level":"open_access","creator":"dernst","file_size":2639783,"file_name":"2023_MeasurementScienceRev_Jakubik.pdf","checksum":"b069cc10fa6a7c96b2bc9f728165f9e6","file_id":"14476","date_updated":"2023-10-31T12:07:23Z"}],"intvolume":" 23"},{"external_id":{"isi":["001084334300001"]},"article_type":"original","oa":1,"status":"public","acknowledgement":"The authors would like to thank Karolína Kubiasová and Iñigo Saiz-Fernández for valuable scientific discussions. Open access publishing supported by the National Technical Library in Prague. This work was supported by the Palacký University Olomouc Young Researcher Grant Competition (JG_2020_002), by the Internal Grant Agency of Palacký University Olomouc (IGA_PrF_2023_016, IGA_PrF_2023_031), by the Ministry of Education, Youth and Sports of the Czech Republic through the European Regional Development Fund-Project Plants as a tool for sustainable global development (CZ.02.1.01/0.0/0.0/16_019/0000827) and the project Support of mobility at Palacký University Olomouc II. (CZ.02.2.69/0.0/0.0/18_053/0016919). The Biacore T200 SPR instrument was provided by the WISB Research Technology Facility within the School of Life Sciences, University of Warwick.","publication_identifier":{"issn":["0167-6903"],"eissn":["1573-5087"]},"citation":{"short":"K. Bieleszová, P. Hladík, M. Kubala, R. Napier, F. Brunoni, Z. Gelová, L. Fiedler, I. Kulich, M. Strnad, K. Doležal, O. Novák, J. Friml, A. Žukauskaitė, Plant Growth Regulation (2023).","ista":"Bieleszová K, Hladík P, Kubala M, Napier R, Brunoni F, Gelová Z, Fiedler L, Kulich I, Strnad M, Doležal K, Novák O, Friml J, Žukauskaitė A. 2023. New fluorescent auxin derivatives: anti-auxin activity and accumulation patterns in Arabidopsis thaliana. Plant Growth Regulation.","mla":"Bieleszová, Kristýna, et al. “New Fluorescent Auxin Derivatives: Anti-Auxin Activity and Accumulation Patterns in Arabidopsis Thaliana.” Plant Growth Regulation, Springer Nature, 2023, doi:10.1007/s10725-023-01083-0.","ama":"Bieleszová K, Hladík P, Kubala M, et al. New fluorescent auxin derivatives: anti-auxin activity and accumulation patterns in Arabidopsis thaliana. Plant Growth Regulation. 2023. doi:10.1007/s10725-023-01083-0","apa":"Bieleszová, K., Hladík, P., Kubala, M., Napier, R., Brunoni, F., Gelová, Z., … Žukauskaitė, A. (2023). New fluorescent auxin derivatives: anti-auxin activity and accumulation patterns in Arabidopsis thaliana. Plant Growth Regulation. Springer Nature. https://doi.org/10.1007/s10725-023-01083-0","chicago":"Bieleszová, Kristýna, Pavel Hladík, Martin Kubala, Richard Napier, Federica Brunoni, Zuzana Gelová, Lukas Fiedler, et al. “New Fluorescent Auxin Derivatives: Anti-Auxin Activity and Accumulation Patterns in Arabidopsis Thaliana.” Plant Growth Regulation. Springer Nature, 2023. https://doi.org/10.1007/s10725-023-01083-0.","ieee":"K. Bieleszová et al., “New fluorescent auxin derivatives: anti-auxin activity and accumulation patterns in Arabidopsis thaliana,” Plant Growth Regulation. Springer Nature, 2023."},"type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2023","_id":"14447","abstract":[{"lang":"eng","text":"Auxin belongs among major phytohormones and governs multiple aspects of plant growth and development. The establishment of auxin concentration gradients, determines, among other processes, plant organ positioning and growth responses to environmental stimuli.\r\nHerein we report the synthesis of new NBD- or DNS-labelled IAA derivatives and the elucidation of their biological activity, fluorescence properties and subcellular accumulation patterns in planta. These novel compounds did not show auxin-like activity, but instead antagonized physiological auxin effects. The DNS-labelled derivatives FL5 and FL6 showed strong anti-auxin activity in roots and hypocotyls, which also occurred at the level of gene transcription as confirmed by quantitative PCR analysis. The auxin antagonism of our derivatives was further demonstrated in vitro using an SPR-based binding assay. The NBD-labelled compound FL4 with the best fluorescence properties proved to be unsuitable to study auxin accumulation patterns in planta. On the other hand, the strongest anti-auxin activity possessing compounds FL5 and FL6 could be useful to study binding mechanisms to auxin receptors and for manipulations of auxin-regulated processes."}],"publisher":"Springer Nature","title":"New fluorescent auxin derivatives: anti-auxin activity and accumulation patterns in Arabidopsis thaliana","department":[{"_id":"JiFr"}],"publication":"Plant Growth Regulation","oa_version":"Published Version","date_created":"2023-10-22T22:01:15Z","day":"13","language":[{"iso":"eng"}],"isi":1,"month":"10","publication_status":"epub_ahead","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1007/s10725-023-01083-0"}],"doi":"10.1007/s10725-023-01083-0","date_updated":"2023-12-13T13:08:25Z","article_processing_charge":"Yes (via OA deal)","date_published":"2023-10-13T00:00:00Z","author":[{"full_name":"Bieleszová, Kristýna","first_name":"Kristýna","last_name":"Bieleszová"},{"full_name":"Hladík, Pavel","first_name":"Pavel","last_name":"Hladík"},{"last_name":"Kubala","first_name":"Martin","full_name":"Kubala, Martin"},{"last_name":"Napier","first_name":"Richard","full_name":"Napier, Richard"},{"full_name":"Brunoni, Federica","last_name":"Brunoni","first_name":"Federica"},{"full_name":"Gelová, Zuzana","id":"0AE74790-0E0B-11E9-ABC7-1ACFE5697425","first_name":"Zuzana","orcid":"0000-0003-4783-1752","last_name":"Gelová"},{"first_name":"Lukas","last_name":"Fiedler","full_name":"Fiedler, Lukas","id":"7c417475-8972-11ed-ae7b-8b674ca26986"},{"first_name":"Ivan","last_name":"Kulich","full_name":"Kulich, Ivan","id":"57a1567c-8314-11eb-9063-c9ddc3451a54"},{"first_name":"Miroslav","last_name":"Strnad","full_name":"Strnad, Miroslav"},{"full_name":"Doležal, Karel","last_name":"Doležal","first_name":"Karel"},{"last_name":"Novák","first_name":"Ondřej","full_name":"Novák, Ondřej"},{"last_name":"Friml","orcid":"0000-0002-8302-7596","first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jiří"},{"first_name":"Asta","last_name":"Žukauskaitė","full_name":"Žukauskaitė, Asta"}],"quality_controlled":"1","scopus_import":"1"},{"arxiv":1,"abstract":[{"lang":"eng","text":"We consider the problem of solving LP relaxations of MAP-MRF inference problems, and in particular the method proposed recently in [16], [35]. As a key computational subroutine, it uses a variant of the Frank-Wolfe (FW) method to minimize a smooth convex function over a combinatorial polytope. We propose an efficient implementation of this subroutine based on in-face Frank-Wolfe directions, introduced in [4] in a different context. More generally, we define an abstract data structure for a combinatorial subproblem that enables in-face FW directions, and describe its specialization for tree-structured MAP-MRF inference subproblems. Experimental results indicate that the resulting method is the current state-of-art LP solver for some classes of problems. Our code is available at pub.ist.ac.at/~vnk/papers/IN-FACE-FW.html."}],"department":[{"_id":"VlKo"}],"title":"Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions","publication":"Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition","publisher":"IEEE","oa_version":"Preprint","date_created":"2023-10-22T22:01:16Z","oa":1,"status":"public","external_id":{"arxiv":["2010.09567"]},"citation":{"ama":"Kolmogorov V. Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions. In: Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Vol 2023. IEEE; 2023:11980-11989. doi:10.1109/CVPR52729.2023.01153","mla":"Kolmogorov, Vladimir. “Solving Relaxations of MAP-MRF Problems: Combinatorial in-Face Frank-Wolfe Directions.” Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, vol. 2023, IEEE, 2023, pp. 11980–89, doi:10.1109/CVPR52729.2023.01153.","ista":"Kolmogorov V. 2023. Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions. Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition. CVPR: Conference on Computer Vision and Pattern Recognition vol. 2023, 11980–11989.","short":"V. Kolmogorov, in:, Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, IEEE, 2023, pp. 11980–11989.","ieee":"V. Kolmogorov, “Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions,” in Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Vancouver, Canada, 2023, vol. 2023, pp. 11980–11989.","chicago":"Kolmogorov, Vladimir. “Solving Relaxations of MAP-MRF Problems: Combinatorial in-Face Frank-Wolfe Directions.” In Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2023:11980–89. IEEE, 2023. https://doi.org/10.1109/CVPR52729.2023.01153.","apa":"Kolmogorov, V. (2023). Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions. In Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition (Vol. 2023, pp. 11980–11989). Vancouver, Canada: IEEE. https://doi.org/10.1109/CVPR52729.2023.01153"},"publication_identifier":{"issn":["1063-6919"],"isbn":["9798350301298"]},"page":"11980-11989","volume":2023,"type":"conference","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14448","year":"2023","author":[{"last_name":"Kolmogorov","first_name":"Vladimir","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","full_name":"Kolmogorov, Vladimir"}],"date_published":"2023-08-22T00:00:00Z","doi":"10.1109/CVPR52729.2023.01153","date_updated":"2023-10-31T12:01:24Z","article_processing_charge":"No","scopus_import":"1","quality_controlled":"1","conference":{"name":"CVPR: Conference on Computer Vision and Pattern Recognition","end_date":"2023-06-24","location":"Vancouver, Canada","start_date":"2023-06-17"},"day":"22","language":[{"iso":"eng"}],"month":"08","main_file_link":[{"url":" https://doi.org/10.48550/arXiv.2010.09567","open_access":"1"}],"intvolume":" 2023","publication_status":"published"},{"day":"05","month":"10","language":[{"iso":"eng"}],"project":[{"grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2"},{"call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411"}],"publication_status":"epub_ahead","main_file_link":[{"url":"https://doi.org/10.1007/s00521-023-09033-7","open_access":"1"}],"article_processing_charge":"Yes (via OA deal)","doi":"10.1007/s00521-023-09033-7","date_updated":"2023-10-31T10:58:28Z","author":[{"id":"2CEB641C-A400-11E9-A717-D712E6697425","full_name":"Cornalba, Federico","orcid":"0000-0002-6269-5149","last_name":"Cornalba","first_name":"Federico"},{"last_name":"Disselkamp","first_name":"Constantin","full_name":"Disselkamp, Constantin"},{"full_name":"Scassola, Davide","last_name":"Scassola","first_name":"Davide"},{"full_name":"Helf, Christopher","last_name":"Helf","first_name":"Christopher"}],"date_published":"2023-10-05T00:00:00Z","quality_controlled":"1","scopus_import":"1","article_type":"original","external_id":{"arxiv":["2203.04579"]},"oa":1,"status":"public","acknowledgement":"Open access funding provided by Università degli Studi di Trieste within the CRUI-CARE Agreement. Funding was provided by Austrian Science Fund (Grant No. F65), Horizon 2020 (Grant No. 754411) and Österreichische Forschungsförderungsgesellschaft.","publication_identifier":{"issn":["0941-0643"],"eissn":["1433-3058"]},"citation":{"ieee":"F. Cornalba, C. Disselkamp, D. Scassola, and C. Helf, “Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading,” Neural Computing and Applications. Springer Nature, 2023.","chicago":"Cornalba, Federico, Constantin Disselkamp, Davide Scassola, and Christopher Helf. “Multi-Objective Reward Generalization: Improving Performance of Deep Reinforcement Learning for Applications in Single-Asset Trading.” Neural Computing and Applications. Springer Nature, 2023. https://doi.org/10.1007/s00521-023-09033-7.","apa":"Cornalba, F., Disselkamp, C., Scassola, D., & Helf, C. (2023). Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading. Neural Computing and Applications. Springer Nature. https://doi.org/10.1007/s00521-023-09033-7","ama":"Cornalba F, Disselkamp C, Scassola D, Helf C. Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading. Neural Computing and Applications. 2023. doi:10.1007/s00521-023-09033-7","mla":"Cornalba, Federico, et al. “Multi-Objective Reward Generalization: Improving Performance of Deep Reinforcement Learning for Applications in Single-Asset Trading.” Neural Computing and Applications, Springer Nature, 2023, doi:10.1007/s00521-023-09033-7.","short":"F. Cornalba, C. Disselkamp, D. Scassola, C. Helf, Neural Computing and Applications (2023).","ista":"Cornalba F, Disselkamp C, Scassola D, Helf C. 2023. Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading. Neural Computing and Applications."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","year":"2023","_id":"14451","arxiv":1,"abstract":[{"text":"We investigate the potential of Multi-Objective, Deep Reinforcement Learning for stock and cryptocurrency single-asset trading: in particular, we consider a Multi-Objective algorithm which generalizes the reward functions and discount factor (i.e., these components are not specified a priori, but incorporated in the learning process). Firstly, using several important assets (BTCUSD, ETHUSDT, XRPUSDT, AAPL, SPY, NIFTY50), we verify the reward generalization property of the proposed Multi-Objective algorithm, and provide preliminary statistical evidence showing increased predictive stability over the corresponding Single-Objective strategy. Secondly, we show that the Multi-Objective algorithm has a clear edge over the corresponding Single-Objective strategy when the reward mechanism is sparse (i.e., when non-null feedback is infrequent over time). Finally, we discuss the generalization properties with respect to the discount factor. The entirety of our code is provided in open-source format.","lang":"eng"}],"publisher":"Springer Nature","publication":"Neural Computing and Applications","title":"Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading","department":[{"_id":"JuFi"}],"date_created":"2023-10-22T22:01:16Z","ec_funded":1,"oa_version":"Published Version"}]